Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660040 | XP_003630403.2 | 97.706 | 436 | 10 | 0 | 1 | 436 | 262 | 697 | 0.0 | 879 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660040 | sp|Q54ST3|Y2237_DICDI | 33.871 | 124 | 74 | 4 | 311 | 433 | 767 | 883 | 1.14e-11 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0660040 | TR | DDT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003630 | Msa0660040 | 0.804246 | 2.368371e-49 | -8.615850e-47 |
| Msa0037770 | Msa0660040 | 0.813272 | 2.784253e-51 | -8.615850e-47 |
| Msa0043650 | Msa0660040 | 0.809722 | 1.643985e-50 | -8.615850e-47 |
| Msa0045490 | Msa0660040 | 0.802684 | 4.990691e-49 | -8.615850e-47 |
| Msa0047640 | Msa0660040 | 0.807206 | 5.660984e-50 | -8.615850e-47 |
| Msa0054820 | Msa0660040 | 0.801911 | 7.200696e-49 | -8.615850e-47 |
| Msa0077900 | Msa0660040 | 0.800939 | 1.139099e-48 | -8.615850e-47 |
| Msa0080830 | Msa0660040 | 0.809429 | 1.900615e-50 | -8.615850e-47 |
| Msa0106620 | Msa0660040 | 0.807332 | 5.323580e-50 | -8.615850e-47 |
| Msa0604530 | Msa0660040 | 0.845043 | 5.194381e-59 | -8.615850e-47 |
| Msa0619660 | Msa0660040 | 0.832486 | 9.198987e-56 | -8.615850e-47 |
| Msa0626630 | Msa0660040 | 0.802099 | 6.588745e-49 | -8.615850e-47 |
| Msa0645620 | Msa0660040 | 0.841003 | 6.181835e-58 | -8.615850e-47 |
| Msa0648830 | Msa0660040 | 0.802395 | 5.726427e-49 | -8.615850e-47 |
| Msa0652690 | Msa0660040 | 0.824652 | 7.187896e-54 | -8.615850e-47 |
| Msa0658590 | Msa0660040 | 0.800377 | 1.482800e-48 | -8.615850e-47 |
| Msa0660040 | Msa0664750 | 0.806128 | 9.561821e-50 | -8.615850e-47 |
| Msa0660040 | Msa0685200 | 0.847851 | 8.901247e-60 | -8.615850e-47 |
| Msa0660040 | Msa0695130 | 0.818850 | 1.580907e-52 | -8.615850e-47 |
| Msa0660040 | Msa0703440 | 0.804749 | 1.860689e-49 | -8.615850e-47 |
| Msa0660040 | Msa0706090 | 0.923804 | 1.637331e-89 | -8.615850e-47 |
| Msa0660040 | Msa0706100 | 0.922152 | 1.425824e-88 | -8.615850e-47 |
| Msa0660040 | Msa0712560 | 0.842787 | 2.089233e-58 | -8.615850e-47 |
| Msa0660040 | Msa0791090 | 0.803601 | 3.224539e-49 | -8.615850e-47 |
| Msa0660040 | Msa0945240 | 0.828528 | 8.550687e-55 | -8.615850e-47 |
| Msa0660040 | Msa0970530 | 0.802917 | 4.467355e-49 | -8.615850e-47 |
| Msa0660040 | Msa1074350 | 0.801961 | 7.031107e-49 | -8.615850e-47 |
| Msa0660040 | Msa1080490 | 0.851863 | 6.727349e-61 | -8.615850e-47 |
| Msa0660040 | Msa1123350 | 0.800781 | 1.226619e-48 | -8.615850e-47 |
| Msa0660040 | Msa1123770 | 0.800430 | 1.446639e-48 | -8.615850e-47 |
| Msa0660040 | Msa1126240 | 0.824051 | 9.950942e-54 | -8.615850e-47 |
| Msa0660040 | Msa1133400 | 0.802688 | 4.981740e-49 | -8.615850e-47 |
| Msa0660040 | Msa1163880 | 0.803176 | 3.949697e-49 | -8.615850e-47 |
| Msa0660040 | Msa1226470 | 0.808367 | 3.206445e-50 | -8.615850e-47 |
| Msa0660040 | Msa1298100 | 0.820341 | 7.220475e-53 | -8.615850e-47 |
| Msa0660040 | Msa1307180 | 0.807650 | 4.556114e-50 | -8.615850e-47 |
| Msa0660040 | Msa1332590 | 0.800215 | 1.600309e-48 | -8.615850e-47 |
| Msa0660040 | Msa1349520 | 0.851570 | 8.141953e-61 | -8.615850e-47 |
| Msa0660040 | Msa1357080 | 0.815591 | 8.547336e-52 | -8.615850e-47 |
| Msa0660040 | Msa1359560 | 0.815590 | 8.551346e-52 | -8.615850e-47 |
| Msa0660040 | Msa1376200 | 0.812403 | 4.315580e-51 | -8.615850e-47 |
| Msa0660040 | Msa1383530 | 0.802607 | 5.177866e-49 | -8.615850e-47 |
| Msa0660040 | Msa1383740 | 0.821904 | 3.150911e-53 | -8.615850e-47 |
| Msa0660040 | Msa1385720 | 0.801493 | 8.773459e-49 | -8.615850e-47 |
| Msa0660040 | Msa1393840 | -0.802880 | 4.548377e-49 | -8.615850e-47 |
| Msa0660040 | Msa1413380 | 0.847466 | 1.136307e-59 | -8.615850e-47 |
| Msa0660040 | Msa1434090 | 0.816594 | 5.102902e-52 | -8.615850e-47 |
| Msa0660040 | Msa1437330 | 0.814885 | 1.226762e-51 | -8.615850e-47 |
| Msa0127100 | Msa0660040 | 0.801427 | 9.048785e-49 | -8.615850e-47 |
| Msa0136120 | Msa0660040 | 0.807397 | 5.156062e-50 | -8.615850e-47 |
| Msa0173390 | Msa0660040 | 0.815549 | 8.732159e-52 | -8.615850e-47 |
| Msa0237210 | Msa0660040 | 0.806464 | 8.122451e-50 | -8.615850e-47 |
| Msa0372810 | Msa0660040 | 0.805197 | 1.499524e-49 | -8.615850e-47 |
| Msa0378970 | Msa0660040 | 0.851442 | 8.852775e-61 | -8.615850e-47 |
| Msa0389910 | Msa0660040 | 0.818157 | 2.269550e-52 | -8.615850e-47 |
| Msa0422840 | Msa0660040 | 0.801046 | 1.083140e-48 | -8.615850e-47 |
| Msa0422920 | Msa0660040 | 0.806037 | 9.991332e-50 | -8.615850e-47 |
| Msa0428580 | Msa0660040 | 0.838108 | 3.497748e-57 | -8.615850e-47 |
| Msa0430060 | Msa0660040 | 0.833584 | 4.903950e-56 | -8.615850e-47 |
| Msa0430150 | Msa0660040 | 0.831303 | 1.801840e-55 | -8.615850e-47 |
| Msa0437020 | Msa0660040 | 0.808729 | 2.684760e-50 | -8.615850e-47 |
