Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152780 | XP_013449186.1 | 89.881 | 336 | 13 | 1 | 3 | 317 | 43 | 378 | 0.0 | 600 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152780 | sp|Q38833|CHLG_ARATH | 82.043 | 323 | 36 | 2 | 16 | 317 | 66 | 387 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152780 | A0A072U0L0 | 92.000 | 325 | 5 | 1 | 14 | 317 | 53 | 377 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0117520 | Msa1152780 | -0.802430 | 5.632002e-49 | -8.615850e-47 |
| Msa0613420 | Msa1152780 | -0.805352 | 1.391620e-49 | -8.615850e-47 |
| Msa0673120 | Msa1152780 | -0.829228 | 5.789702e-55 | -8.615850e-47 |
| Msa0781330 | Msa1152780 | 0.816008 | 6.898410e-52 | -8.615850e-47 |
| Msa0168310 | Msa1152780 | -0.803207 | 3.891317e-49 | -8.615850e-47 |
| Msa0213620 | Msa1152780 | 0.880297 | 6.164084e-70 | -8.615850e-47 |
| Msa0220400 | Msa1152780 | 0.816930 | 4.288877e-52 | -8.615850e-47 |
| Msa0374340 | Msa1152780 | 0.824088 | 9.755269e-54 | -8.615850e-47 |
| Msa0374420 | Msa1152780 | 0.821690 | 3.531223e-53 | -8.615850e-47 |
| Msa0388080 | Msa1152780 | 0.817417 | 3.334509e-52 | -8.615850e-47 |
| Msa0403470 | Msa1152780 | 0.800865 | 1.179473e-48 | -8.615850e-47 |
| Msa0403480 | Msa1152780 | 0.809667 | 1.689500e-50 | -8.615850e-47 |
| Msa0277960 | Msa1152780 | -0.812231 | 4.703714e-51 | -8.615850e-47 |
| Msa1129300 | Msa1152780 | 0.803322 | 3.684414e-49 | -8.615850e-47 |
| Msa1152780 | Msa1190100 | 0.837250 | 5.805559e-57 | -8.615850e-47 |
| Msa1152780 | Msa1208450 | 0.811090 | 8.329116e-51 | -8.615850e-47 |
| Msa1152780 | Msa1209870 | 0.804535 | 2.062071e-49 | -8.615850e-47 |
| Msa1152780 | Msa1258030 | 0.809822 | 1.564767e-50 | -8.615850e-47 |
| Msa1152780 | Msa1298390 | 0.820151 | 7.981677e-53 | -8.615850e-47 |
| Msa1152780 | Msa1325410 | 0.803916 | 2.773595e-49 | -8.615850e-47 |
| Msa1152780 | Msa1340200 | -0.805424 | 1.344190e-49 | -8.615850e-47 |
| Msa1152780 | Msa1363820 | 0.826627 | 2.445487e-54 | -8.615850e-47 |
| Msa1152780 | Msa1369920 | 0.800775 | 1.230109e-48 | -8.615850e-47 |
| Msa1152780 | Msa1384760 | 0.816110 | 6.545851e-52 | -8.615850e-47 |
| Msa0515440 | Msa1152780 | 0.816639 | 4.984313e-52 | -8.615850e-47 |
| Msa0548650 | Msa1152780 | 0.804585 | 2.012776e-49 | -8.615850e-47 |
| Msa0589260 | Msa1152780 | 0.806938 | 6.450908e-50 | -8.615850e-47 |
| Msa0594050 | Msa1152780 | -0.808817 | 2.570434e-50 | -8.615850e-47 |
| Msa0943970 | Msa1152780 | -0.836883 | 7.207279e-57 | -8.615850e-47 |
| Msa0968470 | Msa1152780 | 0.821587 | 3.730763e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152780 | MtrunA17_Chr7g0242831 | 92.000 | 325 | 5 | 1 | 14 | 317 | 53 | 377 | 0.0 | 597 |
| Msa1152780 | MtrunA17_Chr7g0242901 | 86.842 | 38 | 2 | 1 | 8 | 45 | 4 | 38 | 3.19e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152780 | AT3G51820.1 | 82.043 | 323 | 36 | 2 | 16 | 317 | 66 | 387 | 0.0 | 516 |
Find 95 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAAAGAACTACCTTTAA+AGG | 0.156078 | 7_4:-38693803 | None:intergenic |
| AATCAGCTTCTTGGTATTAA+AGG | 0.169896 | 7_4:+38690729 | Msa1152780:CDS |
| ATATTCTGCACCTCCTTTAA+AGG | 0.191744 | 7_4:+38693790 | Msa1152780:CDS |
| CGGCCGGTATATTGGATATA+TGG | 0.204836 | 7_4:+38693618 | Msa1152780:CDS |
| TGGGCTGGTCAGGCTTTGTT+TGG | 0.238526 | 7_4:+38694067 | Msa1152780:CDS |
| TGCAGGTAATCACTCAAATA+TGG | 0.242588 | 7_4:+38693570 | Msa1152780:intron |
| CTCGGTCATACCAATCATTC+AGG | 0.250216 | 7_4:-38693408 | None:intergenic |
| AACTTGGCCTCCATTAGTTT+GGG | 0.255389 | 7_4:+38692967 | Msa1152780:CDS |
| TAGTCTCTTCCTGTTGCTTT+TGG | 0.262705 | 7_4:+38694702 | Msa1152780:intron |
| TAACTTGGCCTCCATTAGTT+TGG | 0.269337 | 7_4:+38692966 | Msa1152780:CDS |
| TTCGTGAAATTCTTTCTAAC+TGG | 0.281945 | 7_4:-38695659 | None:intergenic |
| AAAGACTTGTGGAGCTATTA+AGG | 0.297487 | 7_4:-38695249 | None:intergenic |
| TTCAATTAGGTGGGCTGGTC+AGG | 0.304263 | 7_4:+38694057 | Msa1152780:intron |
| GAAGTTCACTCACTGATTCT+TGG | 0.307576 | 7_4:-38690758 | None:intergenic |
| GGGCTGGTCAGGCTTTGTTT+GGG | 0.314315 | 7_4:+38694068 | Msa1152780:CDS |
| TCAAGCTTCAATCAGCTTCT+TGG | 0.322102 | 7_4:+38690720 | Msa1152780:CDS |
| ACTAATGGAGGCCAAGTTAC+AGG | 0.324619 | 7_4:-38692962 | None:intergenic |
| GTTTGTGGTGCAGCTGCTTC+AGG | 0.329427 | 7_4:+38692995 | Msa1152780:CDS |
| CATTTATTGCGTCAATTTCT+CGG | 0.342756 | 7_4:-38693426 | None:intergenic |
| CCAGAAGGAATTGGTCTATA+AGG | 0.345917 | 7_4:-38693451 | None:intergenic |
| CCTTATAGACCAATTCCTTC+TGG | 0.350797 | 7_4:+38693451 | Msa1152780:CDS |
| GAAATATGATGTTAAATATC+AGG | 0.359336 | 7_4:+38695434 | Msa1152780:CDS |
| ATAATCTTGAGTCCCTTTCA+TGG | 0.368040 | 7_4:+38695937 | Msa1152780:three_prime_UTR |
| AATGAATTGTGCAGAATATA+TGG | 0.374689 | 7_4:+38692915 | Msa1152780:intron |
| TTGGTTCTGAAACTGCAAAA+TGG | 0.382549 | 7_4:+38694721 | Msa1152780:CDS |
| GAGAGAATAATATCAAATAA+AGG | 0.394121 | 7_4:-38696019 | None:intergenic |
| CAAACTACACCCCAAACTAA+TGG | 0.399617 | 7_4:-38692977 | None:intergenic |
| AAGTTCACTCACTGATTCTT+GGG | 0.400530 | 7_4:-38690757 | None:intergenic |
| CAAATATGGGTGCTGCTACT+AGG | 0.411761 | 7_4:+38693584 | Msa1152780:CDS |
| TAAATCTGAGGCACCGGATA+AGG | 0.413689 | 7_4:+38690680 | Msa1152780:CDS |
| GATATTGCACCAGAAGGAAT+TGG | 0.414723 | 7_4:-38693460 | None:intergenic |
| ATGGCACACATCTTTAACTT+AGG | 0.420418 | 7_4:-38695714 | None:intergenic |
| AATTAGATAACCCGGTATGC+AGG | 0.420565 | 7_4:-38695753 | None:intergenic |
| TTAAAACAAAATGGATGGAT+TGG | 0.422434 | 7_4:+38693897 | Msa1152780:CDS |
| CAATCTTCTCTTACCCACTT+AGG | 0.426338 | 7_4:+38695787 | Msa1152780:three_prime_UTR |
| GGCCGGTATATTGGATATAT+GGG | 0.426953 | 7_4:+38693619 | Msa1152780:CDS |
| AGGTAGAATAATCTTTCCTT+TGG | 0.427078 | 7_4:-38695999 | None:intergenic |
