Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213620 | XP_013464449.1 | 85.714 | 280 | 15 | 3 | 1 | 259 | 1 | 276 | 4.43e-158 | 450 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213620 | sp|Q9C8L2|FAP3_ARATH | 55.507 | 227 | 81 | 2 | 53 | 259 | 60 | 286 | 1.42e-81 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213620 | A0A072V8X6 | 85.714 | 280 | 15 | 3 | 1 | 259 | 1 | 276 | 2.11e-158 | 450 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051960 | Msa0213620 | -0.842560 | 2.400481e-58 | -8.615850e-47 |
| Msa0057770 | Msa0213620 | 0.801046 | 1.083205e-48 | -8.615850e-47 |
| Msa0089700 | Msa0213620 | 0.817059 | 4.012656e-52 | -8.615850e-47 |
| Msa0093950 | Msa0213620 | 0.840269 | 9.626070e-58 | -8.615850e-47 |
| Msa0094710 | Msa0213620 | -0.813357 | 2.666762e-51 | -8.615850e-47 |
| Msa0101960 | Msa0213620 | -0.837656 | 4.569179e-57 | -8.615850e-47 |
| Msa0120160 | Msa0213620 | 0.802131 | 6.489675e-49 | -8.615850e-47 |
| Msa0138680 | Msa0213620 | 0.805312 | 1.418467e-49 | -8.615850e-47 |
| Msa0162170 | Msa0213620 | 0.832814 | 7.627347e-56 | -8.615850e-47 |
| Msa0167180 | Msa0213620 | 0.800829 | 1.199404e-48 | -8.615850e-47 |
| Msa0168410 | Msa0213620 | 0.813640 | 2.310324e-51 | -8.615850e-47 |
| Msa0168770 | Msa0213620 | 0.804762 | 1.848451e-49 | -8.615850e-47 |
| Msa0187590 | Msa0213620 | 0.827623 | 1.412588e-54 | -8.615850e-47 |
| Msa0213620 | Msa0220400 | 0.832362 | 9.874469e-56 | -8.615850e-47 |
| Msa0213620 | Msa0225190 | 0.803574 | 3.266678e-49 | -8.615850e-47 |
| Msa0213620 | Msa0237690 | 0.805936 | 1.049481e-49 | -8.615850e-47 |
| Msa0213620 | Msa0261660 | 0.801071 | 1.070437e-48 | -8.615850e-47 |
| Msa0213620 | Msa0299530 | 0.839756 | 1.309520e-57 | -8.615850e-47 |
| Msa0213620 | Msa0327990 | 0.801435 | 9.018733e-49 | -8.615850e-47 |
| Msa0213620 | Msa0374300 | 0.814404 | 1.567894e-51 | -8.615850e-47 |
| Msa0213620 | Msa0383870 | 0.831988 | 1.221458e-55 | -8.615850e-47 |
| Msa0213620 | Msa0388080 | 0.854350 | 1.304808e-61 | -8.615850e-47 |
| Msa0213620 | Msa0397420 | 0.821683 | 3.544970e-53 | -8.615850e-47 |
| Msa0213620 | Msa0415160 | 0.802177 | 6.348005e-49 | -8.615850e-47 |
| Msa0213620 | Msa0417790 | 0.801827 | 7.491183e-49 | -8.615850e-47 |
| Msa0213620 | Msa0420810 | 0.836265 | 1.035420e-56 | -8.615850e-47 |
| Msa0213620 | Msa0428200 | -0.809247 | 2.079421e-50 | -8.615850e-47 |
| Msa0213620 | Msa0444770 | 0.800890 | 1.165446e-48 | -8.615850e-47 |
| Msa0213620 | Msa0467070 | 0.806586 | 7.654904e-50 | -8.615850e-47 |
| Msa0213620 | Msa0474630 | 0.816936 | 4.275761e-52 | -8.615850e-47 |
| Msa0213620 | Msa0478740 | 0.803397 | 3.554618e-49 | -8.615850e-47 |
| Msa0213620 | Msa0480090 | 0.859172 | 4.972087e-63 | -8.615850e-47 |
| Msa0213620 | Msa0492920 | 0.820550 | 6.463766e-53 | -8.615850e-47 |
| Msa0213620 | Msa0500700 | 0.816253 | 6.082772e-52 | -8.615850e-47 |
| Msa0213620 | Msa0515440 | 0.804344 | 2.260238e-49 | -8.615850e-47 |
| Msa0213620 | Msa0519100 | 0.814460 | 1.523295e-51 | -8.615850e-47 |
| Msa0213620 | Msa0548650 | 0.836548 | 8.773605e-57 | -8.615850e-47 |
| Msa0213620 | Msa0558650 | -0.801679 | 8.036520e-49 | -8.615850e-47 |
| Msa0213620 | Msa0559650 | 0.815135 | 1.079381e-51 | -8.615850e-47 |
| Msa0213620 | Msa0567430 | -0.816121 | 6.510007e-52 | -8.615850e-47 |
| Msa0213620 | Msa0576020 | 0.804910 | 1.721435e-49 | -8.615850e-47 |
| Msa0213620 | Msa0613420 | -0.822558 | 2.221447e-53 | -8.615850e-47 |
| Msa0213620 | Msa0637930 | 0.834260 | 3.321633e-56 | -8.615850e-47 |
| Msa0213620 | Msa0649160 | 0.833708 | 4.566640e-56 | -8.615850e-47 |
