AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138380 MtrunA17_Chr2g0291481 97.162 740 21 0 1 740 1 740 0.0 1465
Msa0138380 MtrunA17_Chr1g0202741 31.755 718 448 15 39 739 9 701 1.32e-108 346
Msa0138380 MtrunA17_Chr1g0202731 31.154 719 451 17 39 739 14 706 1.57e-105 338
Msa0138380 MtrunA17_Chr8g0348521 32.421 731 423 20 39 738 9 699 1.69e-101 327
Msa0138380 MtrunA17_Chr8g0348531 33.431 685 410 17 73 738 57 714 2.24e-101 327
Msa0138380 MtrunA17_Chr4g0058571 30.806 633 402 13 128 740 114 730 2.55e-82 277
Msa0138380 MtrunA17_Chr8g0349071 36.478 318 178 6 257 568 1 300 1.18e-52 184
Msa0138380 MtrunA17_Chr2g0301511 30.455 220 128 6 286 483 541 757 2.75e-22 102
Msa0138380 MtrunA17_Chr1g0192121 26.749 243 148 6 293 509 511 749 5.37e-21 98.6
Msa0138380 MtrunA17_Chr7g0272591 27.477 222 126 7 293 486 524 738 5.62e-21 98.6
Msa0138380 MtrunA17_Chr4g0061441 25.651 269 168 8 289 533 475 735 5.98e-21 98.2
Msa0138380 MtrunA17_Chr8g0387591 28.829 222 126 6 286 482 552 766 1.12e-20 97.4
Msa0138380 MtrunA17_Chr3g0131401 26.697 221 124 5 293 483 541 753 3.23e-20 96.3
Msa0138380 MtrunA17_Chr8g0385411 26.977 215 131 5 293 483 520 732 8.25e-20 94.7
Msa0138380 MtrunA17_Chr3g0131381 27.511 229 127 6 286 483 527 747 1.21e-19 94.4
Msa0138380 MtrunA17_Chr3g0131361 26.457 223 127 7 293 483 522 739 1.02e-17 88.2
Msa0138380 MtrunA17_Chr7g0238371 24.898 245 148 6 293 504 469 710 3.79e-17 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138380 AT5G49740.1 58.275 719 283 6 36 740 32 747 0.0 867
Msa0138380 AT5G49730.1 57.858 719 284 7 36 740 25 738 0.0 860
Msa0138380 AT5G49740.3 57.015 670 271 6 36 691 32 698 0.0 781
Msa0138380 AT5G49740.2 61.057 511 193 3 36 540 32 542 0.0 651
Msa0138380 AT5G49730.2 60.665 511 193 4 36 540 25 533 0.0 647
Msa0138380 AT1G01580.1 33.714 700 410 17 67 739 52 724 9.21e-117 368
Msa0138380 AT1G01580.2 33.714 700 410 17 67 739 130 802 1.02e-115 368
Msa0138380 AT1G01590.1 33.237 689 408 17 48 715 28 685 2.61e-110 351
Msa0138380 AT5G23980.1 31.319 728 436 17 39 739 8 698 6.45e-108 344
Msa0138380 AT5G23990.2 31.818 726 435 18 39 739 8 698 1.08e-107 344
Msa0138380 AT1G23020.7 31.811 679 417 16 48 715 28 671 1.06e-101 328
Msa0138380 AT1G23020.4 31.818 682 416 17 48 715 28 674 1.26e-100 325
Msa0138380 AT1G23020.3 31.818 682 416 17 48 715 28 674 1.26e-100 325
Msa0138380 AT1G23020.1 31.818 682 416 17 48 715 51 697 1.84e-100 325
Msa0138380 AT1G23020.5 31.818 682 416 17 48 715 51 697 1.84e-100 325
Msa0138380 AT1G23020.6 31.625 683 417 17 48 715 28 675 7.28e-100 323
Msa0138380 AT1G23020.2 31.625 683 417 17 48 715 51 698 1.24e-99 323
Msa0138380 AT5G23990.3 33.618 586 341 14 170 739 13 566 2.49e-96 310
Msa0138380 AT5G23990.1 33.564 578 344 13 178 739 103 656 9.48e-95 308
Msa0138380 AT5G50160.1 30.170 706 428 16 76 740 47 728 1.27e-85 286
Msa0138380 AT5G50160.2 31.802 566 334 12 210 740 1 549 1.04e-76 257
Msa0138380 AT1G19230.1 30.631 222 128 5 286 484 536 754 1.52e-25 113
Msa0138380 AT1G19230.2 30.631 222 128 5 286 484 562 780 1.60e-25 113
Msa0138380 AT5G07390.2 28.384 229 130 7 284 483 479 702 5.65e-22 102
Msa0138380 AT4G25090.1 29.412 221 130 7 284 483 473 688 6.56e-22 102
Msa0138380 AT5G07390.1 28.384 229 130 7 284 483 511 734 7.00e-22 101
Msa0138380 AT4G25090.2 27.336 289 164 11 284 533 461 742 7.37e-22 101
Msa0138380 AT1G64060.1 29.817 218 129 6 286 482 558 772 2.16e-21 100
Msa0138380 AT1G09090.2 26.818 220 134 6 289 484 473 689 9.54e-21 98.2
Msa0138380 AT5G47910.1 28.761 226 128 6 293 493 554 771 1.83e-20 97.4
Msa0138380 AT5G51060.1 24.620 329 183 12 265 533 487 810 2.88e-19 93.6
Msa0138380 AT5G60010.1 27.826 230 129 7 293 487 494 721 1.19e-18 91.7
Msa0138380 AT4G11230.1 30.588 170 106 4 323 482 592 759 2.88e-18 90.1
Msa0138380 AT3G45810.1 26.271 236 139 6 285 487 497 730 1.80e-16 84.3
Msa0138380 AT1G09090.1 29.577 142 85 4 289 418 473 611 3.12e-14 77.0

Find 211 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCACATGTTGGAAATTT+TGG 0.012603 1_3:+71242047 Msa0138380:CDS
AATAATATGTGCTTATAATT+TGG 0.131596 1_3:-71245591 None:intergenic
TTTATCAACCTTGATGTTAT+TGG 0.134284 1_3:-71244188 None:intergenic
TTTCCATAATCTTCATTATA+TGG 0.178699 1_3:+71240321 Msa0138380:CDS
TTTCCTATGCCTAGTGATTA+TGG 0.198831 1_3:+71243917 Msa0138380:CDS
TCACATTGCTGTTCTCATTA+AGG 0.202451 1_3:+71242967 Msa0138380:CDS
GAAGACTCACTTCTTGAATT+AGG 0.211364 1_3:-71242269 None:intergenic
CATAATCTTTATTGTGTTCA+TGG 0.219086 1_3:+71242584 Msa0138380:CDS
ATTGCATACCTAATTATTTC+TGG 0.228186 1_3:+71240731 Msa0138380:CDS
ATCCAGTTGGATTGGTTATA+TGG 0.235123 1_3:+71244050 Msa0138380:CDS
CAAACAATTAAAATATTTCT+TGG 0.237519 1_3:-71243402 None:intergenic
TTGGTACAGGAAACAATTTC+TGG 0.238946 1_3:+71243954 Msa0138380:CDS
CAATAAAGATTATGTATAAT+TGG 0.241871 1_3:-71242575 None:intergenic
GCTGTTCTCATTAAGGTTCT+TGG 0.262512 1_3:+71242974 Msa0138380:CDS
ATGTGGGTGACCTCGCTTCC+TGG 0.264483 1_3:+71242513 Msa0138380:CDS
TTGTTGTGTCAGCTACTAAA+TGG 0.270670 1_3:+71240282 Msa0138380:CDS
CAGTCCATTGTAAGATAAAA+AGG 0.273035 1_3:+71245417 Msa0138380:three_prime_UTR
GTAGCTGACACAACAAAATT+AGG 0.287451 1_3:-71240275 None:intergenic
AGCCCATATAATGAAGATTA+TGG 0.296364 1_3:-71240324 None:intergenic
GTGGTATAGTGGTTGGATTT+TGG 0.304110 1_3:+71244128 Msa0138380:CDS
TGAGTAATTTCTTGTAACTA+TGG 0.312971 1_3:+71240175 Msa0138380:exon
GGACTCCGTTCGGGCGGGAT+TGG 0.318769 1_3:+71242069 Msa0138380:CDS
TTCAGCAGTGGAACTTCCTT+TGG 0.321244 1_3:+71240407 Msa0138380:CDS
GATCCTCCCCAGAAATAATT+AGG 0.323576 1_3:-71240739 None:intergenic
ATCCTTAAAAGGACTCTATA+AGG 0.325913 1_3:+71245447 Msa0138380:three_prime_UTR
ATCCTTATCAATGGACCATT+TGG 0.329104 1_3:+71241104 Msa0138380:CDS
TTCCATAATCTTCATTATAT+GGG 0.341924 1_3:+71240322 Msa0138380:CDS
GTTTCTTCTAGCCCTTTAGA+TGG 0.344014 1_3:+71242938 Msa0138380:CDS
GTTGATAAAATTGAGCAAAA+TGG 0.345926 1_3:+71244202 Msa0138380:CDS
TGAATCCATGTCAGAGAAAT+GGG 0.346682 1_3:+71245062 Msa0138380:CDS
AAACAAGTTTATAAGGGTTA+TGG 0.350301 1_3:-71245548 None:intergenic
CTTGTAGTCTGCATGGTTGC+AGG 0.353731 1_3:+71244091 Msa0138380:CDS
TCCTTATCAATGGACCATTT+GGG 0.354970 1_3:+71241105 Msa0138380:CDS
TCCTTGTGGCACTGTGGAAA+TGG 0.355192 1_3:+71242731 Msa0138380:CDS
TACCGCCTGCCACTAATATA+AGG 0.356412 1_3:-71243308 None:intergenic
CATTTACTGTCCTTCTTGAT+TGG 0.357857 1_3:-71242689 None:intergenic
TTGAATCCATGTCAGAGAAA+TGG 0.358458 1_3:+71245061 Msa0138380:CDS
