Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020540 | XP_003621583.1 | 77.632 | 152 | 4 | 1 | 1 | 122 | 53 | 204 | 2.62e-75 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020540 | A2Q632 | 77.632 | 152 | 4 | 1 | 1 | 122 | 53 | 204 | 1.25e-75 | 232 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024280 | Msa1020540 | 0.804370 | 2.231831e-49 | -8.615850e-47 |
| Msa0048950 | Msa1020540 | 0.860605 | 1.838065e-63 | -8.615850e-47 |
| Msa0059880 | Msa1020540 | 0.861896 | 7.431068e-64 | -8.615850e-47 |
| Msa0072030 | Msa1020540 | 0.809736 | 1.632950e-50 | -8.615850e-47 |
| Msa0101650 | Msa1020540 | -0.803647 | 3.154526e-49 | -8.615850e-47 |
| Msa0603950 | Msa1020540 | 0.827529 | 1.488053e-54 | -8.615850e-47 |
| Msa0605400 | Msa1020540 | 0.813166 | 2.937549e-51 | -8.615850e-47 |
| Msa0605410 | Msa1020540 | 0.819193 | 1.320577e-52 | -8.615850e-47 |
| Msa0605470 | Msa1020540 | 0.821892 | 3.171113e-53 | -8.615850e-47 |
| Msa0623980 | Msa1020540 | 0.831901 | 1.283621e-55 | -8.615850e-47 |
| Msa0631700 | Msa1020540 | 0.829770 | 4.273764e-55 | -8.615850e-47 |
| Msa0643840 | Msa1020540 | 0.839103 | 1.935502e-57 | -8.615850e-47 |
| Msa0646210 | Msa1020540 | 0.834441 | 2.992743e-56 | -8.615850e-47 |
| Msa0670260 | Msa1020540 | 0.813040 | 3.129794e-51 | -8.615850e-47 |
| Msa0670360 | Msa1020540 | 0.832151 | 1.113275e-55 | -8.615850e-47 |
| Msa0671640 | Msa1020540 | 0.824748 | 6.823782e-54 | -8.615850e-47 |
| Msa0676190 | Msa1020540 | 0.800675 | 1.289310e-48 | -8.615850e-47 |
| Msa0678620 | Msa1020540 | 0.823917 | 1.069770e-53 | -8.615850e-47 |
| Msa0684720 | Msa1020540 | 0.831839 | 1.329742e-55 | -8.615850e-47 |
| Msa0711240 | Msa1020540 | 0.807952 | 3.931747e-50 | -8.615850e-47 |
| Msa0727480 | Msa1020540 | 0.838859 | 2.239190e-57 | -8.615850e-47 |
| Msa0735280 | Msa1020540 | 0.814365 | 1.599137e-51 | -8.615850e-47 |
| Msa0735340 | Msa1020540 | 0.821004 | 5.084552e-53 | -8.615850e-47 |
| Msa0768670 | Msa1020540 | 0.845235 | 4.609171e-59 | -8.615850e-47 |
| Msa0768720 | Msa1020540 | 0.860143 | 2.536589e-63 | -8.615850e-47 |
| Msa0777210 | Msa1020540 | 0.804735 | 1.872909e-49 | -8.615850e-47 |
| Msa0791300 | Msa1020540 | 0.810141 | 1.335837e-50 | -8.615850e-47 |
| Msa0802590 | Msa1020540 | 0.836923 | 7.040836e-57 | -8.615850e-47 |
| Msa0814160 | Msa1020540 | 0.836791 | 7.608606e-57 | -8.615850e-47 |
| Msa0824860 | Msa1020540 | 0.801917 | 7.180381e-49 | -8.615850e-47 |
| Msa0841130 | Msa1020540 | 0.842005 | 3.367675e-58 | -8.615850e-47 |
| Msa0841170 | Msa1020540 | 0.846260 | 2.428241e-59 | -8.615850e-47 |
| Msa0131460 | Msa1020540 | 0.813700 | 2.241460e-51 | -8.615850e-47 |
| Msa0140270 | Msa1020540 | 0.808664 | 2.772062e-50 | -8.615850e-47 |
| Msa0143680 | Msa1020540 | 0.876325 | 1.527090e-68 | -8.615850e-47 |
| Msa0143710 | Msa1020540 | 0.863115 | 3.133884e-64 | -8.615850e-47 |
| Msa0143740 | Msa1020540 | 0.874311 | 7.456346e-68 | -8.615850e-47 |
| Msa0143770 | Msa1020540 | 0.871643 | 5.843431e-67 | -8.615850e-47 |