| Msa0213620 | Msa0651000 | 0.816226 | 6.168158e-52 | -8.615850e-47 |
| Msa0213620 | Msa0654410 | 0.821667 | 3.573608e-53 | -8.615850e-47 |
| Msa0213620 | Msa0654490 | 0.822344 | 2.490374e-53 | -8.615850e-47 |
| Msa0213620 | Msa0781330 | 0.829905 | 3.962689e-55 | -8.615850e-47 |
| Msa0213620 | Msa0882480 | 0.806089 | 9.741797e-50 | -8.615850e-47 |
| Msa0213620 | Msa0919120 | 0.809773 | 1.603095e-50 | -8.615850e-47 |
| Msa0213620 | Msa0966580 | -0.803219 | 3.869805e-49 | -8.615850e-47 |
| Msa0213620 | Msa0968470 | 0.831249 | 1.858107e-55 | -8.615850e-47 |
| Msa0213620 | Msa1011250 | -0.815234 | 1.026484e-51 | -8.615850e-47 |
| Msa0213620 | Msa1031460 | -0.807076 | 6.031728e-50 | -8.615850e-47 |
| Msa0213620 | Msa1079720 | 0.827029 | 1.960323e-54 | -8.615850e-47 |
| Msa0213620 | Msa1080610 | 0.815735 | 7.939586e-52 | -8.615850e-47 |
| Msa0213620 | Msa1080680 | 0.814329 | 1.628850e-51 | -8.615850e-47 |
| Msa0213620 | Msa1124530 | 0.809604 | 1.742748e-50 | -8.615850e-47 |
| Msa0213620 | Msa1126320 | 0.806730 | 7.136590e-50 | -8.615850e-47 |
| Msa0213620 | Msa1129300 | 0.823890 | 1.085343e-53 | -8.615850e-47 |
| Msa0213620 | Msa1152780 | 0.880297 | 6.164084e-70 | -8.615850e-47 |
| Msa0213620 | Msa1159160 | -0.804210 | 2.409659e-49 | -8.615850e-47 |
| Msa0213620 | Msa1163130 | 0.811909 | 5.529381e-51 | -8.615850e-47 |
| Msa0213620 | Msa1164720 | 0.806829 | 6.801433e-50 | -8.615850e-47 |
| Msa0213620 | Msa1167150 | 0.818837 | 1.591476e-52 | -8.615850e-47 |
| Msa0213620 | Msa1190510 | 0.802605 | 5.182699e-49 | -8.615850e-47 |
| Msa0213620 | Msa1197740 | 0.819375 | 1.200691e-52 | -8.615850e-47 |
| Msa0213620 | Msa1208450 | 0.831190 | 1.921411e-55 | -8.615850e-47 |
| Msa0213620 | Msa1208990 | -0.812098 | 5.029289e-51 | -8.615850e-47 |
| Msa0213620 | Msa1211060 | 0.800169 | 1.635240e-48 | -8.615850e-47 |
| Msa0213620 | Msa1251440 | 0.826005 | 3.439086e-54 | -8.615850e-47 |
| Msa0213620 | Msa1298390 | 0.831979 | 1.228039e-55 | -8.615850e-47 |
| Msa0213620 | Msa1313700 | -0.800299 | 1.538359e-48 | -8.615850e-47 |
| Msa0213620 | Msa1325560 | 0.833079 | 6.553356e-56 | -8.615850e-47 |
| Msa0213620 | Msa1375610 | 0.824068 | 9.860717e-54 | -8.615850e-47 |
| Msa0213620 | Msa1375970 | 0.811574 | 6.539887e-51 | -8.615850e-47 |
| Msa0213620 | Msa1376550 | 0.801488 | 8.794869e-49 | -8.615850e-47 |
| Msa0213620 | Msa1379020 | -0.803657 | 3.140558e-49 | -8.615850e-47 |
| Msa0213620 | Msa1407880 | -0.807981 | 3.874734e-50 | -8.615850e-47 |
| Msa0213620 | Msa1444770 | 0.829625 | 4.636744e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213620 | MtrunA17_Chr2g0313901 | 85.714 | 280 | 15 | 3 | 1 | 259 | 1 | 276 | 4.07e-162 | 450 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213620 | AT1G53520.1 | 55.507 | 227 | 81 | 2 | 53 | 259 | 60 | 286 | 1.44e-82 | 249 |
Find 51 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTGATGGTAAAACTTTC+TGG | 0.189488 | 2_1:+56740509 | Msa0213620:CDS |
| AAAGAGTGAATATAGTTTAA+TGG | 0.237298 | 2_1:-56737386 | None:intergenic |
| AAATGAAAGTTCCTTTCTTA+AGG | 0.288163 | 2_1:-56740630 | None:intergenic |
| GGCGTCAAGGTCTATGCTTC+TGG | 0.323231 | 2_1:+56740055 | Msa0213620:CDS |
| AAATTAACTTACAAGCAATT+TGG | 0.330918 | 2_1:-56740674 | None:intergenic |
| TCAGACATCTTTGAGTTTCC+CGG | 0.335505 | 2_1:+56739323 | Msa0213620:CDS |
| AATGAAAGTTCCTTTCTTAA+GGG | 0.338163 | 2_1:-56740629 | None:intergenic |
| TCAGATTCATTAACATTGTT+TGG | 0.344207 | 2_1:+56739351 | Msa0213620:CDS |
| TGAAATTTCACATTTGTTGC+TGG | 0.346422 | 2_1:-56739303 | None:intergenic |
| TTGAGAAACTGAAGCTTTCA+AGG | 0.381196 | 2_1:-56740871 | None:intergenic |
