Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567430 | XP_013446808.1 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 2.39e-151 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567430 | sp|Q9SID8|RAH1D_ARATH | 87.923 | 207 | 25 | 0 | 1 | 207 | 1 | 207 | 1.10e-136 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567430 | A0A072U4T2 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 1.14e-151 | 428 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051960 | Msa0567430 | 0.851747 | 7.254363e-61 | -8.615850e-47 |
| Msa0090090 | Msa0567430 | 0.813883 | 2.043298e-51 | -8.615850e-47 |
| Msa0095940 | Msa0567430 | 0.829296 | 5.572312e-55 | -8.615850e-47 |
| Msa0101960 | Msa0567430 | 0.848912 | 4.529997e-60 | -8.615850e-47 |
| Msa0137560 | Msa0567430 | 0.812281 | 4.587173e-51 | -8.615850e-47 |
| Msa0213620 | Msa0567430 | -0.816121 | 6.510007e-52 | -8.615850e-47 |
| Msa0299530 | Msa0567430 | -0.802511 | 5.419343e-49 | -8.615850e-47 |
| Msa0335080 | Msa0567430 | 0.810987 | 8.769470e-51 | -8.615850e-47 |
| Msa0490320 | Msa0567430 | 0.810613 | 1.056785e-50 | -8.615850e-47 |
| Msa0545050 | Msa0567430 | 0.800563 | 1.358989e-48 | -8.615850e-47 |
| Msa0548650 | Msa0567430 | -0.818082 | 2.359664e-52 | -8.615850e-47 |
| Msa0567370 | Msa0567430 | 0.860943 | 1.451629e-63 | -8.615850e-47 |
| Msa0567430 | Msa0567480 | 0.925664 | 1.349375e-90 | -8.615850e-47 |
| Msa0567430 | Msa0567520 | 0.879766 | 9.529783e-70 | -8.615850e-47 |
| Msa0567430 | Msa0574930 | 0.800779 | 1.228018e-48 | -8.615850e-47 |
| Msa0567430 | Msa0599220 | 0.808327 | 3.270800e-50 | -8.615850e-47 |
| Msa0567430 | Msa0703810 | 0.811423 | 7.052579e-51 | -8.615850e-47 |
| Msa0567430 | Msa0744640 | 0.818481 | 1.917033e-52 | -8.615850e-47 |
| Msa0567430 | Msa0775160 | 0.826251 | 3.004979e-54 | -8.615850e-47 |
| Msa0567430 | Msa0833270 | 0.836826 | 7.450727e-57 | -8.615850e-47 |
| Msa0567430 | Msa0838090 | 0.821387 | 4.147868e-53 | -8.615850e-47 |
| Msa0567430 | Msa0841730 | 0.819450 | 1.153990e-52 | -8.615850e-47 |
| Msa0567430 | Msa0859040 | 0.813897 | 2.028639e-51 | -8.615850e-47 |
| Msa0567430 | Msa0870510 | 0.808150 | 3.566781e-50 | -8.615850e-47 |
| Msa0567430 | Msa0966580 | 0.802980 | 4.336649e-49 | -8.615850e-47 |
| Msa0567430 | Msa0966590 | 0.800198 | 1.613116e-48 | -8.615850e-47 |
| Msa0567430 | Msa0968470 | -0.805759 | 1.142867e-49 | -8.615850e-47 |
| Msa0567430 | Msa1031460 | 0.826798 | 2.226375e-54 | -8.615850e-47 |
| Msa0567430 | Msa1070540 | 0.822319 | 2.524974e-53 | -8.615850e-47 |
| Msa0567430 | Msa1080610 | -0.803561 | 3.286564e-49 | -8.615850e-47 |
| Msa0567430 | Msa1080680 | -0.803721 | 3.044747e-49 | -8.615850e-47 |
| Msa0567430 | Msa1082520 | 0.819755 | 9.832589e-53 | -8.615850e-47 |
| Msa0567430 | Msa1082600 | 0.803556 | 3.294480e-49 | -8.615850e-47 |
| Msa0567430 | Msa1101240 | 0.823211 | 1.564577e-53 | -8.615850e-47 |
| Msa0567430 | Msa1126320 | -0.801795 | 7.605488e-49 | -8.615850e-47 |
| Msa0567430 | Msa1157110 | 0.801087 | 1.062447e-48 | -8.615850e-47 |
| Msa0567430 | Msa1167150 | -0.808816 | 2.571061e-50 | -8.615850e-47 |
| Msa0567430 | Msa1181140 | 0.801687 | 8.004956e-49 | -8.615850e-47 |
| Msa0567430 | Msa1256060 | 0.809237 | 2.089792e-50 | -8.615850e-47 |
| Msa0567430 | Msa1296240 | 0.818354 | 2.048046e-52 | -8.615850e-47 |
| Msa0567430 | Msa1298390 | -0.806494 | 8.006095e-50 | -8.615850e-47 |
| Msa0567430 | Msa1379020 | 0.810770 | 9.770938e-51 | -8.615850e-47 |
| Msa0567430 | Msa1404050 | 0.814110 | 1.820154e-51 | -8.615850e-47 |
| Msa0567430 | Msa1407760 | 0.803672 | 3.116703e-49 | -8.615850e-47 |
| Msa0567430 | Msa1407880 | 0.814788 | 1.288726e-51 | -8.615850e-47 |
| Msa0567430 | Msa1415410 | 0.802076 | 6.659093e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567430 | MtrunA17_Chr8g0382221 | 100.000 | 207 | 0 | 0 | 1 | 207 | 1 | 207 | 2.19e-155 | 428 |
| Msa0567430 | MtrunA17_Chr3g0123971 | 93.720 | 207 | 12 | 1 | 1 | 207 | 1 | 206 | 7.88e-143 | 396 |
| Msa0567430 | MtrunA17_Chr5g0400131 | 84.058 | 207 | 33 | 0 | 1 | 207 | 1 | 207 | 1.02e-130 | 365 |
| Msa0567430 | MtrunA17_Chr4g0055081 | 84.541 | 207 | 31 | 1 | 1 | 207 | 1 | 206 | 2.07e-130 | 365 |
| Msa0567430 | MtrunA17_Chr1g0199331 | 47.561 | 164 | 85 | 1 | 9 | 171 | 31 | 194 | 4.94e-51 | 163 |
| Msa0567430 | MtrunA17_Chr5g0433561 | 44.099 | 161 | 90 | 0 | 11 | 171 | 12 | 172 | 2.99e-49 | 159 |
| Msa0567430 | MtrunA17_Chr3g0109721 | 43.478 | 161 | 91 | 0 | 11 | 171 | 12 | 172 | 4.05e-48 | 156 |
| Msa0567430 | MtrunA17_Chr8g0390561 | 44.720 | 161 | 89 | 0 | 11 | 171 | 11 | 171 | 5.57e-47 | 153 |
| Msa0567430 | MtrunA17_Chr8g0349711 | 44.099 | 161 | 90 | 0 | 10 | 170 | 7 | 167 | 1.91e-46 | 152 |
| Msa0567430 | MtrunA17_Chr4g0032201 | 36.408 | 206 | 118 | 3 | 10 | 206 | 13 | 214 | 2.19e-45 | 149 |