| Msa0147670 | Msa1020540 | 0.810498 | 1.118782e-50 | -8.615850e-47 |
| Msa0150910 | Msa1020540 | 0.850250 | 1.917889e-60 | -8.615850e-47 |
| Msa0155850 | Msa1020540 | 0.802866 | 4.577687e-49 | -8.615850e-47 |
| Msa0163340 | Msa1020540 | 0.809032 | 2.312204e-50 | -8.615850e-47 |
| Msa0190670 | Msa1020540 | 0.815027 | 1.141059e-51 | -8.615850e-47 |
| Msa0210790 | Msa1020540 | 0.805636 | 1.212858e-49 | -8.615850e-47 |
| Msa0210850 | Msa1020540 | 0.818331 | 2.072169e-52 | -8.615850e-47 |
| Msa0212550 | Msa1020540 | 0.815941 | 7.140718e-52 | -8.615850e-47 |
| Msa0223880 | Msa1020540 | 0.805089 | 1.579576e-49 | -8.615850e-47 |
| Msa0374130 | Msa1020540 | 0.826484 | 2.645552e-54 | -8.615850e-47 |
| Msa0444200 | Msa1020540 | 0.804401 | 2.198708e-49 | -8.615850e-47 |
| Msa0469550 | Msa1020540 | 0.820875 | 5.443551e-53 | -8.615850e-47 |
| Msa0985700 | Msa1020540 | 0.856279 | 3.580904e-62 | -8.615850e-47 |
| Msa0987640 | Msa1020540 | 0.810872 | 9.284782e-51 | -8.615850e-47 |
| Msa0993450 | Msa1020540 | 0.826453 | 2.690990e-54 | -8.615850e-47 |
| Msa1003110 | Msa1020540 | 0.825658 | 4.156411e-54 | -8.615850e-47 |
| Msa1020540 | Msa1021620 | 0.867919 | 9.591640e-66 | -8.615850e-47 |
| Msa1020540 | Msa1024350 | 0.826720 | 2.324037e-54 | -8.615850e-47 |
| Msa1020540 | Msa1026050 | 0.801761 | 7.728927e-49 | -8.615850e-47 |
| Msa1020540 | Msa1061670 | 0.821314 | 4.313378e-53 | -8.615850e-47 |
| Msa1020540 | Msa1076830 | 0.819461 | 1.147578e-52 | -8.615850e-47 |
| Msa1020540 | Msa1087370 | 0.819010 | 1.453633e-52 | -8.615850e-47 |
| Msa1020540 | Msa1087380 | 0.824321 | 8.597821e-54 | -8.615850e-47 |
| Msa1020540 | Msa1091000 | 0.809154 | 2.177488e-50 | -8.615850e-47 |
| Msa1020540 | Msa1106960 | 0.809751 | 1.620449e-50 | -8.615850e-47 |
| Msa1020540 | Msa1109880 | 0.826010 | 3.430606e-54 | -8.615850e-47 |
| Msa1020540 | Msa1109890 | 0.853384 | 2.476089e-61 | -8.615850e-47 |
| Msa1020540 | Msa1133860 | 0.821388 | 4.146617e-53 | -8.615850e-47 |
| Msa1020540 | Msa1149020 | 0.843115 | 1.708679e-58 | -8.615850e-47 |
| Msa1020540 | Msa1157390 | 0.814934 | 1.196475e-51 | -8.615850e-47 |
| Msa1020540 | Msa1170320 | 0.818449 | 1.948495e-52 | -8.615850e-47 |
| Msa1020540 | Msa1214960 | 0.845450 | 4.030762e-59 | -8.615850e-47 |
| Msa1020540 | Msa1216600 | 0.806924 | 6.493445e-50 | -8.615850e-47 |
| Msa1020540 | Msa1286420 | 0.852785 | 3.674430e-61 | -8.615850e-47 |
| Msa1020540 | Msa1296870 | 0.806455 | 8.160038e-50 | -8.615850e-47 |
| Msa1020540 | Msa1323030 | 0.856911 | 2.335672e-62 | -8.615850e-47 |
| Msa1020540 | Msa1323120 | 0.821936 | 3.097772e-53 | -8.615850e-47 |
| Msa1020540 | Msa1323160 | 0.806915 | 6.522075e-50 | -8.615850e-47 |
| Msa1020540 | Msa1329740 | 0.806073 | 9.818947e-50 | -8.615850e-47 |
| Msa1020540 | Msa1357490 | 0.829491 | 4.998125e-55 | -8.615850e-47 |
| Msa1020540 | Msa1357860 | 0.821729 | 3.458311e-53 | -8.615850e-47 |
| Msa1020540 | Msa1373560 | 0.837417 | 5.264069e-57 | -8.615850e-47 |
| Msa1020540 | Msa1376070 | 0.818936 | 1.511393e-52 | -8.615850e-47 |