| TCATTAACATTGTTTGGAAC+TGG | 0.391138 | 2_1:+56739357 | Msa0213620:CDS |
| AAGCAGCATGTGGAAAGAAA+TGG | 0.423914 | 2_1:-56737469 | None:intergenic |
| GCTTTCAAGGAGGGAGATAC+AGG | 0.424288 | 2_1:-56740858 | None:intergenic |
| TCATCTTCATCTTCATCTGC+TGG | 0.442683 | 2_1:+56737491 | Msa0213620:CDS |
| TGGTGATATAGCATCACTTA+AGG | 0.445674 | 2_1:-56740536 | None:intergenic |
| AGCAGCATGTGGAAAGAAAT+GGG | 0.446801 | 2_1:-56737468 | None:intergenic |
| GCAGTTTCATCTGCAGTTGT+TGG | 0.451903 | 2_1:-56740571 | None:intergenic |
| ATGAAAGTTCCTTTCTTAAG+GGG | 0.452657 | 2_1:-56740628 | None:intergenic |
| CAGGTTTCTGTCTCATCAGA+AGG | 0.453756 | 2_1:+56740756 | Msa0213620:intron |
| TTGAGAGAGAAATGCAGAGA+GGG | 0.456436 | 2_1:-56737425 | None:intergenic |
| GTTCTTGTAAGAGATGTTGA+TGG | 0.475074 | 2_1:+56740496 | Msa0213620:intron |
| TAACTTACAAGCAATTTGGT+AGG | 0.489317 | 2_1:-56740670 | None:intergenic |
| AACTTACAAGCAATTTGGTA+GGG | 0.489717 | 2_1:-56740669 | None:intergenic |
| CGCGGATGCTACAATTGAAT+CGG | 0.497455 | 2_1:+56740791 | Msa0213620:CDS |
| TCAACTCATTTACGATAGAC+TGG | 0.499366 | 2_1:-56740090 | None:intergenic |
| AGAGAGAAATGCAGAGAGGG+GGG | 0.500233 | 2_1:-56737422 | None:intergenic |
| CAGTCGAAAGATGTTATTCA+AGG | 0.515053 | 2_1:+56740127 | Msa0213620:CDS |
| CAGACATCTTTGAGTTTCCC+GGG | 0.519909 | 2_1:+56739324 | Msa0213620:CDS |
| TGTTGATGGTAAAACTTTCT+GGG | 0.525779 | 2_1:+56740510 | Msa0213620:CDS |
| GAGAGAGAAATGCAGAGAGG+GGG | 0.528252 | 2_1:-56737423 | None:intergenic |
| ATTGTAGCATCCGCGGTAGA+CGG | 0.529982 | 2_1:-56740783 | None:intergenic |
| GAAACTGAAGCTTTCAAGGA+GGG | 0.535143 | 2_1:-56740867 | None:intergenic |
| TCGTAAATGAGTTGAATGCT+TGG | 0.553867 | 2_1:+56740098 | Msa0213620:CDS |
| TGAGAGAGAAATGCAGAGAG+GGG | 0.557502 | 2_1:-56737424 | None:intergenic |
| ACTTACAAGCAATTTGGTAG+GGG | 0.564244 | 2_1:-56740668 | None:intergenic |
| AGGTTTCTGTCTCATCAGAA+GGG | 0.567064 | 2_1:+56740757 | Msa0213620:intron |
| GTTAATGAATCTGAGCAACC+CGG | 0.573404 | 2_1:-56739342 | None:intergenic |
| ATGAGTTGAATGCTTGGAAA+GGG | 0.574681 | 2_1:+56740104 | Msa0213620:CDS |
| TGAAAGTTCCTTTCTTAAGG+GGG | 0.594314 | 2_1:-56740627 | None:intergenic |
| AATGAGTTGAATGCTTGGAA+AGG | 0.600633 | 2_1:+56740103 | Msa0213620:CDS |
| GGCGATCTTGAAAGACGCTA+CGG | 0.603802 | 2_1:-56740606 | None:intergenic |
| TGCAAATGCTGAATACATTG+AGG | 0.620913 | 2_1:+56739278 | Msa0213620:CDS |
| GTTGAGAGAGAAATGCAGAG+AGG | 0.624225 | 2_1:-56737426 | None:intergenic |
| CGATTCAATTGTAGCATCCG+CGG | 0.634948 | 2_1:-56740790 | None:intergenic |
| AGAAGGGATTCCGTCTACCG+CGG | 0.641655 | 2_1:+56740773 | Msa0213620:CDS |
| AGTCGAAAGATGTTATTCAA+GGG | 0.643960 | 2_1:+56740128 | Msa0213620:CDS |
| TTAATGAATCTGAGCAACCC+GGG | 0.660829 | 2_1:-56739341 | None:intergenic |
| CAGCATGTGGAAAGAAATGG+GGG | 0.663326 | 2_1:-56737466 | None:intergenic |
| GATGAAGATGAAGCAGCATG+TGG | 0.666156 | 2_1:-56737479 | None:intergenic |
| AGAAACTGAAGCTTTCAAGG+AGG | 0.685928 | 2_1:-56740868 | None:intergenic |
| GCAGCATGTGGAAAGAAATG+GGG | 0.707094 | 2_1:-56737467 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATGTATAGATTTATA+TGG | - | chr2_1:56738207-56738226 | None:intergenic | 10.0% |
| !!! | TGTTTTTAAAAAGAAATAAA+TGG | - | chr2_1:56740200-56740219 | None:intergenic | 10.0% |
| !! | TCTATAAAAACTAATTAAAC+AGG | - | chr2_1:56737731-56737750 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTTTACAAAGATA+AGG | - | chr2_1:56738505-56738524 | None:intergenic | 15.0% |
| !! | AAAACAAAAAATTTCTTCAA+CGG | + | chr2_1:56738514-56738533 | Msa0213620:intron | 15.0% |