| ACATAAACAATTCCTTATCA+TGG | 0.429512 | 7_4:+38695904 | Msa1152780:three_prime_UTR |
| ATACTTATTAAACCATGATA+AGG | 0.444738 | 7_4:-38695916 | None:intergenic |
| TTGTTCGTCACCCTGCATAC+CGG | 0.447688 | 7_4:+38695742 | Msa1152780:three_prime_UTR |
| ATACTCCGGCTATGCTGTAT+AGG | 0.453639 | 7_4:-38694123 | None:intergenic |
| GTGTATATCCTGTCAGGAAT+GGG | 0.463167 | 7_4:-38693281 | None:intergenic |
| TTTGATAAGGAAATTTCCAT+TGG | 0.464597 | 7_4:+38693211 | Msa1152780:intron |
| TATTTAACATCATATTTCAC+AGG | 0.468965 | 7_4:-38695429 | None:intergenic |
| GTTTCAGAACCAAAAGCAAC+AGG | 0.478326 | 7_4:-38694711 | None:intergenic |
| AACTTACAAAGCCTGTAACT+TGG | 0.479729 | 7_4:+38692951 | Msa1152780:CDS |
| TTACCTGTGTATATCCTGTC+AGG | 0.481823 | 7_4:-38693287 | None:intergenic |
| TGGATTGGAAACTTTGCCCT+TGG | 0.488058 | 7_4:+38693912 | Msa1152780:CDS |
| TGTGTATATCCTGTCAGGAA+TGG | 0.493799 | 7_4:-38693282 | None:intergenic |
| ATGGTTACAGGATATCTACT+TGG | 0.495779 | 7_4:+38695191 | Msa1152780:intron |
| TCTAGTTAAAACAAAATGGA+TGG | 0.499910 | 7_4:+38693892 | Msa1152780:intron |
| TGCAGTTAAATCTGAGGCAC+CGG | 0.501676 | 7_4:+38690674 | Msa1152780:CDS |
| GCAGGTAATCACTCAAATAT+GGG | 0.505851 | 7_4:+38693571 | Msa1152780:intron |
| TGTTCGTCACCCTGCATACC+GGG | 0.506168 | 7_4:+38695743 | Msa1152780:three_prime_UTR |
| AGTAAAGCTAATGCGTAATA+CGG | 0.507815 | 7_4:-38695224 | None:intergenic |
| ACTTGGCCTCCATTAGTTTG+GGG | 0.512173 | 7_4:+38692968 | Msa1152780:CDS |
| TGTGTCTATAAACCATGAAA+GGG | 0.516794 | 7_4:-38695949 | None:intergenic |
| GAAAGAATTTCACGAATTAG+CGG | 0.519672 | 7_4:+38695666 | Msa1152780:three_prime_UTR |
| CAGAATATATATACGACAGA+AGG | 0.520217 | 7_4:-38693775 | None:intergenic |
| CTTTGGCATACAAAGACCTC+AGG | 0.520715 | 7_4:-38695982 | None:intergenic |
| CAAGTTACATTAGTTTGCCA+TGG | 0.527841 | 7_4:+38693937 | Msa1152780:CDS |
| TCGGTCATACCAATCATTCA+GGG | 0.530916 | 7_4:-38693407 | None:intergenic |
| TGGTTACAGGATATCTACTT+GGG | 0.533392 | 7_4:+38695192 | Msa1152780:intron |
| GTGTGTCTATAAACCATGAA+AGG | 0.534410 | 7_4:-38695950 | None:intergenic |
| ATGTCTGGCCCATTCCTGAC+AGG | 0.537234 | 7_4:+38693273 | Msa1152780:CDS |
| CACCCATATATCCAATATAC+CGG | 0.541526 | 7_4:-38693621 | None:intergenic |
| ACAGGATATCTACTTGGGGC+TGG | 0.545863 | 7_4:+38695197 | Msa1152780:intron |
| TATATCCAATATACCGGCCG+TGG | 0.550708 | 7_4:-38693615 | None:intergenic |
| CAACATCCTCAACGTTCCAA+TGG | 0.553343 | 7_4:-38693227 | None:intergenic |
| TTAGTTTGGGGTGTAGTTTG+TGG | 0.554596 | 7_4:+38692980 | Msa1152780:CDS |
| TTCTCAGATATTGCACCAGA+AGG | 0.565849 | 7_4:-38693466 | None:intergenic |
| AAAAGAACTACCTTTAAAGG+AGG | 0.568625 | 7_4:-38693800 | None:intergenic |
| ATTAGATAACCCGGTATGCA+GGG | 0.569586 | 7_4:-38695752 | None:intergenic |
| AACTAATGTAACTTGCTCCA+AGG | 0.574854 | 7_4:-38693929 | None:intergenic |
| ATTACACAATTATCTGTCGC+TGG | 0.577211 | 7_4:+38694765 | Msa1152780:CDS |
| TGTTTCTGCAGTTAAATCTG+AGG | 0.582293 | 7_4:+38690668 | Msa1152780:CDS |
| AGGGTGACGAACAATAACTA+TGG | 0.582427 | 7_4:-38695733 | None:intergenic |
| ACTAATGTAACTTGCTCCAA+GGG | 0.583686 | 7_4:-38693928 | None:intergenic |
| AAATTTCCATTGGAACGTTG+AGG | 0.585558 | 7_4:+38693221 | Msa1152780:CDS |
| TGGTGCAATATCTGAGAATG+AGG | 0.589262 | 7_4:+38693471 | Msa1152780:CDS |
| AAGTACAATCGTATAACGGA+TGG | 0.591205 | 7_4:-38696046 | None:intergenic |
| ACACTCCTATACAGCATAGC+CGG | 0.592211 | 7_4:+38694118 | Msa1152780:CDS |
| CTGAGGTCTTTGTATGCCAA+AGG | 0.596955 | 7_4:+38695983 | Msa1152780:three_prime_UTR |
| CTAGGAGGTCTTACCACGGC+CGG | 0.602603 | 7_4:+38693602 | Msa1152780:CDS |
| GAAGGGATCCACCCAATGCA+AGG | 0.617051 | 7_4:-38693757 | None:intergenic |
| AGTGTGAGAACAATAATGTC+TGG | 0.621424 | 7_4:-38694100 | None:intergenic |
| ATTTAACATCATATTTCACA+GGG | 0.625360 | 7_4:-38695428 | None:intergenic |
| AGAATATATATACGACAGAA+GGG | 0.635614 | 7_4:-38693774 | None:intergenic |
| GACACACTTACTTAGTCCTG+AGG | 0.641483 | 7_4:+38695966 | Msa1152780:three_prime_UTR |
| ACTGCAAAATGGATATGTGT+TGG | 0.658074 | 7_4:+38694732 | Msa1152780:CDS |
| ATATGGGTGCTGCTACTAGG+AGG | 0.658613 | 7_4:+38693587 | Msa1152780:CDS |
| ACTACACCCCAAACTAATGG+AGG | 0.659792 | 7_4:-38692974 | None:intergenic |
| GGTTACAGGATATCTACTTG+GGG | 0.668031 | 7_4:+38695193 | Msa1152780:intron |
| ATTCCTGACAGGATATACAC+AGG | 0.718157 | 7_4:+38693284 | Msa1152780:CDS |
| GCTACTAGGAGGTCTTACCA+CGG | 0.823660 | 7_4:+38693598 | Msa1152780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATAAGAACAAATTAAT+AGG | - | chr7_4:38692726-38692745 | None:intergenic | 15.0% |
| !! | ACAATATTGTGAATTTAATT+TGG | + | chr7_4:38692750-38692769 | Msa1152780:intron | 15.0% |
| !!! | TTTTTCTAGTTAAAACAAAA+TGG | + | chr7_4:38693888-38693907 | Msa1152780:intron | 15.0% |
| !!! | AGTTAGAAGTTTTGTTTTTT+TGG | + | chr7_4:38690644-38690663 | Msa1152780:CDS | 20.0% |
| !! | AGTACTTATAACTTATAAGT+GGG | - | chr7_4:38691093-38691112 | None:intergenic | 20.0% |
| !! | AAGTACTTATAACTTATAAG+TGG | - | chr7_4:38691094-38691113 | None:intergenic | 20.0% |
| !! | TAAGTTATAAGTACTTGTTT+AGG | + | chr7_4:38691098-38691117 | Msa1152780:intron | 20.0% |
| !!! | TCTGAATAATATCAATTTTC+AGG | - | chr7_4:38691499-38691518 | None:intergenic | 20.0% |
| !!! | ATGTTTTTATAAAACCCAAA+AGG | + | chr7_4:38691819-38691838 | Msa1152780:intron | 20.0% |
| !!! | AAAATTTGCTAATGTTTTTC+CGG | - | chr7_4:38692480-38692499 | None:intergenic | 20.0% |
| !! | ACAAATAAACAAGTAACAAA+AGG | - | chr7_4:38693529-38693548 | None:intergenic | 20.0% |
| !!! | AATGCAAATTTTCAAAAACT+TGG | + | chr7_4:38693681-38693700 | Msa1152780:intron | 20.0% |
| !! | TTTAAAAGAACTACCTTTAA+AGG | - | chr7_4:38693806-38693825 | None:intergenic | 20.0% |
| !! | AAAAGTAAATGAACATAACA+AGG | - | chr7_4:38694016-38694035 | None:intergenic | 20.0% |