| Msa0567430 | MtrunA17_Chr2g0276931 | 39.267 | 191 | 113 | 1 | 10 | 197 | 10 | 200 | 4.42e-45 | 148 |
| Msa0567430 | MtrunA17_Chr8g0349681 | 44.720 | 161 | 89 | 0 | 10 | 170 | 176 | 336 | 1.58e-44 | 155 |
| Msa0567430 | MtrunA17_Chr8g0349681 | 41.358 | 162 | 95 | 0 | 10 | 171 | 14 | 175 | 7.00e-41 | 146 |
| Msa0567430 | MtrunA17_Chr8g0349681 | 42.857 | 161 | 92 | 0 | 10 | 170 | 385 | 545 | 9.89e-41 | 145 |
| Msa0567430 | MtrunA17_Chr8g0351861 | 38.509 | 161 | 99 | 0 | 10 | 170 | 17 | 177 | 1.48e-43 | 145 |
| Msa0567430 | MtrunA17_Chr7g0250531 | 38.000 | 200 | 114 | 2 | 10 | 206 | 9 | 201 | 2.22e-43 | 144 |
| Msa0567430 | MtrunA17_Chr2g0290891 | 38.509 | 161 | 99 | 0 | 10 | 170 | 7 | 167 | 3.09e-43 | 144 |
| Msa0567430 | MtrunA17_Chr6g0458081 | 39.130 | 161 | 98 | 0 | 10 | 170 | 7 | 167 | 4.76e-43 | 143 |
| Msa0567430 | MtrunA17_Chr4g0055651 | 37.056 | 197 | 120 | 1 | 10 | 206 | 9 | 201 | 5.87e-43 | 143 |
| Msa0567430 | MtrunA17_Chr3g0123821 | 34.848 | 198 | 113 | 2 | 10 | 207 | 17 | 198 | 1.28e-42 | 142 |
| Msa0567430 | MtrunA17_Chr3g0112681 | 34.466 | 206 | 123 | 2 | 10 | 206 | 13 | 215 | 2.41e-42 | 142 |
| Msa0567430 | MtrunA17_Chr7g0234201 | 36.139 | 202 | 124 | 2 | 10 | 207 | 14 | 214 | 2.42e-42 | 142 |
| Msa0567430 | MtrunA17_Chr2g0276941 | 39.355 | 155 | 94 | 0 | 10 | 164 | 16 | 170 | 4.63e-42 | 141 |
| Msa0567430 | MtrunA17_Chr8g0335471 | 37.313 | 201 | 115 | 3 | 10 | 206 | 9 | 202 | 5.26e-42 | 140 |
| Msa0567430 | MtrunA17_Chr8g0346421 | 41.401 | 157 | 92 | 0 | 10 | 166 | 27 | 183 | 8.34e-42 | 141 |
| Msa0567430 | MtrunA17_Chr1g0212521 | 37.879 | 198 | 119 | 3 | 11 | 205 | 17 | 213 | 1.03e-41 | 140 |
| Msa0567430 | MtrunA17_Chr1g0174281 | 33.333 | 207 | 127 | 1 | 10 | 205 | 16 | 222 | 1.13e-41 | 140 |
| Msa0567430 | MtrunA17_Chr8g0381841 | 38.961 | 154 | 94 | 0 | 10 | 163 | 18 | 171 | 1.30e-41 | 140 |
| Msa0567430 | MtrunA17_Chr7g0231131 | 34.715 | 193 | 112 | 1 | 10 | 202 | 16 | 194 | 1.93e-41 | 140 |
| Msa0567430 | MtrunA17_Chr4g0030911 | 38.191 | 199 | 117 | 4 | 11 | 205 | 17 | 213 | 2.18e-41 | 139 |
| Msa0567430 | MtrunA17_Chr1g0182321 | 38.071 | 197 | 113 | 3 | 11 | 206 | 17 | 205 | 4.05e-41 | 139 |
| Msa0567430 | MtrunA17_Chr7g0214241 | 34.975 | 203 | 127 | 2 | 10 | 207 | 16 | 218 | 4.93e-41 | 139 |
| Msa0567430 | MtrunA17_Chr6g0482721 | 37.288 | 177 | 109 | 1 | 10 | 186 | 13 | 187 | 6.10e-41 | 138 |
| Msa0567430 | MtrunA17_Chr1g0182301 | 38.071 | 197 | 113 | 3 | 11 | 206 | 17 | 205 | 7.33e-41 | 138 |
| Msa0567430 | MtrunA17_Chr7g0263071 | 43.038 | 158 | 89 | 1 | 11 | 167 | 17 | 174 | 8.16e-41 | 138 |
| Msa0567430 | MtrunA17_Chr7g0275991 | 38.182 | 165 | 98 | 1 | 6 | 166 | 13 | 177 | 2.05e-40 | 137 |
| Msa0567430 | MtrunA17_Chr4g0046261 | 36.306 | 157 | 100 | 0 | 10 | 166 | 14 | 170 | 8.09e-40 | 135 |
| Msa0567430 | MtrunA17_Chr1g0189361 | 38.217 | 157 | 97 | 0 | 10 | 166 | 15 | 171 | 8.42e-40 | 135 |
| Msa0567430 | MtrunA17_Chr2g0315551 | 35.669 | 157 | 101 | 0 | 10 | 166 | 14 | 170 | 1.21e-39 | 135 |
| Msa0567430 | MtrunA17_Chr4g0040781 | 32.124 | 193 | 113 | 1 | 10 | 184 | 14 | 206 | 6.21e-39 | 133 |
| Msa0567430 | MtrunA17_Chr2g0283131 | 36.306 | 157 | 100 | 0 | 10 | 166 | 14 | 170 | 8.31e-39 | 133 |
| Msa0567430 | MtrunA17_Chr2g0327911 | 40.881 | 159 | 92 | 2 | 11 | 167 | 17 | 175 | 1.50e-38 | 132 |
| Msa0567430 | MtrunA17_Chr4g0034871 | 39.024 | 205 | 109 | 6 | 11 | 207 | 10 | 206 | 1.72e-38 | 132 |
| Msa0567430 | MtrunA17_Chr2g0319951 | 34.783 | 161 | 105 | 0 | 10 | 170 | 14 | 174 | 2.51e-38 | 131 |
| Msa0567430 | MtrunA17_Chr2g0325091 | 35.057 | 174 | 113 | 0 | 10 | 183 | 12 | 185 | 4.14e-38 | 131 |
| Msa0567430 | MtrunA17_Chr4g0004661 | 39.216 | 204 | 111 | 4 | 11 | 207 | 66 | 263 | 9.48e-38 | 131 |
| Msa0567430 | MtrunA17_Chr2g0331691 | 38.235 | 204 | 113 | 4 | 11 | 207 | 12 | 209 | 7.93e-37 | 127 |
| Msa0567430 | MtrunA17_Chr1g0180291 | 37.313 | 201 | 116 | 5 | 10 | 205 | 15 | 210 | 1.61e-36 | 127 |
| Msa0567430 | MtrunA17_Chr6g0466301 | 36.538 | 208 | 110 | 6 | 11 | 207 | 10 | 206 | 7.57e-36 | 125 |
| Msa0567430 | MtrunA17_Chr6g0465491 | 36.538 | 208 | 110 | 6 | 11 | 207 | 10 | 206 | 7.57e-36 | 125 |
| Msa0567430 | MtrunA17_Chr1g0201121 | 35.784 | 204 | 118 | 5 | 11 | 207 | 10 | 207 | 7.77e-36 | 125 |
| Msa0567430 | MtrunA17_Chr8g0392931 | 34.375 | 192 | 120 | 2 | 10 | 200 | 15 | 201 | 9.65e-36 | 125 |
| Msa0567430 | MtrunA17_Chr8g0383261 | 33.824 | 204 | 120 | 4 | 11 | 207 | 14 | 209 | 1.12e-35 | 124 |
| Msa0567430 | MtrunA17_Chr8g0384311 | 40.881 | 159 | 91 | 3 | 10 | 166 | 14 | 171 | 1.28e-35 | 124 |
| Msa0567430 | MtrunA17_Chr7g0265001 | 34.483 | 203 | 122 | 4 | 10 | 206 | 17 | 214 | 1.48e-34 | 122 |
| Msa0567430 | MtrunA17_Chr1g0197331 | 37.500 | 200 | 119 | 5 | 10 | 206 | 16 | 212 | 2.65e-34 | 121 |