| !! | AAATATCTAATTCTACAAAA+TGG | - | chr2_1:56739794-56739813 | None:intergenic | 15.0% |
| !! | TGAAAACATTATGTTTATAA+TGG | + | chr2_1:56739868-56739887 | Msa0213620:intron | 15.0% |
| !! | ACCAAAAAAAAAAAAAATAC+CGG | - | chr2_1:56740375-56740394 | None:intergenic | 15.0% |
| !! | AAAGAGTGAATATAGTTTAA+TGG | - | chr2_1:56737389-56737408 | None:intergenic | 20.0% |
| !! | ATTCATTTAATAATGCAGAA+CGG | + | chr2_1:56737562-56737581 | Msa0213620:intron | 20.0% |
| !! | TTGATGAATGCATAATATAT+TGG | + | chr2_1:56737928-56737947 | Msa0213620:intron | 20.0% |
| !! | TGCTTAACTATATTCAAAAT+AGG | + | chr2_1:56738164-56738183 | Msa0213620:intron | 20.0% |
| !! | GCTTAACTATATTCAAAATA+GGG | + | chr2_1:56738165-56738184 | Msa0213620:intron | 20.0% |
| !!! | CAATGTTTTAAAAACTGATT+AGG | - | chr2_1:56739077-56739096 | None:intergenic | 20.0% |
| !!! | CTAATCAGTTTTTAAAACAT+TGG | + | chr2_1:56739075-56739094 | Msa0213620:intron | 20.0% |
| !!! | TTACATGACAACATTTTAAA+TGG | + | chr2_1:56739427-56739446 | Msa0213620:intron | 20.0% |
| !! | ATAATAAGCTGTATAACTAT+AGG | + | chr2_1:56739678-56739697 | Msa0213620:intron | 20.0% |
| !!! | GAAAAAGTTTTTGCTATTAT+TGG | + | chr2_1:56740034-56740053 | Msa0213620:CDS | 20.0% |
| !!! | ACCGGTATTTTTTTTTTTTT+TGG | + | chr2_1:56740371-56740390 | Msa0213620:intron | 20.0% |
| !! | AAATTAACTTACAAGCAATT+TGG | - | chr2_1:56740677-56740696 | None:intergenic | 20.0% |
| !!! | AAACTAAATTTTGTGATTTC+AGG | + | chr2_1:56740737-56740756 | Msa0213620:intron | 20.0% |
| !! | GAGAATAAACTTTTGCATAT+TGG | + | chr2_1:56737749-56737768 | Msa0213620:intron | 25.0% |
| !! | TAAACTTTTGCATATTGGAT+TGG | + | chr2_1:56737754-56737773 | Msa0213620:intron | 25.0% |
| !!! | AAAATATTCGCCTTTTTTGA+AGG | + | chr2_1:56737829-56737848 | Msa0213620:intron | 25.0% |
| !!! | TCACTTTCTCTTTTACTTTT+TGG | - | chr2_1:56737855-56737874 | None:intergenic | 25.0% |
| !! | AAACTTTAGGAACTAAAAAG+TGG | - | chr2_1:56738244-56738263 | None:intergenic | 25.0% |
| ! | ATTTGTAAGAACTGAAAAGT+AGG | + | chr2_1:56738318-56738337 | Msa0213620:intron | 25.0% |
| ! | TTTGTAAGAACTGAAAAGTA+GGG | + | chr2_1:56738319-56738338 | Msa0213620:intron | 25.0% |
| !!! | TGAGGTATTATTATTTTGCA+GGG | - | chr2_1:56738401-56738420 | None:intergenic | 25.0% |
| !!! | ATGAGGTATTATTATTTTGC+AGG | - | chr2_1:56738402-56738421 | None:intergenic | 25.0% |
| ! | TAGCTAATAGTTGTAAAGAT+TGG | + | chr2_1:56738467-56738486 | Msa0213620:intron | 25.0% |
| ! | AGCTAATAGTTGTAAAGATT+GGG | + | chr2_1:56738468-56738487 | Msa0213620:intron | 25.0% |
| !!! | ACATATTTTTTTGGCGAATA+TGG | + | chr2_1:56738542-56738561 | Msa0213620:intron | 25.0% |
| !! | GCTATAGATATTTTATGTTG+AGG | - | chr2_1:56738583-56738602 | None:intergenic | 25.0% |
| ! | TAAAACAAGTAGAAAAAGTG+AGG | + | chr2_1:56738763-56738782 | Msa0213620:intron | 25.0% |
| ! | AAGACAGACTGAAAAAAAAA+AGG | - | chr2_1:56739200-56739219 | None:intergenic | 25.0% |
| !!! | GATACAAATTGACTTGTATT+TGG | + | chr2_1:56739233-56739252 | Msa0213620:intron | 25.0% |
| ! | CTTGTATTTGGTTATATGAT+TGG | + | chr2_1:56739245-56739264 | Msa0213620:intron | 25.0% |
| ! | TCAGATTCATTAACATTGTT+TGG | + | chr2_1:56739351-56739370 | Msa0213620:CDS | 25.0% |
| ! | TATAATGTCGCAATTTAATG+TGG | + | chr2_1:56739482-56739501 | Msa0213620:intron | 25.0% |
| !! | ATTCACAACAAGATTTTGAA+AGG | - | chr2_1:56739626-56739645 | None:intergenic | 25.0% |
| ! | TAGTTATACAGCTTATTATC+AGG | - | chr2_1:56739677-56739696 | None:intergenic | 25.0% |
| ! | GGAAAAAGAATGTTGAAAAA+TGG | + | chr2_1:56739718-56739737 | Msa0213620:intron | 25.0% |
| !! | AATGGATTCATACATATCTA+AGG | + | chr2_1:56739736-56739755 | Msa0213620:intron | 25.0% |