| !! | AAAAACAACTTATGTCTTAT+AGG | - | chr7_4:38694318-38694337 | None:intergenic | 20.0% |
| !!! | AACAATGTTATTTGAACTTA+GGG | - | chr7_4:38694493-38694512 | None:intergenic | 20.0% |
| !! | ATTTATTAGCGTATATTTGA+GGG | - | chr7_4:38694802-38694821 | None:intergenic | 20.0% |
| !! | AATTTATTAGCGTATATTTG+AGG | - | chr7_4:38694803-38694822 | None:intergenic | 20.0% |
| !! | GGTAAAAAAAAATGTTCATA+TGG | - | chr7_4:38694899-38694918 | None:intergenic | 20.0% |
| !! | AGCGTTAATTAATGTTAATA+CGG | - | chr7_4:38694928-38694947 | None:intergenic | 20.0% |
| !!! | CATTTTGGTGATTTTATATA+TGG | + | chr7_4:38695172-38695191 | Msa1152780:intron | 20.0% |
| !! | ATTTAACATCATATTTCACA+GGG | - | chr7_4:38695431-38695450 | None:intergenic | 20.0% |
| !! | TATTTAACATCATATTTCAC+AGG | - | chr7_4:38695432-38695451 | None:intergenic | 20.0% |
| !! | GAAATATGATGTTAAATATC+AGG | + | chr7_4:38695434-38695453 | Msa1152780:CDS | 20.0% |
| !! | AAAACAAAAATTAGATAACC+CGG | - | chr7_4:38695764-38695783 | None:intergenic | 20.0% |
| !! | AAATTATCAAAAACCTAAGT+GGG | - | chr7_4:38695803-38695822 | None:intergenic | 20.0% |
| !!! | TTTTGATAATTTCTAAGTTC+AGG | + | chr7_4:38695811-38695830 | Msa1152780:three_prime_UTR | 20.0% |
| !!! | TACAATACATTTTGTACAAT+TGG | - | chr7_4:38695876-38695895 | None:intergenic | 20.0% |
| !! | ATACTTATTAAACCATGATA+AGG | - | chr7_4:38695919-38695938 | None:intergenic | 20.0% |
| !! | GAGAGAATAATATCAAATAA+AGG | - | chr7_4:38696022-38696041 | None:intergenic | 20.0% |
| ! | TACTTATAACTTATAAGTGG+GGG | - | chr7_4:38691091-38691110 | None:intergenic | 25.0% |
| ! | GTACTTATAACTTATAAGTG+GGG | - | chr7_4:38691092-38691111 | None:intergenic | 25.0% |
| ! | TTCAGAAAGGGAAATTATAA+AGG | - | chr7_4:38691373-38691392 | None:intergenic | 25.0% |
| ! | TCCATAATCAAATCAAATGA+GGG | - | chr7_4:38691459-38691478 | None:intergenic | 25.0% |
| ! | ATTGATATTATTCAGAGTTC+AGG | + | chr7_4:38691503-38691522 | Msa1152780:intron | 25.0% |
| ! | AAACATGGTTTCAAACTAAA+AGG | - | chr7_4:38691590-38691609 | None:intergenic | 25.0% |
| ! | CATAACAAGTTCAAAATTGA+TGG | - | chr7_4:38692125-38692144 | None:intergenic | 25.0% |
| ! | CTAAATCAATATGAAACACA+TGG | + | chr7_4:38692291-38692310 | Msa1152780:intron | 25.0% |
| ! | TACGTTTAAATGATGATCTT+TGG | + | chr7_4:38692575-38692594 | Msa1152780:intron | 25.0% |
| ! | AACAAATTAATAGGCGTTTA+TGG | - | chr7_4:38692717-38692736 | None:intergenic | 25.0% |
| !!! | AGTATAACTTTGGTTTTAAG+TGG | + | chr7_4:38692798-38692817 | Msa1152780:intron | 25.0% |
| ! | AATGAATTGTGCAGAATATA+TGG | + | chr7_4:38692915-38692934 | Msa1152780:intron | 25.0% |
| ! | ATGGAAATTTCCTTATCAAA+GGG | - | chr7_4:38693211-38693230 | None:intergenic | 25.0% |
| ! | AATGGAAATTTCCTTATCAA+AGG | - | chr7_4:38693212-38693231 | None:intergenic | 25.0% |
| ! | TTTGATAAGGAAATTTCCAT+TGG | + | chr7_4:38693211-38693230 | Msa1152780:intron | 25.0% |
| !! | ATGCAAGGTAAAAAAGTATA+GGG | - | chr7_4:38693745-38693764 | None:intergenic | 25.0% |
| !! | AATGCAAGGTAAAAAAGTAT+AGG | - | chr7_4:38693746-38693765 | None:intergenic | 25.0% |
| !!! | TATACTTTTTTACCTTGCAT+TGG | + | chr7_4:38693745-38693764 | Msa1152780:CDS | 25.0% |
| !!! | ATACTTTTTTACCTTGCATT+GGG | + | chr7_4:38693746-38693765 | Msa1152780:CDS | 25.0% |
| ! | AGAATATATATACGACAGAA+GGG | - | chr7_4:38693777-38693796 | None:intergenic | 25.0% |
| ! | TCTAGTTAAAACAAAATGGA+TGG | + | chr7_4:38693892-38693911 | Msa1152780:intron | 25.0% |
| ! | TTAAAACAAAATGGATGGAT+TGG | + | chr7_4:38693897-38693916 | Msa1152780:CDS | 25.0% |
| !!! | CATTGATTTCGTTTTCAATT+AGG | + | chr7_4:38694044-38694063 | Msa1152780:intron | 25.0% |
| !! | TATTCTTCATGACATTTTGT+TGG | + | chr7_4:38694152-38694171 | Msa1152780:intron | 25.0% |
| ! | CTAAGCTACTTATCTAAATA+CGG | - | chr7_4:38694200-38694219 | None:intergenic | 25.0% |
| ! | CTTATTTCCATAAGCTAATT+AGG | - | chr7_4:38694350-38694369 | None:intergenic | 25.0% |
| !! | GAACAATGTTATTTGAACTT+AGG | - | chr7_4:38694494-38694513 | None:intergenic | 25.0% |
| ! | GCAATGTAAAACAGAAAATT+AGG | - | chr7_4:38694516-38694535 | None:intergenic | 25.0% |
| !!! | ACTTTTGAAGTCATTTACAA+TGG | - | chr7_4:38694551-38694570 | None:intergenic | 25.0% |
| ! | TAATCAAACAAGATTGTCAA+AGG | - | chr7_4:38694684-38694703 | None:intergenic | 25.0% |
| ! | ATAAATGTTGTGATTGAAAC+AGG | + | chr7_4:38695048-38695067 | Msa1152780:intron | 25.0% |
| !! | GTGATTTTATATATGGTTAC+AGG | + | chr7_4:38695179-38695198 | Msa1152780:intron | 25.0% |
| !! | ATAAATTTTCTTATGTTGCC+AGG | + | chr7_4:38695551-38695570 | Msa1152780:intron | 25.0% |
| ! | GAAATTATCAAAAACCTAAG+TGG | - | chr7_4:38695804-38695823 | None:intergenic | 25.0% |
| !!! | TGAGACAGAAGTTTATTTTT+AGG | + | chr7_4:38695835-38695854 | Msa1152780:three_prime_UTR | 25.0% |
| ! | ACATAAACAATTCCTTATCA+TGG | + | chr7_4:38695904-38695923 | Msa1152780:three_prime_UTR | 25.0% |
| AATCAGCTTCTTGGTATTAA+AGG | + | chr7_4:38690729-38690748 | Msa1152780:CDS | 30.0% | |
| TTTGTTTCCATTCTCTGATT+TGG | + | chr7_4:38690794-38690813 | Msa1152780:intron | 30.0% | |
| TTCAAATCCAAATCAGAGAA+TGG | - | chr7_4:38690804-38690823 | None:intergenic | 30.0% | |
| !! | TTTGACTTCAATTTTCGTTG+CGG | + | chr7_4:38690826-38690845 | Msa1152780:intron | 30.0% |
| ACCATCTTGGAATTTGTAAT+TGG | + | chr7_4:38691022-38691041 | Msa1152780:intron | 30.0% | |
| CCATCTTGGAATTTGTAATT+GGG | + | chr7_4:38691023-38691042 | Msa1152780:intron | 30.0% | |
| TTAACCTTGTCATATGTGAT+TGG | - | chr7_4:38691172-38691191 | None:intergenic | 30.0% | |
| !! | CGTATAGTTTGTTAACTTAG+AGG | + | chr7_4:38691196-38691215 | Msa1152780:intron | 30.0% |
| AGGCATAATCAAACTAAACA+TGG | + | chr7_4:38691216-38691235 | Msa1152780:intron | 30.0% | |