| Msa0474940 | Msa0660040 | 0.843424 | 1.413204e-58 | -8.615850e-47 |
| Msa0480780 | Msa0660040 | 0.828806 | 7.327098e-55 | -8.615850e-47 |
| Msa0481030 | Msa0660040 | 0.825595 | 4.302255e-54 | -8.615850e-47 |
| Msa0481970 | Msa0660040 | 0.818625 | 1.778175e-52 | -8.615850e-47 |
| Msa0308440 | Msa0660040 | 0.812052 | 5.146346e-51 | -8.615850e-47 |
| Msa0315690 | Msa0660040 | 0.800252 | 1.572230e-48 | -8.615850e-47 |
| Msa0333970 | Msa0660040 | -0.809266 | 2.059600e-50 | -8.615850e-47 |
| Msa0341840 | Msa0660040 | 0.806650 | 7.419123e-50 | -8.615850e-47 |
| Msa0484840 | Msa0660040 | 0.803969 | 2.704582e-49 | -8.615850e-47 |
| Msa0500470 | Msa0660040 | 0.831126 | 1.992340e-55 | -8.615850e-47 |
| Msa0517640 | Msa0660040 | 0.811407 | 7.109640e-51 | -8.615850e-47 |
| Msa0521020 | Msa0660040 | 0.802259 | 6.107920e-49 | -8.615850e-47 |
| Msa0523050 | Msa0660040 | 0.826108 | 3.250932e-54 | -8.615850e-47 |
| Msa0542490 | Msa0660040 | 0.857619 | 1.442306e-62 | -8.615850e-47 |
| Msa0544730 | Msa0660040 | 0.809758 | 1.615532e-50 | -8.615850e-47 |
| Msa0569780 | Msa0660040 | 0.819094 | 1.390828e-52 | -8.615850e-47 |
| Msa0581280 | Msa0660040 | 0.810270 | 1.253125e-50 | -8.615850e-47 |
| Msa0588090 | Msa0660040 | 0.805984 | 1.025063e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660040 | MtrunA17_Chr8g0385211 | 97.706 | 436 | 10 | 0 | 1 | 436 | 262 | 697 | 0.0 | 879 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660040 | AT5G08630.1 | 53.017 | 464 | 173 | 9 | 10 | 436 | 268 | 723 | 1.61e-154 | 455 |
| Msa0660040 | AT5G08630.3 | 53.017 | 464 | 173 | 9 | 10 | 436 | 268 | 723 | 1.61e-154 | 455 |
| Msa0660040 | AT5G08630.2 | 53.017 | 464 | 173 | 9 | 10 | 436 | 268 | 723 | 1.61e-154 | 455 |
Find 142 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTCTGATGGATCCTTTC+TGG | 0.107207 | 4_3:-70557082 | None:intergenic |
| TCCTTGTGTTCTTCATGTTC+TGG | 0.261250 | 4_3:-70555883 | None:intergenic |
| AATAATCACATTAAACAAAA+TGG | 0.272373 | 4_3:+70556767 | Msa0660040:CDS |
| AGGAACTTGGGGCCTCTAAA+AGG | 0.283127 | 4_3:+70556636 | Msa0660040:CDS |
| TTCAGATAACAATGGTTAAC+TGG | 0.293549 | 4_3:+70556420 | Msa0660040:intron |
| TTGTGTAGGGAATCTCTTAA+TGG | 0.296835 | 4_3:+70556014 | Msa0660040:CDS |
| CGCTTGTACATCATCCAAAA+TGG | 0.301194 | 4_3:-70558294 | None:intergenic |
| CTGAAAGAACCAGCAGAAAA+TGG | 0.315447 | 4_3:+70557048 | Msa0660040:CDS |
| CCTAATGGGCTTCTACTAAT+AGG | 0.323172 | 4_3:-70557234 | None:intergenic |
| AAGACAATTCACTGGGTAAA+AGG | 0.324894 | 4_3:+70556834 | Msa0660040:CDS |
| AATAGAAACATAAGCAAATC+AGG | 0.326206 | 4_3:-70558581 | None:intergenic |
| ATGGGAATGGCCATGGGAGC+CGG | 0.328171 | 4_3:+70558628 | Msa0660040:three_prime_UTR |
| GATTTGCTTATGTTTCTATT+AGG | 0.333932 | 4_3:+70558584 | Msa0660040:three_prime_UTR |
| AGTTGTCAAACTCAAGTATA+TGG | 0.334020 | 4_3:+70558656 | Msa0660040:three_prime_UTR |
| AGGGAATCTCTTAATGGTTT+GGG | 0.335374 | 4_3:+70556020 | Msa0660040:CDS |
| TAGTCTCGGTCTTTACCTAA+TGG | 0.344955 | 4_3:-70557249 | None:intergenic |
| CCCTGAAAATTGCAGTTTCA+AGG | 0.346144 | 4_3:-70556583 | None:intergenic |
| TACATTCAGGCCATGGGAGC+CGG | 0.353657 | 4_3:+70558689 | Msa0660040:three_prime_UTR |
| TCTGCTGGTTCTTTCAGCTC+TGG | 0.357652 | 4_3:-70557042 | None:intergenic |
| AAAACAATTATCGTAGTATA+TGG | 0.357958 | 4_3:+70557504 | Msa0660040:CDS |
| TGGGAATGGCCATGGGAGCC+GGG | 0.359628 | 4_3:+70558629 | Msa0660040:three_prime_UTR |
| TAGGGAATCTCTTAATGGTT+TGG | 0.359730 | 4_3:+70556019 | Msa0660040:CDS |
| GTTCTTTCAGCTCTGGATCC+AGG | 0.367177 | 4_3:-70557035 | None:intergenic |
| AGTCTCGGTCTTTACCTAAT+GGG | 0.370559 | 4_3:-70557248 | None:intergenic |
| TGGAAGAATTTGCTACATTC+AGG | 0.372689 | 4_3:+70558676 | Msa0660040:three_prime_UTR |
| TCCACTTGTTAACATATTTG+AGG | 0.381698 | 4_3:-70558197 | None:intergenic |
| ACACTTGTCGCCGTACTCTT+TGG | 0.383626 | 4_3:+70556071 | Msa0660040:CDS |
| ATATCCCATTGATGATCTAT+TGG | 0.390572 | 4_3:+70555918 | Msa0660040:CDS |
| TGTGATGCGCATTGATTGTT+TGG | 0.391789 | 4_3:+70558488 | Msa0660040:three_prime_UTR |
| CCTATTAGTAGAAGCCCATT+AGG | 0.393334 | 4_3:+70557234 | Msa0660040:CDS |
| ATTGAACAGCGGCAGGAACT+TGG | 0.404109 | 4_3:+70556623 | Msa0660040:CDS |
| CATGTGGGGAAGAAAATAAA+TGG | 0.406416 | 4_3:+70556791 | Msa0660040:CDS |
| GGAACATTAAAGTCTCTTGA+TGG | 0.407958 | 4_3:-70555985 | None:intergenic |
| GAAGGACGATCAGTGAAAAC+AGG | 0.410514 | 4_3:-70555961 | None:intergenic |
| GAACCGCATTCCCATCCTTA+TGG | 0.425234 | 4_3:-70556116 | None:intergenic |
| TGATCAATATTCCTCAATTA+CGG | 0.425945 | 4_3:+70556471 | Msa0660040:CDS |
| TGAAAATGCAATCTGCCATA+AGG | 0.432122 | 4_3:+70556101 | Msa0660040:CDS |
| TCAGTGAAAACAGGGTCATC+TGG | 0.436755 | 4_3:-70555952 | None:intergenic |
| CTTCACCAATAGATCATCAA+TGG | 0.438495 | 4_3:-70555923 | None:intergenic |