| !! | TTGATAATAACACCTATTTC+AGG | + | chr2_1:56740004-56740023 | Msa0213620:intron | 25.0% |
| ! | GAAATTGTTACATTGGAAAA+TGG | - | chr2_1:56740173-56740192 | None:intergenic | 25.0% |
| ! | TGGATATGAAATTGTTACAT+TGG | - | chr2_1:56740180-56740199 | None:intergenic | 25.0% |
| ! | AATTTGCAATAATTTCTCGA+GGG | - | chr2_1:56740476-56740495 | None:intergenic | 25.0% |
| ! | AATGAAAGTTCCTTTCTTAA+GGG | - | chr2_1:56740632-56740651 | None:intergenic | 25.0% |
| ! | AAATGAAAGTTCCTTTCTTA+AGG | - | chr2_1:56740633-56740652 | None:intergenic | 25.0% |
| !!! | GAACTTTCATTTTTTTGACT+TGG | + | chr2_1:56740641-56740660 | Msa0213620:CDS | 25.0% |
| GTAGAAGATGAAAAACATAG+TGG | - | chr2_1:56737335-56737354 | None:intergenic | 30.0% | |
| !! | TACTTTTTGGCCTTCAAAAA+AGG | - | chr2_1:56737842-56737861 | None:intergenic | 30.0% |
| AGTGAAAAGTTTGAAGATTC+TGG | + | chr2_1:56737870-56737889 | Msa0213620:intron | 30.0% | |
| CTTGTAGATGTGTAAACTTT+AGG | - | chr2_1:56738257-56738276 | None:intergenic | 30.0% | |
| !!! | ACATGCTTTCAGTGTTTTTT+GGG | - | chr2_1:56738289-56738308 | None:intergenic | 30.0% |
| !!! | TACATGCTTTCAGTGTTTTT+TGG | - | chr2_1:56738290-56738309 | None:intergenic | 30.0% |
| ! | AATTTGAGATGACTGATTGT+AGG | + | chr2_1:56738358-56738377 | Msa0213620:intron | 30.0% |
| ATGTAACTACTTCACAGAAT+AGG | - | chr2_1:56738443-56738462 | None:intergenic | 30.0% | |
| GTAAAGATTGGGAAAGTTAA+AGG | + | chr2_1:56738479-56738498 | Msa0213620:intron | 30.0% | |
| !!! | ACGGATGCTACATATTTTTT+TGG | + | chr2_1:56738533-56738552 | Msa0213620:intron | 30.0% |
| TAGAAAAAGTGAGGTATAGT+GGG | + | chr2_1:56738772-56738791 | Msa0213620:intron | 30.0% | |
| ATTCTCTTTAACATAGACAG+AGG | + | chr2_1:56738895-56738914 | Msa0213620:intron | 30.0% | |
| TTCTCTTTAACATAGACAGA+GGG | + | chr2_1:56738896-56738915 | Msa0213620:intron | 30.0% | |
| AGGGGATAATAGCAAATAAT+AGG | + | chr2_1:56738915-56738934 | Msa0213620:intron | 30.0% | |
| AAATAATAGGTTCACTCTCA+AGG | + | chr2_1:56738928-56738947 | Msa0213620:intron | 30.0% | |
| AGGTGTTTGCAAAATGTTAA+TGG | + | chr2_1:56738948-56738967 | Msa0213620:intron | 30.0% | |
| !! | ATGTTAATGGATTTCGTCTA+TGG | + | chr2_1:56738961-56738980 | Msa0213620:intron | 30.0% |
| TGATTTAAACAACTCAAACC+AGG | - | chr2_1:56739017-56739036 | None:intergenic | 30.0% | |
| ! | TGAAATTTCACATTTGTTGC+TGG | - | chr2_1:56739306-56739325 | None:intergenic | 30.0% |
| ! | TCATTAACATTGTTTGGAAC+TGG | + | chr2_1:56739357-56739376 | Msa0213620:CDS | 30.0% |
| TATCAATCAATCTAGAGACA+AGG | - | chr2_1:56739551-56739570 | None:intergenic | 30.0% | |
| ATAGGCAAAGTGATTCTATT+TGG | + | chr2_1:56739696-56739715 | Msa0213620:intron | 30.0% | |
| TAGGCAAAGTGATTCTATTT+GGG | + | chr2_1:56739697-56739716 | Msa0213620:intron | 30.0% | |
| ! | ATATCTAAGGTTAAACTTCG+AGG | + | chr2_1:56739749-56739768 | Msa0213620:intron | 30.0% |
| GCAAAAAAAATCCATAGGTT+CGG | - | chr2_1:56739903-56739922 | None:intergenic | 30.0% | |
| TACTAGACGGAAATAATTAC+GGG | - | chr2_1:56739925-56739944 | None:intergenic | 30.0% | |
| CTACTAGACGGAAATAATTA+CGG | - | chr2_1:56739926-56739945 | None:intergenic | 30.0% | |
| ACCTACTAAATTCTACTAGA+CGG | - | chr2_1:56739938-56739957 | None:intergenic | 30.0% | |
| ! | TTTTCTCTGTATCCTGAAAT+AGG | - | chr2_1:56740019-56740038 | None:intergenic | 30.0% |
| AGTCGAAAGATGTTATTCAA+GGG | + | chr2_1:56740128-56740147 | Msa0213620:CDS | 30.0% | |
| TAGTTCCATGATACCTAATT+TGG | - | chr2_1:56740309-56740328 | None:intergenic | 30.0% | |
| !!! | TTTTTGGTTACAACTATGAC+CGG | + | chr2_1:56740387-56740406 | Msa0213620:intron | 30.0% |
| AAATCAGTGTTGTCAAATAC+CGG | - | chr2_1:56740409-56740428 | None:intergenic | 30.0% | |