| ACATGGAAACTATAGAGATA+AGG | + | chr7_4:38691233-38691252 | Msa1152780:intron | 30.0% | |
| GGTAGATAGAAAATCTACAT+AGG | - | chr7_4:38691311-38691330 | None:intergenic | 30.0% | |
| ATAGGGTTATTGTTCAGAAA+GGG | - | chr7_4:38691385-38691404 | None:intergenic | 30.0% | |
| CCATAATCAAATCAAATGAG+GGG | - | chr7_4:38691458-38691477 | None:intergenic | 30.0% | |
| GTCCATAATCAAATCAAATG+AGG | - | chr7_4:38691460-38691479 | None:intergenic | 30.0% | |
| ! | CTTTGTGGATGGATTTAAAT+TGG | - | chr7_4:38691927-38691946 | None:intergenic | 30.0% |
| CAATTTAAATCCATCCACAA+AGG | + | chr7_4:38691925-38691944 | Msa1152780:intron | 30.0% | |
| GAAGCCAAAATTAGAAAACA+CGG | + | chr7_4:38691997-38692016 | Msa1152780:intron | 30.0% | |
| ! | CTATCCGTGTTTTCTAATTT+TGG | - | chr7_4:38692004-38692023 | None:intergenic | 30.0% |
| !! | TTTGAACTTGTTATGCTCTT+TGG | + | chr7_4:38692130-38692149 | Msa1152780:intron | 30.0% |
| ATTTATGCTCATTGTAACAG+GGG | - | chr7_4:38692323-38692342 | None:intergenic | 30.0% | |
| CATTTATGCTCATTGTAACA+GGG | - | chr7_4:38692324-38692343 | None:intergenic | 30.0% | |
| ACATTTATGCTCATTGTAAC+AGG | - | chr7_4:38692325-38692344 | None:intergenic | 30.0% | |
| ATGAACAACAAAGTAGACAA+TGG | + | chr7_4:38692345-38692364 | Msa1152780:intron | 30.0% | |
| TGAACAACAAAGTAGACAAT+GGG | + | chr7_4:38692346-38692365 | Msa1152780:intron | 30.0% | |
| ! | TTCTAGAAATCACAACATCA+AGG | - | chr7_4:38692515-38692534 | None:intergenic | 30.0% |
| CATTTAAACGTAATCTACCA+GGG | - | chr7_4:38692567-38692586 | None:intergenic | 30.0% | |
| TCATTTAAACGTAATCTACC+AGG | - | chr7_4:38692568-38692587 | None:intergenic | 30.0% | |
| !!! | ATTTTAGAACACAGTAACTC+AGG | + | chr7_4:38692774-38692793 | Msa1152780:intron | 30.0% |
| ! | TAACTCAGGAAGTATAACTT+TGG | + | chr7_4:38692788-38692807 | Msa1152780:intron | 30.0% |
| ATAAACTATGCCCTTTGATA+AGG | + | chr7_4:38693198-38693217 | Msa1152780:intron | 30.0% | |
| !! | ATTTTATGCATGATGATGTC+TGG | + | chr7_4:38693258-38693277 | Msa1152780:CDS | 30.0% |
| CATTTATTGCGTCAATTTCT+CGG | - | chr7_4:38693429-38693448 | None:intergenic | 30.0% | |
| AGTACTCACTAAACAATTAC+AGG | + | chr7_4:38693644-38693663 | Msa1152780:intron | 30.0% | |
| AAATTTGCATTCAGAAGAGA+CGG | - | chr7_4:38693672-38693691 | None:intergenic | 30.0% | |
| CAGAATATATATACGACAGA+AGG | - | chr7_4:38693778-38693797 | None:intergenic | 30.0% | |
| ! | AAAAGAACTACCTTTAAAGG+AGG | - | chr7_4:38693803-38693822 | None:intergenic | 30.0% |
| ! | TGATTTCGTTTTCAATTAGG+TGG | + | chr7_4:38694047-38694066 | Msa1152780:intron | 30.0% |
| ! | GATTTCGTTTTCAATTAGGT+GGG | + | chr7_4:38694048-38694067 | Msa1152780:intron | 30.0% |
| GAAGAATATAGTACATACTC+CGG | - | chr7_4:38694140-38694159 | None:intergenic | 30.0% | |
| GCTTATATGATAAGCTTGTA+TGG | - | chr7_4:38694243-38694262 | None:intergenic | 30.0% | |
| ! | TAGCTATCCTAATTAGCTTA+TGG | + | chr7_4:38694340-38694359 | Msa1152780:intron | 30.0% |
| GCATAAAAACTTGACTGTTT+GGG | - | chr7_4:38694419-38694438 | None:intergenic | 30.0% | |
| ACTTATTTGCACTTATCTAC+TGG | - | chr7_4:38694441-38694460 | None:intergenic | 30.0% | |
| ! | TTTCTGTTTTACATTGCAGT+TGG | + | chr7_4:38694519-38694538 | Msa1152780:intron | 30.0% |
| ! | TTCTGTTTTACATTGCAGTT+GGG | + | chr7_4:38694520-38694539 | Msa1152780:intron | 30.0% |
| !! | AATGACTTCAAAAGTGTTGA+AGG | + | chr7_4:38694556-38694575 | Msa1152780:intron | 30.0% |
| AAAGTTCAGATTAGAGTTAC+TGG | - | chr7_4:38694629-38694648 | None:intergenic | 30.0% | |
| TTAATGTTAATACGGTGACT+TGG | - | chr7_4:38694920-38694939 | None:intergenic | 30.0% | |
| ACATTAATTAACGCTGCAAA+AGG | + | chr7_4:38694933-38694952 | Msa1152780:intron | 30.0% | |
| ! | TAGAACTGTCTTGATCATTT+TGG | + | chr7_4:38695157-38695176 | Msa1152780:intron | 30.0% |
| AGTAAAGCTAATGCGTAATA+CGG | - | chr7_4:38695227-38695246 | None:intergenic | 30.0% | |
| TTTACCTGAAAAAAGACTTG+TGG | - | chr7_4:38695263-38695282 | None:intergenic | 30.0% | |
| !! | TAGACTGCTTTTATGTATTG+TGG | + | chr7_4:38695347-38695366 | Msa1152780:intron | 30.0% |
| !! | ATTAGACGAAGAAGTTTTAG+AGG | - | chr7_4:38695473-38695492 | None:intergenic | 30.0% |
| TTCGTGAAATTCTTTCTAAC+TGG | - | chr7_4:38695662-38695681 | None:intergenic | 30.0% | |
| GAAAGAATTTCACGAATTAG+CGG | + | chr7_4:38695666-38695685 | Msa1152780:three_prime_UTR | 30.0% | |
| TGTGTCTATAAACCATGAAA+GGG | - | chr7_4:38695952-38695971 | None:intergenic | 30.0% | |
| AGGTAGAATAATCTTTCCTT+TGG | - | chr7_4:38696002-38696021 | None:intergenic | 30.0% | |
| ! | TGTTTCTGCAGTTAAATCTG+AGG | + | chr7_4:38690668-38690687 | Msa1152780:CDS | 35.0% |
| !! | AAGTTCACTCACTGATTCTT+GGG | - | chr7_4:38690760-38690779 | None:intergenic | 35.0% |
| ! | GTTTGAAACGATCACATGTT+TGG | + | chr7_4:38690855-38690874 | Msa1152780:intron | 35.0% |
| CCCAATTACAAATTCCAAGA+TGG | - | chr7_4:38691026-38691045 | None:intergenic | 35.0% | |
| CTAACACAACCACACAAAAT+TGG | + | chr7_4:38691047-38691066 | Msa1152780:intron | 35.0% | |
| TTGACCAATCACATATGACA+AGG | + | chr7_4:38691165-38691184 | Msa1152780:intron | 35.0% | |
| GGGAAATTATAAAGGATCAG+AGG | - | chr7_4:38691365-38691384 | None:intergenic | 35.0% | |
| GATAGGGTTATTGTTCAGAA+AGG | - | chr7_4:38691386-38691405 | None:intergenic | 35.0% | |
| TGAACAATAACCCTATCCAA+AGG | + | chr7_4:38691389-38691408 | Msa1152780:intron | 35.0% | |
| ! | CAAAATCTTGAGGCATCAAA+GGG | - | chr7_4:38691418-38691437 | None:intergenic | 35.0% |
| ! | ACAAAATCTTGAGGCATCAA+AGG | - | chr7_4:38691419-38691438 | None:intergenic | 35.0% |
| !! | CCCCTCATTTGATTTGATTA+TGG | + | chr7_4:38691455-38691474 | Msa1152780:intron | 35.0% |
| ATATTATTCAGAGTTCAGGC+AGG | + | chr7_4:38691507-38691526 | Msa1152780:intron | 35.0% | |
| !! | AGTTTGAAACCATGTTTTGC+AGG | + | chr7_4:38691593-38691612 | Msa1152780:intron | 35.0% |