TGCATGGATTGTTCACAAAA+TGG 0.360348 1_3:+71240378 Msa0138380:CDS
GGCTCTAGGCCAGACTTTAA+AGG 0.367135 1_3:+71244286 Msa0138380:CDS
TTATTAGAATGGAAAGATAT+TGG 0.372165 1_3:+71242444 Msa0138380:CDS
CTATATGTTCCCTTCGTTGA+AGG 0.376889 1_3:+71245673 Msa0138380:three_prime_UTR
CCCCTTTGCAGTTATTAGAA+TGG 0.380554 1_3:+71242433 Msa0138380:intron
CTATGTTATTGAGTGGCTAA+TGG 0.381925 1_3:+71242239 Msa0138380:CDS
AAGGTACTATAATCCTTAAA+AGG 0.385912 1_3:+71245436 Msa0138380:three_prime_UTR
CAAAGCTATGACTGTGGAAA+TGG 0.386950 1_3:-71245194 None:intergenic
TCATTAAGGTTCTTGGCAAA+TGG 0.391972 1_3:+71242981 Msa0138380:CDS
TTTCTACATTAATATTATCA+TGG 0.392268 1_3:+71240054 Msa0138380:five_prime_UTR
CTTGAAGGAAAATGAAGCTT+AGG 0.393980 1_3:-71242877 None:intergenic
ATATTAGTGGCAGGCGGTAT+TGG 0.396276 1_3:+71243312 Msa0138380:CDS
GCCACTTACATCAAGTGATA+TGG 0.399229 1_3:-71243115 None:intergenic
GCTGATAACTCCTGCTAGAT+TGG 0.399708 1_3:-71242472 None:intergenic
CAAGTGTTGCACAAGAAATC+AGG 0.401849 1_3:+71245133 Msa0138380:CDS
CAGCTACTAAATGGACTCTT+AGG 0.404900 1_3:+71240291 Msa0138380:CDS
TTGCATACCTAATTATTTCT+GGG 0.411386 1_3:+71240732 Msa0138380:CDS
GTCTTCCATCTTTCCATCAT+AGG 0.420077 1_3:-71245232 None:intergenic
CTATATAAATCCAGTTGGAT+TGG 0.422614 1_3:+71244042 Msa0138380:CDS
TATGTCATTTCATCTACCTT+AGG 0.424790 1_3:+71243986 Msa0138380:CDS
CACCATATAACCAATCCAAC+TGG 0.430042 1_3:-71244052 None:intergenic
AGGTTCTTGGCAAATGGACC+GGG 0.430067 1_3:+71242987 Msa0138380:CDS
TAATGATAATATTCACATAA+AGG 0.431733 1_3:-71245498 None:intergenic
AGAAATGCAATTGCAAGAAC+AGG 0.433105 1_3:-71240704 None:intergenic
AAGGTTCTTGGCAAATGGAC+CGG 0.434194 1_3:+71242986 Msa0138380:CDS
AAAGTCCATAGGCGAAATCT+TGG 0.434354 1_3:-71241077 None:intergenic
CTCTAGCTTCCTTCCTATGA+TGG 0.436112 1_3:+71245219 Msa0138380:exon
GTACGAAAACCTTATATTAG+TGG 0.439883 1_3:+71243299 Msa0138380:CDS
GAAAATATACCTTTAAAGTC+TGG 0.441652 1_3:-71244295 None:intergenic
TTTCTATGCTTATACTATGC+AGG 0.442358 1_3:+71241187 Msa0138380:CDS
TGATTATGGAATGTCTGGTT+TGG 0.443470 1_3:+71243931 Msa0138380:CDS
GCTTCGGTTGAGGGGCCATA+TGG 0.449802 1_3:+71243082 Msa0138380:CDS
CCTAGTGATTATGGAATGTC+TGG 0.452709 1_3:+71243926 Msa0138380:CDS
CCCCAAATGGTCCATTGATA+AGG 0.454422 1_3:-71241106 None:intergenic
AAATTCCACGTTCGCACTCC+AGG 0.454972 1_3:-71242531 None:intergenic
ATGCTGCAAAATATCATGTA+TGG 0.457558 1_3:+71242172 Msa0138380:CDS
GTGGTAACAGCTTCGGTTGA+GGG 0.460759 1_3:+71243073 Msa0138380:CDS
AGAACAGATCCCCTTGAAAT+CGG 0.461594 1_3:-71242120 None:intergenic
TTGTAGCTGGTTTGTTGATG+TGG 0.462418 1_3:+71242496 Msa0138380:CDS
GTTTCTGCAACAGAGCTCAT+TGG 0.463709 1_3:+71241131 Msa0138380:CDS
ATCTTCGGTGGTATAGTGGT+TGG 0.467954 1_3:+71244121 Msa0138380:CDS
TAGGCGAAATCTTGGATACT+TGG 0.468997 1_3:-71241069 None:intergenic
ACAGGAAACAATTTCTGGTC+TGG 0.469821 1_3:+71243959 Msa0138380:CDS
AAGTTAACTACCATACAGTA+TGG 0.471321 1_3:+71244265 Msa0138380:CDS
TTCTACATTAATATTATCAT+GGG 0.472591 1_3:+71240055 Msa0138380:five_prime_UTR
AATATTAATGTAGAAATATG+AGG 0.473298 1_3:-71240047 None:intergenic
TTCTCCATCGTGTGAGGGAT+GGG 0.474532 1_3:+71243367 Msa0138380:CDS
ACGATAATTCCCGAACTTGA+AGG 0.476050 1_3:-71242892 None:intergenic
AGTATCCAAGATTTCGCCTA+TGG 0.476533 1_3:+71241072 Msa0138380:CDS
CACATTAAATTTCATTTCAG+TGG 0.478013 1_3:+71239996 Msa0138380:five_prime_UTR
GTTGCAGGTGTAGTTATCTT+CGG 0.483407 1_3:+71244106 Msa0138380:CDS
TGTAGCTGGTTTGTTGATGT+GGG 0.488112 1_3:+71242497 Msa0138380:CDS
CGGGATTGGATTAATGTGCT+TGG 0.488988 1_3:+71242083 Msa0138380:CDS
AAATGGAAGATGGGGTGATA+AGG 0.493095 1_3:-71245177 None:intergenic
CGCTTCCTGGAGTGCGAACG+TGG 0.494322 1_3:+71242526 Msa0138380:CDS
GGAACTTCCTTTGGAATCAC+AGG 0.496264 1_3:+71240416 Msa0138380:CDS
GTGTTCATGGCTTTGCATAT+TGG 0.498872 1_3:+71242597 Msa0138380:CDS
TGGTTATATGGTGGTACAAA+GGG 0.499086 1_3:+71244062 Msa0138380:CDS
GGAGTTATCAGCCTTGTAGC+TGG 0.499164 1_3:+71242483 Msa0138380:CDS
TATGGAATGTCTGGTTTGGT+TGG 0.500105 1_3:+71243935 Msa0138380:CDS
GGAAAAGCAAAGTTCTCTAA+AGG 0.503179 1_3:+71244159 Msa0138380:CDS
GAAGCTGTTACCACCGTATG+AGG 0.505127 1_3:-71243064 None:intergenic
ATTGGTGTTGCCAATCTAGC+AGG 0.509235 1_3:+71242462 Msa0138380:CDS
AGTTATCTTCGGTGGTATAG+TGG 0.510123 1_3:+71244117 Msa0138380:CDS
TATGGTACTTCGTGTCCATA+TGG 0.512922 1_3:-71243097 None:intergenic
TCCTTCCTATGATGGAAAGA+TGG 0.519596 1_3:+71245227 Msa0138380:three_prime_UTR
AAGTAAGATCACAAAGCCTA+AGG 0.519858 1_3:-71244002 None:intergenic
GGTGGTAACAGCTTCGGTTG+AGG 0.520485 1_3:+71243072 Msa0138380:CDS
CACTGAAATGAAATTTAATG+TGG 0.520500 1_3:-71239995 None:intergenic
ATGTCTGGTTTGGTTGGTAC+AGG 0.521130 1_3:+71243941 Msa0138380:CDS
TTGAAGGAAAATGAAGCTTA+GGG 0.521409 1_3:-71242876 None:intergenic
GCAAAATATCATGTATGGCT+AGG 0.522260 1_3:+71242177 Msa0138380:CDS
TGAGGTTCTGCCAATCAAGA+AGG 0.523056 1_3:+71242679 Msa0138380:CDS
TATATTGTATATATAGTAGC+AGG 0.523200 1_3:+71245291 Msa0138380:three_prime_UTR
TCATACGGTGGTAACAGCTT+CGG 0.525366 1_3:+71243066 Msa0138380:CDS
TGCTGATGACTAATCTCTCT+CGG 0.525459 1_3:-71245318 None:intergenic
AATCATATTTAAGATATTGT+CGG 0.526904 1_3:+71245697 Msa0138380:three_prime_UTR
AATATGATTACCTTCAACGA+AGG 0.530107 1_3:-71245683 None:intergenic
AGTCCTTTGCTTTCTAAGCA+AGG 0.530294 1_3:+71240218 Msa0138380:CDS
TTTATTTATACCGATTTCAA+GGG 0.530400 1_3:+71242110 Msa0138380:CDS
ATTTACTATATAAATCCAGT+TGG 0.531760 1_3:+71244037 Msa0138380:CDS
ATTCTCCATCGTGTGAGGGA+TGG 0.535286 1_3:+71243366 Msa0138380:CDS
TGGCCTAGAGCCATACTGTA+TGG 0.535994 1_3:-71244275 None:intergenic
GTTGCAGAAACAACCCCAAA+TGG 0.541339 1_3:-71241119 None:intergenic
TTTATCTGTTCAGCCTCATA+CGG 0.542802 1_3:+71243051 Msa0138380:CDS
ACTTCTTTCGACCGTTGACA+TGG 0.543973 1_3:+71243452 Msa0138380:CDS
TCACCTTGCTTAGAAAGCAA+AGG 0.544082 1_3:-71240221 None:intergenic
GACTCTTCTATGTTATTGAG+TGG 0.545334 1_3:+71242232 Msa0138380:CDS
GCAACACTTGACTGAAGAGT+TGG 0.545843 1_3:-71245120 None:intergenic
ATGACTGTGGAAATGGAAGA+TGG 0.548444 1_3:-71245187 None:intergenic
GAAAACCTTATATTAGTGGC+AGG 0.550053 1_3:+71243303 Msa0138380:CDS
CTACCATACAGTATGGCTCT+AGG 0.555352 1_3:+71244272 Msa0138380:CDS
TGCATACCTAATTATTTCTG+GGG 0.557842 1_3:+71240733 Msa0138380:CDS
GATGTTGGTATTCTAGTTTG+TGG 0.558214 1_3:+71245093 Msa0138380:CDS
AGAAATAATTAGGTATGCAA+TGG 0.558493 1_3:-71240729 None:intergenic
ACACTTGACTGAAGAGTTGG+AGG 0.558505 1_3:-71245117 None:intergenic
TTGGTTATATGGTGGTACAA+AGG 0.558838 1_3:+71244061 Msa0138380:CDS
ATGGCCCCATTTCTCTGACA+TGG 0.558908 1_3:-71245067 None:intergenic