| ATTTGCAATAATTTCTCGAG+GGG | - | chr2_1:56740475-56740494 | None:intergenic | 30.0% | |
| CAATTTGCAATAATTTCTCG+AGG | - | chr2_1:56740477-56740496 | None:intergenic | 30.0% | |
| !! | ATGTTGATGGTAAAACTTTC+TGG | + | chr2_1:56740509-56740528 | Msa0213620:CDS | 30.0% |
| !! | TGTTGATGGTAAAACTTTCT+GGG | + | chr2_1:56740510-56740529 | Msa0213620:CDS | 30.0% |
| ATGAAAGTTCCTTTCTTAAG+GGG | - | chr2_1:56740631-56740650 | None:intergenic | 30.0% | |
| AACTTACAAGCAATTTGGTA+GGG | - | chr2_1:56740672-56740691 | None:intergenic | 30.0% | |
| TAACTTACAAGCAATTTGGT+AGG | - | chr2_1:56740673-56740692 | None:intergenic | 30.0% | |
| !! | TTTTGCTATCTTGCGAAAAA+CGG | + | chr2_1:56740711-56740730 | Msa0213620:intron | 30.0% |
| ! | GCTCTTTTTGATGTATTTCT+CGG | + | chr2_1:56740828-56740847 | Msa0213620:CDS | 30.0% |
| !! | ACTTTTGCATATTGGATTGG+AGG | + | chr2_1:56737757-56737776 | Msa0213620:intron | 35.0% |
| !! | CTTTTGCATATTGGATTGGA+GGG | + | chr2_1:56737758-56737777 | Msa0213620:intron | 35.0% |
| AGTGTTGCAAATCCAACTAA+TGG | - | chr2_1:56737964-56737983 | None:intergenic | 35.0% | |
| GGAACTAAAAAGTGGATACA+AGG | - | chr2_1:56738236-56738255 | None:intergenic | 35.0% | |
| !!! | CATGCTTTCAGTGTTTTTTG+GGG | - | chr2_1:56738288-56738307 | None:intergenic | 35.0% |
| CACAAATAAGTAGCACTATG+AGG | - | chr2_1:56738419-56738438 | None:intergenic | 35.0% | |
| !! | CTCATAGTGCTACTTATTTG+TGG | + | chr2_1:56738417-56738436 | Msa0213620:intron | 35.0% |
| GTAGAAAAAGTGAGGTATAG+TGG | + | chr2_1:56738771-56738790 | Msa0213620:intron | 35.0% | |
| AGAAAAAGTGAGGTATAGTG+GGG | + | chr2_1:56738773-56738792 | Msa0213620:intron | 35.0% | |
| TGACTGTTAGGCATGAAATT+TGG | + | chr2_1:56738801-56738820 | Msa0213620:intron | 35.0% | |
| TCTCTTTAACATAGACAGAG+GGG | + | chr2_1:56738897-56738916 | Msa0213620:intron | 35.0% | |
| ! | AATGGATTTCGTCTATGGTT+AGG | + | chr2_1:56738966-56738985 | Msa0213620:intron | 35.0% |
| AAATCAGTTGAACCATGACT+CGG | + | chr2_1:56739031-56739050 | Msa0213620:intron | 35.0% | |
| TGCAAATGCTGAATACATTG+AGG | + | chr2_1:56739278-56739297 | Msa0213620:CDS | 35.0% | |
| TGACGATGAACTTACTTTCA+TGG | + | chr2_1:56739571-56739590 | Msa0213620:intron | 35.0% | |
| TACGGGCAAAAAAAATCCAT+AGG | - | chr2_1:56739908-56739927 | None:intergenic | 35.0% | |
| TCCGTCTAGTAGAATTTAGT+AGG | + | chr2_1:56739934-56739953 | Msa0213620:intron | 35.0% | |
| !!! | TTTTGCTATTATTGGCGTCA+AGG | + | chr2_1:56740042-56740061 | Msa0213620:CDS | 35.0% |
| TCAACTCATTTACGATAGAC+TGG | - | chr2_1:56740093-56740112 | None:intergenic | 35.0% | |
| ! | TCGTAAATGAGTTGAATGCT+TGG | + | chr2_1:56740098-56740117 | Msa0213620:CDS | 35.0% |
| ! | AATGAGTTGAATGCTTGGAA+AGG | + | chr2_1:56740103-56740122 | Msa0213620:CDS | 35.0% |
| ! | ATGAGTTGAATGCTTGGAAA+GGG | + | chr2_1:56740104-56740123 | Msa0213620:CDS | 35.0% |
| CAGTCGAAAGATGTTATTCA+AGG | + | chr2_1:56740127-56740146 | Msa0213620:CDS | 35.0% | |
| ! | TTGGAAAATGGTCTTGAACA+AGG | - | chr2_1:56740161-56740180 | None:intergenic | 35.0% |
| TCACAACTTCGTACCAAATT+AGG | + | chr2_1:56740293-56740312 | Msa0213620:intron | 35.0% | |
| TCGTACCAAATTAGGTATCA+TGG | + | chr2_1:56740301-56740320 | Msa0213620:intron | 35.0% | |
| GTTCTTGTAAGAGATGTTGA+TGG | + | chr2_1:56740496-56740515 | Msa0213620:intron | 35.0% | |
| TGGTGATATAGCATCACTTA+AGG | - | chr2_1:56740539-56740558 | None:intergenic | 35.0% | |
| !!! | GTTGTTGGTTTTGCAATTCT+TGG | - | chr2_1:56740559-56740578 | None:intergenic | 35.0% |
| TGAAAGTTCCTTTCTTAAGG+GGG | - | chr2_1:56740630-56740649 | None:intergenic | 35.0% | |