| CTTACGTCTCAAATTGACAA+TGG | + | chr7_4:38691792-38691811 | Msa1152780:intron | 35.0% | |
| AAAACCCAAAAGGCAACAAT+TGG | + | chr7_4:38691829-38691848 | Msa1152780:intron | 35.0% | |
| ! | TCATCCAATTGTTGCCTTTT+GGG | - | chr7_4:38691836-38691855 | None:intergenic | 35.0% |
| ! | ATCATCCAATTGTTGCCTTT+TGG | - | chr7_4:38691837-38691856 | None:intergenic | 35.0% |
| AAGGCAACAATTGGATGATA+AGG | + | chr7_4:38691838-38691857 | Msa1152780:intron | 35.0% | |
| AATTGGATGATAAGGCTTAG+TGG | + | chr7_4:38691846-38691865 | Msa1152780:intron | 35.0% | |
| CTAGTTAAGTGCTACAACAT+AGG | - | chr7_4:38691886-38691905 | None:intergenic | 35.0% | |
| TTAAATCCATCCACAAAGGA+AGG | + | chr7_4:38691929-38691948 | Msa1152780:intron | 35.0% | |
| TAAATCCATCCACAAAGGAA+GGG | + | chr7_4:38691930-38691949 | Msa1152780:intron | 35.0% | |
| AAATATAACCCCTTCCTTTG+TGG | - | chr7_4:38691942-38691961 | None:intergenic | 35.0% | |
| !!! | ATTTTGGCTTCGTTTATGCT+GGG | - | chr7_4:38691988-38692007 | None:intergenic | 35.0% |
| !!! | AATTTTGGCTTCGTTTATGC+TGG | - | chr7_4:38691989-38692008 | None:intergenic | 35.0% |
| AACTTTGCAAGGAATCCAAA+GGG | + | chr7_4:38692036-38692055 | Msa1152780:intron | 35.0% | |
| TAAATGAACCTTACGCTGAT+GGG | + | chr7_4:38692068-38692087 | Msa1152780:intron | 35.0% | |
| !! | TTGAACTTGTTATGCTCTGA+TGG | + | chr7_4:38692092-38692111 | Msa1152780:intron | 35.0% |
| !! | TGAACTTGTTATGCTCTGAT+GGG | + | chr7_4:38692093-38692112 | Msa1152780:intron | 35.0% |
| CTTGTCTTAGTAAACTCTTG+TGG | + | chr7_4:38692177-38692196 | Msa1152780:intron | 35.0% | |
| GTGATCAACTTAGCATTGTT+TGG | - | chr7_4:38692218-38692237 | None:intergenic | 35.0% | |
| TTTATGCTCATTGTAACAGG+GGG | - | chr7_4:38692322-38692341 | None:intergenic | 35.0% | |
| TGTTATCCTCATTGCAGAAA+TGG | + | chr7_4:38692369-38692388 | Msa1152780:intron | 35.0% | |
| TGTTTACCATTTCTGCAATG+AGG | - | chr7_4:38692378-38692397 | None:intergenic | 35.0% | |
| CAGTATTACTATGCTCTCTT+TGG | - | chr7_4:38692639-38692658 | None:intergenic | 35.0% | |
| TATATACTATGCAGTGTAGC+AGG | - | chr7_4:38692667-38692686 | None:intergenic | 35.0% | |
| AACTTACAAAGCCTGTAACT+TGG | + | chr7_4:38692951-38692970 | Msa1152780:CDS | 35.0% | |
| ACATTAAAATGCGACATGCA+TGG | + | chr7_4:38693035-38693054 | Msa1152780:intron | 35.0% | |
| CAATTGTCATAGCAAATCAC+AGG | - | chr7_4:38693077-38693096 | None:intergenic | 35.0% | |
| TATCCAATGCTTCATCTTCA+TGG | + | chr7_4:38693124-38693143 | Msa1152780:intron | 35.0% | |
| ATACCATGAAGATGAAGCAT+TGG | - | chr7_4:38693130-38693149 | None:intergenic | 35.0% | |
| AAATTTCCATTGGAACGTTG+AGG | + | chr7_4:38693221-38693240 | Msa1152780:CDS | 35.0% | |
| ! | GTTTTATACTCCCATTCGAT+AGG | - | chr7_4:38693346-38693365 | None:intergenic | 35.0% |
| ! | TCTTTTAGACCCTGAATGAT+TGG | + | chr7_4:38693398-38693417 | Msa1152780:intron | 35.0% |
| !!! | GATTACCTGCAGGTTTTTTA+GGG | - | chr7_4:38693561-38693580 | None:intergenic | 35.0% |
| !!! | TGATTACCTGCAGGTTTTTT+AGG | - | chr7_4:38693562-38693581 | None:intergenic | 35.0% |
| ATATTTGAGTGATTACCTGC+AGG | - | chr7_4:38693571-38693590 | None:intergenic | 35.0% | |
| TGCAGGTAATCACTCAAATA+TGG | + | chr7_4:38693570-38693589 | Msa1152780:intron | 35.0% | |
| GCAGGTAATCACTCAAATAT+GGG | + | chr7_4:38693571-38693590 | Msa1152780:intron | 35.0% | |
| CACCCATATATCCAATATAC+CGG | - | chr7_4:38693624-38693643 | None:intergenic | 35.0% | |
| ! | GCTCAAATTTTCTCCTTTAC+AGG | + | chr7_4:38693706-38693725 | Msa1152780:intron | 35.0% |
| ! | AAATTTTCTCCTTTACAGGC+AGG | + | chr7_4:38693710-38693729 | Msa1152780:intron | 35.0% |
| ! | AATTTTCTCCTTTACAGGCA+GGG | + | chr7_4:38693711-38693730 | Msa1152780:intron | 35.0% |
| ATATTCTGCACCTCCTTTAA+AGG | + | chr7_4:38693790-38693809 | Msa1152780:CDS | 35.0% | |
| ! | TCTGTATCTTTTGCCTTTGA+TGG | + | chr7_4:38693844-38693863 | Msa1152780:intron | 35.0% |
| !! | ACTAATGTAACTTGCTCCAA+GGG | - | chr7_4:38693931-38693950 | None:intergenic | 35.0% |
| !! | AACTAATGTAACTTGCTCCA+AGG | - | chr7_4:38693932-38693951 | None:intergenic | 35.0% |
| !! | CAAGTTACATTAGTTTGCCA+TGG | + | chr7_4:38693937-38693956 | Msa1152780:CDS | 35.0% |
| CAACGACTTATCAAAAGAGA+AGG | - | chr7_4:38693970-38693989 | None:intergenic | 35.0% | |
| AGTGTGAGAACAATAATGTC+TGG | - | chr7_4:38694103-38694122 | None:intergenic | 35.0% | |
| GGCATAAAAACTTGACTGTT+TGG | - | chr7_4:38694420-38694439 | None:intergenic | 35.0% | |
| !! | TTGGTTCTGAAACTGCAAAA+TGG | + | chr7_4:38694721-38694740 | Msa1152780:CDS | 35.0% |
| ACTGCAAAATGGATATGTGT+TGG | + | chr7_4:38694732-38694751 | Msa1152780:CDS | 35.0% | |
| ATTACACAATTATCTGTCGC+TGG | + | chr7_4:38694765-38694784 | Msa1152780:CDS | 35.0% | |
| ATTTAATGACGCAAGAGCTA+AGG | + | chr7_4:38694981-38695000 | Msa1152780:intron | 35.0% | |
| TTTAATGACGCAAGAGCTAA+GGG | + | chr7_4:38694982-38695001 | Msa1152780:intron | 35.0% | |
| ATGGTTACAGGATATCTACT+TGG | + | chr7_4:38695191-38695210 | Msa1152780:intron | 35.0% | |
| TGGTTACAGGATATCTACTT+GGG | + | chr7_4:38695192-38695211 | Msa1152780:intron | 35.0% | |
| AAAGACTTGTGGAGCTATTA+AGG | - | chr7_4:38695252-38695271 | None:intergenic | 35.0% | |
| CAAGGCAAAAGATGAAAAGA+AGG | - | chr7_4:38695385-38695404 | None:intergenic | 35.0% | |
| GAGAAAATACTTGAACTGCA+AGG | - | chr7_4:38695403-38695422 | None:intergenic | 35.0% | |
| ! | GCAGTTCAAGTATTTTCTCA+AGG | + | chr7_4:38695404-38695423 | Msa1152780:intron | 35.0% |
| AACAGACCAAGAACCAAAAA+TGG | - | chr7_4:38695588-38695607 | None:intergenic | 35.0% | |
| !!! | ATTTTTGGTTCTTGGTCTGT+TGG | + | chr7_4:38695587-38695606 | Msa1152780:CDS | 35.0% |
| ! | ATGGCACACATCTTTAACTT+AGG | - | chr7_4:38695717-38695736 | None:intergenic | 35.0% |
| ATAATCTTGAGTCCCTTTCA+TGG | + | chr7_4:38695937-38695956 | Msa1152780:three_prime_UTR | 35.0% | |
| GTGTGTCTATAAACCATGAA+AGG | - | chr7_4:38695953-38695972 | None:intergenic | 35.0% | |