| Msa0567430 | MtrunA17_Chr3g0130271 | 40.000 | 160 | 92 | 4 | 10 | 166 | 13 | 171 | 1.61e-32 | 116 |
| Msa0567430 | MtrunA17_Chr1g0159481 | 37.736 | 159 | 96 | 3 | 10 | 166 | 18 | 175 | 4.99e-32 | 115 |
| Msa0567430 | MtrunA17_Chr3g0138101 | 32.143 | 168 | 111 | 3 | 10 | 177 | 14 | 178 | 8.30e-24 | 94.4 |
| Msa0567430 | MtrunA17_Chr3g0138121 | 32.143 | 168 | 111 | 3 | 10 | 177 | 14 | 178 | 8.39e-24 | 94.4 |
| Msa0567430 | MtrunA17_Chr3g0138111 | 32.143 | 168 | 111 | 3 | 10 | 177 | 14 | 178 | 8.48e-24 | 94.4 |
| Msa0567430 | MtrunA17_Chr3g0117931 | 36.970 | 165 | 90 | 5 | 11 | 163 | 10 | 172 | 3.44e-23 | 92.4 |
| Msa0567430 | MtrunA17_Chr2g0325101 | 34.545 | 165 | 94 | 5 | 11 | 163 | 8 | 170 | 2.34e-21 | 87.4 |
| Msa0567430 | MtrunA17_Chr6g0486041 | 35.152 | 165 | 93 | 5 | 11 | 163 | 8 | 170 | 4.96e-21 | 86.7 |
| Msa0567430 | MtrunA17_Chr6g0466161 | 28.571 | 189 | 120 | 4 | 26 | 207 | 7 | 187 | 1.14e-20 | 85.9 |
| Msa0567430 | MtrunA17_Chr6g0465471 | 28.042 | 189 | 121 | 4 | 26 | 207 | 7 | 187 | 6.15e-20 | 84.0 |
| Msa0567430 | MtrunA17_Chr4g0037021 | 32.121 | 165 | 98 | 5 | 11 | 163 | 8 | 170 | 1.98e-19 | 82.0 |
| Msa0567430 | MtrunA17_Chr4g0046211 | 36.154 | 130 | 80 | 3 | 11 | 139 | 8 | 135 | 3.21e-19 | 80.5 |
| Msa0567430 | MtrunA17_Chr8g0371501 | 31.515 | 165 | 99 | 5 | 11 | 163 | 8 | 170 | 8.67e-19 | 80.5 |
| Msa0567430 | MtrunA17_Chr5g0405791 | 31.515 | 165 | 99 | 5 | 11 | 163 | 8 | 170 | 9.04e-19 | 80.5 |
| Msa0567430 | MtrunA17_Chr6g0466431 | 38.542 | 96 | 50 | 1 | 11 | 106 | 10 | 96 | 5.34e-18 | 75.9 |
| Msa0567430 | MtrunA17_Chr6g0465611 | 38.542 | 96 | 50 | 1 | 11 | 106 | 10 | 96 | 5.34e-18 | 75.9 |
| Msa0567430 | MtrunA17_Chr5g0443631 | 24.561 | 171 | 123 | 3 | 5 | 170 | 100 | 269 | 2.08e-13 | 67.4 |
| Msa0567430 | MtrunA17_Chr1g0178291 | 32.051 | 156 | 97 | 4 | 12 | 166 | 431 | 578 | 6.54e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567430 | AT2G22290.1 | 87.923 | 207 | 25 | 0 | 1 | 207 | 1 | 207 | 1.12e-137 | 384 |
| Msa0567430 | AT5G10260.1 | 87.923 | 207 | 25 | 0 | 1 | 207 | 1 | 207 | 1.41e-137 | 383 |
| Msa0567430 | AT2G44610.1 | 85.096 | 208 | 30 | 1 | 1 | 207 | 1 | 208 | 1.19e-131 | 369 |
| Msa0567430 | AT4G39890.1 | 78.505 | 214 | 39 | 3 | 1 | 207 | 1 | 214 | 4.25e-117 | 332 |
| Msa0567430 | AT5G64990.1 | 77.387 | 199 | 44 | 1 | 10 | 207 | 8 | 206 | 1.62e-109 | 312 |
| Msa0567430 | AT5G64990.2 | 74.757 | 206 | 44 | 2 | 10 | 207 | 8 | 213 | 9.51e-107 | 306 |
| Msa0567430 | AT3G54840.1 | 47.561 | 164 | 85 | 1 | 9 | 171 | 33 | 196 | 1.94e-50 | 162 |
| Msa0567430 | AT3G54840.3 | 47.826 | 161 | 83 | 1 | 12 | 171 | 2 | 162 | 1.36e-49 | 159 |
| Msa0567430 | AT4G19640.1 | 40.323 | 186 | 111 | 0 | 11 | 196 | 12 | 197 | 2.76e-49 | 159 |
| Msa0567430 | AT5G45130.1 | 44.099 | 161 | 90 | 0 | 11 | 171 | 12 | 172 | 3.95e-49 | 159 |
| Msa0567430 | AT3G54840.2 | 48.077 | 156 | 80 | 1 | 9 | 163 | 33 | 188 | 2.78e-48 | 157 |
| Msa0567430 | AT5G45130.2 | 41.477 | 176 | 101 | 1 | 13 | 188 | 22 | 195 | 3.97e-47 | 154 |
| Msa0567430 | AT3G11730.1 | 39.000 | 200 | 112 | 3 | 10 | 205 | 9 | 202 | 2.11e-44 | 147 |
| Msa0567430 | AT4G17170.1 | 34.483 | 203 | 126 | 2 | 10 | 205 | 7 | 209 | 2.53e-44 | 147 |
| Msa0567430 | AT4G17160.1 | 34.146 | 205 | 121 | 2 | 9 | 205 | 6 | 204 | 8.34e-44 | 145 |
| Msa0567430 | AT1G09630.1 | 40.252 | 159 | 95 | 0 | 10 | 168 | 13 | 171 | 9.56e-44 | 145 |
| Msa0567430 | AT1G07410.1 | 39.752 | 161 | 97 | 0 | 10 | 170 | 13 | 173 | 1.40e-43 | 145 |
| Msa0567430 | AT1G05810.1 | 36.634 | 202 | 124 | 2 | 10 | 207 | 13 | 214 | 2.21e-43 | 145 |
| Msa0567430 | AT2G31680.1 | 36.946 | 203 | 123 | 2 | 10 | 207 | 13 | 215 | 5.77e-43 | 144 |
| Msa0567430 | AT1G05810.2 | 36.634 | 202 | 124 | 2 | 10 | 207 | 59 | 260 | 6.69e-43 | 145 |
| Msa0567430 | AT4G35860.1 | 34.975 | 203 | 125 | 3 | 10 | 205 | 7 | 209 | 7.74e-43 | 143 |
| Msa0567430 | AT5G59150.1 | 39.490 | 157 | 95 | 0 | 10 | 166 | 13 | 169 | 1.99e-42 | 142 |
| Msa0567430 | AT5G65270.1 | 37.580 | 157 | 98 | 0 | 10 | 166 | 18 | 174 | 2.13e-42 | 142 |
| Msa0567430 | AT1G02130.1 | 37.000 | 200 | 117 | 3 | 10 | 206 | 9 | 202 | 3.06e-42 | 141 |
| Msa0567430 | AT3G46830.1 | 38.854 | 157 | 96 | 0 | 10 | 166 | 13 | 169 | 4.44e-42 | 141 |
| Msa0567430 | AT3G46830.2 | 38.854 | 157 | 96 | 0 | 10 | 166 | 13 | 169 | 4.44e-42 | 141 |
| Msa0567430 | AT3G12160.1 | 37.438 | 203 | 120 | 3 | 10 | 205 | 16 | 218 | 1.50e-41 | 140 |
| Msa0567430 | AT4G17530.1 | 36.683 | 199 | 118 | 2 | 10 | 206 | 9 | 201 | 1.73e-41 | 139 |
| Msa0567430 | AT5G47520.1 | 35.437 | 206 | 124 | 4 | 10 | 206 | 15 | 220 | 1.87e-41 | 140 |
| Msa0567430 | AT4G39990.1 | 36.025 | 161 | 103 | 0 | 10 | 170 | 18 | 178 | 1.99e-41 | 140 |
| Msa0567430 | AT3G07410.1 | 42.208 | 154 | 89 | 0 | 10 | 163 | 13 | 166 | 2.22e-41 | 140 |
| Msa0567430 | AT2G43130.1 | 35.500 | 200 | 124 | 2 | 10 | 205 | 13 | 211 | 2.32e-41 | 139 |
