AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030530 MtrunA17_Chr1g0194901 93.605 516 17 3 17 516 170 685 0.0 986
Msa0030530 MtrunA17_Chr7g0269851 67.283 541 125 6 17 515 150 680 0.0 695
Msa0030530 MtrunA17_Chr7g0275571 46.653 478 207 7 17 456 200 667 1.91e-132 400
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030530 AT1G02660.1 63.793 522 158 10 17 515 185 698 0.0 624
Msa0030530 AT3G62590.1 58.964 502 156 8 20 515 168 625 0.0 545
Msa0030530 AT3G61680.2 51.670 449 189 6 17 452 192 625 2.34e-138 414
Msa0030530 AT3G61680.1 51.670 449 189 6 17 452 192 625 2.34e-138 414
Msa0030530 AT3G61680.3 51.670 449 189 6 17 452 192 625 2.34e-138 414

Find 166 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAAATTACCTTGATATT+TGG 0.154361 1_1:+56887980 None:intergenic
ATCCTATATCCACCATTATT+TGG 0.160237 1_1:+56887084 None:intergenic
GAGAGATGAATGAATATTTA+AGG 0.164324 1_1:+56888769 None:intergenic
AAGAACCCTCCTTAGCATTT+TGG 0.172603 1_1:+56888062 None:intergenic
GCAATTACCTCAAATTTAAT+TGG 0.213954 1_1:+56886597 None:intergenic
CCCTGCTAGGATGTTAATAT+TGG 0.229996 1_1:-56885365 Msa0030530:exon
TACGGATCTGGTTAAGTTCT+TGG 0.252856 1_1:+56885606 None:intergenic
GTCTCTCGACGACGCCGTTT+TGG 0.268578 1_1:-56888336 Msa0030530:five_prime_UTR
GATGTCACACTTGGGGAGTT+TGG 0.270494 1_1:-56888014 Msa0030530:CDS
CCTGCTAGGATGTTAATATT+GGG 0.281713 1_1:-56885364 Msa0030530:exon
CTACTTCCTGTGATAACATT+TGG 0.282356 1_1:-56886254 Msa0030530:CDS
TGCCTTGCGGCAGAAGATTA+TGG 0.283373 1_1:+56885828 None:intergenic
AAATGCTAAGGAGGGTTCTT+TGG 0.293141 1_1:-56888059 Msa0030530:CDS
CAGGAAGAGAGTCCTTAAAA+AGG 0.312198 1_1:-56885442 Msa0030530:CDS
TCCACCATTATTTGGCTCCT+TGG 0.317715 1_1:+56887092 None:intergenic
TTTAGGTGAGCATGAACTTC+TGG 0.322356 1_1:+56886389 None:intergenic
TTAAGTGACCGATCTGCTTA+TGG 0.329267 1_1:-56885698 Msa0030530:CDS
CATTTCATATCATTCATCTA+AGG 0.331288 1_1:+56885323 None:intergenic
CTTGGTGAAAATTTCTCATC+TGG 0.344080 1_1:+56885851 None:intergenic
CTTGATATTTGGTATAGAAT+AGG 0.352328 1_1:+56887991 None:intergenic
GATACCCATTGGAATCTCTA+TGG 0.358600 1_1:-56888391 Msa0030530:five_prime_UTR
CATGTCATGATCTCTTTGTA+TGG 0.368198 1_1:+56885664 None:intergenic
AGGATGGGCAGAGAGAGAAT+TGG 0.368257 1_1:-56888268 Msa0030530:five_prime_UTR
AGCTTCTTGTCCGTGTCATT+AGG 0.369839 1_1:+56885770 None:intergenic
GGATGGGCAGAGAGAGAATT+GGG 0.390719 1_1:-56888267 Msa0030530:five_prime_UTR
CTCGCATCGATTTACGGATC+TGG 0.403958 1_1:+56885594 None:intergenic
CGCAGAAGTGGCATCTTTGA+TGG 0.405975 1_1:-56886926 Msa0030530:CDS
CGTGCAACTTTCCGTTTCAC+TGG 0.411226 1_1:-56886353 Msa0030530:CDS
CGTTTCACTGGACATTCCCT+TGG 0.413018 1_1:-56886341 Msa0030530:CDS
CAACGCCAGTCACCGTTCTC+TGG 0.414357 1_1:-56885476 Msa0030530:CDS
GACCGATCTGCTTATGGATC+TGG 0.419315 1_1:-56885692 Msa0030530:CDS
AGAGATGAATGAATATTTAA+GGG 0.430756 1_1:+56888770 None:intergenic
CCCAATATTAACATCCTAGC+AGG 0.442858 1_1:+56885364 None:intergenic
TGAATGAATATTTAAGGGTA+TGG 0.446357 1_1:+56888775 None:intergenic
TTGATACCAGCATTGTTGTT+GGG 0.446372 1_1:-56885526 Msa0030530:CDS
TTCACGACCCACCGCACTTA+CGG 0.447728 1_1:+56888454 None:intergenic
ACATTCCCTTGGTGGAAGCT+TGG 0.448070 1_1:-56886330 Msa0030530:CDS
GACAGCAGTGGTTGCGGCAA+AGG 0.448188 1_1:-56886887 Msa0030530:CDS
ATTGTTCCTTCGATCTCCAT+TGG 0.450078 1_1:-56888518 Msa0030530:five_prime_UTR
TTCACTGGACATTCCCTTGG+TGG 0.452430 1_1:-56886338 Msa0030530:CDS
GAAACCAAGGAGCCAAATAA+TGG 0.453919 1_1:-56887096 Msa0030530:CDS
GGGAAACTCTTAAAACATTA+CGG 0.455788 1_1:-56887212 Msa0030530:CDS
GTTCGGAGTCATTAGCATCT+TGG 0.455806 1_1:-56886641 Msa0030530:CDS
GTTCAAGAACGTCAACTTTG+CGG 0.456069 1_1:+56885742 None:intergenic
CCTGCACGTGGCTTCGCGGC+AGG 0.457427 1_1:+56886183 None:intergenic
TTCTCTATTATCTTCCAAAA+CGG 0.458755 1_1:+56888322 None:intergenic
CACATGGTTAGCTGAATGTT+AGG 0.465272 1_1:-56885253 Msa0030530:three_prime_UTR
AAGAATATTCCTCTACAAGC+AGG 0.475927 1_1:+56885181 None:intergenic
GTTCCTTCGATCTCCATTGG+TGG 0.483103 1_1:-56888515 Msa0030530:five_prime_UTR
ACACAAATAAATGCATGTGT+TGG 0.484143 1_1:+56885399 None:intergenic
CGCATCTACCGTAAGTGCGG+TGG 0.485121 1_1:-56888462 Msa0030530:five_prime_UTR
TGTTGGGAGGTCCATGGTAT+CGG 0.485167 1_1:-56885510 Msa0030530:CDS
AAAATCTGAGAAAATTTCTC+AGG 0.486992 1_1:-56887144 Msa0030530:CDS
GTTATAGATGACGGTGAGGA+TGG 0.490623 1_1:-56888284 Msa0030530:five_prime_UTR
AAGGGTATGGAACCTAAAAC+AGG 0.491510 1_1:+56888788 None:intergenic
AGCCAAATAATGGTGGATAT+AGG 0.497389 1_1:-56887086 Msa0030530:CDS
CTTAATATCTCAAGTGGATG+AGG 0.501462 1_1:+56885716 None:intergenic
GTTGATACCAGCATTGTTGT+TGG 0.504284 1_1:-56885527 Msa0030530:CDS
ATTGCCTGCACGTGGCTTCG+CGG 0.504752 1_1:+56886179 None:intergenic