| !! | AAGCTTGATCCATTTTTCGC+AGG | - | chr7_4:38690708-38690727 | None:intergenic | 40.0% |
| TCAAGCTTCAATCAGCTTCT+TGG | + | chr7_4:38690720-38690739 | Msa1152780:CDS | 40.0% | |
| !! | GAAGTTCACTCACTGATTCT+TGG | - | chr7_4:38690761-38690780 | None:intergenic | 40.0% |
| ! | ACTTCAATTTTCGTTGCGGA+TGG | + | chr7_4:38690830-38690849 | Msa1152780:intron | 40.0% |
| TGACATGTCTGATACCATCT+TGG | + | chr7_4:38691009-38691028 | Msa1152780:intron | 40.0% | |
| TGCTGTTAAGAGTCTCACAT+TGG | - | chr7_4:38691136-38691155 | None:intergenic | 40.0% | |
| GTTTCCTCACACAAAAGTGA+AGG | + | chr7_4:38691282-38691301 | Msa1152780:intron | 40.0% | |
| CAAAGGGTAACCTTTGGATA+GGG | - | chr7_4:38691402-38691421 | None:intergenic | 40.0% | |
| TCAAAGGGTAACCTTTGGAT+AGG | - | chr7_4:38691403-38691422 | None:intergenic | 40.0% | |
| TGATTTCACCCAGTGTCAAA+GGG | + | chr7_4:38691561-38691580 | Msa1152780:intron | 40.0% | |
| GAATTTGCACCATGCAAAAG+TGG | - | chr7_4:38691698-38691717 | None:intergenic | 40.0% | |
| AAATCCATCCACAAAGGAAG+GGG | + | chr7_4:38691931-38691950 | Msa1152780:intron | 40.0% | |
| CTCATCATAGCAACTTTGCA+AGG | + | chr7_4:38692025-38692044 | Msa1152780:intron | 40.0% | |
| CAACTTTGCAAGGAATCCAA+AGG | + | chr7_4:38692035-38692054 | Msa1152780:intron | 40.0% | |
| CATTTACCTTCTTGACCCTT+TGG | - | chr7_4:38692054-38692073 | None:intergenic | 40.0% | |
| GTAAATGAACCTTACGCTGA+TGG | + | chr7_4:38692067-38692086 | Msa1152780:intron | 40.0% | |
| CAAGACTTTGTGAGTATACC+AGG | - | chr7_4:38692161-38692180 | None:intergenic | 40.0% | |
| CAGTTCTATCTCAATACGCT+GGG | - | chr7_4:38692255-38692274 | None:intergenic | 40.0% | |
| CCTGAGTTTCACAAACTGAT+AGG | - | chr7_4:38692456-38692475 | None:intergenic | 40.0% | |
| CCTATCAGTTTGTGAAACTC+AGG | + | chr7_4:38692453-38692472 | Msa1152780:intron | 40.0% | |
| TCACAACATCAAGGACATGT+AGG | - | chr7_4:38692506-38692525 | None:intergenic | 40.0% | |
| GATAAACCAGTTAAGTTCCC+TGG | + | chr7_4:38692547-38692566 | Msa1152780:intron | 40.0% | |
| AATCTACCAGGGAACTTAAC+TGG | - | chr7_4:38692556-38692575 | None:intergenic | 40.0% | |
| ! | AATAGGCGTTTATGGATTGC+AGG | - | chr7_4:38692709-38692728 | None:intergenic | 40.0% |
| TAACTTGGCCTCCATTAGTT+TGG | + | chr7_4:38692966-38692985 | Msa1152780:CDS | 40.0% | |
| ! | AACTTGGCCTCCATTAGTTT+GGG | + | chr7_4:38692967-38692986 | Msa1152780:CDS | 40.0% |
| CAAACTACACCCCAAACTAA+TGG | - | chr7_4:38692980-38692999 | None:intergenic | 40.0% | |
| ! | TTAGTTTGGGGTGTAGTTTG+TGG | + | chr7_4:38692980-38692999 | Msa1152780:CDS | 40.0% |
| GTGTATATCCTGTCAGGAAT+GGG | - | chr7_4:38693284-38693303 | None:intergenic | 40.0% | |
| TGTGTATATCCTGTCAGGAA+TGG | - | chr7_4:38693285-38693304 | None:intergenic | 40.0% | |
| ATTCCTGACAGGATATACAC+AGG | + | chr7_4:38693284-38693303 | Msa1152780:CDS | 40.0% | |
| TTACCTGTGTATATCCTGTC+AGG | - | chr7_4:38693290-38693309 | None:intergenic | 40.0% | |
| !!! | TTTTACCGACTCCTATCGAA+TGG | + | chr7_4:38693332-38693351 | Msa1152780:intron | 40.0% |
| !! | TTTACCGACTCCTATCGAAT+GGG | + | chr7_4:38693333-38693352 | Msa1152780:intron | 40.0% |
| TCGGTCATACCAATCATTCA+GGG | - | chr7_4:38693410-38693429 | None:intergenic | 40.0% | |
| ! | CCAGAAGGAATTGGTCTATA+AGG | - | chr7_4:38693454-38693473 | None:intergenic | 40.0% |
| CCTTATAGACCAATTCCTTC+TGG | + | chr7_4:38693451-38693470 | Msa1152780:CDS | 40.0% | |
| GATATTGCACCAGAAGGAAT+TGG | - | chr7_4:38693463-38693482 | None:intergenic | 40.0% | |
| TTCTCAGATATTGCACCAGA+AGG | - | chr7_4:38693469-38693488 | None:intergenic | 40.0% | |
| TGGTGCAATATCTGAGAATG+AGG | + | chr7_4:38693471-38693490 | Msa1152780:CDS | 40.0% | |
| ! | CTTTTCCCTAAAAAACCTGC+AGG | + | chr7_4:38693553-38693572 | Msa1152780:intron | 40.0% |
| GGCCGGTATATTGGATATAT+GGG | + | chr7_4:38693619-38693638 | Msa1152780:CDS | 40.0% | |
| !!! | CTTTTTTACCTTGCATTGGG+TGG | + | chr7_4:38693749-38693768 | Msa1152780:CDS | 40.0% |
| CGTAGTCAAATGACCATCAA+AGG | - | chr7_4:38693860-38693879 | None:intergenic | 40.0% | |
| !! | TACATTAGTTTGCCATGGTG+TGG | + | chr7_4:38693942-38693961 | Msa1152780:intron | 40.0% |
| TGTTTGACATAGGGTCTGTT+TGG | - | chr7_4:38694468-38694487 | None:intergenic | 40.0% | |
| CTTAGGGTCTGTTTGACATA+GGG | - | chr7_4:38694477-38694496 | None:intergenic | 40.0% | |
| ACTTAGGGTCTGTTTGACAT+AGG | - | chr7_4:38694478-38694497 | None:intergenic | 40.0% | |
| TTGAAGGAGATAGAGCTCTA+GGG | + | chr7_4:38694572-38694591 | Msa1152780:intron | 40.0% | |
| !!! | TAGTCTCTTCCTGTTGCTTT+TGG | + | chr7_4:38694702-38694721 | Msa1152780:intron | 40.0% |
| GTTTCAGAACCAAAAGCAAC+AGG | - | chr7_4:38694714-38694733 | None:intergenic | 40.0% | |
| ! | CATGCTTTGACTGTTTTGCA+TGG | + | chr7_4:38694843-38694862 | Msa1152780:intron | 40.0% |
| TGGTATTACAACAACAACGC+TGG | + | chr7_4:38694863-38694882 | Msa1152780:intron | 40.0% | |
| GGTTACAGGATATCTACTTG+GGG | + | chr7_4:38695193-38695212 | Msa1152780:intron | 40.0% | |
| !!! | AGCTCCACAAGTCTTTTTTC+AGG | + | chr7_4:38695256-38695275 | Msa1152780:CDS | 40.0% |
| !!! | GCACAACCATTTTTGGTTCT+TGG | + | chr7_4:38695579-38695598 | Msa1152780:CDS | 40.0% |
| ! | GCTTCACATCTTTTTGTCAG+TGG | - | chr7_4:38695632-38695651 | None:intergenic | 40.0% |
| AGGGTGACGAACAATAACTA+TGG | - | chr7_4:38695736-38695755 | None:intergenic | 40.0% | |
| ATTAGATAACCCGGTATGCA+GGG | - | chr7_4:38695755-38695774 | None:intergenic | 40.0% | |
| AATTAGATAACCCGGTATGC+AGG | - | chr7_4:38695756-38695775 | None:intergenic | 40.0% | |
| CAATCTTCTCTTACCCACTT+AGG | + | chr7_4:38695787-38695806 | Msa1152780:three_prime_UTR | 40.0% | |
| ! | TGCAGTTAAATCTGAGGCAC+CGG | + | chr7_4:38690674-38690693 | Msa1152780:CDS | 45.0% |
| !! | TAAATCTGAGGCACCGGATA+AGG | + | chr7_4:38690680-38690699 | Msa1152780:CDS | 45.0% |