| Msa1020540 | Msa1377520 | 0.825554 | 4.401254e-54 | -8.615850e-47 |
| Msa1020540 | Msa1378400 | 0.809350 | 1.975892e-50 | -8.615850e-47 |
| Msa1020540 | Msa1386120 | 0.803836 | 2.883037e-49 | -8.615850e-47 |
| Msa1020540 | Msa1407670 | 0.832430 | 9.495496e-56 | -8.615850e-47 |
| Msa1020540 | Msa1420020 | 0.805362 | 1.384419e-49 | -8.615850e-47 |
| Msa1020540 | Msa1421120 | 0.813408 | 2.598531e-51 | -8.615850e-47 |
| Msa1020540 | Msa1421130 | 0.802456 | 5.562968e-49 | -8.615850e-47 |
| Msa1020540 | Msa1426420 | 0.807048 | 6.112916e-50 | -8.615850e-47 |
| Msa1020540 | Msa1427670 | 0.802940 | 4.419591e-49 | -8.615850e-47 |
| Msa1020540 | Msa1440400 | 0.837617 | 4.676359e-57 | -8.615850e-47 |
| Msa1020540 | Msa1449770 | 0.833716 | 4.546638e-56 | -8.615850e-47 |
| Msa0251120 | Msa1020540 | 0.805286 | 1.436802e-49 | -8.615850e-47 |
| Msa0252930 | Msa1020540 | 0.829601 | 4.698441e-55 | -8.615850e-47 |
| Msa0265060 | Msa1020540 | 0.802648 | 5.078944e-49 | -8.615850e-47 |
| Msa0274250 | Msa1020540 | 0.823146 | 1.620586e-53 | -8.615850e-47 |
| Msa0274260 | Msa1020540 | 0.811141 | 8.120364e-51 | -8.615850e-47 |
| Msa0298270 | Msa1020540 | 0.806364 | 8.526412e-50 | -8.615850e-47 |
| Msa0314440 | Msa1020540 | 0.801482 | 8.817665e-49 | -8.615850e-47 |
| Msa0329650 | Msa1020540 | 0.801811 | 7.550679e-49 | -8.615850e-47 |
| Msa0340650 | Msa1020540 | 0.808621 | 2.830641e-50 | -8.615850e-47 |
| Msa0343720 | Msa1020540 | 0.801271 | 9.740191e-49 | -8.615850e-47 |
| Msa0491760 | Msa1020540 | 0.811953 | 5.410053e-51 | -8.615850e-47 |
| Msa0491770 | Msa1020540 | 0.815769 | 7.802449e-52 | -8.615850e-47 |
| Msa0515260 | Msa1020540 | 0.816620 | 5.034947e-52 | -8.615850e-47 |
| Msa0535570 | Msa1020540 | 0.833290 | 5.805726e-56 | -8.615850e-47 |
| Msa0548970 | Msa1020540 | 0.827487 | 1.522592e-54 | -8.615850e-47 |
| Msa0549920 | Msa1020540 | 0.852573 | 4.225899e-61 | -8.615850e-47 |
| Msa0549930 | Msa1020540 | 0.834824 | 2.397469e-56 | -8.615850e-47 |
| Msa0579530 | Msa1020540 | 0.811536 | 6.667589e-51 | -8.615850e-47 |
| Msa0584970 | Msa1020540 | 0.813788 | 2.143170e-51 | -8.615850e-47 |
| Msa0591490 | Msa1020540 | 0.804152 | 2.478026e-49 | -8.615850e-47 |
| Msa0599600 | Msa1020540 | 0.800117 | 1.674798e-48 | -8.615850e-47 |
| Msa0602050 | Msa1020540 | 0.807363 | 5.243261e-50 | -8.615850e-47 |
| Msa0854840 | Msa1020540 | 0.820432 | 6.881853e-53 | -8.615850e-47 |
| Msa0854860 | Msa1020540 | 0.803894 | 2.803180e-49 | -8.615850e-47 |
| Msa0861730 | Msa1020540 | 0.801284 | 9.679992e-49 | -8.615850e-47 |
| Msa0863840 | Msa1020540 | 0.800815 | 1.207541e-48 | -8.615850e-47 |
| Msa0883640 | Msa1020540 | 0.856712 | 2.672231e-62 | -8.615850e-47 |
| Msa0902340 | Msa1020540 | 0.849781 | 2.594735e-60 | -8.615850e-47 |
| Msa0910830 | Msa1020540 | 0.875817 | 2.284973e-68 | -8.615850e-47 |
| Msa0913550 | Msa1020540 | 0.811490 | 6.821915e-51 | -8.615850e-47 |
| Msa0951150 | Msa1020540 | 0.801274 | 9.727585e-49 | -8.615850e-47 |
| Msa0960090 | Msa1020540 | 0.858257 | 9.326543e-63 | -8.615850e-47 |