CCTGCCGCGAAGCCACGTGC+AGG 0.508181 1_1:-56886183 Msa0030530:CDS
GTATATATGAGGCTGCTAAA+GGG 0.510063 1_1:-56886430 Msa0030530:CDS
CACAAATAAATGCATGTGTT+GGG 0.510490 1_1:+56885400 None:intergenic
TTCAGTGACAGCAGTGGTTG+CGG 0.512338 1_1:-56886893 Msa0030530:CDS
CTCGTTCGTCACCTTGCGAA+TGG 0.517823 1_1:-56886825 Msa0030530:CDS
GGTATATATGAGGCTGCTAA+AGG 0.517913 1_1:-56886431 Msa0030530:CDS
CATTGTTGTTGGGAGGTCCA+TGG 0.518484 1_1:-56885516 Msa0030530:CDS
CAAGGGAATGTCCAGTGAAA+CGG 0.522758 1_1:+56886342 None:intergenic
CTATTCTATACCAAATATCA+AGG 0.525327 1_1:-56887990 Msa0030530:intron
AATGTTTGGAAAGGGGAACA+AGG 0.528089 1_1:-56888221 Msa0030530:five_prime_UTR
ATCCTCACCGTCATCTATAA+CGG 0.528135 1_1:+56888286 None:intergenic
AATCTTCTGCCGCAAGGCAG+TGG 0.532114 1_1:-56885824 Msa0030530:CDS
AAGCTACTATACACACCAAT+GGG 0.534284 1_1:-56885893 Msa0030530:CDS
CATATATACCTCTGTGCACA+AGG 0.536219 1_1:+56886444 None:intergenic
TTATGCCAGAGAACGGTGAC+TGG 0.536435 1_1:+56885471 None:intergenic
TCAAATGCAGCGGCTGGTGA+AGG 0.538184 1_1:-56886976 Msa0030530:intron
CTTCTGCGTTCATCATGTCA+AGG 0.540763 1_1:+56886941 None:intergenic
TTCTCTGGCATAATGAAGAC+AGG 0.544083 1_1:-56885461 Msa0030530:CDS
AGAACGTCAACTTTGCGGCT+CGG 0.546820 1_1:+56885747 None:intergenic
AGAATCAGCAATTCACCCAT+TGG 0.548209 1_1:+56885878 None:intergenic
CTGCTAGGATGTTAATATTG+GGG 0.549191 1_1:-56885363 Msa0030530:exon
AACTCATTTCCAAAATGCTA+AGG 0.549388 1_1:-56888071 Msa0030530:CDS
GGTTCCCCTTCCATCATGTG+TGG 0.551578 1_1:-56886233 Msa0030530:CDS
CGCCTCCACACATGATGGAA+GGG 0.552230 1_1:+56886228 None:intergenic
ATGTGAAGAATGTTTGGAAA+GGG 0.553617 1_1:-56888229 Msa0030530:five_prime_UTR
TGCGGCAGAAGATTATGGCT+TGG 0.555573 1_1:+56885833 None:intergenic
CGGTCACTTAATATCTCAAG+TGG 0.555750 1_1:+56885710 None:intergenic
TCATTTCCAAAATGCTAAGG+AGG 0.557287 1_1:-56888068 Msa0030530:CDS
AGCAGTGGTTGCGGCAAAGG+AGG 0.558429 1_1:-56886884 Msa0030530:CDS
GGCAAAGGAGGAAGTAAAGC+AGG 0.560431 1_1:-56886872 Msa0030530:CDS
GGACCTCCCAACAACAATGC+TGG 0.562296 1_1:+56885520 None:intergenic
CATGTGAAGAATGTTTGGAA+AGG 0.563671 1_1:-56888230 Msa0030530:five_prime_UTR
ATACCAGCATTGTTGTTGGG+AGG 0.566961 1_1:-56885523 Msa0030530:CDS
GTATGCTCAGATGTCACACT+TGG 0.567630 1_1:-56888023 Msa0030530:CDS
CAGAGAACGGTGACTGGCGT+TGG 0.568268 1_1:+56885477 None:intergenic
TGACATGATGAACGCAGAAG+TGG 0.568983 1_1:-56886938 Msa0030530:CDS
CTCAAGAACCCTGCTTGTAG+AGG 0.569073 1_1:-56885190 Msa0030530:three_prime_UTR
CGATCTGCTTATGGATCTGG+AGG 0.572142 1_1:-56885689 Msa0030530:CDS
TTTACTTGGTTATTGAGACA+TGG 0.572898 1_1:+56886056 None:intergenic
TTACTTGGTTATTGAGACAT+GGG 0.574179 1_1:+56886057 None:intergenic
CAAGGGAATCATGAAAGAGA+AGG 0.574584 1_1:-56888203 Msa0030530:five_prime_UTR
CTCACCGTCATCTATAACGG+TGG 0.576554 1_1:+56888289 None:intergenic
TTATAGATGACGGTGAGGAT+GGG 0.579980 1_1:-56888283 Msa0030530:five_prime_UTR
CGACGGAACAGAACGTTCAG+TGG 0.580188 1_1:-56888362 Msa0030530:five_prime_UTR
TCGCCTCCACACATGATGGA+AGG 0.582366 1_1:+56886227 None:intergenic
AAATTAAAACAACCTGCGTA+AGG 0.582758 1_1:-56888671 Msa0030530:five_prime_UTR
TCCATGGTATCGGTCAGTAT+CGG 0.583827 1_1:-56885500 Msa0030530:CDS
GGGGAACCAAATGTTATCAC+AGG 0.584190 1_1:+56886248 None:intergenic
CATTTCCAAAATGCTAAGGA+GGG 0.587584 1_1:-56888067 Msa0030530:CDS
GCCGATACTGACCGATACCA+TGG 0.588719 1_1:+56885499 None:intergenic
GAGAGAAAAGACGCAAGGTA+TGG 0.588772 1_1:-56885574 Msa0030530:CDS
GTGTATAAAACAAGGGCACA+TGG 0.588841 1_1:-56885269 Msa0030530:three_prime_UTR
GCATTATAATTGCCTGCACG+TGG 0.590797 1_1:+56886171 None:intergenic
GAAGCTACTATACACACCAA+TGG 0.592530 1_1:-56885894 Msa0030530:CDS
TAGTGCCAAGCTTCCACCAA+GGG 0.594028 1_1:+56886325 None:intergenic
TGTGCACAGAGGTATATATG+AGG 0.594337 1_1:-56886441 Msa0030530:CDS
GACACTCTACTTGAAAAGCT+TGG 0.594758 1_1:-56886206 Msa0030530:CDS
CTCCAGATCCATAAGCAGAT+CGG 0.594796 1_1:+56885690 None:intergenic
AGCCATAATCTTCTGCCGCA+AGG 0.595034 1_1:-56885830 Msa0030530:CDS
AACGTTCTGTTCCGTCGTTG+TGG 0.595293 1_1:+56888368 None:intergenic
ATGTTTGGAAAGGGGAACAA+GGG 0.596462 1_1:-56888220 Msa0030530:five_prime_UTR
TATGCTCAGATGTCACACTT+GGG 0.597591 1_1:-56888022 Msa0030530:CDS
ACAGGAAGTAGAGAGGTGAT+TGG 0.597627 1_1:+56886266 None:intergenic
AGTGTCGCCTCCACACATGA+TGG 0.598823 1_1:+56886223 None:intergenic
AGAAAAGACGCAAGGTATGG+TGG 0.599163 1_1:-56885571 Msa0030530:CDS
GCCTCCACACATGATGGAAG+GGG 0.599219 1_1:+56886229 None:intergenic
GTGGCCATAGAGATTCCAAT+GGG 0.600305 1_1:+56888387 None:intergenic
AGAGAAGCAAGAAGAAACCA+AGG 0.600597 1_1:-56887109 Msa0030530:CDS
TCCCCTTCCATCATGTGTGG+AGG 0.601542 1_1:-56886230 Msa0030530:CDS