| Msa0567430 | AT5G47960.1 | 34.804 | 204 | 125 | 2 | 10 | 205 | 16 | 219 | 3.22e-41 | 139 |
| Msa0567430 | AT3G53610.2 | 38.579 | 197 | 112 | 3 | 11 | 206 | 17 | 205 | 3.25e-41 | 139 |
| Msa0567430 | AT3G53610.3 | 38.579 | 197 | 112 | 3 | 11 | 206 | 17 | 205 | 3.25e-41 | 139 |
| Msa0567430 | AT3G53610.1 | 38.579 | 197 | 112 | 3 | 11 | 206 | 17 | 205 | 3.25e-41 | 139 |
| Msa0567430 | AT5G47200.1 | 36.683 | 199 | 118 | 2 | 10 | 206 | 9 | 201 | 3.86e-41 | 139 |
| Msa0567430 | AT5G59840.1 | 39.286 | 196 | 109 | 4 | 11 | 204 | 17 | 204 | 4.17e-41 | 139 |
| Msa0567430 | AT3G46060.2 | 39.487 | 195 | 108 | 4 | 11 | 203 | 17 | 203 | 5.53e-41 | 139 |
| Msa0567430 | AT3G46060.3 | 39.487 | 195 | 108 | 4 | 11 | 203 | 17 | 203 | 5.53e-41 | 139 |
| Msa0567430 | AT3G46060.1 | 39.487 | 195 | 108 | 4 | 11 | 203 | 17 | 203 | 5.53e-41 | 139 |
| Msa0567430 | AT1G18200.1 | 40.909 | 154 | 91 | 0 | 10 | 163 | 14 | 167 | 8.24e-41 | 139 |
| Msa0567430 | AT5G03520.1 | 39.394 | 198 | 118 | 2 | 11 | 206 | 17 | 214 | 9.69e-41 | 138 |
| Msa0567430 | AT3G15060.1 | 36.646 | 161 | 102 | 0 | 10 | 170 | 14 | 174 | 2.41e-40 | 137 |
| Msa0567430 | AT5G60860.1 | 33.161 | 193 | 111 | 1 | 10 | 184 | 14 | 206 | 6.80e-40 | 136 |
| Msa0567430 | AT4G18430.1 | 33.163 | 196 | 113 | 1 | 10 | 187 | 14 | 209 | 9.71e-40 | 135 |
| Msa0567430 | AT1G73640.1 | 38.961 | 154 | 94 | 0 | 10 | 163 | 14 | 167 | 2.04e-39 | 135 |
| Msa0567430 | AT3G18820.1 | 39.512 | 205 | 108 | 6 | 11 | 207 | 10 | 206 | 6.56e-39 | 133 |
| Msa0567430 | AT1G28550.1 | 37.580 | 157 | 98 | 0 | 10 | 166 | 14 | 170 | 7.03e-39 | 133 |
| Msa0567430 | AT1G16920.1 | 35.032 | 157 | 102 | 0 | 10 | 166 | 14 | 170 | 1.04e-38 | 133 |
| Msa0567430 | AT4G19640.2 | 44.444 | 126 | 70 | 0 | 11 | 136 | 12 | 137 | 2.82e-38 | 129 |
| Msa0567430 | AT3G09900.1 | 39.409 | 203 | 113 | 3 | 11 | 206 | 17 | 216 | 4.63e-38 | 131 |
| Msa0567430 | AT1G52280.1 | 39.216 | 204 | 110 | 4 | 11 | 207 | 10 | 206 | 4.67e-38 | 131 |
| Msa0567430 | AT1G01200.1 | 35.714 | 210 | 122 | 5 | 10 | 207 | 29 | 237 | 5.31e-38 | 132 |
| Msa0567430 | AT5G45750.1 | 31.579 | 209 | 124 | 5 | 10 | 206 | 14 | 215 | 1.16e-37 | 130 |
| Msa0567430 | AT1G06400.1 | 36.306 | 157 | 100 | 0 | 10 | 166 | 14 | 170 | 1.35e-37 | 130 |
| Msa0567430 | AT4G19640.3 | 43.066 | 137 | 74 | 1 | 11 | 147 | 12 | 144 | 1.63e-37 | 129 |
| Msa0567430 | AT2G33870.1 | 36.306 | 157 | 100 | 0 | 10 | 166 | 14 | 170 | 6.84e-37 | 128 |
| Msa0567430 | AT3G16100.1 | 39.216 | 204 | 110 | 4 | 11 | 207 | 10 | 206 | 2.08e-36 | 127 |
| Msa0567430 | AT4G18800.1 | 34.591 | 159 | 100 | 2 | 10 | 166 | 14 | 170 | 6.15e-36 | 125 |
| Msa0567430 | AT2G21880.1 | 36.967 | 211 | 110 | 6 | 11 | 207 | 11 | 212 | 7.16e-36 | 125 |
| Msa0567430 | AT4G09720.1 | 36.765 | 204 | 115 | 6 | 11 | 207 | 10 | 206 | 2.66e-35 | 124 |
| Msa0567430 | AT1G22740.1 | 35.784 | 204 | 114 | 6 | 11 | 207 | 10 | 203 | 5.75e-35 | 123 |
| Msa0567430 | AT1G49300.2 | 37.561 | 205 | 112 | 6 | 11 | 207 | 10 | 206 | 6.79e-35 | 123 |
| Msa0567430 | AT1G49300.1 | 37.561 | 205 | 112 | 6 | 11 | 207 | 10 | 206 | 6.79e-35 | 123 |
| Msa0567430 | AT5G03530.2 | 36.453 | 203 | 117 | 7 | 10 | 206 | 14 | 210 | 9.54e-34 | 120 |
| Msa0567430 | AT5G03530.1 | 36.453 | 203 | 117 | 7 | 10 | 206 | 14 | 210 | 9.54e-34 | 120 |
| Msa0567430 | AT1G43890.3 | 38.953 | 172 | 100 | 4 | 10 | 179 | 14 | 182 | 1.45e-33 | 119 |
| Msa0567430 | AT1G43890.1 | 38.953 | 172 | 100 | 4 | 10 | 179 | 14 | 182 | 1.45e-33 | 119 |
| Msa0567430 | AT1G43890.2 | 38.953 | 172 | 100 | 4 | 10 | 179 | 14 | 182 | 1.45e-33 | 119 |
| Msa0567430 | AT4G09720.4 | 34.450 | 209 | 118 | 5 | 11 | 207 | 10 | 211 | 2.57e-33 | 119 |
| Msa0567430 | AT5G03520.2 | 38.182 | 165 | 100 | 2 | 44 | 206 | 40 | 204 | 6.69e-33 | 117 |
| Msa0567430 | AT4G09720.3 | 34.419 | 215 | 116 | 6 | 11 | 207 | 10 | 217 | 9.87e-33 | 117 |
| Msa0567430 | AT4G35860.2 | 35.802 | 162 | 93 | 3 | 53 | 205 | 4 | 163 | 3.00e-32 | 115 |
| Msa0567430 | AT5G39620.1 | 34.783 | 207 | 120 | 5 | 9 | 207 | 5 | 204 | 2.12e-31 | 114 |
| Msa0567430 | AT3G09910.3 | 37.688 | 199 | 114 | 6 | 10 | 206 | 14 | 204 | 6.70e-31 | 112 |
| Msa0567430 | AT3G09910.1 | 37.688 | 199 | 114 | 6 | 10 | 206 | 14 | 204 | 6.70e-31 | 112 |
| Msa0567430 | AT3G09910.2 | 37.688 | 199 | 114 | 6 | 10 | 206 | 14 | 204 | 6.70e-31 | 112 |
| Msa0567430 | AT3G09910.5 | 39.375 | 160 | 94 | 3 | 10 | 167 | 14 | 172 | 5.14e-30 | 110 |
| Msa0567430 | AT3G09910.4 | 39.375 | 160 | 94 | 3 | 10 | 167 | 14 | 172 | 5.14e-30 | 110 |
| Msa0567430 | AT2G21880.4 | 35.204 | 196 | 104 | 6 | 26 | 207 | 1 | 187 | 7.39e-29 | 107 |
| Msa0567430 | AT2G21880.3 | 35.204 | 196 | 104 | 6 | 26 | 207 | 1 | 187 | 7.39e-29 | 107 |
| Msa0567430 | AT5G59150.2 | 39.474 | 114 | 69 | 0 | 53 | 166 | 5 | 118 | 7.16e-28 | 103 |