| Msa0967820 | Msa1020540 | 0.809744 | 1.626390e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1020540 | MtrunA17_Chr7g0220411 | 77.632 | 152 | 4 | 1 | 1 | 122 | 53 | 204 | 2.41e-79 | 232 |
| Msa1020540 | MtrunA17_Chr7g0220401 | 53.247 | 77 | 28 | 6 | 42 | 113 | 56 | 129 | 4.41e-12 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATACACTATGGATTATT+AGG | 0.191132 | 7_1:-44185555 | None:intergenic |
| TTGTGATGTTGTGCCAATTA+AGG | 0.246710 | 7_1:+44185386 | Msa1020540:CDS |
| AGAGAGACTTCAAAGATTTC+AGG | 0.285228 | 7_1:+44184496 | Msa1020540:CDS |
| TGTTTCTTCATGATGCATTA+TGG | 0.299984 | 7_1:-44184449 | None:intergenic |
| CTCTCTGGGCTACCCTTAAT+TGG | 0.306444 | 7_1:-44185399 | None:intergenic |
| ATAGACCTTGTTGATCTCTC+TGG | 0.319933 | 7_1:-44185414 | None:intergenic |
| ATTAGGTTGGTGGTTATTGA+TGG | 0.351867 | 7_1:-44185538 | None:intergenic |
| GGTTATTGATGGGTGGCCTA+TGG | 0.383756 | 7_1:-44185527 | None:intergenic |
| CATATGAGGAAGCTAGGATT+AGG | 0.383881 | 7_1:+44184424 | Msa1020540:CDS |
| TGTGATGTTGTGCCAATTAA+GGG | 0.423992 | 7_1:+44185387 | Msa1020540:CDS |
| GTTATTGATGGGTGGCCTAT+GGG | 0.426738 | 7_1:-44185526 | None:intergenic |
| ACAAGTGATGATTCTAAGAA+TGG | 0.430722 | 7_1:+44184469 | Msa1020540:CDS |
| TACACTATGGATTATTAGGT+TGG | 0.431300 | 7_1:-44185551 | None:intergenic |
| ATTGATGCTGCAAAAGAGAT+TGG | 0.439380 | 7_1:+44185462 | Msa1020540:CDS |
| TATAAAGACTATAGTCATAA+GGG | 0.449557 | 7_1:+44185495 | Msa1020540:CDS |
| GTATAAAGACTATAGTCATA+AGG | 0.458134 | 7_1:+44185494 | Msa1020540:CDS |
| TTAGGTTGGTGGTTATTGAT+GGG | 0.477398 | 7_1:-44185537 | None:intergenic |
| AATCCAGTGATTCTCTGAAA+AGG | 0.485827 | 7_1:-44184397 | None:intergenic |
| TAGACCTTGTTGATCTCTCT+GGG | 0.503078 | 7_1:-44185413 | None:intergenic |
| ATTCCTTGGAATTTCAAACT+TGG | 0.505171 | 7_1:-44185328 | None:intergenic |
| TCACCAAGTTTGAAATTCCA+AGG | 0.527456 | 7_1:+44185325 | Msa1020540:CDS |
| ACTATGGATTATTAGGTTGG+TGG | 0.530182 | 7_1:-44185548 | None:intergenic |
| TGAACACTTTGTGTTTGTGT+TGG | 0.535270 | 7_1:-44185358 | None:intergenic |
| TTGATGGGTGGCCTATGGGA+TGG | 0.541064 | 7_1:-44185522 | None:intergenic |
| GGTTGGTGGTTATTGATGGG+TGG | 0.541114 | 7_1:-44185534 | None:intergenic |
| GTGTTGGTGAGGCTATTCCT+TGG | 0.562537 | 7_1:-44185342 | None:intergenic |
| ACTTTGTGTTTGTGTTGGTG+AGG | 0.582251 | 7_1:-44185353 | None:intergenic |
| ATAAGGGAAAGCCATCCCAT+AGG | 0.646277 | 7_1:+44185511 | Msa1020540:CDS |
| GTAGCCCAGAGAGATCAACA+AGG | 0.801014 | 7_1:+44185409 | Msa1020540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTGTTCATTTTTAAAT+CGG | + | chr7_1:44185187-44185206 | Msa1020540:intron | 10.0% |
| !! | TGTTTAATAGAATATTAATA+TGG | - | chr7_1:44185267-44185286 | None:intergenic | 10.0% |
| !!! | AAATTTGTTCATTTTTAAAT+CGG | + | chr7_1:44185187-44185206 | Msa1020540:intron | 10.0% |
| !! | TGTTTAATAGAATATTAATA+TGG | - | chr7_1:44185267-44185286 | None:intergenic | 10.0% |
| !! | ACAATATACTAGAATATTAA+TGG | - | chr7_1:44184843-44184862 | None:intergenic | 15.0% |
| !! | ACAATATACTAGAATATTAA+TGG | - | chr7_1:44184843-44184862 | None:intergenic | 15.0% |