GTCTTCATTATGCCAGAGAA+CGG 0.604223 1_1:+56885464 None:intergenic
CGCACTTACGGTAGATGCGG+TGG 0.605825 1_1:+56888466 None:intergenic
TGCTAGGATGTTAATATTGG+GGG 0.605936 1_1:-56885362 Msa0030530:exon
ACCAAGGAGCCAAATAATGG+TGG 0.606415 1_1:-56887093 Msa0030530:CDS
GCATCTACCGTAAGTGCGGT+GGG 0.614606 1_1:-56888461 Msa0030530:five_prime_UTR
GTGCAGATAAGATGCAGCAG+AGG 0.621656 1_1:+56887032 None:intergenic
GATCCACCAATGGAGATCGA+AGG 0.628096 1_1:+56888512 None:intergenic
ACTCGTCGCGGTAGTACAAG+AGG 0.630459 1_1:+56885548 None:intergenic
AATCTCTATGGCCACAACGA+CGG 0.633455 1_1:-56888379 Msa0030530:five_prime_UTR
TGTGGCCATAGAGATTCCAA+TGG 0.646166 1_1:+56888386 None:intergenic
AGGGAAAAGTGTATAAAACA+AGG 0.646888 1_1:-56885277 Msa0030530:three_prime_UTR
TCGCAGATGAACCATTCGCA+AGG 0.648265 1_1:+56886814 None:intergenic
CACCGCATCTACCGTAAGTG+CGG 0.649836 1_1:-56888465 Msa0030530:five_prime_UTR
TGTATCTAAAGATCCACCAA+TGG 0.652056 1_1:+56888502 None:intergenic
ATGCTCAGATGTCACACTTG+GGG 0.652908 1_1:-56888021 Msa0030530:CDS
AGAATATTCCTCTACAAGCA+GGG 0.654837 1_1:+56885182 None:intergenic
AAAACCACCGTTATAGATGA+CGG 0.656587 1_1:-56888293 Msa0030530:five_prime_UTR
TGGATATAGGATAAGTGCAA+CGG 0.659737 1_1:-56887073 Msa0030530:CDS
CACCGCACTTACGGTAGATG+CGG 0.662356 1_1:+56888463 None:intergenic
TTGGATGTCCTTGTGCACAG+AGG 0.663273 1_1:-56886452 Msa0030530:CDS
AGATATAGACCACTGCCTTG+CGG 0.663361 1_1:+56885815 None:intergenic
CCAATATTAACATCCTAGCA+GGG 0.667471 1_1:+56885365 None:intergenic
GTGTCATTAGGTTCTGACAA+AGG 0.671563 1_1:+56885782 None:intergenic
CATGCTCACCTAAAATCTCG+AGG 0.672833 1_1:-56886380 Msa0030530:CDS
TACTGATTCAGTGACAGCAG+TGG 0.675088 1_1:-56886899 Msa0030530:CDS
GATGCGAGAGAAAAGACGCA+AGG 0.678863 1_1:-56885579 Msa0030530:CDS
TGTTATCACAGGAAGTAGAG+AGG 0.682469 1_1:+56886259 None:intergenic
CACCGTTATAGATGACGGTG+AGG 0.686310 1_1:-56888288 Msa0030530:five_prime_UTR
TTTGTCAGAACCTAATGACA+CGG 0.688799 1_1:-56885780 Msa0030530:CDS
ATGTTGTTGTTACCTTACGC+AGG 0.691790 1_1:+56888659 None:intergenic
GGGAAAAGTGTATAAAACAA+GGG 0.692115 1_1:-56885276 Msa0030530:three_prime_UTR
TGTGAAGAATGTTTGGAAAG+GGG 0.703391 1_1:-56888228 Msa0030530:five_prime_UTR
GTAGTGCCAAGCTTCCACCA+AGG 0.715098 1_1:+56886324 None:intergenic
TCAAGTTTGTGATACTTGCG+CGG 0.721242 1_1:-56888141 Msa0030530:five_prime_UTR
ATCTGCGATGATAACCAGAG+TGG 0.733794 1_1:-56886799 Msa0030530:CDS
TAATTGCAAGAAAATGCTCG+CGG 0.749108 1_1:+56886134 None:intergenic
ATGCTGGTATCAACTCGTCG+CGG 0.755961 1_1:+56885536 None:intergenic
GCTGAGAATGATGAAAACAA+CGG 0.787436 1_1:-56888173 Msa0030530:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTGTTTTGATTTGA+TGG + chr1_1:56885256-56885275 None:intergenic 15.0%
!!! TTTTTTCTTTTCTTTGTTTT+CGG + chr1_1:56885370-56885389 None:intergenic 15.0%
!! TAAAATTAAAAGACAAACTT+TGG + chr1_1:56886240-56886259 None:intergenic 15.0%
!!! TACAAGATTTTTTATTATTC+AGG - chr1_1:56887164-56887183 Msa0030530:CDS 15.0%
!!! AAGAAAAAACATAAACTTTT+TGG + chr1_1:56887929-56887948 None:intergenic 15.0%
!!! TATGTTTTTTCTTTATTGAT+AGG - chr1_1:56887936-56887955 Msa0030530:intron 15.0%
!!! ATTCATATTTTTTATTACGA+GGG - chr1_1:56888640-56888659 Msa0030530:five_prime_UTR 15.0%
!! AGAGATGAATGAATATTTAA+GGG + chr1_1:56885173-56885192 None:intergenic 20.0%
!! AAACTATGTGTTTAAAAACT+GGG - chr1_1:56885399-56885418 Msa0030530:CDS 20.0%
!! AAACAAATTACCTTGATATT+TGG + chr1_1:56885963-56885982 None:intergenic 20.0%
!!! GCTTTATGGTTTTTAAATTT+TGG - chr1_1:56886018-56886037 Msa0030530:intron 20.0%
!!! TATTTTGTTTTTATGTGATC+TGG - chr1_1:56886131-56886150 Msa0030530:CDS 20.0%
!!! TTTGTCTTTTAATTTTAGCA+TGG - chr1_1:56886243-56886262 Msa0030530:CDS 20.0%
!!! AGATTTTTTATTATTCAGGT+AGG - chr1_1:56887168-56887187 Msa0030530:CDS 20.0%
!!! GATTTTTTATTATTCAGGTA+GGG - chr1_1:56887169-56887188 Msa0030530:CDS 20.0%
!!! ATTTTTTATTATTCAGGTAG+GGG - chr1_1:56887170-56887189 Msa0030530:CDS 20.0%
!!! GATTCATATTTTTTATTACG+AGG - chr1_1:56888639-56888658 Msa0030530:five_prime_UTR 20.0%
! TGAATGAATATTTAAGGGTA+TGG + chr1_1:56885168-56885187 None:intergenic 25.0%
! GAGAGATGAATGAATATTTA+AGG + chr1_1:56885174-56885193 None:intergenic 25.0%
!! AAGAAAAGAAAAAAGCACAA+TGG - chr1_1:56885376-56885395 Msa0030530:exon 25.0%
! GAAACTATGTGTTTAAAAAC+TGG - chr1_1:56885398-56885417 Msa0030530:CDS 25.0%
!! GAAAACAATGATTTTTGTGA+AGG + chr1_1:56885515-56885534 None:intergenic 25.0%
!! ATTTTCATTTAGATACCCAT+TGG - chr1_1:56885538-56885557 Msa0030530:CDS 25.0%
! TTCTCTATTATCTTCCAAAA+CGG + chr1_1:56885621-56885640 None:intergenic 25.0%
! CTTGATATTTGGTATAGAAT+AGG + chr1_1:56885952-56885971 None:intergenic 25.0%