| GACACTATGCCCGGCTCCCA+TGG | 0.440478 | 4_3:-70558699 | None:intergenic |
| GGGAAGCTACAATATGAGTA+TGG | 0.441691 | 4_3:+70558547 | Msa0660040:three_prime_UTR |
| AGGCATCGAAGAATCTCATT+AGG | 0.444111 | 4_3:+70558604 | Msa0660040:three_prime_UTR |
| CTATGAAGGAACCATAAAAC+GGG | 0.456689 | 4_3:+70556496 | Msa0660040:CDS |
| ATTGCAAGGGTGAGCGGGAA+AGG | 0.457819 | 4_3:+70557462 | Msa0660040:CDS |
| TTGAACAGCGGCAGGAACTT+GGG | 0.459272 | 4_3:+70556624 | Msa0660040:CDS |
| CTTGCACCATTCTTCAATCA+TGG | 0.459834 | 4_3:+70558348 | Msa0660040:three_prime_UTR |
| ACATTCAGGCCATGGGAGCC+GGG | 0.464175 | 4_3:+70558690 | Msa0660040:three_prime_UTR |
| TCACAACCACAATATTGAAA+AGG | 0.466513 | 4_3:-70558464 | None:intergenic |
| GCTGTAGTATCCCCACTCCT+TGG | 0.470462 | 4_3:-70557328 | None:intergenic |
| CGAAGAATCTCATTAGGAAT+GGG | 0.476161 | 4_3:+70558610 | Msa0660040:three_prime_UTR |
| GTGATAGCTTGATGCATTGA+TGG | 0.480731 | 4_3:+70557430 | Msa0660040:intron |
| TCAAAATCTTCCAAAGAGTA+CGG | 0.481765 | 4_3:-70556081 | None:intergenic |
| ACTATGAAGGAACCATAAAA+CGG | 0.481937 | 4_3:+70556495 | Msa0660040:CDS |
| GAAGATTAACAATGGAAGCT+TGG | 0.482147 | 4_3:+70558222 | Msa0660040:exon |
| TAAGATTTCTAGTTTAGCAT+TGG | 0.483800 | 4_3:-70556540 | None:intergenic |
| CAACTATGCCCCGGCTCCCA+TGG | 0.485279 | 4_3:-70558638 | None:intergenic |
| CCTTCATAGTGCCGTAATTG+AGG | 0.488180 | 4_3:-70556482 | None:intergenic |
| ATGTTCCAATGCATTGTGTA+GGG | 0.490919 | 4_3:+70556001 | Msa0660040:CDS |
| TGAGTTTATTGAACAGCGGC+AGG | 0.492835 | 4_3:+70556616 | Msa0660040:CDS |
| GTAAAGACCGAGACTACAAT+AGG | 0.494001 | 4_3:+70557256 | Msa0660040:CDS |
| ATGGAGAGATAGAATCATCT+AGG | 0.496560 | 4_3:+70556810 | Msa0660040:CDS |
| TTTCTACCATGATTGAAGAA+TGG | 0.497317 | 4_3:-70558354 | None:intergenic |
| GGGAATGGCCATGGGAGCCG+GGG | 0.497809 | 4_3:+70558630 | Msa0660040:three_prime_UTR |
| CCTGAAAATTGCAGTTTCAA+GGG | 0.498613 | 4_3:-70556582 | None:intergenic |
| TTGCAAGGGTGAGCGGGAAA+GGG | 0.502818 | 4_3:+70557463 | Msa0660040:CDS |
| TCCTCAAATATGTTAACAAG+TGG | 0.504252 | 4_3:+70558196 | Msa0660040:CDS |
| GGAACTTGGGGCCTCTAAAA+GGG | 0.507903 | 4_3:+70556637 | Msa0660040:CDS |
| ATTAAACAAAATGGACATGT+GGG | 0.508941 | 4_3:+70556776 | Msa0660040:CDS |
| TATTGGTGGTTCCGTCGCGA+TGG | 0.509839 | 4_3:+70557279 | Msa0660040:CDS |
| ACTAGAAATCTTATGTGAGT+TGG | 0.511639 | 4_3:+70556550 | Msa0660040:CDS |
| ACCGAGACTACAATAGGTAT+TGG | 0.512131 | 4_3:+70557262 | Msa0660040:CDS |
| AATGTTCCAATGCATTGTGT+AGG | 0.514690 | 4_3:+70556000 | Msa0660040:CDS |
| ATTAGGAATGGGAATGGCCA+TGG | 0.515934 | 4_3:+70558621 | Msa0660040:three_prime_UTR |
| TCTATACTATTCTTCTCTGA+TGG | 0.516611 | 4_3:-70557093 | None:intergenic |
| ACCAATACCTATTGTAGTCT+CGG | 0.518556 | 4_3:-70557263 | None:intergenic |
| ATGACGAGTCTGTGCTTCGA+AGG | 0.520616 | 4_3:+70558127 | Msa0660040:CDS |
| TCGAAGAATCTCATTAGGAA+TGG | 0.523051 | 4_3:+70558609 | Msa0660040:three_prime_UTR |
| AAGCTGACTCAGAAAGCAAT+GGG | 0.525222 | 4_3:+70556711 | Msa0660040:CDS |
| GCTGAATTGCAAGGGTGAGC+GGG | 0.525450 | 4_3:+70557457 | Msa0660040:CDS |
| AAAACAGGGTCATCTGGACT+AGG | 0.526194 | 4_3:-70555946 | None:intergenic |
| CCTCAATTACGGCACTATGA+AGG | 0.526729 | 4_3:+70556482 | Msa0660040:CDS |
| AATTTGCTACATTCAGGCCA+TGG | 0.527606 | 4_3:+70558682 | Msa0660040:three_prime_UTR |
| GGTGGTTCCGTCGCGATGGG+AGG | 0.530125 | 4_3:+70557283 | Msa0660040:CDS |
| TGTAGTGGAGACCCTTCGAC+TGG | 0.530760 | 4_3:+70558525 | Msa0660040:three_prime_UTR |
| GTTTAGCATTGGCATCTACA+AGG | 0.531441 | 4_3:-70556529 | None:intergenic |
| ATCTAGGCAAGACAATTCAC+TGG | 0.533178 | 4_3:+70556826 | Msa0660040:CDS |
| ATTGGTGGTTCCGTCGCGAT+GGG | 0.534850 | 4_3:+70557280 | Msa0660040:CDS |
| TTCACCAATAGATCATCAAT+GGG | 0.536238 | 4_3:-70555922 | None:intergenic |
| AGAATACTTTGAACGAGAGA+TGG | 0.537615 | 4_3:+70557203 | Msa0660040:CDS |
| CGAGTTCTTATCAAAGATGA+CGG | 0.542545 | 4_3:+70556168 | Msa0660040:CDS |
| TGGAAAAGAATTATCCAGAA+AGG | 0.543257 | 4_3:+70557068 | Msa0660040:CDS |
| CGCTGAATTGCAAGGGTGAG+CGG | 0.545656 | 4_3:+70557456 | Msa0660040:CDS |
| AAGCTGTGACTCCAAGGAGT+GGG | 0.547750 | 4_3:+70557317 | Msa0660040:CDS |
| CATTAAACAAAATGGACATG+TGG | 0.548399 | 4_3:+70556775 | Msa0660040:CDS |
| AACATATTTGAGGAAAGCAC+TGG | 0.552278 | 4_3:-70558187 | None:intergenic |
| ATACTACAGCAGCAAGGAAG+AGG | 0.554283 | 4_3:+70557341 | Msa0660040:CDS |
| ATAGAAACATAAGCAAATCA+GGG | 0.555379 | 4_3:-70558580 | None:intergenic |
| GAAGAATAGTATAGAGCAGA+GGG | 0.559232 | 4_3:+70557101 | Msa0660040:CDS |
| AGATTCCCTACACAATGCAT+TGG | 0.560023 | 4_3:-70556006 | None:intergenic |
| TAGAAACATAAGCAAATCAG+GGG | 0.560945 | 4_3:-70558579 | None:intergenic |
| AGGGAACAAGCACTAGAAGA+AGG | 0.564376 | 4_3:+70556656 | Msa0660040:CDS |