| !!! | TAATTTTCTAGCTTATGAAA+AGG | + | chr7_1:44184816-44184835 | Msa1020540:intron | 20.0% |
| !! | AATATTCTAGTATATTGTGA+AGG | + | chr7_1:44184845-44184864 | Msa1020540:intron | 20.0% |
| !! | ACAGAAAATTATATATTGCA+AGG | - | chr7_1:44185100-44185119 | None:intergenic | 20.0% |
| !! | TAAAAAGTTGTATATTCGTA+AGG | - | chr7_1:44185130-44185149 | None:intergenic | 20.0% |
| !!! | AACTTTTTACTTTTGATCTT+CGG | + | chr7_1:44185141-44185160 | Msa1020540:intron | 20.0% |
| !!! | AAAAATGAACAAATTTTGCA+GGG | - | chr7_1:44185183-44185202 | None:intergenic | 20.0% |
| !!! | TAAAAATGAACAAATTTTGC+AGG | - | chr7_1:44185184-44185203 | None:intergenic | 20.0% |
| !! | TATAAAGACTATAGTCATAA+GGG | + | chr7_1:44185495-44185514 | Msa1020540:CDS | 20.0% |
| !!! | TAATTTTCTAGCTTATGAAA+AGG | + | chr7_1:44184816-44184835 | Msa1020540:intron | 20.0% |
| !! | AATATTCTAGTATATTGTGA+AGG | + | chr7_1:44184845-44184864 | Msa1020540:intron | 20.0% |
| !! | ACAGAAAATTATATATTGCA+AGG | - | chr7_1:44185100-44185119 | None:intergenic | 20.0% |
| !! | TAAAAAGTTGTATATTCGTA+AGG | - | chr7_1:44185130-44185149 | None:intergenic | 20.0% |
| !!! | AACTTTTTACTTTTGATCTT+CGG | + | chr7_1:44185141-44185160 | Msa1020540:intron | 20.0% |
| !!! | AAAAATGAACAAATTTTGCA+GGG | - | chr7_1:44185183-44185202 | None:intergenic | 20.0% |
| !!! | TAAAAATGAACAAATTTTGC+AGG | - | chr7_1:44185184-44185203 | None:intergenic | 20.0% |
| !! | TATAAAGACTATAGTCATAA+GGG | + | chr7_1:44185495-44185514 | Msa1020540:CDS | 20.0% |
| ! | TATAAAGAATACGCATGTTA+AGG | - | chr7_1:44184898-44184917 | None:intergenic | 25.0% |
| ! | GTATAAAGACTATAGTCATA+AGG | + | chr7_1:44185494-44185513 | Msa1020540:CDS | 25.0% |
| ! | TATAAAGAATACGCATGTTA+AGG | - | chr7_1:44184898-44184917 | None:intergenic | 25.0% |
| ! | GTATAAAGACTATAGTCATA+AGG | + | chr7_1:44185494-44185513 | Msa1020540:CDS | 25.0% |
| !!! | TCACTGGATTTTTTCATATG+AGG | + | chr7_1:44184410-44184429 | Msa1020540:CDS | 30.0% |
| !!! | TTTTTTCATATGAGGAAGCT+AGG | + | chr7_1:44184418-44184437 | Msa1020540:CDS | 30.0% |
| TGTTTCTTCATGATGCATTA+TGG | - | chr7_1:44184452-44184471 | None:intergenic | 30.0% | |
| ! | ACAAGTGATGATTCTAAGAA+TGG | + | chr7_1:44184469-44184488 | Msa1020540:CDS | 30.0% |
| ATGGAATATGTGACTTTGAA+AGG | + | chr7_1:44184533-44184552 | Msa1020540:intron | 30.0% | |
| ! | TGGAATATGTGACTTTGAAA+GGG | + | chr7_1:44184534-44184553 | Msa1020540:intron | 30.0% |
| GATTTCACTGATGATTATCA+TGG | + | chr7_1:44184646-44184665 | Msa1020540:intron | 30.0% | |
| ! | TTTCACACTCAGTTATGTTT+TGG | - | chr7_1:44184688-44184707 | None:intergenic | 30.0% |
| ATTCCTTGGAATTTCAAACT+TGG | - | chr7_1:44185331-44185350 | None:intergenic | 30.0% | |
| !!! | TCACTGGATTTTTTCATATG+AGG | + | chr7_1:44184410-44184429 | Msa1020540:CDS | 30.0% |
| !!! | TTTTTTCATATGAGGAAGCT+AGG | + | chr7_1:44184418-44184437 | Msa1020540:CDS | 30.0% |
| TGTTTCTTCATGATGCATTA+TGG | - | chr7_1:44184452-44184471 | None:intergenic | 30.0% | |
| ! | ACAAGTGATGATTCTAAGAA+TGG | + | chr7_1:44184469-44184488 | Msa1020540:CDS | 30.0% |