! CTATTCTATACCAAATATCA+AGG - chr1_1:56885950-56885969 Msa0030530:intron 25.0%
!!! TTGTTTTTACTTGTGCTTTA+TGG - chr1_1:56886004-56886023 Msa0030530:intron 25.0%
!!! TTTTAGTTGATTCTTAGAGA+TGG - chr1_1:56886064-56886083 Msa0030530:CDS 25.0%
! GTTTGTAAATTGTTCATTCA+TGG - chr1_1:56886090-56886109 Msa0030530:CDS 25.0%
! ATCTTCAACTAATCAATGTT+TGG + chr1_1:56886167-56886186 None:intergenic 25.0%
! AGAAAGAAAGAAACAAATCA+AGG + chr1_1:56886191-56886210 None:intergenic 25.0%
!!! TGATTTGTTTCTTTCTTTCT+TGG - chr1_1:56886191-56886210 Msa0030530:CDS 25.0%
!!! TTATGGATTGGTGTATTATA+AGG - chr1_1:56886352-56886371 Msa0030530:CDS 25.0%
!! CTATAATCTGAATCTTTTGT+TGG - chr1_1:56886427-56886446 Msa0030530:CDS 25.0%
!!! AGTGTGATTTTTTACAACTA+TGG - chr1_1:56886531-56886550 Msa0030530:intron 25.0%
! TGGAAATCAGAACATATAAT+AGG + chr1_1:56886658-56886677 None:intergenic 25.0%
!! TTAGTTTCATATGCATTTTG+TGG + chr1_1:56886678-56886697 None:intergenic 25.0%
! TGAAATTTGATTATTTAGCC+AGG - chr1_1:56886707-56886726 Msa0030530:intron 25.0%
! GAAATTTGATTATTTAGCCA+GGG - chr1_1:56886708-56886727 Msa0030530:intron 25.0%
! AAAATCTGAGAAAATTTCTC+AGG - chr1_1:56886796-56886815 Msa0030530:CDS 25.0%
!! TTGATAAAGCGTTATTATGT+AGG - chr1_1:56887276-56887295 Msa0030530:intron 25.0%
!! TGATAAAGCGTTATTATGTA+GGG - chr1_1:56887277-56887296 Msa0030530:intron 25.0%
!! ATTTAATTGGCTCAAAAAGT+AGG + chr1_1:56887333-56887352 None:intergenic 25.0%
!! TTTTGAGCCAATTAAATTTG+AGG - chr1_1:56887336-56887355 Msa0030530:intron 25.0%
! GCAATTACCTCAAATTTAAT+TGG + chr1_1:56887346-56887365 None:intergenic 25.0%
!!! TACACATTTTTTTTTACCCA+GGG - chr1_1:56887464-56887483 Msa0030530:intron 25.0%
! CATTTCATATCATTCATCTA+AGG + chr1_1:56888620-56888639 None:intergenic 25.0%
!!! ATATTTTTTATTACGAGGGA+GGG - chr1_1:56888644-56888663 Msa0030530:five_prime_UTR 25.0%
! AAAATTCGTTCACCTGTTTT+AGG - chr1_1:56885140-56885159 Msa0030530:three_prime_UTR 30.0%
AAATTAAAACAACCTGCGTA+AGG - chr1_1:56885269-56885288 Msa0030530:three_prime_UTR 30.0%
! TTTTGCATGTGAAGAATGTT+TGG - chr1_1:56885705-56885724 Msa0030530:CDS 30.0%
ATGTGAAGAATGTTTGGAAA+GGG - chr1_1:56885711-56885730 Msa0030530:CDS 30.0%
AACTCATTTCCAAAATGCTA+AGG - chr1_1:56885869-56885888 Msa0030530:CDS 30.0%
! TTGTTCATTCATGGTTTTTG+AGG - chr1_1:56886099-56886118 Msa0030530:CDS 30.0%
! TGCATTTTGCCGTTATATAA+AGG - chr1_1:56886298-56886317 Msa0030530:intron 30.0%
AACCGCAAACCTTTATATAA+CGG + chr1_1:56886310-56886329 None:intergenic 30.0%
ATTTACCATGTGTTGGATTA+TGG - chr1_1:56886335-56886354 Msa0030530:CDS 30.0%
!!! AAGGTTTTAATTCATAACCC+TGG - chr1_1:56886371-56886390 Msa0030530:CDS 30.0%
!!! AGGTTTTAATTCATAACCCT+GGG - chr1_1:56886372-56886391 Msa0030530:CDS 30.0%
TATGTTAGGTGATTGATCTT+TGG - chr1_1:56886567-56886586 Msa0030530:intron 30.0%
!!! TAATGTTTTAAGAGTTTCCC+TGG + chr1_1:56886728-56886747 None:intergenic 30.0%
GGGAAACTCTTAAAACATTA+CGG - chr1_1:56886728-56886747 Msa0030530:intron 30.0%
ATCGCTAGAGAAAAAAGAAT+TGG - chr1_1:56886769-56886788 Msa0030530:intron 30.0%
ATCCTATATCCACCATTATT+TGG + chr1_1:56886859-56886878 None:intergenic 30.0%
TAAAAAATCTTGTACCACTC+TGG + chr1_1:56887158-56887177 None:intergenic 30.0%
!!! GTACACATTTTTTTTTACCC+AGG - chr1_1:56887463-56887482 Msa0030530:intron 30.0%
!!! ATTTTTTTTTACCCAGGGTT+TGG - chr1_1:56887469-56887488 Msa0030530:intron 30.0%
!!! CCTTTAAGATTTTTGCAACA+TGG + chr1_1:56887838-56887857 None:intergenic 30.0%
CCATGTTGCAAAAATCTTAA+AGG - chr1_1:56887835-56887854 Msa0030530:intron 30.0%
TTACTTGGTTATTGAGACAT+GGG + chr1_1:56887886-56887905 None:intergenic 30.0%
TTTACTTGGTTATTGAGACA+TGG + chr1_1:56887887-56887906 None:intergenic 30.0%
! CATAAACTTTTTGGATAAGC+AGG + chr1_1:56887920-56887939 None:intergenic 30.0%
CACAAATAAATGCATGTGTT+GGG + chr1_1:56888543-56888562 None:intergenic 30.0%
ACACAAATAAATGCATGTGT+TGG + chr1_1:56888544-56888563 None:intergenic 30.0%
!!! CATATTTTTTATTACGAGGG+AGG - chr1_1:56888643-56888662 Msa0030530:five_prime_UTR 30.0%
! AGGGAAAAGTGTATAAAACA+AGG - chr1_1:56888663-56888682 Msa0030530:five_prime_UTR 30.0%
! GGGAAAAGTGTATAAAACAA+GGG - chr1_1:56888664-56888683 Msa0030530:five_prime_UTR 30.0%
TGTATCTAAAGATCCACCAA+TGG + chr1_1:56885441-56885460 None:intergenic 35.0%
AAAACCACCGTTATAGATGA+CGG - chr1_1:56885647-56885666 Msa0030530:CDS 35.0%
CATGTGAAGAATGTTTGGAA+AGG - chr1_1:56885710-56885729 Msa0030530:CDS 35.0%
TGTGAAGAATGTTTGGAAAG+GGG - chr1_1:56885712-56885731 Msa0030530:CDS 35.0%
GCTGAGAATGATGAAAACAA+CGG - chr1_1:56885767-56885786 Msa0030530:CDS 35.0%
TCATTTCCAAAATGCTAAGG+AGG - chr1_1:56885872-56885891 Msa0030530:CDS 35.0%
CATTTCCAAAATGCTAAGGA+GGG - chr1_1:56885873-56885892 Msa0030530:CDS 35.0%