AATGAAATTTAATGTGGGGA+TGG 0.559532 1_3:-71239989 None:intergenic
ATGAAATTTAATGTGGGGAT+GGG 0.559541 1_3:-71239988 None:intergenic
GGGCTAGAAGAAACACTGAA+TGG 0.559675 1_3:-71242929 None:intergenic
ATACCTAATTATTTCTGGGG+AGG 0.562304 1_3:+71240736 Msa0138380:CDS
GGGAATTATCGTGGCTTCAG+TGG 0.567364 1_3:+71242903 Msa0138380:CDS
TGTTATTATCTGCAGGAAGA+GGG 0.567707 1_3:+71243860 Msa0138380:intron
CCAGACATTCCATAATCACT+AGG 0.567995 1_3:-71243926 None:intergenic
TTCAAGTTCGGGAATTATCG+TGG 0.568443 1_3:+71242894 Msa0138380:CDS
ATCTGTTCAGCCTCATACGG+TGG 0.568522 1_3:+71243054 Msa0138380:CDS
CAATAACATAGAAGAGTCCA+TGG 0.569129 1_3:-71242227 None:intergenic
AAATGGCTTAATTTCAGCAG+TGG 0.569517 1_3:+71240395 Msa0138380:CDS
TTTCCATTGGTGAATGGTGA+AGG 0.571228 1_3:-71245258 None:intergenic
TCCATCTTTCCATCATAGGA+AGG 0.572392 1_3:-71245228 None:intergenic
TTAATCCAATCCCGCCCGAA+CGG 0.573743 1_3:-71242074 None:intergenic
AAAATATTTCTTGGTCGACA+AGG 0.574465 1_3:-71243393 None:intergenic
ACATCAACAAACCAGCTACA+AGG 0.574690 1_3:-71242494 None:intergenic
ATGTCAACGGTCGAAAGAAG+TGG 0.576179 1_3:-71243450 None:intergenic
TGTACATATCTTCGTCACTC+GGG 0.579762 1_3:+71243515 Msa0138380:CDS
TAATCACTAGGCATAGGAAA+GGG 0.580384 1_3:-71243914 None:intergenic
TTATGCTTGATCGATTTCTG+AGG 0.584264 1_3:+71242661 Msa0138380:CDS
TGACTGTGGAAATGGAAGAT+GGG 0.586819 1_3:-71245186 None:intergenic
GGATAAGTCCAATAACATCA+AGG 0.590579 1_3:+71244180 Msa0138380:CDS
TGGTAACAGCTTCGGTTGAG+GGG 0.591607 1_3:+71243074 Msa0138380:CDS
CCTTATCAATGGACCATTTG+GGG 0.593226 1_3:+71241106 Msa0138380:CDS
TCGGGAATCAGATCCTCCAT+TGG 0.593505 1_3:+71243533 Msa0138380:CDS
AATGGTCCATTGATAAGGAT+CGG 0.593738 1_3:-71241101 None:intergenic
CTCTATAAGGAACTCTGAGT+GGG 0.593858 1_3:+71245460 Msa0138380:three_prime_UTR
ATGTACATATCTTCGTCACT+CGG 0.595377 1_3:+71243514 Msa0138380:CDS
AAATGGCTCTGTGGATCACA+AGG 0.597424 1_3:+71244219 Msa0138380:CDS
ACAGATTGTTTCCATGTCAA+CGG 0.597655 1_3:-71243463 None:intergenic
ATTCCATAATCACTAGGCAT+AGG 0.598212 1_3:-71243920 None:intergenic
ACTGAAATGAAATTTAATGT+GGG 0.600368 1_3:-71239994 None:intergenic
CGATATTCTCCATCGTGTGA+GGG 0.600683 1_3:+71243362 Msa0138380:CDS
TCGCTCAATATAGCAAGGAA+AGG 0.600792 1_3:-71243342 None:intergenic
GTTATTGAGTGGCTAATGGA+AGG 0.601090 1_3:+71242243 Msa0138380:CDS
GCGATATTCTCCATCGTGTG+AGG 0.601408 1_3:+71243361 Msa0138380:CDS
ATAATCACTAGGCATAGGAA+AGG 0.604094 1_3:-71243915 None:intergenic
GGATGGGATAATATAGTAGA+GGG 0.606266 1_3:-71239972 None:intergenic
ATATGATTACCTTCAACGAA+GGG 0.606366 1_3:-71245682 None:intergenic
GGGATGGGATAATATAGTAG+AGG 0.606426 1_3:-71239973 None:intergenic
GGTTCTTGGCAAATGGACCG+GGG 0.607531 1_3:+71242988 Msa0138380:CDS
GCTACTACTTGTAGTCTGCA+TGG 0.612275 1_3:+71244084 Msa0138380:CDS
TCATCGAGGTGCCTTCCTTG+TGG 0.616387 1_3:+71242717 Msa0138380:CDS
CGTTCGCACTCCAGGAAGCG+AGG 0.620245 1_3:-71242523 None:intergenic
CAGTTGGATTGGTTATATGG+TGG 0.622983 1_3:+71244053 Msa0138380:CDS
GAATATCGCTCAATATAGCA+AGG 0.623134 1_3:-71243347 None:intergenic
GACTGTGGAAATGGAAGATG+GGG 0.624675 1_3:-71245185 None:intergenic
CGAAAGGGATATCTATGAAG+CGG 0.625285 1_3:-71242146 None:intergenic
TGTATTACCTGTGATTCCAA+AGG 0.625397 1_3:-71240423 None:intergenic
TTATTTATACCGATTTCAAG+GGG 0.626114 1_3:+71242111 Msa0138380:CDS
AGAGATCAAAGCTATGACTG+TGG 0.626232 1_3:-71245200 None:intergenic
TTACCATCAGAATCTGTGCA+TGG 0.626896 1_3:+71240362 Msa0138380:CDS
AAGCAAGGTGATAAAACTGA+CGG 0.627601 1_3:+71240233 Msa0138380:CDS
GCAGGTGTAGTTATCTTCGG+TGG 0.630037 1_3:+71244109 Msa0138380:CDS
ACTCTATAAGGAACTCTGAG+TGG 0.632677 1_3:+71245459 Msa0138380:three_prime_UTR
ACCATTTCCACAGTGCCACA+AGG 0.634007 1_3:-71242732 None:intergenic
AATCCATGCACAGATTCTGA+TGG 0.634212 1_3:-71240365 None:intergenic
AAAGTTAGACTAACCAATGG+AGG 0.635530 1_3:-71243546 None:intergenic
TAAGGATCGGAAAAGTCCAT+AGG 0.639419 1_3:-71241088 None:intergenic
GTTCTTGGCAAATGGACCGG+GGG 0.642988 1_3:+71242989 Msa0138380:CDS
TTTCCACAGTGCCACAAGGA+AGG 0.647154 1_3:-71242728 None:intergenic
AGTTATCATTTAGAGCCAAG+AGG 0.648631 1_3:+71241231 Msa0138380:CDS
ATACCTTCACCATTCACCAA+TGG 0.648646 1_3:+71245255 Msa0138380:three_prime_UTR
TTTACTTTATCAGAAAAGCG+TGG 0.652331 1_3:-71243486 None:intergenic
AAATGGGGCCATGTTGATGT+TGG 0.654368 1_3:+71245078 Msa0138380:CDS
TTAAGAGAAAGAATCACTGA+AGG 0.655743 1_3:+71243013 Msa0138380:CDS
GTGCCTTCCTTGTGGCACTG+TGG 0.660437 1_3:+71242725 Msa0138380:CDS
AATTGAGCAAAATGGCTCTG+TGG 0.663882 1_3:+71244210 Msa0138380:CDS
GAATCCATGTCAGAGAAATG+GGG 0.666449 1_3:+71245063 Msa0138380:CDS
GTTTCCCATCCCTCACACGA+TGG 0.667021 1_3:-71243371 None:intergenic
CTAGAATACCAACATCAACA+TGG 0.673063 1_3:-71245086 None:intergenic
AACCTTATATTAGTGGCAGG+CGG 0.680461 1_3:+71243306 Msa0138380:CDS
TTCTTGGCAAATGGACCGGG+GGG 0.692411 1_3:+71242990 Msa0138380:CDS
CTGAAATGAAATTTAATGTG+GGG 0.708329 1_3:-71239993 None:intergenic
ATGGCTAGGACACCTCACAA+TGG 0.732994 1_3:+71242191 Msa0138380:CDS
CAGTAAATGTAATCTCATCG+AGG 0.756992 1_3:+71242703 Msa0138380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTTTATTAGTTTATTT+GGG - chr1_3:71241398-71241417 None:intergenic 10.0%
!!! AAGAAATATTTTAATTGTTT+GGG + chr1_3:71243404-71243423 Msa0138380:CDS 10.0%
!!! AAAAAATGTCATATTTTTAT+CGG + chr1_3:71244686-71244705 Msa0138380:intron 10.0%
!! AATATTAATGTAGAAATATG+AGG - chr1_3:71240050-71240069 None:intergenic 15.0%
!! TTTCTACATTAATATTATCA+TGG + chr1_3:71240054-71240073 Msa0138380:five_prime_UTR 15.0%
!! TTCTACATTAATATTATCAT+GGG + chr1_3:71240055-71240074 Msa0138380:five_prime_UTR 15.0%
!!! AATTTCTGAAAATAAAGAAA+TGG - chr1_3:71241272-71241291 None:intergenic 15.0%
!!! GTTTCTTTTATTAGTTTATT+TGG - chr1_3:71241399-71241418 None:intergenic 15.0%
!!! CTTTTTAATTTTTCAGTTTA+TGG - chr1_3:71241564-71241583 None:intergenic 15.0%
!! TCTTTAATAAAAACAAACTA+GGG - chr1_3:71241704-71241723 None:intergenic 15.0%
!! AAAGTTAAAACTCTTAAAAT+GGG - chr1_3:71241819-71241838 None:intergenic 15.0%
!! AAAAGTTAAAACTCTTAAAA+TGG - chr1_3:71241820-71241839 None:intergenic 15.0%
!! ATTATGTAAAGATAAGTAAA+TGG - chr1_3:71242407-71242426 None:intergenic 15.0%
!! TTACTTATCTTTACATAATT+TGG + chr1_3:71242408-71242427 Msa0138380:intron 15.0%
!! CAATAAAGATTATGTATAAT+TGG - chr1_3:71242578-71242597 None:intergenic 15.0%
!! CAAACAATTAAAATATTTCT+TGG - chr1_3:71243405-71243424 None:intergenic 15.0%
!!! CAAGAAATATTTTAATTGTT+TGG + chr1_3:71243403-71243422 Msa0138380:CDS 15.0%