| TCATCAATGGGATATTTGAC+TGG | 0.564513 | 4_3:-70555910 | None:intergenic |
| GTTGTGTGCTGATATTGTAG+TGG | 0.564961 | 4_3:+70558510 | Msa0660040:three_prime_UTR |
| TGAACAGCGGCAGGAACTTG+GGG | 0.565350 | 4_3:+70556625 | Msa0660040:CDS |
| TGTTGAAAGCTGTGACTCCA+AGG | 0.565461 | 4_3:+70557311 | Msa0660040:CDS |
| AATGCAATCTGCCATAAGGA+TGG | 0.567728 | 4_3:+70556105 | Msa0660040:CDS |
| ACAGAAACGAAGTGTGAAGA+AGG | 0.568103 | 4_3:+70556209 | Msa0660040:CDS |
| ATTGTAGCTTCCCCAGTCGA+AGG | 0.568977 | 4_3:-70558537 | None:intergenic |
| TATTTGAGGAAAGCACTGGC+AGG | 0.571825 | 4_3:-70558183 | None:intergenic |
| GATGGGTTCGCTGAATTGCA+AGG | 0.572638 | 4_3:+70557448 | Msa0660040:CDS |
| TGAGTTTGACAACTATGCCC+CGG | 0.576198 | 4_3:-70558647 | None:intergenic |
| AAAGCTGACTCAGAAAGCAA+TGG | 0.580758 | 4_3:+70556710 | Msa0660040:CDS |
| ATTTGCTACATTCAGGCCAT+GGG | 0.581130 | 4_3:+70558683 | Msa0660040:three_prime_UTR |
| TTAAAGTCTCTTGATGGAGA+AGG | 0.586141 | 4_3:-70555979 | None:intergenic |
| GTAGTGGAGACCCTTCGACT+GGG | 0.587447 | 4_3:+70558526 | Msa0660040:three_prime_UTR |
| ATGCAATCTGCCATAAGGAT+GGG | 0.588555 | 4_3:+70556106 | Msa0660040:CDS |
| TGATAGCTTGATGCATTGAT+GGG | 0.592407 | 4_3:+70557431 | Msa0660040:intron |
| TTAGGAATGGGAATGGCCAT+GGG | 0.592484 | 4_3:+70558622 | Msa0660040:three_prime_UTR |
| TCGTGTTCGAGCTCCACCTA+GGG | 0.599113 | 4_3:+70558155 | Msa0660040:CDS |
| AATCTCATTAGGAATGGGAA+TGG | 0.604840 | 4_3:+70558615 | Msa0660040:three_prime_UTR |
| GAGACTACAATAGGTATTGG+TGG | 0.613718 | 4_3:+70557265 | Msa0660040:CDS |
| TTGTAGCTTCCCCAGTCGAA+GGG | 0.618968 | 4_3:-70558536 | None:intergenic |
| AGAAGAATAGTATAGAGCAG+AGG | 0.620057 | 4_3:+70557100 | Msa0660040:CDS |
| AGTGGAAAGAAGATTAACAA+TGG | 0.620868 | 4_3:+70558214 | Msa0660040:exon |
| AGAACTGCAGAAAAGATCAA+AGG | 0.621791 | 4_3:+70558083 | Msa0660040:CDS |
| AAAGCTGTGACTCCAAGGAG+TGG | 0.624462 | 4_3:+70557316 | Msa0660040:CDS |
| CTCGTGTTCGAGCTCCACCT+AGG | 0.625716 | 4_3:+70558154 | Msa0660040:CDS |
| TCCAGAACATGAAGAACACA+AGG | 0.629982 | 4_3:+70555882 | None:intergenic |
| TAGTGGAGACCCTTCGACTG+GGG | 0.635538 | 4_3:+70558527 | Msa0660040:three_prime_UTR |
| CTGCCATAAGGATGGGAATG+CGG | 0.638650 | 4_3:+70556113 | Msa0660040:CDS |
| AGCTGTGACTCCAAGGAGTG+GGG | 0.641289 | 4_3:+70557318 | Msa0660040:CDS |
| AGCAATGGGAATCATCTCAA+CGG | 0.650870 | 4_3:+70556725 | Msa0660040:CDS |
| CAAATATCCTCCCATCGCGA+CGG | 0.651308 | 4_3:-70557290 | None:intergenic |
| GTGGGGATACTACAGCAGCA+AGG | 0.659358 | 4_3:+70557335 | Msa0660040:CDS |
| ATGGGTTCGCTGAATTGCAA+GGG | 0.662156 | 4_3:+70557449 | Msa0660040:CDS |
| TCTAGGCAAGACAATTCACT+GGG | 0.669591 | 4_3:+70556827 | Msa0660040:CDS |
| TGGATGAGTTTATTGAACAG+CGG | 0.670070 | 4_3:+70556612 | Msa0660040:CDS |
| AAGGACGATCAGTGAAAACA+GGG | 0.691019 | 4_3:-70555960 | None:intergenic |
| GTGCAGCATGAGATTCGACA+AGG | 0.695395 | 4_3:-70556140 | None:intergenic |
| TTAAACAAAATGGACATGTG+GGG | 0.696809 | 4_3:+70556777 | Msa0660040:CDS |
| AGAAACATAAGCAAATCAGG+GGG | 0.707791 | 4_3:-70558578 | None:intergenic |
| TATGAAGGAACCATAAAACG+GGG | 0.757617 | 4_3:+70556497 | Msa0660040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAAAAAAAAAAAAAA+AGG | - | chr4_3:70558394-70558413 | None:intergenic | 0.0% |
| !!! | TATATTTTCTAATTTTATGT+TGG | + | chr4_3:70557402-70557421 | Msa0660040:intron | 10.0% |
| !! | ATAAAAATAAATGAAATCTA+AGG | + | chr4_3:70557686-70557705 | Msa0660040:intron | 10.0% |
| !! | GTCAAATAAAAAATAGTAAT+AGG | - | chr4_3:70556382-70556401 | None:intergenic | 15.0% |
| !!! | TATCTGAAATAAAAATGAAT+GGG | - | chr4_3:70556408-70556427 | None:intergenic | 15.0% |
| !!! | TTATCTGAAATAAAAATGAA+TGG | - | chr4_3:70556409-70556428 | None:intergenic | 15.0% |
| !!! | ATTTTTATTTCAGATAACAA+TGG | + | chr4_3:70556412-70556431 | Msa0660040:intron | 15.0% |
| !! | AATAATCACATTAAACAAAA+TGG | + | chr4_3:70556767-70556786 | Msa0660040:CDS | 15.0% |
| !! | TCAAATACAAATTGTTATAA+AGG | - | chr4_3:70557559-70557578 | None:intergenic | 15.0% |
| !!! | TTCAAACTTTAAAGTAAAAA+TGG | - | chr4_3:70557663-70557682 | None:intergenic | 15.0% |
| !! | ATTAATAAAGTGAATATAGA+GGG | - | chr4_3:70557984-70558003 | None:intergenic | 15.0% |
| !! | AATTAATAAAGTGAATATAG+AGG | - | chr4_3:70557985-70558004 | None:intergenic | 15.0% |
| !!! | TTTTATAAAACATGTTTTCT+AGG | + | chr4_3:70558406-70558425 | Msa0660040:three_prime_UTR | 15.0% |
| !!! | TAAAAGGTAAGGTTTTATTA+AGG | + | chr4_3:70556850-70556869 | Msa0660040:intron | 20.0% |
| !!! | AAAAGGTAAGGTTTTATTAA+GGG | + | chr4_3:70556851-70556870 | Msa0660040:intron | 20.0% |
| !! | AAAACAATTATCGTAGTATA+TGG | + | chr4_3:70557504-70557523 | Msa0660040:CDS | 20.0% |
| !!! | AAATGTCTTAGTTTTAAACT+TGG | + | chr4_3:70557595-70557614 | Msa0660040:intron | 20.0% |