| ACTTACAAGCAATTTGGTAG+GGG | - | chr2_1:56740671-56740690 | None:intergenic | 35.0% | |
| GCAAGATAGCAAAAGTGAAA+AGG | - | chr2_1:56740705-56740724 | None:intergenic | 35.0% | |
| TTGAGAAACTGAAGCTTTCA+AGG | - | chr2_1:56740874-56740893 | None:intergenic | 35.0% | |
| TTGAGAGAGAAATGCAGAGA+GGG | - | chr2_1:56737428-56737447 | None:intergenic | 40.0% | |
| AGCAGCATGTGGAAAGAAAT+GGG | - | chr2_1:56737471-56737490 | None:intergenic | 40.0% | |
| AAGCAGCATGTGGAAAGAAA+TGG | - | chr2_1:56737472-56737491 | None:intergenic | 40.0% | |
| TCATCTTCATCTTCATCTGC+TGG | + | chr2_1:56737491-56737510 | Msa0213620:CDS | 40.0% | |
| GGTGAATTGTCTCCATTAGT+TGG | + | chr2_1:56737949-56737968 | Msa0213620:intron | 40.0% | |
| TGGATTTGCAACACTGAACA+AGG | + | chr2_1:56737969-56737988 | Msa0213620:intron | 40.0% | |
| TTGTGTGTGTGAGTTTACGA+TGG | - | chr2_1:56738047-56738066 | None:intergenic | 40.0% | |
| TTAGTCCAGCCTAGCAATTT+CGG | + | chr2_1:56738097-56738116 | Msa0213620:intron | 40.0% | |
| GCAAAAATGCCGAAATTGCT+AGG | - | chr2_1:56738109-56738128 | None:intergenic | 40.0% | |
| AGAACTGAAAAGTAGGGACA+AGG | + | chr2_1:56738325-56738344 | Msa0213620:intron | 40.0% | |
| TCGTCTATGGTTAGGTTAGT+TGG | + | chr2_1:56738974-56738993 | Msa0213620:intron | 40.0% | |
| !! | TAGGTTAGTTGGTTTGACCT+TGG | + | chr2_1:56738985-56739004 | Msa0213620:intron | 40.0% |
| AACTGATTAGGCCATCAAAC+TGG | - | chr2_1:56739065-56739084 | None:intergenic | 40.0% | |
| GAGATAATCATCTAGCGTTG+AGG | - | chr2_1:56739101-56739120 | None:intergenic | 40.0% | |
| TCGTATGCTAAGCTGTAGAT+AGG | + | chr2_1:56739119-56739138 | Msa0213620:intron | 40.0% | |
| ! | TCAGACATCTTTGAGTTTCC+CGG | + | chr2_1:56739323-56739342 | Msa0213620:CDS | 40.0% |
| TTAATGAATCTGAGCAACCC+GGG | - | chr2_1:56739344-56739363 | None:intergenic | 40.0% | |
| GTTAATGAATCTGAGCAACC+CGG | - | chr2_1:56739345-56739364 | None:intergenic | 40.0% | |
| !!! | TACGCTGAGATCACTGATTT+TGG | + | chr2_1:56739506-56739525 | Msa0213620:intron | 40.0% |
| GGTACGAAGTTGTGAAATAG+CGG | - | chr2_1:56740288-56740307 | None:intergenic | 40.0% | |
| AGGTTTCTGTCTCATCAGAA+GGG | + | chr2_1:56740757-56740776 | Msa0213620:intron | 40.0% | |
| GAAACTGAAGCTTTCAAGGA+GGG | - | chr2_1:56740870-56740889 | None:intergenic | 40.0% | |
| AGAAACTGAAGCTTTCAAGG+AGG | - | chr2_1:56740871-56740890 | None:intergenic | 40.0% | |
| TGAGAGAGAAATGCAGAGAG+GGG | - | chr2_1:56737427-56737446 | None:intergenic | 45.0% | |
| GTTGAGAGAGAAATGCAGAG+AGG | - | chr2_1:56737429-56737448 | None:intergenic | 45.0% | |
| !!! | GAAATGGGGGTGTCTTTTAG+AGG | - | chr2_1:56737456-56737475 | None:intergenic | 45.0% |
| CAGCATGTGGAAAGAAATGG+GGG | - | chr2_1:56737469-56737488 | None:intergenic | 45.0% | |
| GCAGCATGTGGAAAGAAATG+GGG | - | chr2_1:56737470-56737489 | None:intergenic | 45.0% | |
| GATGAAGATGAAGCAGCATG+TGG | - | chr2_1:56737482-56737501 | None:intergenic | 45.0% | |
| ! | ATTGGATTGGAGGGCTAACA+TGG | + | chr2_1:56737767-56737786 | Msa0213620:intron | 45.0% |
| GAGGGCTAACATGGTTAGAT+TGG | + | chr2_1:56737776-56737795 | Msa0213620:intron | 45.0% | |
| TGCAACACTGAACAAGGTCA+AGG | + | chr2_1:56737975-56737994 | Msa0213620:intron | 45.0% | |
| CGTAAACTCACACACACAAG+TGG | + | chr2_1:56738048-56738067 | Msa0213620:intron | 45.0% | |
| AAACTCACACACACAAGTGG+AGG | + | chr2_1:56738051-56738070 | Msa0213620:intron | 45.0% | |
| AAATGCCGAAATTGCTAGGC+TGG | - | chr2_1:56738105-56738124 | None:intergenic | 45.0% | |
| ! | GCATTTTTGCCAGTTGAGCT+AGG | + | chr2_1:56738119-56738138 | Msa0213620:intron | 45.0% |
| AGTGGGGATATCTGACTGTT+AGG | + | chr2_1:56738789-56738808 | Msa0213620:intron | 45.0% | |