!! TAATGATAATATTCACATAA+AGG - chr1_3:71245501-71245520 None:intergenic 15.0%
!! AAAGAAAAACAAGTTTATAA+GGG - chr1_3:71245557-71245576 None:intergenic 15.0%
!! TAAAGAAAAACAAGTTTATA+AGG - chr1_3:71245558-71245577 None:intergenic 15.0%
!! AATAATATGTGCTTATAATT+TGG - chr1_3:71245594-71245613 None:intergenic 15.0%
!!! AATCATATTTAAGATATTGT+CGG + chr1_3:71245697-71245716 Msa0138380:three_prime_UTR 15.0%
!! ACTGAAATGAAATTTAATGT+GGG - chr1_3:71239997-71240016 None:intergenic 20.0%
!! AACACATAAAAATAGTAAGT+GGG - chr1_3:71240110-71240129 None:intergenic 20.0%
!! AAACACATAAAAATAGTAAG+TGG - chr1_3:71240111-71240130 None:intergenic 20.0%
!! TTTCCATAATCTTCATTATA+TGG + chr1_3:71240321-71240340 Msa0138380:CDS 20.0%
!! TTCCATAATCTTCATTATAT+GGG + chr1_3:71240322-71240341 Msa0138380:CDS 20.0%
!! TAAAAACAAAACAAGATAGT+AGG - chr1_3:71240527-71240546 None:intergenic 20.0%
!! ACATAATAATGAAACATGAT+TGG - chr1_3:71240855-71240874 None:intergenic 20.0%
!!! GAAATTAATTCGAGTTTAAT+TGG - chr1_3:71240986-71241005 None:intergenic 20.0%
!!! TTTTGATATTGTTTTTGACA+TGG + chr1_3:71241022-71241041 Msa0138380:intron 20.0%
!!! TTTTTTTGGCATATGTTATT+TGG + chr1_3:71241162-71241181 Msa0138380:CDS 20.0%
!!! TTTTTTGGCATATGTTATTT+GGG + chr1_3:71241163-71241182 Msa0138380:CDS 20.0%
!!! ATGCAAATTACTTTGTTTAA+TGG + chr1_3:71241301-71241320 Msa0138380:intron 20.0%
!! TAAAGAAAAAAATTCATGCA+TGG - chr1_3:71241327-71241346 None:intergenic 20.0%
!! ATTCCAATATGAATTGAAAT+TGG + chr1_3:71241464-71241483 Msa0138380:intron 20.0%
!! CTCTTTAATAAAAACAAACT+AGG - chr1_3:71241705-71241724 None:intergenic 20.0%
!! AAGTTAAAACTCTTAAAATG+GGG - chr1_3:71241818-71241837 None:intergenic 20.0%
!!! AAAAATCAATTTGAAGCAAA+AGG - chr1_3:71241880-71241899 None:intergenic 20.0%
!! ATATGATAAGTTAATTTACC+TGG + chr1_3:71242004-71242023 Msa0138380:intron 20.0%
!!! TTTTATTTATACCGATTTCA+AGG + chr1_3:71242109-71242128 Msa0138380:CDS 20.0%
!!! TTTATTTATACCGATTTCAA+GGG + chr1_3:71242110-71242129 Msa0138380:CDS 20.0%
!! TTATTAGAATGGAAAGATAT+TGG + chr1_3:71242444-71242463 Msa0138380:CDS 20.0%
!! TCAAGCATAAAAAGAAATAT+TGG - chr1_3:71242651-71242670 None:intergenic 20.0%
!! AAATAAGTATACTTACTTTG+TGG - chr1_3:71242768-71242787 None:intergenic 20.0%
!! TATATTGTCACTGTTATATA+TGG - chr1_3:71242825-71242844 None:intergenic 20.0%
!! ATTTACTATATAAATCCAGT+TGG + chr1_3:71244037-71244056 Msa0138380:CDS 20.0%
!! TCTTAATATCAATACATGAA+AGG + chr1_3:71244342-71244361 Msa0138380:intron 20.0%
!! GATACAAAACTAAATCAAAT+CGG + chr1_3:71244419-71244438 Msa0138380:intron 20.0%
!! ATGATTCATAAGAATGAATT+GGG - chr1_3:71244514-71244533 None:intergenic 20.0%
!! AATGATTCATAAGAATGAAT+TGG - chr1_3:71244515-71244534 None:intergenic 20.0%
!!! ATAGTAAGATACTTTTTTTG+TGG + chr1_3:71244576-71244595 Msa0138380:intron 20.0%
!! TATATTGTATATATAGTAGC+AGG + chr1_3:71245291-71245310 Msa0138380:three_prime_UTR 20.0%
!!! AATATTTTGCACTTGTAATA+TGG + chr1_3:71245353-71245372 Msa0138380:three_prime_UTR 20.0%
! CTGAAATGAAATTTAATGTG+GGG - chr1_3:71239996-71240015 None:intergenic 25.0%
! CACTGAAATGAAATTTAATG+TGG - chr1_3:71239998-71240017 None:intergenic 25.0%
! CACATTAAATTTCATTTCAG+TGG + chr1_3:71239996-71240015 Msa0138380:five_prime_UTR 25.0%
! TGAGGATCATAAAAAATGTT+GGG - chr1_3:71240032-71240051 None:intergenic 25.0%
! ATGAGGATCATAAAAAATGT+TGG - chr1_3:71240033-71240052 None:intergenic 25.0%
! TGAGTAATTTCTTGTAACTA+TGG + chr1_3:71240175-71240194 Msa0138380:exon 25.0%
!!! TGATTTCTTGCTTTTTGTTT+TGG + chr1_3:71240465-71240484 Msa0138380:intron 25.0%
!!! AATCTTGTTTTTTCACTATG+TGG + chr1_3:71240618-71240637 Msa0138380:intron 25.0%
! AGAAATAATTAGGTATGCAA+TGG - chr1_3:71240732-71240751 None:intergenic 25.0%
! ATTGCATACCTAATTATTTC+TGG + chr1_3:71240731-71240750 Msa0138380:CDS 25.0%
!! TTGCATACCTAATTATTTCT+GGG + chr1_3:71240732-71240751 Msa0138380:CDS 25.0%
! ATTAATCCAATGTACAGATA+CGG - chr1_3:71240797-71240816 None:intergenic 25.0%
!! GATATCTGTAGACATATTTT+AGG - chr1_3:71240896-71240915 None:intergenic 25.0%
!!! CATTGGAATTGTCATTTTTT+TGG + chr1_3:71241148-71241167 Msa0138380:CDS 25.0%
!!! TAATTTTTCAGTTTATGGAG+AGG - chr1_3:71241559-71241578 None:intergenic 25.0%
! AGAAAAATATTTGCAAACTC+TGG - chr1_3:71241657-71241676 None:intergenic 25.0%
!!! CTAACTCATTTTTACAAAAC+CGG - chr1_3:71241794-71241813 None:intergenic 25.0%
! TTAAAACAAGAATCTTGACA+TGG + chr1_3:71241838-71241857 Msa0138380:intron 25.0%
! AAATTACATGATCATTGCAA+AGG - chr1_3:71241971-71241990 None:intergenic 25.0%
! GAAAAAAAGTTAAGTAAACC+AGG - chr1_3:71242025-71242044 None:intergenic 25.0%
!!! TTATTTATACCGATTTCAAG+GGG + chr1_3:71242111-71242130 Msa0138380:CDS 25.0%
! CATAATCTTTATTGTGTTCA+TGG + chr1_3:71242584-71242603 Msa0138380:CDS 25.0%
!!! TGTGATTTTTTCCATCTAAA+GGG - chr1_3:71242952-71242971 None:intergenic 25.0%
!!! ATGTGATTTTTTCCATCTAA+AGG - chr1_3:71242953-71242972 None:intergenic 25.0%
!! AGTTAGCTTAAAATCTACTT+TGG - chr1_3:71243212-71243231 None:intergenic 25.0%
!! TGTGTTCATTTTGTTCTATT+AGG + chr1_3:71243277-71243296 Msa0138380:intron 25.0%
! CCTTTCTATTATTCAAAGTT+AGG - chr1_3:71243694-71243713 None:intergenic 25.0%
! CCTAACTTTGAATAATAGAA+AGG + chr1_3:71243691-71243710 Msa0138380:intron 25.0%
!!! CTTTTGAATGTTTAAAACCA+CGG + chr1_3:71243809-71243828 Msa0138380:intron 25.0%
!! ATTTGATTGTTATTATCTGC+AGG + chr1_3:71243853-71243872 Msa0138380:intron 25.0%
! TTTATCAACCTTGATGTTAT+TGG - chr1_3:71244191-71244210 None:intergenic 25.0%
!! GTTGATAAAATTGAGCAAAA+TGG + chr1_3:71244202-71244221 Msa0138380:CDS 25.0%
!!! GAAAATATACCTTTAAAGTC+TGG - chr1_3:71244298-71244317 None:intergenic 25.0%
!! AGTACCTTTTTATCTTACAA+TGG - chr1_3:71245424-71245443 None:intergenic 25.0%
!! AAGGTACTATAATCCTTAAA+AGG + chr1_3:71245436-71245455 Msa0138380:three_prime_UTR 25.0%
! AAACAAGTTTATAAGGGTTA+TGG - chr1_3:71245551-71245570 None:intergenic 25.0%
ATGAAATTTAATGTGGGGAT+GGG - chr1_3:71239991-71240010 None:intergenic 30.0%
AATGAAATTTAATGTGGGGA+TGG - chr1_3:71239992-71240011 None:intergenic 30.0%
GGAAAAAGATGAAAACATTG+TGG - chr1_3:71240083-71240102 None:intergenic 30.0%
TAAAAATAGTAAGTGGGAGA+AGG - chr1_3:71240104-71240123 None:intergenic 30.0%
AGCCCATATAATGAAGATTA+TGG - chr1_3:71240327-71240346 None:intergenic 30.0%
!!! CTTGCTTTTTGTTTTGGTTT+TGG + chr1_3:71240471-71240490 Msa0138380:intron 30.0%
!! TGCATACCTAATTATTTCTG+GGG + chr1_3:71240733-71240752 Msa0138380:CDS 30.0%
TATGTAGAAATCACATACTC+AGG - chr1_3:71240770-71240789 None:intergenic 30.0%