| !! | GATAAAAAGCTAATTTATAG+TGG | + | chr4_3:70557793-70557812 | Msa0660040:intron | 20.0% |
| !!! | GATTTTATCAAAAAGAAAGT+TGG | + | chr4_3:70557879-70557898 | Msa0660040:intron | 20.0% |
| !! | TAGCTTATTTAACAAACATA+TGG | + | chr4_3:70557925-70557944 | Msa0660040:intron | 20.0% |
| ! | AGACTAAGAGTCTAATAAAA+AGG | - | chr4_3:70556258-70556277 | None:intergenic | 25.0% |
| ! | TGAAATAAAAATGAATGGGA+TGG | - | chr4_3:70556404-70556423 | None:intergenic | 25.0% |
| ! | TGATCAATATTCCTCAATTA+CGG | + | chr4_3:70556471-70556490 | Msa0660040:CDS | 25.0% |
| !!! | TAAGATTTCTAGTTTAGCAT+TGG | - | chr4_3:70556543-70556562 | None:intergenic | 25.0% |
| ! | ATTAAACAAAATGGACATGT+GGG | + | chr4_3:70556776-70556795 | Msa0660040:CDS | 25.0% |
| ! | TGAATTTCAAGAGTGAAAAA+AGG | - | chr4_3:70556962-70556981 | None:intergenic | 25.0% |
| !! | ATAAAACATGTTTTCTAGGT+AGG | + | chr4_3:70558410-70558429 | Msa0660040:three_prime_UTR | 25.0% |
| ! | ATAGAAACATAAGCAAATCA+GGG | - | chr4_3:70558583-70558602 | None:intergenic | 25.0% |
| ! | AATAGAAACATAAGCAAATC+AGG | - | chr4_3:70558584-70558603 | None:intergenic | 25.0% |
| !! | GATTTGCTTATGTTTCTATT+AGG | + | chr4_3:70558584-70558603 | Msa0660040:three_prime_UTR | 25.0% |
| ! | ATATCCCATTGATGATCTAT+TGG | + | chr4_3:70555918-70555937 | Msa0660040:CDS | 30.0% |
| TTCACCAATAGATCATCAAT+GGG | - | chr4_3:70555925-70555944 | None:intergenic | 30.0% | |
| ! | TGGGATTTTTGTACTTCTTT+TGG | + | chr4_3:70556039-70556058 | Msa0660040:CDS | 30.0% |
| TCAAAATCTTCCAAAGAGTA+CGG | - | chr4_3:70556084-70556103 | None:intergenic | 30.0% | |
| AGGATTACGAATAAGTTAGA+TGG | - | chr4_3:70556238-70556257 | None:intergenic | 30.0% | |
| TTCAGATAACAATGGTTAAC+TGG | + | chr4_3:70556420-70556439 | Msa0660040:intron | 30.0% | |
| ACTATGAAGGAACCATAAAA+CGG | + | chr4_3:70556495-70556514 | Msa0660040:CDS | 30.0% | |
| ACTAGAAATCTTATGTGAGT+TGG | + | chr4_3:70556550-70556569 | Msa0660040:CDS | 30.0% | |
| CATTAAACAAAATGGACATG+TGG | + | chr4_3:70556775-70556794 | Msa0660040:CDS | 30.0% | |
| TTAAACAAAATGGACATGTG+GGG | + | chr4_3:70556777-70556796 | Msa0660040:CDS | 30.0% | |
| TTGAAATTCAATTTGCAGTG+AGG | + | chr4_3:70556972-70556991 | Msa0660040:intron | 30.0% | |
| ! | AATTCTTTTCCATTTTCTGC+TGG | - | chr4_3:70557060-70557079 | None:intergenic | 30.0% |
| TGGAAAAGAATTATCCAGAA+AGG | + | chr4_3:70557068-70557087 | Msa0660040:CDS | 30.0% | |
| TCTATACTATTCTTCTCTGA+TGG | - | chr4_3:70557096-70557115 | None:intergenic | 30.0% | |
| AACAGACAACAATATAAGCA+AGG | - | chr4_3:70557144-70557163 | None:intergenic | 30.0% | |
| AAACAAAATGCAAACATAGC+AGG | - | chr4_3:70557383-70557402 | None:intergenic | 30.0% | |
| AAAAAATCTCCAGAAGTCAA+GGG | - | chr4_3:70558033-70558052 | None:intergenic | 30.0% | |
| TCCTCAAATATGTTAACAAG+TGG | + | chr4_3:70558196-70558215 | Msa0660040:CDS | 30.0% | |
| ! | TCCACTTGTTAACATATTTG+AGG | - | chr4_3:70558200-70558219 | None:intergenic | 30.0% |
| AGTGGAAAGAAGATTAACAA+TGG | + | chr4_3:70558214-70558233 | Msa0660040:exon | 30.0% | |
| !! | GGAATTTTAAGAAACTGAGT+TGG | + | chr4_3:70558243-70558262 | Msa0660040:three_prime_UTR | 30.0% |
| !! | ATAGCGTTGAATGTAGTTTT+TGG | + | chr4_3:70558269-70558288 | Msa0660040:three_prime_UTR | 30.0% |
| !! | TGTAGTTTTTGGATCCATTT+TGG | + | chr4_3:70558280-70558299 | Msa0660040:three_prime_UTR | 30.0% |
| TTTCTACCATGATTGAAGAA+TGG | - | chr4_3:70558357-70558376 | None:intergenic | 30.0% | |
| TCACAACCACAATATTGAAA+AGG | - | chr4_3:70558467-70558486 | None:intergenic | 30.0% | |
| TAGAAACATAAGCAAATCAG+GGG | - | chr4_3:70558582-70558601 | None:intergenic | 30.0% | |
| AGTTGTCAAACTCAAGTATA+TGG | + | chr4_3:70558656-70558675 | Msa0660040:three_prime_UTR | 30.0% | |
| TCATCAATGGGATATTTGAC+TGG | - | chr4_3:70555913-70555932 | None:intergenic | 35.0% | |
| CTTCACCAATAGATCATCAA+TGG | - | chr4_3:70555926-70555945 | None:intergenic | 35.0% | |
| TTAAAGTCTCTTGATGGAGA+AGG | - | chr4_3:70555982-70556001 | None:intergenic | 35.0% | |
| GGAACATTAAAGTCTCTTGA+TGG | - | chr4_3:70555988-70556007 | None:intergenic | 35.0% | |
| AATGTTCCAATGCATTGTGT+AGG | + | chr4_3:70556000-70556019 | Msa0660040:CDS | 35.0% | |
| ATGTTCCAATGCATTGTGTA+GGG | + | chr4_3:70556001-70556020 | Msa0660040:CDS | 35.0% | |
| TTGTGTAGGGAATCTCTTAA+TGG | + | chr4_3:70556014-70556033 | Msa0660040:CDS | 35.0% | |
| TAGGGAATCTCTTAATGGTT+TGG | + | chr4_3:70556019-70556038 | Msa0660040:CDS | 35.0% | |
| AGGGAATCTCTTAATGGTTT+GGG | + | chr4_3:70556020-70556039 | Msa0660040:CDS | 35.0% | |
| TGAAAATGCAATCTGCCATA+AGG | + | chr4_3:70556101-70556120 | Msa0660040:CDS | 35.0% | |
| CGAGTTCTTATCAAAGATGA+CGG | + | chr4_3:70556168-70556187 | Msa0660040:CDS | 35.0% | |
| AAAAGCCATCTCATGAAATC+TGG | - | chr4_3:70556298-70556317 | None:intergenic | 35.0% | |