! TCTTTCTTTCTTGGCTTGAA+TGG - chr1_1:56886200-56886219 Msa0030530:CDS 35.0%
! CTTTCTTTCTTGGCTTGAAT+GGG - chr1_1:56886201-56886220 Msa0030530:CDS 35.0%
! TTTCTTTCTTGGCTTGAATG+GGG - chr1_1:56886202-56886221 Msa0030530:CDS 35.0%
TGCCGTTATATAAAGGTTTG+CGG - chr1_1:56886305-56886324 Msa0030530:intron 35.0%
TTTAATTCATAACCCTGGGT+AGG - chr1_1:56886376-56886395 Msa0030530:CDS 35.0%
TTAATTCATAACCCTGGGTA+GGG - chr1_1:56886377-56886396 Msa0030530:CDS 35.0%
! GTTTTATCCAAAGCTAAACG+AGG + chr1_1:56886491-56886510 None:intergenic 35.0%
GAATGCTCATTGCTTATGTT+AGG - chr1_1:56886553-56886572 Msa0030530:intron 35.0%
!! AGCCAAATAATGGTGGATAT+AGG - chr1_1:56886854-56886873 Msa0030530:CDS 35.0%
TGGATATAGGATAAGTGCAA+CGG - chr1_1:56886867-56886886 Msa0030530:CDS 35.0%
ATTCACTTCTTCAAATGCAG+CGG - chr1_1:56886954-56886973 Msa0030530:CDS 35.0%
AAGCGTTATTATGTAGGGTT+CGG - chr1_1:56887282-56887301 Msa0030530:intron 35.0%
TTGCTGATATTGCAGACTAT+AGG - chr1_1:56887362-56887381 Msa0030530:intron 35.0%
! TTTTTCGTCACTATTGTCGA+AGG - chr1_1:56887386-56887405 Msa0030530:intron 35.0%
! TTTTCGTCACTATTGTCGAA+GGG - chr1_1:56887387-56887406 Msa0030530:intron 35.0%
GTATATATGAGGCTGCTAAA+GGG - chr1_1:56887510-56887529 Msa0030530:intron 35.0%
CTACTTCCTGTGATAACATT+TGG - chr1_1:56887686-56887705 Msa0030530:intron 35.0%
TAATTGCAAGAAAATGCTCG+CGG + chr1_1:56887809-56887828 None:intergenic 35.0%
! AGATTTTTGCAACATGGTCA+GGG + chr1_1:56887832-56887851 None:intergenic 35.0%
! AAGATTTTTGCAACATGGTC+AGG + chr1_1:56887833-56887852 None:intergenic 35.0%
AAGCTACTATACACACCAAT+GGG - chr1_1:56888047-56888066 Msa0030530:CDS 35.0%
CTTGGTGAAAATTTCTCATC+TGG + chr1_1:56888092-56888111 None:intergenic 35.0%
TTTGTCAGAACCTAATGACA+CGG - chr1_1:56888160-56888179 Msa0030530:five_prime_UTR 35.0%
CTTAATATCTCAAGTGGATG+AGG + chr1_1:56888227-56888246 None:intergenic 35.0%
CATGTCATGATCTCTTTGTA+TGG + chr1_1:56888279-56888298 None:intergenic 35.0%
!!! TTTTCTCTCGCATCGATTTA+CGG + chr1_1:56888355-56888374 None:intergenic 35.0%
! TTGATACCAGCATTGTTGTT+GGG - chr1_1:56888414-56888433 Msa0030530:five_prime_UTR 35.0%
AGTCCTTAAAAAGGTTTAGC+AGG - chr1_1:56888507-56888526 Msa0030530:five_prime_UTR 35.0%
! AAGCCTGCTAAACCTTTTTA+AGG + chr1_1:56888513-56888532 None:intergenic 35.0%
CCAATATTAACATCCTAGCA+GGG + chr1_1:56888578-56888597 None:intergenic 35.0%
CCTGCTAGGATGTTAATATT+GGG - chr1_1:56888576-56888595 Msa0030530:five_prime_UTR 35.0%
CTGCTAGGATGTTAATATTG+GGG - chr1_1:56888577-56888596 Msa0030530:five_prime_UTR 35.0%
TGCTAGGATGTTAATATTGG+GGG - chr1_1:56888578-56888597 Msa0030530:five_prime_UTR 35.0%
AGAATATTCCTCTACAAGCA+GGG + chr1_1:56888761-56888780 None:intergenic 35.0%
AAGAATATTCCTCTACAAGC+AGG + chr1_1:56888762-56888781 None:intergenic 35.0%
! AAGGGTATGGAACCTAAAAC+AGG + chr1_1:56885155-56885174 None:intergenic 40.0%
! ATGTTGTTGTTACCTTACGC+AGG + chr1_1:56885284-56885303 None:intergenic 40.0%
ATTGTTCCTTCGATCTCCAT+TGG - chr1_1:56885422-56885441 Msa0030530:CDS 40.0%
GATACCCATTGGAATCTCTA+TGG - chr1_1:56885549-56885568 Msa0030530:CDS 40.0%
ATCCTCACCGTCATCTATAA+CGG + chr1_1:56885657-56885676 None:intergenic 40.0%
! TTATAGATGACGGTGAGGAT+GGG - chr1_1:56885657-56885676 Msa0030530:CDS 40.0%
AATGTTTGGAAAGGGGAACA+AGG - chr1_1:56885719-56885738 Msa0030530:CDS 40.0%
ATGTTTGGAAAGGGGAACAA+GGG - chr1_1:56885720-56885739 Msa0030530:CDS 40.0%
CAAGGGAATCATGAAAGAGA+AGG - chr1_1:56885737-56885756 Msa0030530:CDS 40.0%
TCAAGTTTGTGATACTTGCG+CGG - chr1_1:56885799-56885818 Msa0030530:CDS 40.0%
! AAGAACCCTCCTTAGCATTT+TGG + chr1_1:56885881-56885900 None:intergenic 40.0%
AAATGCTAAGGAGGGTTCTT+TGG - chr1_1:56885881-56885900 Msa0030530:CDS 40.0%
TATGCTCAGATGTCACACTT+GGG - chr1_1:56885918-56885937 Msa0030530:intron 40.0%
TTGCGCAATTTACCATGTGT+TGG - chr1_1:56886328-56886347 Msa0030530:CDS 40.0%
CCAATCCATAATCCAACACA+TGG + chr1_1:56886343-56886362 None:intergenic 40.0%
CCATGTGTTGGATTATGGAT+TGG - chr1_1:56886340-56886359 Msa0030530:CDS 40.0%
TCGCTTAAACTTGTCGACAA+TGG - chr1_1:56886402-56886421 Msa0030530:CDS 40.0%
CGCTTAAACTTGTCGACAAT+GGG - chr1_1:56886403-56886422 Msa0030530:CDS 40.0%
GCTTAAACTTGTCGACAATG+GGG - chr1_1:56886404-56886423 Msa0030530:CDS 40.0%
! TCTTAGTCCTCGTTTAGCTT+TGG - chr1_1:56886481-56886500 Msa0030530:intron 40.0%
TAGGTGATTGATCTTTGGCT+TGG - chr1_1:56886572-56886591 Msa0030530:intron 40.0%
! AGGTGATTGATCTTTGGCTT+GGG - chr1_1:56886573-56886592 Msa0030530:intron 40.0%
!! TTGATCTTTGGCTTGGGATT+CGG - chr1_1:56886579-56886598 Msa0030530:intron 40.0%
AGAGAAGCAAGAAGAAACCA+AGG - chr1_1:56886831-56886850 Msa0030530:CDS 40.0%
GAAACCAAGGAGCCAAATAA+TGG - chr1_1:56886844-56886863 Msa0030530:CDS 40.0%