| Msa0567430 | AT2G21880.2 | 33.649 | 211 | 109 | 7 | 11 | 207 | 11 | 204 | 2.27e-26 | 100 |
| Msa0567430 | AT4G09720.6 | 36.158 | 177 | 99 | 6 | 38 | 207 | 3 | 172 | 3.16e-26 | 99.8 |
| Msa0567430 | AT4G09720.5 | 36.158 | 177 | 99 | 6 | 38 | 207 | 3 | 172 | 3.16e-26 | 99.8 |
| Msa0567430 | AT4G09720.2 | 36.158 | 177 | 99 | 6 | 38 | 207 | 3 | 172 | 3.16e-26 | 99.8 |
| Msa0567430 | AT5G55080.1 | 30.409 | 171 | 116 | 3 | 7 | 177 | 11 | 178 | 6.54e-25 | 97.4 |
| Msa0567430 | AT5G20010.1 | 30.729 | 192 | 126 | 4 | 10 | 201 | 14 | 198 | 1.06e-24 | 97.1 |
| Msa0567430 | AT5G20020.1 | 30.729 | 192 | 126 | 4 | 10 | 201 | 14 | 198 | 1.62e-24 | 96.7 |
| Msa0567430 | AT5G55190.1 | 32.143 | 168 | 111 | 3 | 10 | 177 | 14 | 178 | 1.33e-23 | 94.0 |
| Msa0567430 | AT2G44690.1 | 35.758 | 165 | 92 | 5 | 11 | 163 | 20 | 182 | 2.06e-23 | 93.2 |
| Msa0567430 | AT3G48040.1 | 36.970 | 165 | 90 | 5 | 11 | 163 | 10 | 172 | 2.01e-22 | 90.9 |
| Msa0567430 | AT5G62880.1 | 35.758 | 165 | 92 | 5 | 11 | 163 | 10 | 172 | 3.45e-21 | 87.8 |
| Msa0567430 | AT4G35020.1 | 33.939 | 165 | 95 | 5 | 11 | 163 | 8 | 170 | 3.60e-21 | 87.0 |
| Msa0567430 | AT4G35020.2 | 33.939 | 165 | 95 | 5 | 11 | 163 | 8 | 170 | 3.60e-21 | 87.0 |
| Msa0567430 | AT4G35020.3 | 33.939 | 165 | 95 | 5 | 11 | 163 | 8 | 170 | 3.60e-21 | 87.0 |
| Msa0567430 | AT3G48040.2 | 37.179 | 156 | 84 | 5 | 11 | 154 | 10 | 163 | 1.81e-20 | 84.7 |
| Msa0567430 | AT3G51300.1 | 33.333 | 165 | 96 | 5 | 11 | 163 | 8 | 170 | 4.49e-20 | 84.3 |
| Msa0567430 | AT1G20090.1 | 33.333 | 165 | 96 | 5 | 11 | 163 | 7 | 169 | 5.04e-20 | 84.0 |
| Msa0567430 | AT1G75840.1 | 33.333 | 165 | 96 | 5 | 11 | 163 | 8 | 170 | 5.20e-20 | 84.0 |
| Msa0567430 | AT4G35950.1 | 33.333 | 165 | 96 | 5 | 11 | 163 | 8 | 170 | 1.97e-19 | 82.4 |
| Msa0567430 | AT4G28950.1 | 33.129 | 163 | 97 | 5 | 11 | 163 | 8 | 168 | 2.57e-19 | 82.4 |
| Msa0567430 | AT2G17800.2 | 33.333 | 165 | 96 | 5 | 11 | 163 | 8 | 170 | 2.62e-19 | 82.4 |
| Msa0567430 | AT2G17800.1 | 33.333 | 165 | 96 | 5 | 11 | 163 | 8 | 170 | 2.62e-19 | 82.4 |
| Msa0567430 | AT5G62880.2 | 35.897 | 156 | 86 | 5 | 11 | 154 | 10 | 163 | 3.20e-19 | 82.0 |
| Msa0567430 | AT5G45970.1 | 31.515 | 165 | 99 | 5 | 11 | 163 | 8 | 170 | 9.98e-19 | 80.9 |
| Msa0567430 | AT4G35020.4 | 35.965 | 114 | 70 | 3 | 11 | 123 | 8 | 119 | 2.68e-15 | 70.5 |
| Msa0567430 | AT4G35020.5 | 35.965 | 114 | 70 | 3 | 11 | 123 | 8 | 119 | 2.68e-15 | 70.5 |
| Msa0567430 | AT5G46025.1 | 36.782 | 87 | 54 | 1 | 85 | 170 | 20 | 106 | 2.69e-14 | 67.0 |
| Msa0567430 | AT3G51290.2 | 32.576 | 132 | 76 | 4 | 44 | 163 | 641 | 771 | 5.44e-12 | 64.7 |
| Msa0567430 | AT3G21700.3 | 23.256 | 172 | 125 | 3 | 5 | 170 | 102 | 272 | 3.63e-11 | 61.6 |
| Msa0567430 | AT5G54840.1 | 24.699 | 166 | 117 | 5 | 11 | 170 | 103 | 266 | 4.43e-11 | 61.2 |
Find 64 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGAAAACGAGCTTGTATT+TGG | 0.223259 | 4_1:-68778840 | None:intergenic |
| AACCCTTTCTTCTACAAATA+AGG | 0.224029 | 4_1:+68780942 | Msa0567430:CDS |
| TGAGACTTCTAAATCTTTCT+TGG | 0.265565 | 4_1:-68779844 | None:intergenic |
| CGATCCATTTCTCTCATAAA+TGG | 0.286173 | 4_1:+68778799 | Msa0567430:exon |
| TCAATGATCCTTGAGTTAAT+TGG | 0.293170 | 4_1:+68781149 | Msa0567430:three_prime_UTR |
| AGTCGAAAATGGCGTGTATT+TGG | 0.316103 | 4_1:+68778649 | None:intergenic |
| GAACTGTTCGTTTGCAGCTT+TGG | 0.333518 | 4_1:+68779650 | Msa0567430:CDS |
| CAAATTTGACACCACCTATC+AGG | 0.340690 | 4_1:+68778913 | Msa0567430:CDS |
| GATGCCAAATCAAAAGAGTT+TGG | 0.348088 | 4_1:+68780561 | Msa0567430:CDS |
| TCCTCCCTGCTGCTCTGTAT+TGG | 0.354070 | 4_1:-68781007 | None:intergenic |
| TATTATTGTATTCTTACATC+CGG | 0.383371 | 4_1:-68781255 | None:intergenic |
| CTTCCTTATTTGTAGAAGAA+AGG | 0.383495 | 4_1:-68780945 | None:intergenic |
| GAGGAGGTTGCTCATGTTAG+AGG | 0.391358 | 4_1:+68781025 | Msa0567430:CDS |
| AAGATTGCTTCCGCCTTGCC+AGG | 0.393556 | 4_1:+68780913 | Msa0567430:CDS |
| AACGAACAGTTCTATCTTCA+AGG | 0.399142 | 4_1:-68779639 | None:intergenic |
| CATGAAGCGGGTGATGATAC+TGG | 0.410880 | 4_1:-68778885 | None:intergenic |
| GAAGAAAGGGTTTCCATCCC+TGG | 0.417515 | 4_1:-68780931 | None:intergenic |
| TTCCTTATTTGTAGAAGAAA+GGG | 0.422408 | 4_1:-68780944 | None:intergenic |
| GAAGAATCTCTTATGTAGCT+TGG | 0.431932 | 4_1:-68779869 | None:intergenic |
| TGTGGGACAAATTGCGGTAA+TGG | 0.433044 | 4_1:+68781174 | Msa0567430:three_prime_UTR |
| TGCTTCCGCCTTGCCAGGGA+TGG | 0.448090 | 4_1:+68780918 | Msa0567430:CDS |
| TTCATCCAATACAGAGCAGC+AGG | 0.451660 | 4_1:+68781002 | Msa0567430:CDS |
| GTCGCCATTTATGAGAGAAA+TGG | 0.453134 | 4_1:-68778803 | None:intergenic |
| TCTTAAATGTAAAGTAAAGC+TGG | 0.469282 | 4_1:+68781108 | Msa0567430:three_prime_UTR |
| AAACTGATCTTGTCGAGAAA+AGG | 0.473751 | 4_1:+68780193 | Msa0567430:CDS |