| AGCAACAAGAAAGATTCAAC+TGG | - | chr4_3:70556322-70556341 | None:intergenic | 35.0% | |
| GAATCTTTCTTGTTGCTATC+TGG | + | chr4_3:70556325-70556344 | Msa0660040:intron | 35.0% | |
| CATCAATTAAGCAGTCACAA+AGG | - | chr4_3:70556354-70556373 | None:intergenic | 35.0% | |
| CTATGAAGGAACCATAAAAC+GGG | + | chr4_3:70556496-70556515 | Msa0660040:CDS | 35.0% | |
| TATGAAGGAACCATAAAACG+GGG | + | chr4_3:70556497-70556516 | Msa0660040:CDS | 35.0% | |
| CCTGAAAATTGCAGTTTCAA+GGG | - | chr4_3:70556585-70556604 | None:intergenic | 35.0% | |
| ! | CCTTGAAACTGCAATTTTCA+GGG | + | chr4_3:70556583-70556602 | Msa0660040:CDS | 35.0% |
| !! | TGCAATTTTCAGGGAAAAGT+TGG | + | chr4_3:70556592-70556611 | Msa0660040:CDS | 35.0% |
| TGGATGAGTTTATTGAACAG+CGG | + | chr4_3:70556612-70556631 | Msa0660040:CDS | 35.0% | |
| AGAGAAGAGAACAAAAAGAG+AGG | + | chr4_3:70556684-70556703 | Msa0660040:CDS | 35.0% | |
| CATGTGGGGAAGAAAATAAA+TGG | + | chr4_3:70556791-70556810 | Msa0660040:CDS | 35.0% | |
| ATGGAGAGATAGAATCATCT+AGG | + | chr4_3:70556810-70556829 | Msa0660040:CDS | 35.0% | |
| AAGACAATTCACTGGGTAAA+AGG | + | chr4_3:70556834-70556853 | Msa0660040:CDS | 35.0% | |
| AATTCACTGGGTAAAAGGTA+AGG | + | chr4_3:70556839-70556858 | Msa0660040:intron | 35.0% | |
| AAAACAGACTCCAAAAAACC+TGG | + | chr4_3:70557017-70557036 | Msa0660040:CDS | 35.0% | |
| AGAAGAATAGTATAGAGCAG+AGG | + | chr4_3:70557100-70557119 | Msa0660040:CDS | 35.0% | |
| GAAGAATAGTATAGAGCAGA+GGG | + | chr4_3:70557101-70557120 | Msa0660040:CDS | 35.0% | |
| CAACAATATAAGCAAGGAGA+TGG | - | chr4_3:70557138-70557157 | None:intergenic | 35.0% | |
| AGAATACTTTGAACGAGAGA+TGG | + | chr4_3:70557203-70557222 | Msa0660040:CDS | 35.0% | |
| ACCAATACCTATTGTAGTCT+CGG | - | chr4_3:70557266-70557285 | None:intergenic | 35.0% | |
| ! | TGATAGCTTGATGCATTGAT+GGG | + | chr4_3:70557431-70557450 | Msa0660040:intron | 35.0% |
| AGTGACATATACATGCTTCT+CGG | + | chr4_3:70557636-70557655 | Msa0660040:intron | 35.0% | |
| GCTAATTTATAGTGGTGTAG+AGG | + | chr4_3:70557801-70557820 | Msa0660040:intron | 35.0% | |
| AATTTATAGTGGTGTAGAGG+AGG | + | chr4_3:70557804-70557823 | Msa0660040:intron | 35.0% | |
| ATTTATAGTGGTGTAGAGGA+GGG | + | chr4_3:70557805-70557824 | Msa0660040:intron | 35.0% | |
| AAAAATCTCCAGAAGTCAAG+GGG | - | chr4_3:70558032-70558051 | None:intergenic | 35.0% | |
| CAAAAAATCTCCAGAAGTCA+AGG | - | chr4_3:70558034-70558053 | None:intergenic | 35.0% | |
| AGAACTGCAGAAAAGATCAA+AGG | + | chr4_3:70558083-70558102 | Msa0660040:CDS | 35.0% | |
| ! | AACATATTTGAGGAAAGCAC+TGG | - | chr4_3:70558190-70558209 | None:intergenic | 35.0% |
| GAAGATTAACAATGGAAGCT+TGG | + | chr4_3:70558222-70558241 | Msa0660040:exon | 35.0% | |
| ! | TGCAAGCCTTTTCAATATTG+TGG | + | chr4_3:70558458-70558477 | Msa0660040:three_prime_UTR | 35.0% |
| AGAAACATAAGCAAATCAGG+GGG | - | chr4_3:70558581-70558600 | None:intergenic | 35.0% | |
| TCGAAGAATCTCATTAGGAA+TGG | + | chr4_3:70558609-70558628 | Msa0660040:three_prime_UTR | 35.0% | |
| CGAAGAATCTCATTAGGAAT+GGG | + | chr4_3:70558610-70558629 | Msa0660040:three_prime_UTR | 35.0% | |
| AATCTCATTAGGAATGGGAA+TGG | + | chr4_3:70558615-70558634 | Msa0660040:three_prime_UTR | 35.0% | |
| !! | TGGAAGAATTTGCTACATTC+AGG | + | chr4_3:70558676-70558695 | Msa0660040:three_prime_UTR | 35.0% |
| AAGGACGATCAGTGAAAACA+GGG | - | chr4_3:70555963-70555982 | None:intergenic | 40.0% | |
| AGATTCCCTACACAATGCAT+TGG | - | chr4_3:70556009-70556028 | None:intergenic | 40.0% | |
| AATGCAATCTGCCATAAGGA+TGG | + | chr4_3:70556105-70556124 | Msa0660040:CDS | 40.0% | |
| ATGCAATCTGCCATAAGGAT+GGG | + | chr4_3:70556106-70556125 | Msa0660040:CDS | 40.0% | |
| ACAGAAACGAAGTGTGAAGA+AGG | + | chr4_3:70556209-70556228 | Msa0660040:CDS | 40.0% | |
| GATGTCCAGATTTCATGAGA+TGG | + | chr4_3:70556290-70556309 | Msa0660040:intron | 40.0% | |
| ! | GCAATAATGTCCCCGTTTTA+TGG | - | chr4_3:70556510-70556529 | None:intergenic | 40.0% |
| !! | GTTTAGCATTGGCATCTACA+AGG | - | chr4_3:70556532-70556551 | None:intergenic | 40.0% |
| ! | CCCTTGAAACTGCAATTTTC+AGG | + | chr4_3:70556582-70556601 | Msa0660040:CDS | 40.0% |
| CCCTGAAAATTGCAGTTTCA+AGG | - | chr4_3:70556586-70556605 | None:intergenic | 40.0% | |
| ! | TAGTGCTTGTTCCCTTTTAG+AGG | - | chr4_3:70556651-70556670 | None:intergenic | 40.0% |
| ! | AAAGCTGACTCAGAAAGCAA+TGG | + | chr4_3:70556710-70556729 | Msa0660040:CDS | 40.0% |
| ! | AAGCTGACTCAGAAAGCAAT+GGG | + | chr4_3:70556711-70556730 | Msa0660040:CDS | 40.0% |
| AGCAATGGGAATCATCTCAA+CGG | + | chr4_3:70556725-70556744 | Msa0660040:CDS | 40.0% | |
| ATCTAGGCAAGACAATTCAC+TGG | + | chr4_3:70556826-70556845 | Msa0660040:CDS | 40.0% | |
| TCTAGGCAAGACAATTCACT+GGG | + | chr4_3:70556827-70556846 | Msa0660040:CDS | 40.0% | |