GCTGCATTTGAAGAAGTGAA+TGG + chr1_1:56886955-56886974 None:intergenic 40.0%
TTTCGTCACTATTGTCGAAG+GGG - chr1_1:56887388-56887407 Msa0030530:intron 40.0%
CATATATACCTCTGTGCACA+AGG + chr1_1:56887499-56887518 None:intergenic 40.0%
! TGTGCACAGAGGTATATATG+AGG - chr1_1:56887499-56887518 Msa0030530:intron 40.0%
GGTATATATGAGGCTGCTAA+AGG - chr1_1:56887509-56887528 Msa0030530:intron 40.0%
TTTAGGTGAGCATGAACTTC+TGG + chr1_1:56887554-56887573 None:intergenic 40.0%
TGTTATCACAGGAAGTAGAG+AGG + chr1_1:56887684-56887703 None:intergenic 40.0%
GACACTCTACTTGAAAAGCT+TGG - chr1_1:56887734-56887753 Msa0030530:intron 40.0%
! TTTTTGGATAAGCAGGAGTG+CGG + chr1_1:56887913-56887932 None:intergenic 40.0%
GAAGCTACTATACACACCAA+TGG - chr1_1:56888046-56888065 Msa0030530:CDS 40.0%
AGAATCAGCAATTCACCCAT+TGG + chr1_1:56888065-56888084 None:intergenic 40.0%
! GTGTCATTAGGTTCTGACAA+AGG + chr1_1:56888161-56888180 None:intergenic 40.0%
GTTCAAGAACGTCAACTTTG+CGG + chr1_1:56888201-56888220 None:intergenic 40.0%
CGGTCACTTAATATCTCAAG+TGG + chr1_1:56888233-56888252 None:intergenic 40.0%
TTAAGTGACCGATCTGCTTA+TGG - chr1_1:56888242-56888261 Msa0030530:five_prime_UTR 40.0%
TACGGATCTGGTTAAGTTCT+TGG + chr1_1:56888337-56888356 None:intergenic 40.0%
GTTGATACCAGCATTGTTGT+TGG - chr1_1:56888413-56888432 Msa0030530:five_prime_UTR 40.0%
GTCTTCATTATGCCAGAGAA+CGG + chr1_1:56888479-56888498 None:intergenic 40.0%
TTCTCTGGCATAATGAAGAC+AGG - chr1_1:56888479-56888498 Msa0030530:five_prime_UTR 40.0%
CAGGAAGAGAGTCCTTAAAA+AGG - chr1_1:56888498-56888517 Msa0030530:five_prime_UTR 40.0%
!!! GTTGCTTTTTTTTCCCTGCT+AGG - chr1_1:56888562-56888581 Msa0030530:five_prime_UTR 40.0%
CCCTGCTAGGATGTTAATAT+TGG - chr1_1:56888575-56888594 Msa0030530:five_prime_UTR 40.0%
CCCAATATTAACATCCTAGC+AGG + chr1_1:56888579-56888598 None:intergenic 40.0%
! GTGTATAAAACAAGGGCACA+TGG - chr1_1:56888671-56888690 Msa0030530:five_prime_UTR 40.0%
! CACATGGTTAGCTGAATGTT+AGG - chr1_1:56888687-56888706 Msa0030530:five_prime_UTR 40.0%
GTGGCCATAGAGATTCCAAT+GGG + chr1_1:56885556-56885575 None:intergenic 45.0%
TGTGGCCATAGAGATTCCAA+TGG + chr1_1:56885557-56885576 None:intergenic 45.0%
AATCTCTATGGCCACAACGA+CGG - chr1_1:56885561-56885580 Msa0030530:CDS 45.0%
! GTTATAGATGACGGTGAGGA+TGG - chr1_1:56885656-56885675 Msa0030530:CDS 45.0%
GTATGCTCAGATGTCACACT+TGG - chr1_1:56885917-56885936 Msa0030530:intron 45.0%
ATGCTCAGATGTCACACTTG+GGG - chr1_1:56885919-56885938 Msa0030530:intron 45.0%
TTTAAGCGAAACCCTACCCA+GGG + chr1_1:56886391-56886410 None:intergenic 45.0%
ACCAAGGAGCCAAATAATGG+TGG - chr1_1:56886847-56886866 Msa0030530:CDS 45.0%
! TCCACCATTATTTGGCTCCT+TGG + chr1_1:56886851-56886870 None:intergenic 45.0%
CTTCTGCGTTCATCATGTCA+AGG + chr1_1:56887002-56887021 None:intergenic 45.0%
TGACATGATGAACGCAGAAG+TGG - chr1_1:56887002-56887021 Msa0030530:intron 45.0%
!! TACTGATTCAGTGACAGCAG+TGG - chr1_1:56887041-56887060 Msa0030530:CDS 45.0%
ATCTGCGATGATAACCAGAG+TGG - chr1_1:56887141-56887160 Msa0030530:CDS 45.0%
GTTCGGAGTCATTAGCATCT+TGG - chr1_1:56887299-56887318 Msa0030530:intron 45.0%
TTCGTCACTATTGTCGAAGG+GGG - chr1_1:56887389-56887408 Msa0030530:intron 45.0%
CATGCTCACCTAAAATCTCG+AGG - chr1_1:56887560-56887579 Msa0030530:intron 45.0%
! CACGAGAACCTCGAGATTTT+AGG + chr1_1:56887571-56887590 None:intergenic 45.0%
CAAGGGAATGTCCAGTGAAA+CGG + chr1_1:56887601-56887620 None:intergenic 45.0%
ACAGGAAGTAGAGAGGTGAT+TGG + chr1_1:56887677-56887696 None:intergenic 45.0%
GGGGAACCAAATGTTATCAC+AGG + chr1_1:56887695-56887714 None:intergenic 45.0%
GCATTATAATTGCCTGCACG+TGG + chr1_1:56887772-56887791 None:intergenic 45.0%
!! TTTTGGATAAGCAGGAGTGC+GGG + chr1_1:56887912-56887931 None:intergenic 45.0%
AGATATAGACCACTGCCTTG+CGG + chr1_1:56888128-56888147 None:intergenic 45.0%
! AGCTTCTTGTCCGTGTCATT+AGG + chr1_1:56888173-56888192 None:intergenic 45.0%
CTCCAGATCCATAAGCAGAT+CGG + chr1_1:56888253-56888272 None:intergenic 45.0%
GAGAGAAAAGACGCAAGGTA+TGG - chr1_1:56888366-56888385 Msa0030530:five_prime_UTR 45.0%
AGAAAAGACGCAAGGTATGG+TGG - chr1_1:56888369-56888388 Msa0030530:five_prime_UTR 45.0%
! ATACCAGCATTGTTGTTGGG+AGG - chr1_1:56888417-56888436 Msa0030530:five_prime_UTR 45.0%
!! TCCATGGTATCGGTCAGTAT+CGG - chr1_1:56888440-56888459 Msa0030530:five_prime_UTR 45.0%
!! GATATATAAATTATATTATT+TGG - chr1_1:56887213-56887232 Msa0030530:CDS 5.0%
GTTCCTTCGATCTCCATTGG+TGG - chr1_1:56885425-56885444 Msa0030530:CDS 50.0%
GATCCACCAATGGAGATCGA+AGG + chr1_1:56885431-56885450 None:intergenic 50.0%
AACGTTCTGTTCCGTCGTTG+TGG + chr1_1:56885575-56885594 None:intergenic 50.0%
CTCACCGTCATCTATAACGG+TGG + chr1_1:56885654-56885673 None:intergenic 50.0%