| ATGGAATATGTGACTTTGAA+AGG | + | chr7_1:44184533-44184552 | Msa1020540:intron | 30.0% | |
| ! | TGGAATATGTGACTTTGAAA+GGG | + | chr7_1:44184534-44184553 | Msa1020540:intron | 30.0% |
| GATTTCACTGATGATTATCA+TGG | + | chr7_1:44184646-44184665 | Msa1020540:intron | 30.0% | |
| ! | TTTCACACTCAGTTATGTTT+TGG | - | chr7_1:44184688-44184707 | None:intergenic | 30.0% |
| ATTCCTTGGAATTTCAAACT+TGG | - | chr7_1:44185331-44185350 | None:intergenic | 30.0% | |
| ! | AATCCAGTGATTCTCTGAAA+AGG | - | chr7_1:44184400-44184419 | None:intergenic | 35.0% |
| AGAGAGACTTCAAAGATTTC+AGG | + | chr7_1:44184496-44184515 | Msa1020540:CDS | 35.0% | |
| ! | AATATGTGACTTTGAAAGGG+AGG | + | chr7_1:44184537-44184556 | Msa1020540:intron | 35.0% |
| ! | ATATGTGACTTTGAAAGGGA+GGG | + | chr7_1:44184538-44184557 | Msa1020540:intron | 35.0% |
| ACCAACAAGAAAGCTGAAAA+TGG | + | chr7_1:44184609-44184628 | Msa1020540:intron | 35.0% | |
| ! | TCCATTTTCAGCTTTCTTGT+TGG | - | chr7_1:44184613-44184632 | None:intergenic | 35.0% |
| ! | AGAAAGCTGAAAATGGACTT+TGG | + | chr7_1:44184616-44184635 | Msa1020540:intron | 35.0% |
| !! | ACACTCAGTTATGTTTTGGA+AGG | - | chr7_1:44184684-44184703 | None:intergenic | 35.0% |
| ! | ACAGAAGCATATGACAATGA+AGG | + | chr7_1:44185284-44185303 | Msa1020540:intron | 35.0% |
| ! | TCACCAAGTTTGAAATTCCA+AGG | + | chr7_1:44185325-44185344 | Msa1020540:CDS | 35.0% |
| TGAACACTTTGTGTTTGTGT+TGG | - | chr7_1:44185361-44185380 | None:intergenic | 35.0% | |
| TTGTGATGTTGTGCCAATTA+AGG | + | chr7_1:44185386-44185405 | Msa1020540:CDS | 35.0% | |
| TGTGATGTTGTGCCAATTAA+GGG | + | chr7_1:44185387-44185406 | Msa1020540:CDS | 35.0% | |
| ATTGATGCTGCAAAAGAGAT+TGG | + | chr7_1:44185462-44185481 | Msa1020540:CDS | 35.0% | |
| !! | TTAGGTTGGTGGTTATTGAT+GGG | - | chr7_1:44185540-44185559 | None:intergenic | 35.0% |
| !! | ATTAGGTTGGTGGTTATTGA+TGG | - | chr7_1:44185541-44185560 | None:intergenic | 35.0% |
| ! | AATCCAGTGATTCTCTGAAA+AGG | - | chr7_1:44184400-44184419 | None:intergenic | 35.0% |
| AGAGAGACTTCAAAGATTTC+AGG | + | chr7_1:44184496-44184515 | Msa1020540:CDS | 35.0% | |
| ! | AATATGTGACTTTGAAAGGG+AGG | + | chr7_1:44184537-44184556 | Msa1020540:intron | 35.0% |
| ! | ATATGTGACTTTGAAAGGGA+GGG | + | chr7_1:44184538-44184557 | Msa1020540:intron | 35.0% |
| ACCAACAAGAAAGCTGAAAA+TGG | + | chr7_1:44184609-44184628 | Msa1020540:intron | 35.0% | |
| ! | TCCATTTTCAGCTTTCTTGT+TGG | - | chr7_1:44184613-44184632 | None:intergenic | 35.0% |
| ! | AGAAAGCTGAAAATGGACTT+TGG | + | chr7_1:44184616-44184635 | Msa1020540:intron | 35.0% |
| !! | ACACTCAGTTATGTTTTGGA+AGG | - | chr7_1:44184684-44184703 | None:intergenic | 35.0% |
| ! | ACAGAAGCATATGACAATGA+AGG | + | chr7_1:44185284-44185303 | Msa1020540:intron | 35.0% |
| ! | TCACCAAGTTTGAAATTCCA+AGG | + | chr7_1:44185325-44185344 | Msa1020540:CDS | 35.0% |
| TGAACACTTTGTGTTTGTGT+TGG | - | chr7_1:44185361-44185380 | None:intergenic | 35.0% | |
| TTGTGATGTTGTGCCAATTA+AGG | + | chr7_1:44185386-44185405 | Msa1020540:CDS | 35.0% | |