| !!! | TTGGAGTCTGTTTTGAAGCA+GGG | - | chr4_3:70557011-70557030 | None:intergenic | 40.0% |
| !!! | TTTGGAGTCTGTTTTGAAGC+AGG | - | chr4_3:70557012-70557031 | None:intergenic | 40.0% |
| CTGAAAGAACCAGCAGAAAA+TGG | + | chr4_3:70557048-70557067 | Msa0660040:CDS | 40.0% | |
| !! | CCTAATGGGCTTCTACTAAT+AGG | - | chr4_3:70557237-70557256 | None:intergenic | 40.0% |
| CCTATTAGTAGAAGCCCATT+AGG | + | chr4_3:70557234-70557253 | Msa0660040:CDS | 40.0% | |
| AGTCTCGGTCTTTACCTAAT+GGG | - | chr4_3:70557251-70557270 | None:intergenic | 40.0% | |
| TAGTCTCGGTCTTTACCTAA+TGG | - | chr4_3:70557252-70557271 | None:intergenic | 40.0% | |
| GTAAAGACCGAGACTACAAT+AGG | + | chr4_3:70557256-70557275 | Msa0660040:CDS | 40.0% | |
| ACCGAGACTACAATAGGTAT+TGG | + | chr4_3:70557262-70557281 | Msa0660040:CDS | 40.0% | |
| !! | GAGACTACAATAGGTATTGG+TGG | + | chr4_3:70557265-70557284 | Msa0660040:CDS | 40.0% |
| GTGATAGCTTGATGCATTGA+TGG | + | chr4_3:70557430-70557449 | Msa0660040:intron | 40.0% | |
| GTGACATATACATGCTTCTC+GGG | + | chr4_3:70557637-70557656 | Msa0660040:intron | 40.0% | |
| TAGAATTTACCCTCATCCTC+TGG | + | chr4_3:70557732-70557751 | Msa0660040:intron | 40.0% | |
| TATAGTCAACCAGAGGATGA+GGG | - | chr4_3:70557744-70557763 | None:intergenic | 40.0% | |
| !! | CTGTTTCTATAGTCAACCAG+AGG | - | chr4_3:70557751-70557770 | None:intergenic | 40.0% |
| CTCTGGTTGACTATAGAAAC+AGG | + | chr4_3:70557749-70557768 | Msa0660040:intron | 40.0% | |
| AAAATCTCCAGAAGTCAAGG+GGG | - | chr4_3:70558031-70558050 | None:intergenic | 40.0% | |
| CGCTTGTACATCATCCAAAA+TGG | - | chr4_3:70558297-70558316 | None:intergenic | 40.0% | |
| CTTGCACCATTCTTCAATCA+TGG | + | chr4_3:70558348-70558367 | Msa0660040:three_prime_UTR | 40.0% | |
| !! | TGTGATGCGCATTGATTGTT+TGG | + | chr4_3:70558488-70558507 | Msa0660040:three_prime_UTR | 40.0% |
| ! | GTTGTGTGCTGATATTGTAG+TGG | + | chr4_3:70558510-70558529 | Msa0660040:three_prime_UTR | 40.0% |
| GGGAAGCTACAATATGAGTA+TGG | + | chr4_3:70558547-70558566 | Msa0660040:three_prime_UTR | 40.0% | |
| !! | AGGCATCGAAGAATCTCATT+AGG | + | chr4_3:70558604-70558623 | Msa0660040:three_prime_UTR | 40.0% |
| !! | AATTTGCTACATTCAGGCCA+TGG | + | chr4_3:70558682-70558701 | Msa0660040:three_prime_UTR | 40.0% |
| ! | ATTTGCTACATTCAGGCCAT+GGG | + | chr4_3:70558683-70558702 | Msa0660040:three_prime_UTR | 40.0% |
| AAAACAGGGTCATCTGGACT+AGG | - | chr4_3:70555949-70555968 | None:intergenic | 45.0% | |
| TCAGTGAAAACAGGGTCATC+TGG | - | chr4_3:70555955-70555974 | None:intergenic | 45.0% | |
| GAAGGACGATCAGTGAAAAC+AGG | - | chr4_3:70555964-70555983 | None:intergenic | 45.0% | |
| CCTTCATAGTGCCGTAATTG+AGG | - | chr4_3:70556485-70556504 | None:intergenic | 45.0% | |
| CCTCAATTACGGCACTATGA+AGG | + | chr4_3:70556482-70556501 | Msa0660040:CDS | 45.0% | |
| TGAGTTTATTGAACAGCGGC+AGG | + | chr4_3:70556616-70556635 | Msa0660040:CDS | 45.0% | |
| AGGGAACAAGCACTAGAAGA+AGG | + | chr4_3:70556656-70556675 | Msa0660040:CDS | 45.0% | |
| !!! | AGCTCTGGATCCAGGTTTTT+TGG | - | chr4_3:70557030-70557049 | None:intergenic | 45.0% |
| ! | CTTCTCTGATGGATCCTTTC+TGG | - | chr4_3:70557085-70557104 | None:intergenic | 45.0% |
| TGTTGAAAGCTGTGACTCCA+AGG | + | chr4_3:70557311-70557330 | Msa0660040:CDS | 45.0% | |
| ATACTACAGCAGCAAGGAAG+AGG | + | chr4_3:70557341-70557360 | Msa0660040:CDS | 45.0% | |
| ATGGGTTCGCTGAATTGCAA+GGG | + | chr4_3:70557449-70557468 | Msa0660040:CDS | 45.0% | |
| !! | AAGGGCACTGCAAAAACAAC+TGG | + | chr4_3:70557481-70557500 | Msa0660040:CDS | 45.0% |
| CTATAGTCAACCAGAGGATG+AGG | - | chr4_3:70557745-70557764 | None:intergenic | 45.0% | |
| TTATTACCCCCCTTGACTTC+TGG | + | chr4_3:70558021-70558040 | Msa0660040:intron | 45.0% | |
| AAATCTCCAGAAGTCAAGGG+GGG | - | chr4_3:70558030-70558049 | None:intergenic | 45.0% | |
| !! | TATTTGAGGAAAGCACTGGC+AGG | - | chr4_3:70558186-70558205 | None:intergenic | 45.0% |
| ATTAGGAATGGGAATGGCCA+TGG | + | chr4_3:70558621-70558640 | Msa0660040:three_prime_UTR | 45.0% | |
| TTAGGAATGGGAATGGCCAT+GGG | + | chr4_3:70558622-70558641 | Msa0660040:three_prime_UTR | 45.0% | |
| TGAGTTTGACAACTATGCCC+CGG | - | chr4_3:70558650-70558669 | None:intergenic | 45.0% | |
| ACACTTGTCGCCGTACTCTT+TGG | + | chr4_3:70556071-70556090 | Msa0660040:CDS | 50.0% | |
| CTGCCATAAGGATGGGAATG+CGG | + | chr4_3:70556113-70556132 | Msa0660040:CDS | 50.0% | |
| GAACCGCATTCCCATCCTTA+TGG | - | chr4_3:70556119-70556138 | None:intergenic | 50.0% | |
| GTGCAGCATGAGATTCGACA+AGG | - | chr4_3:70556143-70556162 | None:intergenic | 50.0% | |
| ATTGAACAGCGGCAGGAACT+TGG | + | chr4_3:70556623-70556642 | Msa0660040:CDS | 50.0% | |
| TTGAACAGCGGCAGGAACTT+GGG | + | chr4_3:70556624-70556643 | Msa0660040:CDS | 50.0% | |
| AGGAACTTGGGGCCTCTAAA+AGG | + | chr4_3:70556636-70556655 | Msa0660040:CDS | 50.0% | |