! CACCGTTATAGATGACGGTG+AGG - chr1_1:56885652-56885671 Msa0030530:CDS 50.0%
AGGATGGGCAGAGAGAGAAT+TGG - chr1_1:56885672-56885691 Msa0030530:CDS 50.0%
GGATGGGCAGAGAGAGAATT+GGG - chr1_1:56885673-56885692 Msa0030530:CDS 50.0%
GATGTCACACTTGGGGAGTT+TGG - chr1_1:56885926-56885945 Msa0030530:intron 50.0%
! CTTTCTTGGCTTGAATGGGG+TGG - chr1_1:56886205-56886224 Msa0030530:CDS 50.0%
GTTTAAGCGAAACCCTACCC+AGG + chr1_1:56886392-56886411 None:intergenic 50.0%
GTGCAGATAAGATGCAGCAG+AGG + chr1_1:56886911-56886930 None:intergenic 50.0%
ACTTCTTCAAATGCAGCGGC+TGG - chr1_1:56886958-56886977 Msa0030530:CDS 50.0%
CGCAGAAGTGGCATCTTTGA+TGG - chr1_1:56887014-56887033 Msa0030530:intron 50.0%
TTCAGTGACAGCAGTGGTTG+CGG - chr1_1:56887047-56887066 Msa0030530:CDS 50.0%
GGCAAAGGAGGAAGTAAAGC+AGG - chr1_1:56887068-56887087 Msa0030530:CDS 50.0%
TCGCAGATGAACCATTCGCA+AGG + chr1_1:56887129-56887148 None:intergenic 50.0%
TCGTCACTATTGTCGAAGGG+GGG - chr1_1:56887390-56887409 Msa0030530:intron 50.0%
CACAAGGACATCCAAACCCT+GGG + chr1_1:56887483-56887502 None:intergenic 50.0%
TTGGATGTCCTTGTGCACAG+AGG - chr1_1:56887488-56887507 Msa0030530:intron 50.0%
CGTGCAACTTTCCGTTTCAC+TGG - chr1_1:56887587-56887606 Msa0030530:intron 50.0%
CGTTTCACTGGACATTCCCT+TGG - chr1_1:56887599-56887618 Msa0030530:intron 50.0%
TTCACTGGACATTCCCTTGG+TGG - chr1_1:56887602-56887621 Msa0030530:intron 50.0%
ACATTCCCTTGGTGGAAGCT+TGG - chr1_1:56887610-56887629 Msa0030530:intron 50.0%
TAGTGCCAAGCTTCCACCAA+GGG + chr1_1:56887618-56887637 None:intergenic 50.0%
TGCGGCAGAAGATTATGGCT+TGG + chr1_1:56888110-56888129 None:intergenic 50.0%
AGCCATAATCTTCTGCCGCA+AGG - chr1_1:56888110-56888129 Msa0030530:exon 50.0%
TGCCTTGCGGCAGAAGATTA+TGG + chr1_1:56888115-56888134 None:intergenic 50.0%
AGAACGTCAACTTTGCGGCT+CGG + chr1_1:56888196-56888215 None:intergenic 50.0%
GACCGATCTGCTTATGGATC+TGG - chr1_1:56888248-56888267 Msa0030530:five_prime_UTR 50.0%
CGATCTGCTTATGGATCTGG+AGG - chr1_1:56888251-56888270 Msa0030530:five_prime_UTR 50.0%
!! CTCGCATCGATTTACGGATC+TGG + chr1_1:56888349-56888368 None:intergenic 50.0%
GATGCGAGAGAAAAGACGCA+AGG - chr1_1:56888361-56888380 Msa0030530:five_prime_UTR 50.0%
ATGCTGGTATCAACTCGTCG+CGG + chr1_1:56888407-56888426 None:intergenic 50.0%
! CATTGTTGTTGGGAGGTCCA+TGG - chr1_1:56888424-56888443 Msa0030530:five_prime_UTR 50.0%
TGTTGGGAGGTCCATGGTAT+CGG - chr1_1:56888430-56888449 Msa0030530:five_prime_UTR 50.0%
TTATGCCAGAGAACGGTGAC+TGG + chr1_1:56888472-56888491 None:intergenic 50.0%
CTCAAGAACCCTGCTTGTAG+AGG - chr1_1:56888750-56888769 Msa0030530:intron 50.0%
CACCGCATCTACCGTAAGTG+CGG - chr1_1:56885475-56885494 Msa0030530:CDS 55.0%
CACCGCACTTACGGTAGATG+CGG + chr1_1:56885480-56885499 None:intergenic 55.0%
GCATCTACCGTAAGTGCGGT+GGG - chr1_1:56885479-56885498 Msa0030530:CDS 55.0%
TTCACGACCCACCGCACTTA+CGG + chr1_1:56885489-56885508 None:intergenic 55.0%
CGACGGAACAGAACGTTCAG+TGG - chr1_1:56885578-56885597 Msa0030530:CDS 55.0%
TCAAATGCAGCGGCTGGTGA+AGG - chr1_1:56886964-56886983 Msa0030530:CDS 55.0%
CTCGTTCGTCACCTTGCGAA+TGG - chr1_1:56887115-56887134 Msa0030530:intron 55.0%
GCACAAGGACATCCAAACCC+TGG + chr1_1:56887484-56887503 None:intergenic 55.0%
GTAGTGCCAAGCTTCCACCA+AGG + chr1_1:56887619-56887638 None:intergenic 55.0%
GGTTCCCCTTCCATCATGTG+TGG - chr1_1:56887707-56887726 Msa0030530:intron 55.0%
TCCCCTTCCATCATGTGTGG+AGG - chr1_1:56887710-56887729 Msa0030530:intron 55.0%
! GCCTCCACACATGATGGAAG+GGG + chr1_1:56887714-56887733 None:intergenic 55.0%
! CGCCTCCACACATGATGGAA+GGG + chr1_1:56887715-56887734 None:intergenic 55.0%
! TCGCCTCCACACATGATGGA+AGG + chr1_1:56887716-56887735 None:intergenic 55.0%
AGTGTCGCCTCCACACATGA+TGG + chr1_1:56887720-56887739 None:intergenic 55.0%
! CAGGAGTGCGGGACTTTACT+TGG + chr1_1:56887901-56887920 None:intergenic 55.0%
AATCTTCTGCCGCAAGGCAG+TGG - chr1_1:56888116-56888135 Msa0030530:five_prime_UTR 55.0%
ACTCGTCGCGGTAGTACAAG+AGG + chr1_1:56888395-56888414 None:intergenic 55.0%
GGACCTCCCAACAACAATGC+TGG + chr1_1:56888423-56888442 None:intergenic 55.0%
GCCGATACTGACCGATACCA+TGG + chr1_1:56888444-56888463 None:intergenic 55.0%
CGCACTTACGGTAGATGCGG+TGG + chr1_1:56885477-56885496 None:intergenic 60.0%
CGCATCTACCGTAAGTGCGG+TGG - chr1_1:56885478-56885497 Msa0030530:CDS 60.0%
! GTCTCTCGACGACGCCGTTT+TGG - chr1_1:56885604-56885623 Msa0030530:CDS 60.0%
GACAGCAGTGGTTGCGGCAA+AGG - chr1_1:56887053-56887072 Msa0030530:CDS 60.0%
AGCAGTGGTTGCGGCAAAGG+AGG - chr1_1:56887056-56887075 Msa0030530:CDS 60.0%
ATTGCCTGCACGTGGCTTCG+CGG + chr1_1:56887764-56887783 None:intergenic 60.0%
CAGAGAACGGTGACTGGCGT+TGG + chr1_1:56888466-56888485 None:intergenic 60.0%