| TGTGATGTTGTGCCAATTAA+GGG | + | chr7_1:44185387-44185406 | Msa1020540:CDS | 35.0% | |
| ATTGATGCTGCAAAAGAGAT+TGG | + | chr7_1:44185462-44185481 | Msa1020540:CDS | 35.0% | |
| !! | TTAGGTTGGTGGTTATTGAT+GGG | - | chr7_1:44185540-44185559 | None:intergenic | 35.0% |
| !! | ATTAGGTTGGTGGTTATTGA+TGG | - | chr7_1:44185541-44185560 | None:intergenic | 35.0% |
| ! | GAACCTTTTCAGAGAATCAC+TGG | + | chr7_1:44184394-44184413 | Msa1020540:CDS | 40.0% |
| CATATGAGGAAGCTAGGATT+AGG | + | chr7_1:44184424-44184443 | Msa1020540:CDS | 40.0% | |
| TCAGGTGCAACTTATTGTGA+TGG | + | chr7_1:44184514-44184533 | Msa1020540:intron | 40.0% | |
| ! | TATGTGACTTTGAAAGGGAG+GGG | + | chr7_1:44184539-44184558 | Msa1020540:intron | 40.0% |
| CTGATGATTATCATGGACCA+AGG | + | chr7_1:44184653-44184672 | Msa1020540:intron | 40.0% | |
| !!! | CTCAGTTATGTTTTGGAAGG+TGG | - | chr7_1:44184681-44184700 | None:intergenic | 40.0% |
| AGCTATAGCTTCATCAGTGT+AGG | + | chr7_1:44184740-44184759 | Msa1020540:intron | 40.0% | |
| CATTCTCATTACCTGTGGAA+TGG | - | chr7_1:44184988-44185007 | None:intergenic | 40.0% | |
| TCCACAGGTAATGAGAATGA+TGG | + | chr7_1:44184989-44185008 | Msa1020540:intron | 40.0% | |
| ACCATCATTCTCATTACCTG+TGG | - | chr7_1:44184993-44185012 | None:intergenic | 40.0% | |
| GTAATGAGAATGATGGTCTG+AGG | + | chr7_1:44184996-44185015 | Msa1020540:intron | 40.0% | |
| GCATATGACAATGAAGGCAA+AGG | + | chr7_1:44185290-44185309 | Msa1020540:intron | 40.0% | |
| ! | ACTTTGTGTTTGTGTTGGTG+AGG | - | chr7_1:44185356-44185375 | None:intergenic | 40.0% |
| TAGACCTTGTTGATCTCTCT+GGG | - | chr7_1:44185416-44185435 | None:intergenic | 40.0% | |
| ATAGACCTTGTTGATCTCTC+TGG | - | chr7_1:44185417-44185436 | None:intergenic | 40.0% | |
| CCACCAACCTAATAATCCAT+AGG | + | chr7_1:44185548-44185567 | Msa1020540:CDS | 40.0% | |
| ! | GAACCTTTTCAGAGAATCAC+TGG | + | chr7_1:44184394-44184413 | Msa1020540:CDS | 40.0% |
| CATATGAGGAAGCTAGGATT+AGG | + | chr7_1:44184424-44184443 | Msa1020540:CDS | 40.0% | |
| TCAGGTGCAACTTATTGTGA+TGG | + | chr7_1:44184514-44184533 | Msa1020540:intron | 40.0% | |
| ! | TATGTGACTTTGAAAGGGAG+GGG | + | chr7_1:44184539-44184558 | Msa1020540:intron | 40.0% |
| CTGATGATTATCATGGACCA+AGG | + | chr7_1:44184653-44184672 | Msa1020540:intron | 40.0% | |
| !!! | CTCAGTTATGTTTTGGAAGG+TGG | - | chr7_1:44184681-44184700 | None:intergenic | 40.0% |
| AGCTATAGCTTCATCAGTGT+AGG | + | chr7_1:44184740-44184759 | Msa1020540:intron | 40.0% | |
| CATTCTCATTACCTGTGGAA+TGG | - | chr7_1:44184988-44185007 | None:intergenic | 40.0% | |
| TCCACAGGTAATGAGAATGA+TGG | + | chr7_1:44184989-44185008 | Msa1020540:intron | 40.0% | |
| ACCATCATTCTCATTACCTG+TGG | - | chr7_1:44184993-44185012 | None:intergenic | 40.0% | |
| GTAATGAGAATGATGGTCTG+AGG | + | chr7_1:44184996-44185015 | Msa1020540:intron | 40.0% | |
| GCATATGACAATGAAGGCAA+AGG | + | chr7_1:44185290-44185309 | Msa1020540:intron | 40.0% | |
| ! | ACTTTGTGTTTGTGTTGGTG+AGG | - | chr7_1:44185356-44185375 | None:intergenic | 40.0% |
| TAGACCTTGTTGATCTCTCT+GGG | - | chr7_1:44185416-44185435 | None:intergenic | 40.0% | |