| !! | TTTTTCGCAGGAGCCTTATC+CGG | - | chr7_4:38690696-38690715 | None:intergenic | 45.0% |
| GATAAGGCTCCTGCGAAAAA+TGG | + | chr7_4:38690696-38690715 | Msa1152780:CDS | 45.0% | |
| ! | CCTCACAAGCCAATTTTGTG+TGG | - | chr7_4:38691059-38691078 | None:intergenic | 45.0% |
| !! | CCACACAAAATTGGCTTGTG+AGG | + | chr7_4:38691056-38691075 | Msa1152780:intron | 45.0% |
| !! | CAAAATTGGCTTGTGAGGTG+AGG | + | chr7_4:38691061-38691080 | Msa1152780:intron | 45.0% |
| !! | GACTCCTTCACTTTTGTGTG+AGG | - | chr7_4:38691289-38691308 | None:intergenic | 45.0% |
| ! | AAAGGATCAGAGGTGTACTC+AGG | - | chr7_4:38691355-38691374 | None:intergenic | 45.0% |
| AGGCATCAAAGGGTAACCTT+TGG | - | chr7_4:38691408-38691427 | None:intergenic | 45.0% | |
| AGGCAGGGTACAAAATCTTG+AGG | - | chr7_4:38691428-38691447 | None:intergenic | 45.0% | |
| TGGGTGAAATCAGAGACTTG+CGG | - | chr7_4:38691553-38691572 | None:intergenic | 45.0% | |
| CTGATTTCACCCAGTGTCAA+AGG | + | chr7_4:38691560-38691579 | Msa1152780:intron | 45.0% | |
| GATTTCACCCAGTGTCAAAG+GGG | + | chr7_4:38691562-38691581 | Msa1152780:intron | 45.0% | |
| AAAGGTTCCCCTTTGACACT+GGG | - | chr7_4:38691572-38691591 | None:intergenic | 45.0% | |
| AAAAGGTTCCCCTTTGACAC+TGG | - | chr7_4:38691573-38691592 | None:intergenic | 45.0% | |
| GGGTGTAAACCTGCAAAACA+TGG | - | chr7_4:38691605-38691624 | None:intergenic | 45.0% | |
| TTACACCCCCAAAATACCTG+TGG | + | chr7_4:38691617-38691636 | Msa1152780:intron | 45.0% | |
| !! | ACTCACCACAGGTATTTTGG+GGG | - | chr7_4:38691625-38691644 | None:intergenic | 45.0% |
| ! | CACTCACCACAGGTATTTTG+GGG | - | chr7_4:38691626-38691645 | None:intergenic | 45.0% |
| ! | CCACTCACCACAGGTATTTT+GGG | - | chr7_4:38691627-38691646 | None:intergenic | 45.0% |
| ! | ACCACTCACCACAGGTATTT+TGG | - | chr7_4:38691628-38691647 | None:intergenic | 45.0% |
| ATAACCCCTTCCTTTGTGGA+TGG | - | chr7_4:38691938-38691957 | None:intergenic | 45.0% | |
| TCGTTTATGCTGGGAGCTAT+GGG | - | chr7_4:38691979-38691998 | None:intergenic | 45.0% | |
| TTCGTTTATGCTGGGAGCTA+TGG | - | chr7_4:38691980-38691999 | None:intergenic | 45.0% | |
| AGGAATCCAAAGGGTCAAGA+AGG | + | chr7_4:38692045-38692064 | Msa1152780:intron | 45.0% | |
| AGTTCAAACCCATCAGCGTA+AGG | - | chr7_4:38692079-38692098 | None:intergenic | 45.0% | |
| TTATGCTCTTTGGTCTGACC+TGG | + | chr7_4:38692140-38692159 | Msa1152780:intron | 45.0% | |
| ACTCTTGTGGTCAAGAACCA+AGG | + | chr7_4:38692190-38692209 | Msa1152780:intron | 45.0% | |
| CTCTTGTGGTCAAGAACCAA+GGG | + | chr7_4:38692191-38692210 | Msa1152780:intron | 45.0% | |
| CTTAGCATTGTTTGGACCCT+TGG | - | chr7_4:38692210-38692229 | None:intergenic | 45.0% | |
| CCAGTTCTATCTCAATACGC+TGG | - | chr7_4:38692256-38692275 | None:intergenic | 45.0% | |
| CCAGCGTATTGAGATAGAAC+TGG | + | chr7_4:38692253-38692272 | Msa1152780:intron | 45.0% | |
| TCACAAACTGATAGGCCCAA+GGG | - | chr7_4:38692448-38692467 | None:intergenic | 45.0% | |
| TTCACAAACTGATAGGCCCA+AGG | - | chr7_4:38692449-38692468 | None:intergenic | 45.0% | |
| CAGTTTGTGAAACTCAGGTC+CGG | + | chr7_4:38692458-38692477 | Msa1152780:intron | 45.0% | |
| ACTAATGGAGGCCAAGTTAC+AGG | - | chr7_4:38692965-38692984 | None:intergenic | 45.0% | |
| ! | ACTTGGCCTCCATTAGTTTG+GGG | + | chr7_4:38692968-38692987 | Msa1152780:CDS | 45.0% |
| ACTACACCCCAAACTAATGG+AGG | - | chr7_4:38692977-38692996 | None:intergenic | 45.0% | |
| CAACATCCTCAACGTTCCAA+TGG | - | chr7_4:38693230-38693249 | None:intergenic | 45.0% | |
| TACTCCCATTCGATAGGAGT+CGG | - | chr7_4:38693340-38693359 | None:intergenic | 45.0% | |
| CTCGGTCATACCAATCATTC+AGG | - | chr7_4:38693411-38693430 | None:intergenic | 45.0% | |
| !! | CAAATATGGGTGCTGCTACT+AGG | + | chr7_4:38693584-38693603 | Msa1152780:CDS | 45.0% |
| TATATCCAATATACCGGCCG+TGG | - | chr7_4:38693618-38693637 | None:intergenic | 45.0% | |
| CGGCCGGTATATTGGATATA+TGG | + | chr7_4:38693618-38693637 | Msa1152780:CDS | 45.0% | |
| AAATCATGCCCTGCCTGTAA+AGG | - | chr7_4:38693722-38693741 | None:intergenic | 45.0% | |
| ! | TGGATTGGAAACTTTGCCCT+TGG | + | chr7_4:38693912-38693931 | Msa1152780:CDS | 45.0% |
| !! | AAAGAGAAGGTACCACACCA+TGG | - | chr7_4:38693957-38693976 | None:intergenic | 45.0% |
| ! | TCGTTTTCAATTAGGTGGGC+TGG | + | chr7_4:38694052-38694071 | Msa1152780:intron | 45.0% |
| ACACTCCTATACAGCATAGC+CGG | + | chr7_4:38694118-38694137 | Msa1152780:CDS | 45.0% | |
| ATACTCCGGCTATGCTGTAT+AGG | - | chr7_4:38694126-38694145 | None:intergenic | 45.0% | |
| GTTGAAGGAGATAGAGCTCT+AGG | + | chr7_4:38694571-38694590 | Msa1152780:intron | 45.0% | |
| AAAATGGTTGTGCACTAGCC+TGG | - | chr7_4:38695572-38695591 | None:intergenic | 45.0% | |
| ! | GGCTAGTGCACAACCATTTT+TGG | + | chr7_4:38695572-38695591 | Msa1152780:intron | 45.0% |
| GACACACTTACTTAGTCCTG+AGG | + | chr7_4:38695966-38695985 | Msa1152780:three_prime_UTR | 45.0% | |
| CTTTGGCATACAAAGACCTC+AGG | - | chr7_4:38695985-38696004 | None:intergenic | 45.0% | |
| CTGAGGTCTTTGTATGCCAA+AGG | + | chr7_4:38695983-38696002 | Msa1152780:three_prime_UTR | 45.0% | |
| GGTGTACTCAGGTGCAGATT+CGG | - | chr7_4:38691344-38691363 | None:intergenic | 50.0% | |
| !! | CAAATCAAATGAGGGGCGCT+TGG | - | chr7_4:38691451-38691470 | None:intergenic | 50.0% |
| GGTGAAATCAGAGACTTGCG+GGG | - | chr7_4:38691551-38691570 | None:intergenic | 50.0% | |
| GGGTGAAATCAGAGACTTGC+GGG | - | chr7_4:38691552-38691571 | None:intergenic | 50.0% | |
| CCCAAAATACCTGTGGTGAG+TGG | + | chr7_4:38691624-38691643 | Msa1152780:intron | 50.0% | |
| CTACAAAGACCACTCACCAC+AGG | - | chr7_4:38691636-38691655 | None:intergenic | 50.0% | |
| !!! | AATGCCGAGCCACTTTTGCA+TGG | + | chr7_4:38691686-38691705 | Msa1152780:intron | 50.0% |
| TGCACCATGCAAAAGTGGCT+CGG | - | chr7_4:38691693-38691712 | None:intergenic | 50.0% | |