| CGGAGATATTGCCAGTTTGA+TGG | + | chr2_1:56739051-56739070 | Msa0213620:intron | 45.0% | |
| ! | CAGACATCTTTGAGTTTCCC+GGG | + | chr2_1:56739324-56739343 | Msa0213620:CDS | 45.0% |
| GGTATTGTATGCCGAACCTA+TGG | + | chr2_1:56739889-56739908 | Msa0213620:intron | 45.0% | |
| GCAGTTTCATCTGCAGTTGT+TGG | - | chr2_1:56740574-56740593 | None:intergenic | 45.0% | |
| CAGGTTTCTGTCTCATCAGA+AGG | + | chr2_1:56740756-56740775 | Msa0213620:intron | 45.0% | |
| CGATTCAATTGTAGCATCCG+CGG | - | chr2_1:56740793-56740812 | None:intergenic | 45.0% | |
| CGCGGATGCTACAATTGAAT+CGG | + | chr2_1:56740791-56740810 | Msa0213620:CDS | 45.0% | |
| !! | ATAATTTATAAATAAATGAT+CGG | - | chr2_1:56739169-56739188 | None:intergenic | 5.0% |
| AGAGAGAAATGCAGAGAGGG+GGG | - | chr2_1:56737425-56737444 | None:intergenic | 50.0% | |
| GAGAGAGAAATGCAGAGAGG+GGG | - | chr2_1:56737426-56737445 | None:intergenic | 50.0% | |
| GAGGAGCTGGGTTTGAATCT+CGG | + | chr2_1:56738070-56738089 | Msa0213620:intron | 50.0% | |
| TCCACAAGTCCTAGCTCAAC+TGG | - | chr2_1:56738131-56738150 | None:intergenic | 50.0% | |
| GTTTGACCTTGGTTTCGTCC+TGG | + | chr2_1:56738996-56739015 | Msa0213620:intron | 50.0% | |
| CTCAAACCAGGACGAAACCA+AGG | - | chr2_1:56739005-56739024 | None:intergenic | 50.0% | |
| CTGGCAATATCTCCGAGTCA+TGG | - | chr2_1:56739046-56739065 | None:intergenic | 50.0% | |
| CGCTATAGCGTTGCTATGAC+CGG | + | chr2_1:56740353-56740372 | Msa0213620:intron | 50.0% | |
| GGCGATCTTGAAAGACGCTA+CGG | - | chr2_1:56740609-56740628 | None:intergenic | 50.0% | |
| CAAGATCGCCCCCTTAAGAA+AGG | + | chr2_1:56740619-56740638 | Msa0213620:CDS | 50.0% | |
| ATTGTAGCATCCGCGGTAGA+CGG | - | chr2_1:56740786-56740805 | None:intergenic | 50.0% | |
| GCTTTCAAGGAGGGAGATAC+AGG | - | chr2_1:56740861-56740880 | None:intergenic | 50.0% | |
| ACACACACAAGTGGAGGAGC+TGG | + | chr2_1:56738057-56738076 | Msa0213620:intron | 55.0% | |
| CACACACAAGTGGAGGAGCT+GGG | + | chr2_1:56738058-56738077 | Msa0213620:intron | 55.0% | |
| GCCAGTTGAGCTAGGACTTG+TGG | + | chr2_1:56738127-56738146 | Msa0213620:intron | 55.0% | |
| GGCGTCAAGGTCTATGCTTC+TGG | + | chr2_1:56740055-56740074 | Msa0213620:CDS | 55.0% | |
| AGAAGGGATTCCGTCTACCG+CGG | + | chr2_1:56740773-56740792 | Msa0213620:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 56737305 | 56740911 | 56737305 | ID=Msa0213620;Name=Msa0213620 |
| chr2_1 | mRNA | 56737305 | 56740911 | 56737305 | ID=Msa0213620-mRNA-1;Parent=Msa0213620;Name=Msa0213620-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|0.8|5|0|259 |
| chr2_1 | exon | 56737305 | 56737512 | 56737305 | ID=Msa0213620-mRNA-1:exon:15745;Parent=Msa0213620-mRNA-1 |
| chr2_1 | exon | 56739277 | 56739378 | 56739277 | ID=Msa0213620-mRNA-1:exon:15746;Parent=Msa0213620-mRNA-1 |
| chr2_1 | exon | 56740026 | 56740161 | 56740026 | ID=Msa0213620-mRNA-1:exon:15747;Parent=Msa0213620-mRNA-1 |
| chr2_1 | exon | 56740507 | 56740684 | 56740507 | ID=Msa0213620-mRNA-1:exon:15748;Parent=Msa0213620-mRNA-1 |
| chr2_1 | exon | 56740759 | 56740911 | 56740759 | ID=Msa0213620-mRNA-1:exon:15749;Parent=Msa0213620-mRNA-1 |
| chr2_1 | CDS | 56737305 | 56737512 | 56737305 | ID=Msa0213620-mRNA-1:cds;Parent=Msa0213620-mRNA-1 |
| chr2_1 | CDS | 56739277 | 56739378 | 56739277 | ID=Msa0213620-mRNA-1:cds;Parent=Msa0213620-mRNA-1 |
| chr2_1 | CDS | 56740026 | 56740161 | 56740026 | ID=Msa0213620-mRNA-1:cds;Parent=Msa0213620-mRNA-1 |
| chr2_1 | CDS | 56740507 | 56740684 | 56740507 | ID=Msa0213620-mRNA-1:cds;Parent=Msa0213620-mRNA-1 |
| chr2_1 | CDS | 56740759 | 56740911 | 56740759 | ID=Msa0213620-mRNA-1:cds;Parent=Msa0213620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