| ! | GGAACTTGGGGCCTCTAAAA+GGG | + | chr4_3:70556637-70556656 | Msa0660040:CDS | 50.0% |
| !! | GTTCTTTCAGCTCTGGATCC+AGG | - | chr4_3:70557038-70557057 | None:intergenic | 50.0% |
| !! | TCTGCTGGTTCTTTCAGCTC+TGG | - | chr4_3:70557045-70557064 | None:intergenic | 50.0% |
| CAAATATCCTCCCATCGCGA+CGG | - | chr4_3:70557293-70557312 | None:intergenic | 50.0% | |
| AAAGCTGTGACTCCAAGGAG+TGG | + | chr4_3:70557316-70557335 | Msa0660040:CDS | 50.0% | |
| AAGCTGTGACTCCAAGGAGT+GGG | + | chr4_3:70557317-70557336 | Msa0660040:CDS | 50.0% | |
| ! | GATGGGTTCGCTGAATTGCA+AGG | + | chr4_3:70557448-70557467 | Msa0660040:CDS | 50.0% |
| ATGACGAGTCTGTGCTTCGA+AGG | + | chr4_3:70558127-70558146 | Msa0660040:CDS | 50.0% | |
| TTGTAGCTTCCCCAGTCGAA+GGG | - | chr4_3:70558539-70558558 | None:intergenic | 50.0% | |
| ATTGTAGCTTCCCCAGTCGA+AGG | - | chr4_3:70558540-70558559 | None:intergenic | 50.0% | |
| TGAACAGCGGCAGGAACTTG+GGG | + | chr4_3:70556625-70556644 | Msa0660040:CDS | 55.0% | |
| ! | TATTGGTGGTTCCGTCGCGA+TGG | + | chr4_3:70557279-70557298 | Msa0660040:CDS | 55.0% |
| ! | ATTGGTGGTTCCGTCGCGAT+GGG | + | chr4_3:70557280-70557299 | Msa0660040:CDS | 55.0% |
| AGCTGTGACTCCAAGGAGTG+GGG | + | chr4_3:70557318-70557337 | Msa0660040:CDS | 55.0% | |
| GCTGTAGTATCCCCACTCCT+TGG | - | chr4_3:70557331-70557350 | None:intergenic | 55.0% | |
| GTGGGGATACTACAGCAGCA+AGG | + | chr4_3:70557335-70557354 | Msa0660040:CDS | 55.0% | |
| CGCTGAATTGCAAGGGTGAG+CGG | + | chr4_3:70557456-70557475 | Msa0660040:CDS | 55.0% | |
| GCTGAATTGCAAGGGTGAGC+GGG | + | chr4_3:70557457-70557476 | Msa0660040:CDS | 55.0% | |
| ATTGCAAGGGTGAGCGGGAA+AGG | + | chr4_3:70557462-70557481 | Msa0660040:CDS | 55.0% | |
| TTGCAAGGGTGAGCGGGAAA+GGG | + | chr4_3:70557463-70557482 | Msa0660040:CDS | 55.0% | |
| TCGTGTTCGAGCTCCACCTA+GGG | + | chr4_3:70558155-70558174 | Msa0660040:CDS | 55.0% | |
| ! | CTGGCAGGATTTTCCCTAGG+TGG | - | chr4_3:70558171-70558190 | None:intergenic | 55.0% |
| !! | GCACTGGCAGGATTTTCCCT+AGG | - | chr4_3:70558174-70558193 | None:intergenic | 55.0% |
| ! | TGTAGTGGAGACCCTTCGAC+TGG | + | chr4_3:70558525-70558544 | Msa0660040:three_prime_UTR | 55.0% |
| ! | GTAGTGGAGACCCTTCGACT+GGG | + | chr4_3:70558526-70558545 | Msa0660040:three_prime_UTR | 55.0% |
| TAGTGGAGACCCTTCGACTG+GGG | + | chr4_3:70558527-70558546 | Msa0660040:three_prime_UTR | 55.0% | |
| TACATTCAGGCCATGGGAGC+CGG | + | chr4_3:70558689-70558708 | Msa0660040:three_prime_UTR | 55.0% | |
| CTCGTGTTCGAGCTCCACCT+AGG | + | chr4_3:70558154-70558173 | Msa0660040:CDS | 60.0% | |
| ATGGGAATGGCCATGGGAGC+CGG | + | chr4_3:70558628-70558647 | Msa0660040:three_prime_UTR | 60.0% | |
| TGGGAATGGCCATGGGAGCC+GGG | + | chr4_3:70558629-70558648 | Msa0660040:three_prime_UTR | 65.0% | |
| CAACTATGCCCCGGCTCCCA+TGG | - | chr4_3:70558641-70558660 | None:intergenic | 65.0% | |
| GGTGGTTCCGTCGCGATGGG+AGG | + | chr4_3:70557283-70557302 | Msa0660040:CDS | 70.0% | |
| GGGAATGGCCATGGGAGCCG+GGG | + | chr4_3:70558630-70558649 | Msa0660040:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 70555886 | 70558712 | 70555886 | ID=Msa0660040;Name=Msa0660040 |
| chr4_3 | mRNA | 70555886 | 70558712 | 70555886 | ID=Msa0660040-mRNA-1;Parent=Msa0660040;Name=Msa0660040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.83|1|1|1|6|482|436 |
| chr4_3 | exon | 70555886 | 70556230 | 70555886 | ID=Msa0660040-mRNA-1:exon:20942;Parent=Msa0660040-mRNA-1 |
| chr4_3 | exon | 70556425 | 70556855 | 70556425 | ID=Msa0660040-mRNA-1:exon:20943;Parent=Msa0660040-mRNA-1 |
| chr4_3 | exon | 70556990 | 70557122 | 70556990 | ID=Msa0660040-mRNA-1:exon:20944;Parent=Msa0660040-mRNA-1 |
| chr4_3 | exon | 70557201 | 70557362 | 70557201 | ID=Msa0660040-mRNA-1:exon:20945;Parent=Msa0660040-mRNA-1 |
| chr4_3 | exon | 70557437 | 70557525 | 70557437 | ID=Msa0660040-mRNA-1:exon:20946;Parent=Msa0660040-mRNA-1 |
| chr4_3 | exon | 70558080 | 70558712 | 70558080 | ID=Msa0660040-mRNA-1:exon:20947;Parent=Msa0660040-mRNA-1 |
| chr4_3 | CDS | 70555886 | 70556230 | 70555886 | ID=Msa0660040-mRNA-1:cds;Parent=Msa0660040-mRNA-1 |
| chr4_3 | CDS | 70556425 | 70556855 | 70556425 | ID=Msa0660040-mRNA-1:cds;Parent=Msa0660040-mRNA-1 |
| chr4_3 | CDS | 70556990 | 70557122 | 70556990 | ID=Msa0660040-mRNA-1:cds;Parent=Msa0660040-mRNA-1 |
| chr4_3 | CDS | 70557201 | 70557362 | 70557201 | ID=Msa0660040-mRNA-1:cds;Parent=Msa0660040-mRNA-1 |
| chr4_3 | CDS | 70557437 | 70557525 | 70557437 | ID=Msa0660040-mRNA-1:cds;Parent=Msa0660040-mRNA-1 |
| chr4_3 | CDS | 70558080 | 70558230 | 70558080 | ID=Msa0660040-mRNA-1:cds;Parent=Msa0660040-mRNA-1 |
| chr4_3 | three_prime_UTR | 70558231 | 70558712 | 70558231 | ID=Msa0660040-mRNA-1:three_prime_utr;Parent=Msa0660040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