| ACAAACTGATAGGCCCAAGG+GGG | - | chr7_4:38692446-38692465 | None:intergenic | 50.0% | |
| CACAAACTGATAGGCCCAAG+GGG | - | chr7_4:38692447-38692466 | None:intergenic | 50.0% | |
| !! | ATATGGGTGCTGCTACTAGG+AGG | + | chr7_4:38693587-38693606 | Msa1152780:CDS | 50.0% |
| GCTACTAGGAGGTCTTACCA+CGG | + | chr7_4:38693598-38693617 | Msa1152780:CDS | 50.0% | |
| TCTTACCACGGCCGGTATAT+TGG | + | chr7_4:38693610-38693629 | Msa1152780:CDS | 50.0% | |
| !! | TTCAATTAGGTGGGCTGGTC+AGG | + | chr7_4:38694057-38694076 | Msa1152780:intron | 50.0% |
| !! | AGATAGAGCTCTAGGGCTTC+AGG | + | chr7_4:38694579-38694598 | Msa1152780:intron | 50.0% |
| ACAGGATATCTACTTGGGGC+TGG | + | chr7_4:38695197-38695216 | Msa1152780:intron | 50.0% | |
| ! | CACGAATTAGCGGCTTTTGC+TGG | + | chr7_4:38695676-38695695 | Msa1152780:three_prime_UTR | 50.0% |
| TTGTTCGTCACCCTGCATAC+CGG | + | chr7_4:38695742-38695761 | Msa1152780:three_prime_UTR | 50.0% | |
| ! | TGCAGATTCGGCTGGTTCAG+TGG | - | chr7_4:38691332-38691351 | None:intergenic | 55.0% |
| TACTCAGGTGCAGATTCGGC+TGG | - | chr7_4:38691340-38691359 | None:intergenic | 55.0% | |
| !! | ATCAAATGAGGGGCGCTTGG+AGG | - | chr7_4:38691448-38691467 | None:intergenic | 55.0% |
| ! | AGAGGGGATGGGGAGTGTAA+AGG | - | chr7_4:38692423-38692442 | None:intergenic | 55.0% |
| GTTTGTGGTGCAGCTGCTTC+AGG | + | chr7_4:38692995-38693014 | Msa1152780:CDS | 55.0% | |
| ATGTCTGGCCCATTCCTGAC+AGG | + | chr7_4:38693273-38693292 | Msa1152780:CDS | 55.0% | |
| GAAGGGATCCACCCAATGCA+AGG | - | chr7_4:38693760-38693779 | None:intergenic | 55.0% | |
| !! | TGGGCTGGTCAGGCTTTGTT+TGG | + | chr7_4:38694067-38694086 | Msa1152780:CDS | 55.0% |
| !! | GGGCTGGTCAGGCTTTGTTT+GGG | + | chr7_4:38694068-38694087 | Msa1152780:CDS | 55.0% |
| TGTTCGTCACCCTGCATACC+GGG | + | chr7_4:38695743-38695762 | Msa1152780:three_prime_UTR | 55.0% | |
| TGATAGGCCCAAGGGGGAGA+GGG | - | chr7_4:38692440-38692459 | None:intergenic | 60.0% | |
| CTAGGAGGTCTTACCACGGC+CGG | + | chr7_4:38693602-38693621 | Msa1152780:CDS | 60.0% | |
| !! | ATGAGGGGCGCTTGGAGGCA+GGG | - | chr7_4:38691443-38691462 | None:intergenic | 65.0% |
| !! | AATGAGGGGCGCTTGGAGGC+AGG | - | chr7_4:38691444-38691463 | None:intergenic | 65.0% |
| GATAGGCCCAAGGGGGAGAG+GGG | - | chr7_4:38692439-38692458 | None:intergenic | 65.0% | |
| CTGATAGGCCCAAGGGGGAG+AGG | - | chr7_4:38692441-38692460 | None:intergenic | 65.0% | |
| TCCCCATCCCCTCTCCCCCT+TGG | + | chr7_4:38692429-38692448 | Msa1152780:intron | 70.0% | |
| CCCAAGGGGGAGAGGGGATG+GGG | - | chr7_4:38692433-38692452 | None:intergenic | 70.0% | |
| CCCCATCCCCTCTCCCCCTT+GGG | + | chr7_4:38692430-38692449 | Msa1152780:intron | 70.0% | |
| GCCCAAGGGGGAGAGGGGAT+GGG | - | chr7_4:38692434-38692453 | None:intergenic | 70.0% | |
| GGCCCAAGGGGGAGAGGGGA+TGG | - | chr7_4:38692435-38692454 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 38690633 | 38696054 | 38690633 | ID=Msa1152780;Name=Msa1152780 |
| chr7_4 | mRNA | 38690633 | 38696054 | 38690633 | ID=Msa1152780-mRNA-1;Parent=Msa1152780;Name=Msa1152780-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.90|0.91|1|0.90|0.91|12|419|317 |
| chr7_4 | exon | 38690633 | 38690767 | 38690633 | ID=Msa1152780-mRNA-1:exon:9332;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38692929 | 38693016 | 38692929 | ID=Msa1152780-mRNA-1:exon:9333;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38693220 | 38693305 | 38693220 | ID=Msa1152780-mRNA-1:exon:9334;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38693406 | 38693492 | 38693406 | ID=Msa1152780-mRNA-1:exon:9335;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38693575 | 38693640 | 38693575 | ID=Msa1152780-mRNA-1:exon:9336;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38693728 | 38693811 | 38693728 | ID=Msa1152780-mRNA-1:exon:9337;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38693897 | 38693958 | 38693897 | ID=Msa1152780-mRNA-1:exon:9338;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38694066 | 38694141 | 38694066 | ID=Msa1152780-mRNA-1:exon:9339;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38694705 | 38694786 | 38694705 | ID=Msa1152780-mRNA-1:exon:9340;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38695201 | 38695277 | 38695201 | ID=Msa1152780-mRNA-1:exon:9341;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38695408 | 38695455 | 38695408 | ID=Msa1152780-mRNA-1:exon:9342;Parent=Msa1152780-mRNA-1 |
| chr7_4 | exon | 38695573 | 38696054 | 38695573 | ID=Msa1152780-mRNA-1:exon:9343;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38690633 | 38690767 | 38690633 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38692929 | 38693016 | 38692929 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38693220 | 38693305 | 38693220 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38693406 | 38693492 | 38693406 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38693575 | 38693640 | 38693575 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38693728 | 38693811 | 38693728 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38693897 | 38693958 | 38693897 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38694066 | 38694141 | 38694066 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38694705 | 38694786 | 38694705 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38695201 | 38695277 | 38695201 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38695408 | 38695455 | 38695408 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | CDS | 38695573 | 38695635 | 38695573 | ID=Msa1152780-mRNA-1:cds;Parent=Msa1152780-mRNA-1 |
| chr7_4 | three_prime_UTR | 38695636 | 38696054 | 38695636 | ID=Msa1152780-mRNA-1:three_prime_utr;Parent=Msa1152780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