| ATTATTGTATTCTTACATCC+GGG | 0.476541 | 4_1:-68781254 | None:intergenic |
| TTCTTAGGCGATCAATCCGT+TGG | 0.478079 | 4_1:+68778857 | Msa0567430:CDS |
| AGGCAAGTTTCTATAGAAGA+AGG | 0.486341 | 4_1:+68780537 | Msa0567430:intron |
| GATGTTATAATTGTCTTGGT+TGG | 0.487954 | 4_1:+68780165 | Msa0567430:CDS |
| TAGTGATGTTATAATTGTCT+TGG | 0.496039 | 4_1:+68780161 | Msa0567430:CDS |
| ATCGAAACCAGTGCAAAAGC+AGG | 0.513342 | 4_1:+68780594 | Msa0567430:CDS |
| AATGAAGAATTGAACCTGAT+AGG | 0.522083 | 4_1:-68778927 | None:intergenic |
| AATACAGAGCAGCAGGGAGG+AGG | 0.528419 | 4_1:+68781009 | Msa0567430:CDS |
| TTAACTTTCAGGGATACTGC+AGG | 0.536162 | 4_1:+68779821 | Msa0567430:intron |
| ATATAATTTCAGGCTACTAT+CGG | 0.539656 | 4_1:+68779589 | Msa0567430:intron |
| GTATTGGATGAATGCACTGT+GGG | 0.541454 | 4_1:-68780991 | None:intergenic |
| AAATTTGTCGTACATGAAGC+GGG | 0.551096 | 4_1:-68778897 | None:intergenic |
| AAAAGCAGGCTTCAATATCA+AGG | 0.552081 | 4_1:+68780608 | Msa0567430:CDS |
| CACTAACAAGTGGGTTGAGG+AGG | 0.553351 | 4_1:+68780122 | Msa0567430:CDS |
| GAACACTAACAAGTGGGTTG+AGG | 0.553502 | 4_1:+68780119 | Msa0567430:CDS |
| TTCTACAAATAAGGAAGACA+TGG | 0.563578 | 4_1:+68780951 | Msa0567430:CDS |
| AGATTGCTTCCGCCTTGCCA+GGG | 0.573903 | 4_1:+68780914 | Msa0567430:CDS |
| TTTGTTATACAATTAGTCCC+CGG | 0.575062 | 4_1:+68781236 | Msa0567430:three_prime_UTR |
| CAAATTTGTCGTACATGAAG+CGG | 0.575167 | 4_1:-68778898 | None:intergenic |
| CATTTATGAGAGAAATGGAT+CGG | 0.579731 | 4_1:-68778798 | None:intergenic |
| CCTTGAGTTAATTGGTGTGT+GGG | 0.588838 | 4_1:+68781157 | Msa0567430:three_prime_UTR |
| AAGGGTTTCCATCCCTGGCA+AGG | 0.588850 | 4_1:-68780926 | None:intergenic |
| CATTTCTGAACACTAACAAG+TGG | 0.594464 | 4_1:+68780112 | Msa0567430:CDS |
| ATTTCTCTCATAAATGGCGA+CGG | 0.612804 | 4_1:+68778805 | Msa0567430:exon |
| ATTTCTGAACACTAACAAGT+GGG | 0.616106 | 4_1:+68780113 | Msa0567430:CDS |
| TCCTTGAGTTAATTGGTGTG+TGG | 0.623166 | 4_1:+68781156 | Msa0567430:three_prime_UTR |
| GAAGCAATCTTACGAAACAA+AGG | 0.623923 | 4_1:-68780901 | None:intergenic |
| ACGAGCTTGTATTTGGCGAG+AGG | 0.624355 | 4_1:-68778833 | None:intergenic |
| TTATTGTATTCTTACATCCG+GGG | 0.636847 | 4_1:-68781253 | None:intergenic |
| CCCACACACCAATTAACTCA+AGG | 0.638626 | 4_1:-68781157 | None:intergenic |
| TTTCACTTGAGTATAATACT+GGG | 0.651284 | 4_1:+68781078 | Msa0567430:three_prime_UTR |
| TAAATGTAAAGTAAAGCTGG+AGG | 0.654451 | 4_1:+68781111 | Msa0567430:three_prime_UTR |
| GAGGAGGTGCGTCAAGAACG+TGG | 0.657614 | 4_1:+68780138 | Msa0567430:CDS |
| TGTATTGGATGAATGCACTG+TGG | 0.660739 | 4_1:-68780992 | None:intergenic |
| TTGGTGTGTGGGACAAATTG+CGG | 0.687470 | 4_1:+68781168 | Msa0567430:three_prime_UTR |
| TCCAATACAGAGCAGCAGGG+AGG | 0.703010 | 4_1:+68781006 | Msa0567430:CDS |
| GGTTTCCATCCCTGGCAAGG+CGG | 0.703532 | 4_1:-68780923 | None:intergenic |
| GAAGAATTGAACCTGATAGG+TGG | 0.713334 | 4_1:-68778924 | None:intergenic |
| TCATCCAATACAGAGCAGCA+GGG | 0.714266 | 4_1:+68781003 | Msa0567430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAAAATTAAAATCATA+GGG | - | chr4_1:68779071-68779090 | None:intergenic | 10.0% |
| !! | TATAACAAATGAAAAAATAA+CGG | - | chr4_1:68781225-68781244 | None:intergenic | 10.0% |
| !! | CTCATAAAAATTAAAATCAT+AGG | - | chr4_1:68779072-68779091 | None:intergenic | 15.0% |
| !!! | GATTTTAATTTTTATGAGAT+TGG | + | chr4_1:68779074-68779093 | Msa0567430:intron | 15.0% |
| !! | TTAAAAATGTGATTTATCAA+GGG | - | chr4_1:68779185-68779204 | None:intergenic | 15.0% |
| !!! | TTGATAAATCACATTTTTAA+GGG | + | chr4_1:68779185-68779204 | Msa0567430:intron | 15.0% |
| !!! | ACAATGAATTTTAAAAAAAC+TGG | - | chr4_1:68779239-68779258 | None:intergenic | 15.0% |
| !! | AAATTTGATCATATAATTTC+AGG | + | chr4_1:68779579-68779598 | Msa0567430:intron | 15.0% |
| !! | TATCGTTATTTAACTAAAAA+AGG | - | chr4_1:68780038-68780057 | None:intergenic | 15.0% |
| !!! | GTTTTTGTTTAATATCATAT+TGG | + | chr4_1:68780285-68780304 | Msa0567430:intron | 15.0% |
| !! | GTTAATGAAATTAATTGAAT+TGG | - | chr4_1:68780446-68780465 | None:intergenic | 15.0% |
| !! | TCAATTAATTTCATTAACAA+AGG | + | chr4_1:68780448-68780467 | Msa0567430:intron | 15.0% |
| !!! | GGTCTAATTATTTTTTTATA+TGG | + | chr4_1:68780501-68780520 | Msa0567430:intron | 15.0% |
| !!! | GAATATCTGAAAAATTTGTT+AGG | - | chr4_1:68778718-68778737 | None:intergenic | 20.0% |
| !! | CTTAAAAATGTGATTTATCA+AGG | - | chr4_1:68779186-68779205 | None:intergenic | 20.0% |
| !!! | CTTGATAAATCACATTTTTA+AGG | + | chr4_1:68779184-68779203 | Msa0567430:intron | 20.0% |
| !!! | AATTCTGATGATTTTTTAAG+AGG | + | chr4_1:68779380-68779399 | Msa0567430:intron | 20.0% |
| !!! | GCTTTTATGTTAGAATATTA+TGG | + | chr4_1:68779402-68779421 | Msa0567430:intron | 20.0% |
| !! | TTCCAACATCATATAATAAA+TGG | + | chr4_1:68779483-68779502 | Msa0567430:intron | 20.0% |