TGATTGGATATTTACACTGA+CGG - chr1_3:71240839-71240858 None:intergenic 30.0%
! GTTTTTGACATGGATTTTGA+TGG + chr1_3:71241032-71241051 Msa0138380:intron 30.0%
TTTCTATGCTTATACTATGC+AGG + chr1_3:71241187-71241206 Msa0138380:CDS 30.0%
TAGTGAGATTAAGATAACAC+TGG + chr1_3:71241432-71241451 Msa0138380:intron 30.0%
CCTCCAATTTCAATTCATAT+TGG - chr1_3:71241470-71241489 None:intergenic 30.0%
CCAATATGAATTGAAATTGG+AGG + chr1_3:71241467-71241486 Msa0138380:intron 30.0%
GCATAGAAGTCTCAAAATTT+GGG - chr1_3:71241600-71241619 None:intergenic 30.0%
AGCATAGAAGTCTCAAAATT+TGG - chr1_3:71241601-71241620 None:intergenic 30.0%
TTTATTAAAGAGTCCCACAT+CGG + chr1_3:71241713-71241732 Msa0138380:intron 30.0%
TCTGAACACGTGTTTATAAA+TGG + chr1_3:71241748-71241767 Msa0138380:intron 30.0%
CTGAACACGTGTTTATAAAT+GGG + chr1_3:71241749-71241768 Msa0138380:intron 30.0%
TGAACACGTGTTTATAAATG+GGG + chr1_3:71241750-71241769 Msa0138380:intron 30.0%
!! CGGTTTTGTAAAAATGAGTT+AGG + chr1_3:71241792-71241811 Msa0138380:intron 30.0%
GTCAGTAATACTTAAGACAA+AGG - chr1_3:71241904-71241923 None:intergenic 30.0%
! TTGCACATGTTGGAAATTTT+GGG + chr1_3:71242048-71242067 Msa0138380:CDS 30.0%
ATGCTGCAAAATATCATGTA+TGG + chr1_3:71242172-71242191 Msa0138380:CDS 30.0%
TGTTATCCTAAATCCTTCAA+AGG + chr1_3:71242349-71242368 Msa0138380:intron 30.0%
TAATCAACAACTACCTTTGA+AGG - chr1_3:71242365-71242384 None:intergenic 30.0%
! CAAAGGTAGTTGTTGATTAT+TGG + chr1_3:71242366-71242385 Msa0138380:intron 30.0%
TCCATTCTAATAACTGCAAA+GGG - chr1_3:71242437-71242456 None:intergenic 30.0%
TTCCATTCTAATAACTGCAA+AGG - chr1_3:71242438-71242457 None:intergenic 30.0%
TTGAAGGAAAATGAAGCTTA+GGG - chr1_3:71242879-71242898 None:intergenic 30.0%
TTAAGAGAAAGAATCACTGA+AGG + chr1_3:71243013-71243032 Msa0138380:CDS 30.0%
GTACGAAAACCTTATATTAG+TGG + chr1_3:71243299-71243318 Msa0138380:CDS 30.0%
AAAATATTTCTTGGTCGACA+AGG - chr1_3:71243396-71243415 None:intergenic 30.0%
TTTACTTTATCAGAAAAGCG+TGG - chr1_3:71243489-71243508 None:intergenic 30.0%
TAGAAAGTTAGACTAACCAA+TGG - chr1_3:71243552-71243571 None:intergenic 30.0%
!! TTTCTTCGATTTGTGTCTTT+TGG + chr1_3:71243587-71243606 Msa0138380:intron 30.0%
! TATGTCATTTCATCTACCTT+AGG + chr1_3:71243986-71244005 Msa0138380:CDS 30.0%
CTATATAAATCCAGTTGGAT+TGG + chr1_3:71244042-71244061 Msa0138380:CDS 30.0%
AAGTTAACTACCATACAGTA+TGG + chr1_3:71244265-71244284 Msa0138380:CDS 30.0%
! TTTTATCGGTAGTGTATCTT+AGG + chr1_3:71244700-71244719 Msa0138380:intron 30.0%
CGATTCACGATTTGAAAAAT+TGG + chr1_3:71244738-71244757 Msa0138380:intron 30.0%
TGTAAAAAAGGGACTAATAC+TGG - chr1_3:71244995-71245014 None:intergenic 30.0%
! ATATATGCATGCTTTTCCAT+TGG - chr1_3:71245274-71245293 None:intergenic 30.0%
CAGTCCATTGTAAGATAAAA+AGG + chr1_3:71245417-71245436 Msa0138380:three_prime_UTR 30.0%
ATCCTTAAAAGGACTCTATA+AGG + chr1_3:71245447-71245466 Msa0138380:three_prime_UTR 30.0%
! TTCCTTATAGAGTCCTTTTA+AGG - chr1_3:71245452-71245471 None:intergenic 30.0%
ATATGATTACCTTCAACGAA+GGG - chr1_3:71245685-71245704 None:intergenic 30.0%
AATATGATTACCTTCAACGA+AGG - chr1_3:71245686-71245705 None:intergenic 30.0%
GGATGGGATAATATAGTAGA+GGG - chr1_3:71239975-71239994 None:intergenic 35.0%
AAGCAAGGTGATAAAACTGA+CGG + chr1_3:71240233-71240252 Msa0138380:CDS 35.0%
GTAGCTGACACAACAAAATT+AGG - chr1_3:71240278-71240297 None:intergenic 35.0%
TTGTTGTGTCAGCTACTAAA+TGG + chr1_3:71240282-71240301 Msa0138380:CDS 35.0%
! TGCATGGATTGTTCACAAAA+TGG + chr1_3:71240378-71240397 Msa0138380:CDS 35.0%
AAATGGCTTAATTTCAGCAG+TGG + chr1_3:71240395-71240414 Msa0138380:CDS 35.0%
TGTATTACCTGTGATTCCAA+AGG - chr1_3:71240426-71240445 None:intergenic 35.0%
AGAAATGCAATTGCAAGAAC+AGG - chr1_3:71240707-71240726 None:intergenic 35.0%
!! ATACCTAATTATTTCTGGGG+AGG + chr1_3:71240736-71240755 Msa0138380:CDS 35.0%
TACTTTCCGTATCTGTACAT+TGG + chr1_3:71240788-71240807 Msa0138380:intron 35.0%
! ACTTTTCCGATCCTTATCAA+TGG + chr1_3:71241095-71241114 Msa0138380:CDS 35.0%
AATGGTCCATTGATAAGGAT+CGG - chr1_3:71241104-71241123 None:intergenic 35.0%
ATCCTTATCAATGGACCATT+TGG + chr1_3:71241104-71241123 Msa0138380:CDS 35.0%
TCCTTATCAATGGACCATTT+GGG + chr1_3:71241105-71241124 Msa0138380:CDS 35.0%
! AGTTATCATTTAGAGCCAAG+AGG + chr1_3:71241231-71241250 Msa0138380:CDS 35.0%
TTCTAAACTGTAGTACCTCT+TGG - chr1_3:71241249-71241268 None:intergenic 35.0%
TTGACAGTGCTTATTAACCA+CGG + chr1_3:71241525-71241544 Msa0138380:intron 35.0%
!!! ATTTTGAGACTTCTATGCTG+AGG + chr1_3:71241602-71241621 Msa0138380:intron 35.0%
ACTGACAATAGTCATTAGCA+TGG + chr1_3:71241918-71241937 Msa0138380:intron 35.0%
!!! TTTTTTCAGCTTGCACATGT+TGG + chr1_3:71242038-71242057 Msa0138380:intron 35.0%
! CTTGCACATGTTGGAAATTT+TGG + chr1_3:71242047-71242066 Msa0138380:CDS 35.0%
! ATTTTGCAGCATGTTCGAAA+GGG - chr1_3:71242164-71242183 None:intergenic 35.0%
! TATTTTGCAGCATGTTCGAA+AGG - chr1_3:71242165-71242184 None:intergenic 35.0%
GCAAAATATCATGTATGGCT+AGG + chr1_3:71242177-71242196 Msa0138380:CDS 35.0%
GAGTAAAAATCACCATTGTG+AGG - chr1_3:71242206-71242225 None:intergenic 35.0%
! ATGGTGATTTTTACTCTCCA+TGG + chr1_3:71242210-71242229 Msa0138380:CDS 35.0%
CAATAACATAGAAGAGTCCA+TGG - chr1_3:71242230-71242249 None:intergenic 35.0%
GACTCTTCTATGTTATTGAG+TGG + chr1_3:71242232-71242251 Msa0138380:CDS 35.0%
CTATGTTATTGAGTGGCTAA+TGG + chr1_3:71242239-71242258 Msa0138380:CDS 35.0%
GAAGACTCACTTCTTGAATT+AGG - chr1_3:71242272-71242291 None:intergenic 35.0%
! CAACTACCTTTGAAGGATTT+AGG - chr1_3:71242358-71242377 None:intergenic 35.0%
CATTCTAATAACTGCAAAGG+GGG - chr1_3:71242435-71242454 None:intergenic 35.0%
CCATTCTAATAACTGCAAAG+GGG - chr1_3:71242436-71242455 None:intergenic 35.0%
!!! TGGCGACTTTATTTTTGCTA+TGG + chr1_3:71242617-71242636 Msa0138380:CDS 35.0%
!!! TTTATTTTTGCTATGGCTGC+TGG + chr1_3:71242624-71242643 Msa0138380:CDS 35.0%
! TTATGCTTGATCGATTTCTG+AGG + chr1_3:71242661-71242680 Msa0138380:CDS 35.0%
CATTTACTGTCCTTCTTGAT+TGG - chr1_3:71242692-71242711 None:intergenic 35.0%
CAGTAAATGTAATCTCATCG+AGG + chr1_3:71242703-71242722 Msa0138380:CDS 35.0%
CTTGAAGGAAAATGAAGCTT+AGG - chr1_3:71242880-71242899 None:intergenic 35.0%
!! GCTTCATTTTCCTTCAAGTT+CGG + chr1_3:71242882-71242901 Msa0138380:CDS 35.0%
!! CTTCATTTTCCTTCAAGTTC+GGG + chr1_3:71242883-71242902 Msa0138380:CDS 35.0%
! TCACATTGCTGTTCTCATTA+AGG + chr1_3:71242967-71242986 Msa0138380:CDS 35.0%
TCATTAAGGTTCTTGGCAAA+TGG + chr1_3:71242981-71243000 Msa0138380:CDS 35.0%