| ATAGACCTTGTTGATCTCTC+TGG | - | chr7_1:44185417-44185436 | None:intergenic | 40.0% | |
| ! | CTATGTTGCTTCCATTCCAC+AGG | + | chr7_1:44184974-44184993 | Msa1020540:intron | 45.0% |
| ATAAGGGAAAGCCATCCCAT+AGG | + | chr7_1:44185511-44185530 | Msa1020540:CDS | 45.0% | |
| ! | GTTATTGATGGGTGGCCTAT+GGG | - | chr7_1:44185529-44185548 | None:intergenic | 45.0% |
| ! | CTATGTTGCTTCCATTCCAC+AGG | + | chr7_1:44184974-44184993 | Msa1020540:intron | 45.0% |
| ATAAGGGAAAGCCATCCCAT+AGG | + | chr7_1:44185511-44185530 | Msa1020540:CDS | 45.0% | |
| ! | GTTATTGATGGGTGGCCTAT+GGG | - | chr7_1:44185529-44185548 | None:intergenic | 45.0% |
| !!! | TGTTTTGGAAGGTGGTGCCT+TGG | - | chr7_1:44184673-44184692 | None:intergenic | 50.0% |
| GCGCATCGTTCGTTTGTACT+TGG | - | chr7_1:44185042-44185061 | None:intergenic | 50.0% | |
| AGTACAAACGAACGATGCGC+AGG | + | chr7_1:44185042-44185061 | Msa1020540:intron | 50.0% | |
| ! | GTGTTGGTGAGGCTATTCCT+TGG | - | chr7_1:44185345-44185364 | None:intergenic | 50.0% |
| CTCTCTGGGCTACCCTTAAT+TGG | - | chr7_1:44185402-44185421 | None:intergenic | 50.0% | |
| GTAGCCCAGAGAGATCAACA+AGG | + | chr7_1:44185409-44185428 | Msa1020540:CDS | 50.0% | |
| ! | GGTTATTGATGGGTGGCCTA+TGG | - | chr7_1:44185530-44185549 | None:intergenic | 50.0% |
| !! | GGTTGGTGGTTATTGATGGG+TGG | - | chr7_1:44185537-44185556 | None:intergenic | 50.0% |
| !!! | TGTTTTGGAAGGTGGTGCCT+TGG | - | chr7_1:44184673-44184692 | None:intergenic | 50.0% |
| GCGCATCGTTCGTTTGTACT+TGG | - | chr7_1:44185042-44185061 | None:intergenic | 50.0% | |
| AGTACAAACGAACGATGCGC+AGG | + | chr7_1:44185042-44185061 | Msa1020540:intron | 50.0% | |
| ! | GTGTTGGTGAGGCTATTCCT+TGG | - | chr7_1:44185345-44185364 | None:intergenic | 50.0% |
| CTCTCTGGGCTACCCTTAAT+TGG | - | chr7_1:44185402-44185421 | None:intergenic | 50.0% | |
| GTAGCCCAGAGAGATCAACA+AGG | + | chr7_1:44185409-44185428 | Msa1020540:CDS | 50.0% | |
| ! | GGTTATTGATGGGTGGCCTA+TGG | - | chr7_1:44185530-44185549 | None:intergenic | 50.0% |
| !! | GGTTGGTGGTTATTGATGGG+TGG | - | chr7_1:44185537-44185556 | None:intergenic | 50.0% |
| ! | TTGATGGGTGGCCTATGGGA+TGG | - | chr7_1:44185525-44185544 | None:intergenic | 55.0% |
| ! | TTGATGGGTGGCCTATGGGA+TGG | - | chr7_1:44185525-44185544 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 44184394 | 44185569 | 44184394 | ID=Msa1020540;Name=Msa1020540 |
| chr7_1 | mRNA | 44184394 | 44185569 | 44184394 | ID=Msa1020540-mRNA-1;Parent=Msa1020540;Name=Msa1020540-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|0|0.5|2|0|122 |
| chr7_1 | exon | 44184394 | 44184517 | 44184394 | ID=Msa1020540-mRNA-1:exon:8552;Parent=Msa1020540-mRNA-1 |
| chr7_1 | exon | 44185325 | 44185569 | 44185325 | ID=Msa1020540-mRNA-1:exon:8553;Parent=Msa1020540-mRNA-1 |
| chr7_1 | CDS | 44184394 | 44184517 | 44184394 | ID=Msa1020540-mRNA-1:cds;Parent=Msa1020540-mRNA-1 |
| chr7_1 | CDS | 44185325 | 44185569 | 44185325 | ID=Msa1020540-mRNA-1:cds;Parent=Msa1020540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