| !! | CAAAAAAATATAAATTGACG+AGG | - | chr4_1:68779687-68779706 | None:intergenic | 20.0% |
| !! | TCAGAAATAGTAAAAAGAAA+AGG | - | chr4_1:68779789-68779808 | None:intergenic | 20.0% |
| !!! | TTAGTGTATTTTAACTTTCA+GGG | + | chr4_1:68779811-68779830 | Msa0567430:intron | 20.0% |
| !! | TTACTTAGGTTAATAACTAT+AGG | - | chr4_1:68780068-68780087 | None:intergenic | 20.0% |
| !! | ATGAATATATAGATCAAACT+CGG | - | chr4_1:68780233-68780252 | None:intergenic | 20.0% |
| !! | AATTAATTGAATTGGCTATA+AGG | - | chr4_1:68780438-68780457 | None:intergenic | 20.0% |
| !!! | ATTTTCATAGTTTTTTTGCT+TGG | + | chr4_1:68780644-68780663 | Msa0567430:intron | 20.0% |
| !! | TATTCGATGTAAAACAAAAT+AGG | - | chr4_1:68780788-68780807 | None:intergenic | 20.0% |
| !! | TATTATTGTATTCTTACATC+CGG | - | chr4_1:68781258-68781277 | None:intergenic | 20.0% |
| !! | TTCTCAATTTCAATTTTGCA+TGG | + | chr4_1:68778956-68778975 | Msa0567430:intron | 25.0% |
| ! | AGATTGATCATTCAAGAATT+AGG | + | chr4_1:68779260-68779279 | Msa0567430:intron | 25.0% |
| ! | CTCCATTTATTATATGATGT+TGG | - | chr4_1:68779488-68779507 | None:intergenic | 25.0% |
| ! | CAACATCATATAATAAATGG+AGG | + | chr4_1:68779486-68779505 | Msa0567430:intron | 25.0% |
| ! | ATATAATTTCAGGCTACTAT+CGG | + | chr4_1:68779589-68779608 | Msa0567430:intron | 25.0% |
| ! | AGATGATGCATTATGATTTA+TGG | + | chr4_1:68779729-68779748 | Msa0567430:intron | 25.0% |
| ! | AAACAAAAAATCCTACTACA+CGG | - | chr4_1:68779764-68779783 | None:intergenic | 25.0% |
| !!! | CTTAGTGTATTTTAACTTTC+AGG | + | chr4_1:68779810-68779829 | Msa0567430:intron | 25.0% |
| ! | TAGTGATGTTATAATTGTCT+TGG | + | chr4_1:68780161-68780180 | Msa0567430:CDS | 25.0% |
| ! | TCTATATATTCATTCACAAC+CGG | + | chr4_1:68780240-68780259 | Msa0567430:intron | 25.0% |
| ! | TAGCAAAATTACAAAGAACA+TGG | - | chr4_1:68780386-68780405 | None:intergenic | 25.0% |
| !!! | CTTTGTAATTTTGCTATGAT+AGG | + | chr4_1:68780390-68780409 | Msa0567430:intron | 25.0% |
| ! | TTTCAAATATTGCGATGTTA+TGG | + | chr4_1:68780480-68780499 | Msa0567430:intron | 25.0% |
| ! | TTAGATGTGAAAGTTAGTAA+AGG | - | chr4_1:68780756-68780775 | None:intergenic | 25.0% |
| !! | TTCCTTATTTGTAGAAGAAA+GGG | - | chr4_1:68780947-68780966 | None:intergenic | 25.0% |
| !! | TTTTCACTTGAGTATAATAC+TGG | + | chr4_1:68781077-68781096 | Msa0567430:three_prime_UTR | 25.0% |
| ! | TTTCACTTGAGTATAATACT+GGG | + | chr4_1:68781078-68781097 | Msa0567430:three_prime_UTR | 25.0% |
| ! | TCTTAAATGTAAAGTAAAGC+TGG | + | chr4_1:68781108-68781127 | Msa0567430:three_prime_UTR | 25.0% |
| ! | ATTATTGTATTCTTACATCC+GGG | - | chr4_1:68781257-68781276 | None:intergenic | 25.0% |
| CATTTATGAGAGAAATGGAT+CGG | - | chr4_1:68778801-68778820 | None:intergenic | 30.0% | |
| TAAGAAAACGAGCTTGTATT+TGG | - | chr4_1:68778843-68778862 | None:intergenic | 30.0% | |
| ! | AAATACAAGCTCGTTTTCTT+AGG | + | chr4_1:68778842-68778861 | Msa0567430:CDS | 30.0% |
| AATGAAGAATTGAACCTGAT+AGG | - | chr4_1:68778930-68778949 | None:intergenic | 30.0% | |
| !! | TGATCACAAGTTGATGAATT+AGG | + | chr4_1:68779121-68779140 | Msa0567430:intron | 30.0% |
| !! | AAGTTGATGAATTAGGACTT+TGG | + | chr4_1:68779128-68779147 | Msa0567430:intron | 30.0% |
| ! | TCATTCATAAGTCACTTTCA+AGG | + | chr4_1:68779344-68779363 | Msa0567430:intron | 30.0% |
| TGAGACTTCTAAATCTTTCT+TGG | - | chr4_1:68779847-68779866 | None:intergenic | 30.0% | |
| TATGTGTTTGCATTTGAATC+TGG | + | chr4_1:68779987-68780006 | Msa0567430:intron | 30.0% | |
| ATGTGTTTGCATTTGAATCT+GGG | + | chr4_1:68779988-68780007 | Msa0567430:intron | 30.0% | |
| TACATTAGAACAGCTTACTT+AGG | - | chr4_1:68780082-68780101 | None:intergenic | 30.0% | |
| ATTTCTGAACACTAACAAGT+GGG | + | chr4_1:68780113-68780132 | Msa0567430:CDS | 30.0% | |
| GATGTTATAATTGTCTTGGT+TGG | + | chr4_1:68780165-68780184 | Msa0567430:CDS | 30.0% | |
| !! | GATTCCAAACTCTTTTGATT+TGG | - | chr4_1:68780568-68780587 | None:intergenic | 30.0% |
| TGTGAAAGTTAGTAAAGGTA+AGG | - | chr4_1:68780751-68780770 | None:intergenic | 30.0% | |
| AACCCTTTCTTCTACAAATA+AGG | + | chr4_1:68780942-68780961 | Msa0567430:CDS | 30.0% | |
| ! | CTTCCTTATTTGTAGAAGAA+AGG | - | chr4_1:68780948-68780967 | None:intergenic | 30.0% |
| TTCTACAAATAAGGAAGACA+TGG | + | chr4_1:68780951-68780970 | Msa0567430:CDS | 30.0% | |
| TAAATGTAAAGTAAAGCTGG+AGG | + | chr4_1:68781111-68781130 | Msa0567430:three_prime_UTR | 30.0% | |
| TCAATGATCCTTGAGTTAAT+TGG | + | chr4_1:68781149-68781168 | Msa0567430:three_prime_UTR | 30.0% | |
| ! | TTTGTTATACAATTAGTCCC+CGG | + | chr4_1:68781236-68781255 | Msa0567430:three_prime_UTR | 30.0% |
| TTATTGTATTCTTACATCCG+GGG | - | chr4_1:68781256-68781275 | None:intergenic | 30.0% | |
| CGATCCATTTCTCTCATAAA+TGG | + | chr4_1:68778799-68778818 | Msa0567430:exon | 35.0% | |
| ATTTCTCTCATAAATGGCGA+CGG | + | chr4_1:68778805-68778824 | Msa0567430:exon | 35.0% | |