TTTATCTGTTCAGCCTCATA+CGG + chr1_3:71243051-71243070 Msa0138380:CDS 35.0%
ACCATATCACTTGATGTAAG+TGG + chr1_3:71243114-71243133 Msa0138380:intron 35.0%
GAAAACCTTATATTAGTGGC+AGG + chr1_3:71243303-71243322 Msa0138380:CDS 35.0%
GAATATCGCTCAATATAGCA+AGG - chr1_3:71243350-71243369 None:intergenic 35.0%
ACAGATTGTTTCCATGTCAA+CGG - chr1_3:71243466-71243485 None:intergenic 35.0%
ATGTACATATCTTCGTCACT+CGG + chr1_3:71243514-71243533 Msa0138380:CDS 35.0%
AAAGTTAGACTAACCAATGG+AGG - chr1_3:71243549-71243568 None:intergenic 35.0%
! TTGTTATTATCTGCAGGAAG+AGG + chr1_3:71243859-71243878 Msa0138380:intron 35.0%
TGTTATTATCTGCAGGAAGA+GGG + chr1_3:71243860-71243879 Msa0138380:intron 35.0%
! AAGGGACAGAGTGATTTTAT+TGG - chr1_3:71243899-71243918 None:intergenic 35.0%
TAATCACTAGGCATAGGAAA+GGG - chr1_3:71243917-71243936 None:intergenic 35.0%
ATAATCACTAGGCATAGGAA+AGG - chr1_3:71243918-71243937 None:intergenic 35.0%
TTTCCTATGCCTAGTGATTA+TGG + chr1_3:71243917-71243936 Msa0138380:CDS 35.0%
ATTCCATAATCACTAGGCAT+AGG - chr1_3:71243923-71243942 None:intergenic 35.0%
TGATTATGGAATGTCTGGTT+TGG + chr1_3:71243931-71243950 Msa0138380:CDS 35.0%
TTGGTACAGGAAACAATTTC+TGG + chr1_3:71243954-71243973 Msa0138380:CDS 35.0%
AAGTAAGATCACAAAGCCTA+AGG - chr1_3:71244005-71244024 None:intergenic 35.0%
!! ATCCAGTTGGATTGGTTATA+TGG + chr1_3:71244050-71244069 Msa0138380:CDS 35.0%
TTGGTTATATGGTGGTACAA+AGG + chr1_3:71244061-71244080 Msa0138380:CDS 35.0%
TGGTTATATGGTGGTACAAA+GGG + chr1_3:71244062-71244081 Msa0138380:CDS 35.0%
GGAAAAGCAAAGTTCTCTAA+AGG + chr1_3:71244159-71244178 Msa0138380:CDS 35.0%
GGATAAGTCCAATAACATCA+AGG + chr1_3:71244180-71244199 Msa0138380:CDS 35.0%
TACATGAAAGGACTATTGTG+TGG + chr1_3:71244354-71244373 Msa0138380:intron 35.0%
ATCAAATCGGTATGAATCTC+TGG + chr1_3:71244432-71244451 Msa0138380:intron 35.0%
TGTCTGACTACACTAAGTTT+AGG - chr1_3:71244539-71244558 None:intergenic 35.0%
TCGTGAATCGAATCTTACTA+TGG - chr1_3:71244728-71244747 None:intergenic 35.0%
TGCAAAATAAGCTCAAAGCA+AGG - chr1_3:71244799-71244818 None:intergenic 35.0%
CGATTCACGATTTGAAAAGT+AGG + chr1_3:71244842-71244861 Msa0138380:intron 35.0%
!!! TTAGTCCCTTTTTTACAACG+TGG + chr1_3:71244998-71245017 Msa0138380:intron 35.0%
CTCTTCCACGTTGTAAAAAA+GGG - chr1_3:71245006-71245025 None:intergenic 35.0%
TTGAATCCATGTCAGAGAAA+TGG + chr1_3:71245061-71245080 Msa0138380:CDS 35.0%
TGAATCCATGTCAGAGAAAT+GGG + chr1_3:71245062-71245081 Msa0138380:CDS 35.0%
CTAGAATACCAACATCAACA+TGG - chr1_3:71245089-71245108 None:intergenic 35.0%
!! GATGTTGGTATTCTAGTTTG+TGG + chr1_3:71245093-71245112 Msa0138380:CDS 35.0%
GGGATGGGATAATATAGTAG+AGG - chr1_3:71239976-71239995 None:intergenic 40.0%
AGTCCTTTGCTTTCTAAGCA+AGG + chr1_3:71240218-71240237 Msa0138380:CDS 40.0%
TCACCTTGCTTAGAAAGCAA+AGG - chr1_3:71240224-71240243 None:intergenic 40.0%
! CAGCTACTAAATGGACTCTT+AGG + chr1_3:71240291-71240310 Msa0138380:CDS 40.0%
TTACCATCAGAATCTGTGCA+TGG + chr1_3:71240362-71240381 Msa0138380:CDS 40.0%
AATCCATGCACAGATTCTGA+TGG - chr1_3:71240368-71240387 None:intergenic 40.0%
AAACTACTTGTGTGTTGTGC+AGG + chr1_3:71240656-71240675 Msa0138380:intron 40.0%
GATCCTCCCCAGAAATAATT+AGG - chr1_3:71240742-71240761 None:intergenic 40.0%
!! TTGACATGGATTTTGATGGC+AGG + chr1_3:71241036-71241055 Msa0138380:intron 40.0%
TAGGCGAAATCTTGGATACT+TGG - chr1_3:71241072-71241091 None:intergenic 40.0%
AGTATCCAAGATTTCGCCTA+TGG + chr1_3:71241072-71241091 Msa0138380:CDS 40.0%
AAAGTCCATAGGCGAAATCT+TGG - chr1_3:71241080-71241099 None:intergenic 40.0%
TAAGGATCGGAAAAGTCCAT+AGG - chr1_3:71241091-71241110 None:intergenic 40.0%
CCTTATCAATGGACCATTTG+GGG + chr1_3:71241106-71241125 Msa0138380:CDS 40.0%
AACCTCTTGAAACCAGTCTT+TGG + chr1_3:71241346-71241365 Msa0138380:intron 40.0%
!! TACCAAAGACTGGTTTCAAG+AGG - chr1_3:71241351-71241370 None:intergenic 40.0%
AACCAGTCTTTGGTACGTTA+AGG + chr1_3:71241356-71241375 Msa0138380:intron 40.0%
TTCCTTAACGTACCAAAGAC+TGG - chr1_3:71241361-71241380 None:intergenic 40.0%
CAGTTTATGGAGAGGATTGT+TGG - chr1_3:71241551-71241570 None:intergenic 40.0%
! AGCCATATTTTGTCCGATGT+GGG - chr1_3:71241729-71241748 None:intergenic 40.0%
AGAACAGATCCCCTTGAAAT+CGG - chr1_3:71242123-71242142 None:intergenic 40.0%
CGAAAGGGATATCTATGAAG+CGG - chr1_3:71242149-71242168 None:intergenic 40.0%
GTTATTGAGTGGCTAATGGA+AGG + chr1_3:71242243-71242262 Msa0138380:CDS 40.0%
CCCCTTTGCAGTTATTAGAA+TGG + chr1_3:71242433-71242452 Msa0138380:intron 40.0%
ACATCAACAAACCAGCTACA+AGG - chr1_3:71242497-71242516 None:intergenic 40.0%
!! TTGTAGCTGGTTTGTTGATG+TGG + chr1_3:71242496-71242515 Msa0138380:CDS 40.0%
!! TGTAGCTGGTTTGTTGATGT+GGG + chr1_3:71242497-71242516 Msa0138380:CDS 40.0%
! GTGTTCATGGCTTTGCATAT+TGG + chr1_3:71242597-71242616 Msa0138380:CDS 40.0%
ACGATAATTCCCGAACTTGA+AGG - chr1_3:71242895-71242914 None:intergenic 40.0%
! TTCAAGTTCGGGAATTATCG+TGG + chr1_3:71242894-71242913 Msa0138380:CDS 40.0%
GTTTCTTCTAGCCCTTTAGA+TGG + chr1_3:71242938-71242957 Msa0138380:CDS 40.0%
GCTGTTCTCATTAAGGTTCT+TGG + chr1_3:71242974-71242993 Msa0138380:CDS 40.0%
TATGGTACTTCGTGTCCATA+TGG - chr1_3:71243100-71243119 None:intergenic 40.0%
GCCACTTACATCAAGTGATA+TGG - chr1_3:71243118-71243137 None:intergenic 40.0%
AACCTTATATTAGTGGCAGG+CGG + chr1_3:71243306-71243325 Msa0138380:CDS 40.0%
TCGCTCAATATAGCAAGGAA+AGG - chr1_3:71243345-71243364 None:intergenic 40.0%
TGTACATATCTTCGTCACTC+GGG + chr1_3:71243515-71243534 Msa0138380:CDS 40.0%
! ATGTTTAAAACCACGGTCGT+CGG + chr1_3:71243816-71243835 Msa0138380:intron 40.0%
CCAGACATTCCATAATCACT+AGG - chr1_3:71243929-71243948 None:intergenic 40.0%
CCTAGTGATTATGGAATGTC+TGG + chr1_3:71243926-71243945 Msa0138380:CDS 40.0%
!! TATGGAATGTCTGGTTTGGT+TGG + chr1_3:71243935-71243954 Msa0138380:CDS 40.0%
!! ACAGGAAACAATTTCTGGTC+TGG + chr1_3:71243959-71243978 Msa0138380:CDS 40.0%
CACCATATAACCAATCCAAC+TGG - chr1_3:71244055-71244074 None:intergenic 40.0%
!! CAGTTGGATTGGTTATATGG+TGG + chr1_3:71244053-71244072 Msa0138380:CDS 40.0%
GTTGCAGGTGTAGTTATCTT+CGG + chr1_3:71244106-71244125 Msa0138380:CDS 40.0%
AGTTATCTTCGGTGGTATAG+TGG + chr1_3:71244117-71244136 Msa0138380:CDS 40.0%
! GTGGTATAGTGGTTGGATTT+TGG + chr1_3:71244128-71244147 Msa0138380:CDS 40.0%
!! TGGTTGGATTTTGGCATATG+TGG + chr1_3:71244137-71244156 Msa0138380:CDS 40.0%
!! GGTTGGATTTTGGCATATGT+GGG + chr1_3:71244138-71244157 Msa0138380:CDS 40.0%
! AATTGAGCAAAATGGCTCTG+TGG + chr1_3:71244210-71244229 Msa0138380:CDS 40.0%