CAACGCCAGTCACCGTTCTC+TGG - chr1_1:56888464-56888483 Msa0030530:five_prime_UTR 60.0%
CCTGCACGTGGCTTCGCGGC+AGG + chr1_1:56887760-56887779 None:intergenic 75.0%
CCTGCCGCGAAGCCACGTGC+AGG - chr1_1:56887757-56887776 Msa0030530:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56885140 56888822 56885140 ID=Msa0030530;Name=Msa0030530
chr1_1 mRNA 56885140 56888822 56885140 ID=Msa0030530-mRNA-1;Parent=Msa0030530;Name=Msa0030530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=689|0.62|0.44|1|0.5|0.44|9|239|516
chr1_1 exon 56885140 56885915 56885140 ID=Msa0030530-mRNA-1:exon:17056;Parent=Msa0030530-mRNA-1
chr1_1 exon 56886061 56886298 56886061 ID=Msa0030530-mRNA-1:exon:17055;Parent=Msa0030530-mRNA-1
chr1_1 exon 56886311 56886477 56886311 ID=Msa0030530-mRNA-1:exon:17054;Parent=Msa0030530-mRNA-1
chr1_1 exon 56886605 56886664 56886605 ID=Msa0030530-mRNA-1:exon:17053;Parent=Msa0030530-mRNA-1
chr1_1 exon 56886777 56886988 56886777 ID=Msa0030530-mRNA-1:exon:17052;Parent=Msa0030530-mRNA-1
chr1_1 exon 56887019 56887129 56887019 ID=Msa0030530-mRNA-1:exon:17051;Parent=Msa0030530-mRNA-1
chr1_1 exon 56887135 56887237 56887135 ID=Msa0030530-mRNA-1:exon:17050;Parent=Msa0030530-mRNA-1
chr1_1 exon 56887991 56888758 56887991 ID=Msa0030530-mRNA-1:exon:17049;Parent=Msa0030530-mRNA-1
chr1_1 exon 56888779 56888822 56888779 ID=Msa0030530-mRNA-1:exon:17048;Parent=Msa0030530-mRNA-1
chr1_1 five_prime_UTR 56888779 56888822 56888779 ID=Msa0030530-mRNA-1:five_prime_utr;Parent=Msa0030530-mRNA-1
chr1_1 five_prime_UTR 56888114 56888758 56888114 ID=Msa0030530-mRNA-1:five_prime_utr;Parent=Msa0030530-mRNA-1
chr1_1 CDS 56887991 56888113 56887991 ID=Msa0030530-mRNA-1:cds;Parent=Msa0030530-mRNA-1
chr1_1 CDS 56887135 56887237 56887135 ID=Msa0030530-mRNA-1:cds;Parent=Msa0030530-mRNA-1
chr1_1 CDS 56887019 56887129 56887019 ID=Msa0030530-mRNA-1:cds;Parent=Msa0030530-mRNA-1
chr1_1 CDS 56886777 56886988 56886777 ID=Msa0030530-mRNA-1:cds;Parent=Msa0030530-mRNA-1
chr1_1 CDS 56886605 56886664 56886605 ID=Msa0030530-mRNA-1:cds;Parent=Msa0030530-mRNA-1
chr1_1 CDS 56886311 56886477 56886311 ID=Msa0030530-mRNA-1:cds;Parent=Msa0030530-mRNA-1
chr1_1 CDS 56886061 56886298 56886061 ID=Msa0030530-mRNA-1:cds;Parent=Msa0030530-mRNA-1
chr1_1 CDS 56885379 56885915 56885379 ID=Msa0030530-mRNA-1:cds;Parent=Msa0030530-mRNA-1
chr1_1 three_prime_UTR 56885140 56885378 56885140 ID=Msa0030530-mRNA-1:three_prime_utr;Parent=Msa0030530-mRNA-1
Gene Sequence

>Msa0030530

ATGATTTTGAATTTGATAGAAACTCATTTCCAAAATGCTAAGGAGGGTTCTTTGGCTGAAGCTAGATTGTATGCTCAGATGTCACACTTGGGGAGTTTGGCCTATTCTATACCAAATATCAAGCCAGGGAAACTCTTAAAACATTACGGTCTGCGTTTTGTAACTTCATCGCTAGAGAAAAAAGAATTGGCAGCAAAATCTGAGAAAATTTCTCAGGAAGTCGAAAAGAAGCAAGAAGAAACCAAGGAGCCAAATAATGGTGGATATAGGATAAGTGCAACGGCTGCTTATAATATTGCTGCCTCTGCTGCATCTTATCTGCACGCTCAGACAAAGACGGCTGGTGAAGGAAGCAATGAAAACCTTGACATGATGAACGCAGAAGTGGCATCTTTGATGGCGACTACTGATTCAGTGACAGCAGTGGTTGCGGCAAAGGAGGAAGTAAAGCAGGCTGTTGCAGATGATCTAAACTCAACTCGTTCGTCACCTTGCGAATGGTTCATCTGCGATGATAACCAGAGTGGTACAAGATTTTTTATTATTCAGGGTTCGGAGTCATTAGCATCTTGGCAAGCAAACCTACTTTTTGAGCCAATTAAATTTGAGGGTTTGGATGTCCTTGTGCACAGAGGTATATATGAGGCTGCTAAAGGGATATATCTACAGATGTTGCCAGAAGTTCATGCTCACCTAAAATCTCGAGGTTCTCGTGCAACTTTCCGTTTCACTGGACATTCCCTTGGTGGAAGCTTGGCACTACTTGTAAATCTCATACAAGAAGTACCAATCACCTCTCTACTTCCTGTGATAACATTTGGTTCCCCTTCCATCATGTGTGGAGGCGACACTCTACTTGAAAAGCTTGGCCTGCCGCGAAGCCACGTGCAGGCAATTATAATGCACAGAGACATAGTACCGCGAGCATTTTCTTGCAATTACCCTGACCATGTTGCAAAAATCTTAAAGGCTATCAATGTGAACTTTCGCAATCACCCATGTCTCAATAACCAAAAGCTACTATACACACCAATGGGTGAATTGCTGATTCTTCAACCAGATGAGAAATTTTCACCAAGCCATAATCTTCTGCCGCAAGGCAGTGGTCTATATCTTTTGCATTGTCCTTTGTCAGAACCTAATGACACGGACAAGAAGCTCCGAGCCGCAAAGTTGACGTTCTTGAACACACCTCATCCACTTGAGATATTAAGTGACCGATCTGCTTATGGATCTGGAGGAACCATACAAAGAGATCATGACATGAACTCTTACTTAAAGACAGTGAGAAGCGTGATTCGCCAAGAACTTAACCAGATCCGTAAATCGATGCGAGAGAAAAGACGCAAGGTATGGTGGCCTCTTGTACTACCGCGACGAGTTGATACCAGCATTGTTGTTGGGAGGTCCATGGTATCGGTCAGTATCGGCCAACGCCAGTCACCGTTCTCTGGCATAATGAAGACAGGAAGAGAGTCCTTAAAAAGGTTTAGCAGGCTTGTTGCATCCCAACACATGCATTTATTTGTGTTGCTTTTTTTTCCCTGCTAG
Protein sequence

>Msa0030530

MILNLIETHFQNAKEGSLAEARLYAQMSHLGSLAYSIPNIKPGKLLKHYGLRFVTSSLEKKELAAKSEKISQEVEKKQEETKEPNNGGYRISATAAYNIAASAASYLHAQTKTAGEGSNENLDMMNAEVASLMATTDSVTAVVAAKEEVKQAVADDLNSTRSSPCEWFICDDNQSGTRFFIIQGSESLASWQANLLFEPIKFEGLDVLVHRGIYEAAKGIYLQMLPEVHAHLKSRGSRATFRFTGHSLGGSLALLVNLIQEVPITSLLPVITFGSPSIMCGGDTLLEKLGLPRSHVQAIIMHRDIVPRAFSCNYPDHVAKILKAINVNFRNHPCLNNQKLLYTPMGELLILQPDEKFSPSHNLLPQGSGLYLLHCPLSEPNDTDKKLRAAKLTFLNTPHPLEILSDRSAYGSGGTIQRDHDMNSYLKTVRSVIRQELNQIRKSMREKRRKVWWPLVLPRRVDTSIVVGRSMVSVSIGQRQSPFSGIMKTGRESLKRFSRLVASQHMHLFVLLFFPC*