TGGGATTCACCATAGAGAAT+CGG - chr1_3:71244495-71244514 None:intergenic 40.0%
CCTCTTCCACGTTGTAAAAA+AGG - chr1_3:71245007-71245026 None:intergenic 40.0%
!!! CCTTTTTTACAACGTGGAAG+AGG + chr1_3:71245004-71245023 Msa0138380:intron 40.0%
GAATCCATGTCAGAGAAATG+GGG + chr1_3:71245063-71245082 Msa0138380:CDS 40.0%
! CAAGTGTTGCACAAGAAATC+AGG + chr1_3:71245133-71245152 Msa0138380:CDS 40.0%
AAATGGAAGATGGGGTGATA+AGG - chr1_3:71245180-71245199 None:intergenic 40.0%
TGACTGTGGAAATGGAAGAT+GGG - chr1_3:71245189-71245208 None:intergenic 40.0%
ATGACTGTGGAAATGGAAGA+TGG - chr1_3:71245190-71245209 None:intergenic 40.0%
CAAAGCTATGACTGTGGAAA+TGG - chr1_3:71245197-71245216 None:intergenic 40.0%
AGAGATCAAAGCTATGACTG+TGG - chr1_3:71245203-71245222 None:intergenic 40.0%
! TCCTTCCTATGATGGAAAGA+TGG + chr1_3:71245227-71245246 Msa0138380:three_prime_UTR 40.0%
TCCATCTTTCCATCATAGGA+AGG - chr1_3:71245231-71245250 None:intergenic 40.0%
GTCTTCCATCTTTCCATCAT+AGG - chr1_3:71245235-71245254 None:intergenic 40.0%
ATACCTTCACCATTCACCAA+TGG + chr1_3:71245255-71245274 Msa0138380:three_prime_UTR 40.0%
TTTCCATTGGTGAATGGTGA+AGG - chr1_3:71245261-71245280 None:intergenic 40.0%
! CATGCTTTTCCATTGGTGAA+TGG - chr1_3:71245267-71245286 None:intergenic 40.0%
TGCTGATGACTAATCTCTCT+CGG - chr1_3:71245321-71245340 None:intergenic 40.0%
ACTCTATAAGGAACTCTGAG+TGG + chr1_3:71245459-71245478 Msa0138380:three_prime_UTR 40.0%
CTCTATAAGGAACTCTGAGT+GGG + chr1_3:71245460-71245479 Msa0138380:three_prime_UTR 40.0%
CTATATGTTCCCTTCGTTGA+AGG + chr1_3:71245673-71245692 Msa0138380:three_prime_UTR 40.0%
TTCAGCAGTGGAACTTCCTT+TGG + chr1_3:71240407-71240426 Msa0138380:CDS 45.0%
!! GGAACTTCCTTTGGAATCAC+AGG + chr1_3:71240416-71240435 Msa0138380:CDS 45.0%
CCCCAAATGGTCCATTGATA+AGG - chr1_3:71241109-71241128 None:intergenic 45.0%
GTTGCAGAAACAACCCCAAA+TGG - chr1_3:71241122-71241141 None:intergenic 45.0%
GTTTCTGCAACAGAGCTCAT+TGG + chr1_3:71241131-71241150 Msa0138380:CDS 45.0%
GTCCCACATCGGACAAAATA+TGG + chr1_3:71241724-71241743 Msa0138380:intron 45.0%
! GAGCCATATTTTGTCCGATG+TGG - chr1_3:71241730-71241749 None:intergenic 45.0%
GTAATCCTCATCTCACAAGC+CGG + chr1_3:71241772-71241791 Msa0138380:intron 45.0%
!!! GGAAATTTTGGGACTCCGTT+CGG + chr1_3:71242059-71242078 Msa0138380:CDS 45.0%
!!! GAAATTTTGGGACTCCGTTC+GGG + chr1_3:71242060-71242079 Msa0138380:CDS 45.0%
CGGGATTGGATTAATGTGCT+TGG + chr1_3:71242083-71242102 Msa0138380:CDS 45.0%
!! ATTGGTGTTGCCAATCTAGC+AGG + chr1_3:71242462-71242481 Msa0138380:CDS 45.0%
GCTGATAACTCCTGCTAGAT+TGG - chr1_3:71242475-71242494 None:intergenic 45.0%
TGAGGTTCTGCCAATCAAGA+AGG + chr1_3:71242679-71242698 Msa0138380:CDS 45.0%
GGGCTAGAAGAAACACTGAA+TGG - chr1_3:71242932-71242951 None:intergenic 45.0%
AAGGTTCTTGGCAAATGGAC+CGG + chr1_3:71242986-71243005 Msa0138380:CDS 45.0%
GATTCTTTCTCTTAACCCCC+CGG - chr1_3:71243008-71243027 None:intergenic 45.0%
TCATACGGTGGTAACAGCTT+CGG + chr1_3:71243066-71243085 Msa0138380:CDS 45.0%
TACCGCCTGCCACTAATATA+AGG - chr1_3:71243311-71243330 None:intergenic 45.0%
ATATTAGTGGCAGGCGGTAT+TGG + chr1_3:71243312-71243331 Msa0138380:CDS 45.0%
CGATATTCTCCATCGTGTGA+GGG + chr1_3:71243362-71243381 Msa0138380:CDS 45.0%
ATGTCAACGGTCGAAAGAAG+TGG - chr1_3:71243453-71243472 None:intergenic 45.0%
ACTTCTTTCGACCGTTGACA+TGG + chr1_3:71243452-71243471 Msa0138380:CDS 45.0%
GTCGTAGATGTAGGCACAAT+TGG + chr1_3:71243735-71243754 Msa0138380:intron 45.0%
!! ATGTCTGGTTTGGTTGGTAC+AGG + chr1_3:71243941-71243960 Msa0138380:CDS 45.0%
GCTACTACTTGTAGTCTGCA+TGG + chr1_3:71244084-71244103 Msa0138380:CDS 45.0%
ATCTTCGGTGGTATAGTGGT+TGG + chr1_3:71244121-71244140 Msa0138380:CDS 45.0%
! AAATGGCTCTGTGGATCACA+AGG + chr1_3:71244219-71244238 Msa0138380:CDS 45.0%
CTACCATACAGTATGGCTCT+AGG + chr1_3:71244272-71244291 Msa0138380:CDS 45.0%
TCTTGAGTCCCGATTCTCTA+TGG + chr1_3:71244483-71244502 Msa0138380:intron 45.0%
GGGATTCACCATAGAGAATC+GGG - chr1_3:71244494-71244513 None:intergenic 45.0%
CGTGGAAGAGGTTACTGATA+TGG + chr1_3:71245016-71245035 Msa0138380:intron 45.0%
AAATGGGGCCATGTTGATGT+TGG + chr1_3:71245078-71245097 Msa0138380:CDS 45.0%
ACACTTGACTGAAGAGTTGG+AGG - chr1_3:71245120-71245139 None:intergenic 45.0%
GCAACACTTGACTGAAGAGT+TGG - chr1_3:71245123-71245142 None:intergenic 45.0%
GACTGTGGAAATGGAAGATG+GGG - chr1_3:71245188-71245207 None:intergenic 45.0%
! CTCTAGCTTCCTTCCTATGA+TGG + chr1_3:71245219-71245238 Msa0138380:exon 45.0%
!! CAAAACCGGCTTGTGAGATG+AGG - chr1_3:71241780-71241799 None:intergenic 50.0%
TTAATCCAATCCCGCCCGAA+CGG - chr1_3:71242077-71242096 None:intergenic 50.0%
ATGGCTAGGACACCTCACAA+TGG + chr1_3:71242191-71242210 Msa0138380:CDS 50.0%
! GGAGTTATCAGCCTTGTAGC+TGG + chr1_3:71242483-71242502 Msa0138380:CDS 50.0%
AAATTCCACGTTCGCACTCC+AGG - chr1_3:71242534-71242553 None:intergenic 50.0%
TTTCCACAGTGCCACAAGGA+AGG - chr1_3:71242731-71242750 None:intergenic 50.0%
TCCTTGTGGCACTGTGGAAA+TGG + chr1_3:71242731-71242750 Msa0138380:CDS 50.0%
ACCATTTCCACAGTGCCACA+AGG - chr1_3:71242735-71242754 None:intergenic 50.0%
GGGAATTATCGTGGCTTCAG+TGG + chr1_3:71242903-71242922 Msa0138380:CDS 50.0%
AGGTTCTTGGCAAATGGACC+GGG + chr1_3:71242987-71243006 Msa0138380:CDS 50.0%
ATCTGTTCAGCCTCATACGG+TGG + chr1_3:71243054-71243073 Msa0138380:CDS 50.0%
GAAGCTGTTACCACCGTATG+AGG - chr1_3:71243067-71243086 None:intergenic 50.0%
GTGGTAACAGCTTCGGTTGA+GGG + chr1_3:71243073-71243092 Msa0138380:CDS 50.0%
TGGTAACAGCTTCGGTTGAG+GGG + chr1_3:71243074-71243093 Msa0138380:CDS 50.0%
GCGATATTCTCCATCGTGTG+AGG + chr1_3:71243361-71243380 Msa0138380:CDS 50.0%
ATTCTCCATCGTGTGAGGGA+TGG + chr1_3:71243366-71243385 Msa0138380:CDS 50.0%
TTCTCCATCGTGTGAGGGAT+GGG + chr1_3:71243367-71243386 Msa0138380:CDS 50.0%
TCGGGAATCAGATCCTCCAT+TGG + chr1_3:71243533-71243552 Msa0138380:CDS 50.0%
CATCTACGACTGCAGAGAGT+GGG - chr1_3:71243725-71243744 None:intergenic 50.0%
ACATCTACGACTGCAGAGAG+TGG - chr1_3:71243726-71243745 None:intergenic 50.0%
CTCTCTGCAGTCGTAGATGT+AGG + chr1_3:71243726-71243745 Msa0138380:intron 50.0%
CTTGTAGTCTGCATGGTTGC+AGG + chr1_3:71244091-71244110 Msa0138380:CDS 50.0%
GCAGGTGTAGTTATCTTCGG+TGG + chr1_3:71244109-71244128 Msa0138380:CDS 50.0%
TGGCCTAGAGCCATACTGTA+TGG - chr1_3:71244278-71244297 None:intergenic 50.0%
!! GGCTCTAGGCCAGACTTTAA+AGG + chr1_3:71244286-71244305 Msa0138380:CDS 50.0%
ATGGCCCCATTTCTCTGACA+TGG - chr1_3:71245070-71245089 None:intergenic 50.0%
ATGGAGAGGATTGTTGGCCG+TGG - chr1_3:71241545-71241564 None:intergenic 55.0%
!!! ATTTTGGGACTCCGTTCGGG+CGG + chr1_3:71242063-71242082 Msa0138380:CDS 55.0%
! TCATCGAGGTGCCTTCCTTG+TGG + chr1_3:71242717-71242736 Msa0138380:CDS 55.0%
GGTTCTTGGCAAATGGACCG+GGG + chr1_3:71242988-71243007 Msa0138380:CDS 55.0%
GTTCTTGGCAAATGGACCGG+GGG + chr1_3:71242989-71243008 Msa0138380:CDS 55.0%
TTCTTGGCAAATGGACCGGG+GGG + chr1_3:71242990-71243009 Msa0138380:CDS 55.0%
GGTGGTAACAGCTTCGGTTG+AGG + chr1_3:71243072-71243091 Msa0138380:CDS 55.0%
GTTTCCCATCCCTCACACGA+TGG - chr1_3:71243374-71243393 None:intergenic 55.0%
AGAATAGTGACCGACGACCG+TGG - chr1_3:71243829-71243848 None:intergenic 55.0%
!!! TTTTGGGACTCCGTTCGGGC+GGG + chr1_3:71242064-71242083 Msa0138380:CDS 60.0%
ATGTGGGTGACCTCGCTTCC+TGG + chr1_3:71242513-71242532 Msa0138380:CDS 60.0%
GTGCCTTCCTTGTGGCACTG+TGG + chr1_3:71242725-71242744 Msa0138380:CDS 60.0%
GCTTCGGTTGAGGGGCCATA+TGG + chr1_3:71243082-71243101 Msa0138380:CDS 60.0%
CGTTCGCACTCCAGGAAGCG+AGG - chr1_3:71242526-71242545 None:intergenic 65.0%
CGCTTCCTGGAGTGCGAACG+TGG + chr1_3:71242526-71242545 Msa0138380:CDS 65.0%
GGACTCCGTTCGGGCGGGAT+TGG + chr1_3:71242069-71242088 Msa0138380:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 71239962 71245743 71239962 ID=Msa0138380;Name=Msa0138380
chr1_3 mRNA 71239962 71245743 71239962 ID=Msa0138380-mRNA-1;Parent=Msa0138380;Name=Msa0138380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=232|1|1|1|1|1|9|519|740
chr1_3 exon 71239962 71240437 71239962 ID=Msa0138380-mRNA-1:exon:24767;Parent=Msa0138380-mRNA-1
chr1_3 exon 71240678 71240771 71240678 ID=Msa0138380-mRNA-1:exon:24768;Parent=Msa0138380-mRNA-1
chr1_3 exon 71241058 71241252 71241058 ID=Msa0138380-mRNA-1:exon:24769;Parent=Msa0138380-mRNA-1
chr1_3 exon 71242047 71242281 71242047 ID=Msa0138380-mRNA-1:exon:24770;Parent=Msa0138380-mRNA-1
chr1_3 exon 71242444 71242771 71242444 ID=Msa0138380-mRNA-1:exon:24771;Parent=Msa0138380-mRNA-1
chr1_3 exon 71242861 71243128 71242861 ID=Msa0138380-mRNA-1:exon:24772;Parent=Msa0138380-mRNA-1
chr1_3 exon 71243299 71243554 71243299 ID=Msa0138380-mRNA-1:exon:24773;Parent=Msa0138380-mRNA-1
chr1_3 exon 71243875 71244307 71243875 ID=Msa0138380-mRNA-1:exon:24774;Parent=Msa0138380-mRNA-1
chr1_3 exon 71245055 71245743 71245055 ID=Msa0138380-mRNA-1:exon:24775;Parent=Msa0138380-mRNA-1
chr1_3 five_prime_UTR 71239962 71240193 71239962 ID=Msa0138380-mRNA-1:five_prime_utr;Parent=Msa0138380-mRNA-1
chr1_3 CDS 71240194 71240437 71240194 ID=Msa0138380-mRNA-1:cds;Parent=Msa0138380-mRNA-1
chr1_3 CDS 71240678 71240771 71240678 ID=Msa0138380-mRNA-1:cds;Parent=Msa0138380-mRNA-1
chr1_3 CDS 71241058 71241252 71241058 ID=Msa0138380-mRNA-1:cds;Parent=Msa0138380-mRNA-1
chr1_3 CDS 71242047 71242281 71242047 ID=Msa0138380-mRNA-1:cds;Parent=Msa0138380-mRNA-1
chr1_3 CDS 71242444 71242771 71242444 ID=Msa0138380-mRNA-1:cds;Parent=Msa0138380-mRNA-1
chr1_3 CDS 71242861 71243128 71242861 ID=Msa0138380-mRNA-1:cds;Parent=Msa0138380-mRNA-1
chr1_3 CDS 71243299 71243554 71243299 ID=Msa0138380-mRNA-1:cds;Parent=Msa0138380-mRNA-1
chr1_3 CDS 71243875 71244307 71243875 ID=Msa0138380-mRNA-1:cds;Parent=Msa0138380-mRNA-1
chr1_3 CDS 71245055 71245224 71245055 ID=Msa0138380-mRNA-1:cds;Parent=Msa0138380-mRNA-1
chr1_3 three_prime_UTR 71245225 71245743 71245225 ID=Msa0138380-mRNA-1:three_prime_utr;Parent=Msa0138380-mRNA-1
Gene Sequence

>Msa0138380

ATGGAGAAAAACTCTGTTGATTATAGTCCTTTGCTTTCTAAGCAAGGTGATAAAACTGACGGTTATGTTAAAAATAATTCACCTAATTTTGTTGTGTCAGCTACTAAATGGACTCTTAGGACTTTGATTTCCATAATCTTCATTATATGGGCTGCTTTCATTTTTCTGTTACCATCAGAATCTGTGCATGGATTGTTCACAAAATGGCTTAATTTCAGCAGTGGAACTTCCTTTGGAATCACAGGAAGCATTTTGCTGATTCTCAGTGCTCCTGTTCTTGCAATTGCATTTCTTGCCATTGCATACCTAATTATTTCTGGGGAGGATCAGCTTCCTGAGAAGAAGACTTCCAAGTATCCAAGATTTCGCCTATGGACTTTTCCGATCCTTATCAATGGACCATTTGGGGTTGTTTCTGCAACAGAGCTCATTGGAATTGTCATTTTTTTGGCATATGTTATTTGGGCTTTCTATGCTTATACTATGCAGGCTCTTGCAGCTATGTCTTATCAGTTATCATTTAGAGCCAAGAGCTTGCACATGTTGGAAATTTTGGGACTCCGTTCGGGCGGGATTGGATTAATGTGCTTGGCGTTTTTATTTATACCGATTTCAAGGGGATCTGTTCTTCTCCGCTTCATAGATATCCCTTTCGAACATGCTGCAAAATATCATGTATGGCTAGGACACCTCACAATGGTGATTTTTACTCTCCATGGACTCTTCTATGTTATTGAGTGGCTAATGGAAGGTCACCTAATTCAAGAATTATTAGAATGGAAAGATATTGGTGTTGCCAATCTAGCAGGAGTTATCAGCCTTGTAGCTGGTTTGTTGATGTGGGTGACCTCGCTTCCTGGAGTGCGAACGTGGAATTTTGAGCTGTTTTTCTACACTCACCAATTATACATAATCTTTATTGTGTTCATGGCTTTGCATATTGGCGACTTTATTTTTGCTATGGCTGCTGGACCAATATTTCTTTTTATGCTTGATCGATTTCTGAGGTTCTGCCAATCAAGAAGGACAGTAAATGTAATCTCATCGAGGTGCCTTCCTTGTGGCACTGTGGAAATGGTTCTGTCAAAACCACAAAATTTGAGATACAATGCCCTAAGCTTCATTTTCCTTCAAGTTCGGGAATTATCGTGGCTTCAGTGGCATCCATTCAGTGTTTCTTCTAGCCCTTTAGATGGAAAAAATCACATTGCTGTTCTCATTAAGGTTCTTGGCAAATGGACCGGGGGGTTAAGAGAAAGAATCACTGAAGGTGATGCAACAGAAAATTTATCTGTTCAGCCTCATACGGTGGTAACAGCTTCGGTTGAGGGGCCATATGGACACGAAGTACCATATCACTTGATGTACGAAAACCTTATATTAGTGGCAGGCGGTATTGGACTTTCGCCTTTCCTTGCTATATTGAGCGATATTCTCCATCGTGTGAGGGATGGGAAACCTTGTCGACCAAGAAATATTTTAATTGTTTGGGCAGTGAAAAAGTCAAATGAGCTTCCACTTCTTTCGACCGTTGACATGGAAACAATCTGTCCACGCTTTTCTGATAAAGTAAATATCAATGTACATATCTTCGTCACTCGGGAATCAGATCCTCCATTGGAAGAGGGATACAATTACAAACCAATAAAATCACTCTGTCCCTTTCCTATGCCTAGTGATTATGGAATGTCTGGTTTGGTTGGTACAGGAAACAATTTCTGGTCTGGACTATATGTCATTTCATCTACCTTAGGCTTTGTGATCTTACTTGCTTTGTTGAATATTTACTATATAAATCCAGTTGGATTGGTTATATGGTGGTACAAAGGGCTACTACTTGTAGTCTGCATGGTTGCAGGTGTAGTTATCTTCGGTGGTATAGTGGTTGGATTTTGGCATATGTGGGAAAAGCAAAGTTCTCTAAAGGATAAGTCCAATAACATCAAGGTTGATAAAATTGAGCAAAATGGCTCTGTGGATCACAAGGATCTAAGTCAATACAATATTGCAAAGTTAACTACCATACAGTATGGCTCTAGGCCAGACTTTAAAGAGATTTTTGAATCCATGTCAGAGAAATGGGGCCATGTTGATGTTGGTATTCTAGTTTGTGGTCCTCCAACTCTTCAGTCAAGTGTTGCACAAGAAATCAGGTCACATAGTTTAACAAGAGAACCTTATCACCCCATCTTCCATTTCCACAGTCATAGCTTTGATCTCTAG
Protein sequence

>Msa0138380

MEKNSVDYSPLLSKQGDKTDGYVKNNSPNFVVSATKWTLRTLISIIFIIWAAFIFLLPSESVHGLFTKWLNFSSGTSFGITGSILLILSAPVLAIAFLAIAYLIISGEDQLPEKKTSKYPRFRLWTFPILINGPFGVVSATELIGIVIFLAYVIWAFYAYTMQALAAMSYQLSFRAKSLHMLEILGLRSGGIGLMCLAFLFIPISRGSVLLRFIDIPFEHAAKYHVWLGHLTMVIFTLHGLFYVIEWLMEGHLIQELLEWKDIGVANLAGVISLVAGLLMWVTSLPGVRTWNFELFFYTHQLYIIFIVFMALHIGDFIFAMAAGPIFLFMLDRFLRFCQSRRTVNVISSRCLPCGTVEMVLSKPQNLRYNALSFIFLQVRELSWLQWHPFSVSSSPLDGKNHIAVLIKVLGKWTGGLRERITEGDATENLSVQPHTVVTASVEGPYGHEVPYHLMYENLILVAGGIGLSPFLAILSDILHRVRDGKPCRPRNILIVWAVKKSNELPLLSTVDMETICPRFSDKVNINVHIFVTRESDPPLEEGYNYKPIKSLCPFPMPSDYGMSGLVGTGNNFWSGLYVISSTLGFVILLALLNIYYINPVGLVIWWYKGLLLVVCMVAGVVIFGGIVVGFWHMWEKQSSLKDKSNNIKVDKIEQNGSVDHKDLSQYNIAKLTTIQYGSRPDFKEIFESMSEKWGHVDVGILVCGPPTLQSSVAQEIRSHSLTREPYHPIFHFHSHSFDL*