| AAATTTGTCGTACATGAAGC+GGG | - | chr4_1:68778900-68778919 | None:intergenic | 35.0% | |
| CAAATTTGTCGTACATGAAG+CGG | - | chr4_1:68778901-68778920 | None:intergenic | 35.0% | |
| AATTAGGACTTTGGACGATT+AGG | + | chr4_1:68779137-68779156 | Msa0567430:intron | 35.0% | |
| GGTTTCAACGACTCAAATTA+TGG | - | chr4_1:68779288-68779307 | None:intergenic | 35.0% | |
| TAGCAATCTCTAGCAACATA+GGG | - | chr4_1:68779554-68779573 | None:intergenic | 35.0% | |
| TTAGCAATCTCTAGCAACAT+AGG | - | chr4_1:68779555-68779574 | None:intergenic | 35.0% | |
| AACGAACAGTTCTATCTTCA+AGG | - | chr4_1:68779642-68779661 | None:intergenic | 35.0% | |
| GAAGAATCTCTTATGTAGCT+TGG | - | chr4_1:68779872-68779891 | None:intergenic | 35.0% | |
| TAAGCTGTTCTAATGTAGAC+AGG | + | chr4_1:68780085-68780104 | Msa0567430:intron | 35.0% | |
| CATTTCTGAACACTAACAAG+TGG | + | chr4_1:68780112-68780131 | Msa0567430:CDS | 35.0% | |
| AAACTGATCTTGTCGAGAAA+AGG | + | chr4_1:68780193-68780212 | Msa0567430:CDS | 35.0% | |
| AAACTTGCCTGTAAACAAAG+CGG | - | chr4_1:68780527-68780546 | None:intergenic | 35.0% | |
| AGGCAAGTTTCTATAGAAGA+AGG | + | chr4_1:68780537-68780556 | Msa0567430:intron | 35.0% | |
| GATGCCAAATCAAAAGAGTT+TGG | + | chr4_1:68780561-68780580 | Msa0567430:CDS | 35.0% | |
| AAAAGCAGGCTTCAATATCA+AGG | + | chr4_1:68780608-68780627 | Msa0567430:CDS | 35.0% | |
| GTTTATCTTCTTTCCCATGT+TGG | + | chr4_1:68780837-68780856 | Msa0567430:intron | 35.0% | |
| ! | TGCATTGACAGATAACAATG+AGG | - | chr4_1:68780872-68780891 | None:intergenic | 35.0% |
| GAAGCAATCTTACGAAACAA+AGG | - | chr4_1:68780904-68780923 | None:intergenic | 35.0% | |
| GTCGCCATTTATGAGAGAAA+TGG | - | chr4_1:68778806-68778825 | None:intergenic | 40.0% | |
| !!! | GATGATACTGGTTTTGCCAA+CGG | - | chr4_1:68778876-68778895 | None:intergenic | 40.0% |
| CAAATTTGACACCACCTATC+AGG | + | chr4_1:68778913-68778932 | Msa0567430:CDS | 40.0% | |
| GAAGAATTGAACCTGATAGG+TGG | - | chr4_1:68778927-68778946 | None:intergenic | 40.0% | |
| AGTCGTTGAAACCCTTGAAT+GGG | + | chr4_1:68779295-68779314 | Msa0567430:intron | 40.0% | |
| GAACTCTTCTTCCCATTCAA+GGG | - | chr4_1:68779309-68779328 | None:intergenic | 40.0% | |
| ATGGTGCAATTTCTGCTTAG+TGG | + | chr4_1:68779421-68779440 | Msa0567430:intron | 40.0% | |
| ! | TCTGCTTAGTGGATAAAGCT+TGG | + | chr4_1:68779432-68779451 | Msa0567430:intron | 40.0% |
| AGCAATCTCTAGCAACATAG+GGG | - | chr4_1:68779553-68779572 | None:intergenic | 40.0% | |
| TTAACTTTCAGGGATACTGC+AGG | + | chr4_1:68779821-68779840 | Msa0567430:intron | 40.0% | |
| !! | TATATGGCCGCTTTGTTTAC+AGG | + | chr4_1:68780517-68780536 | Msa0567430:intron | 40.0% |
| GATCACATGCATCATAGTTG+AGG | - | chr4_1:68780694-68780713 | None:intergenic | 40.0% | |
| GTATTGGATGAATGCACTGT+GGG | - | chr4_1:68780994-68781013 | None:intergenic | 40.0% | |
| TGTATTGGATGAATGCACTG+TGG | - | chr4_1:68780995-68781014 | None:intergenic | 40.0% | |
| TCCTTGAGTTAATTGGTGTG+TGG | + | chr4_1:68781156-68781175 | Msa0567430:three_prime_UTR | 40.0% | |
| CCTTGAGTTAATTGGTGTGT+GGG | + | chr4_1:68781157-68781176 | Msa0567430:three_prime_UTR | 40.0% | |
| TTCTTAGGCGATCAATCCGT+TGG | + | chr4_1:68778857-68778876 | Msa0567430:CDS | 45.0% | |
| GAGTCGTTGAAACCCTTGAA+TGG | + | chr4_1:68779294-68779313 | Msa0567430:intron | 45.0% | |
| CGAACTCTTCTTCCCATTCA+AGG | - | chr4_1:68779310-68779329 | None:intergenic | 45.0% | |
| GCAATCTCTAGCAACATAGG+GGG | - | chr4_1:68779552-68779571 | None:intergenic | 45.0% | |
| GAACTGTTCGTTTGCAGCTT+TGG | + | chr4_1:68779650-68779669 | Msa0567430:CDS | 45.0% | |
| ATCCTACTACACGGCTACAA+CGG | - | chr4_1:68779755-68779774 | None:intergenic | 45.0% | |
| !! | GAACACTAACAAGTGGGTTG+AGG | + | chr4_1:68780119-68780138 | Msa0567430:CDS | 45.0% |
| !! | TTCACAACCGGTTTTCTGAC+TGG | + | chr4_1:68780252-68780271 | Msa0567430:intron | 45.0% |
| !! | TCACAACCGGTTTTCTGACT+GGG | + | chr4_1:68780253-68780272 | Msa0567430:intron | 45.0% |
| ACCATACCCAGTCAGAAAAC+CGG | - | chr4_1:68780262-68780281 | None:intergenic | 45.0% | |
| ATAGGTCAAGTGTCTTGCAG+TGG | + | chr4_1:68780408-68780427 | Msa0567430:intron | 45.0% | |
| ATCGAAACCAGTGCAAAAGC+AGG | + | chr4_1:68780594-68780613 | Msa0567430:CDS | 45.0% | |
| !! | ATTGAAGCCTGCTTTTGCAC+TGG | - | chr4_1:68780604-68780623 | None:intergenic | 45.0% |
| CAGGCTTCAATATCAAGGTC+AGG | + | chr4_1:68780613-68780632 | Msa0567430:intron | 45.0% | |
| GAGGACACAAGAACCAACAT+GGG | - | chr4_1:68780853-68780872 | None:intergenic | 45.0% | |
| TGAGGACACAAGAACCAACA+TGG | - | chr4_1:68780854-68780873 | None:intergenic | 45.0% | |
| TTCATCCAATACAGAGCAGC+AGG | + | chr4_1:68781002-68781021 | Msa0567430:CDS | 45.0% | |
| TCATCCAATACAGAGCAGCA+GGG | + | chr4_1:68781003-68781022 | Msa0567430:CDS | 45.0% | |
| CCCACACACCAATTAACTCA+AGG | - | chr4_1:68781160-68781179 | None:intergenic | 45.0% | |
| TTGGTGTGTGGGACAAATTG+CGG | + | chr4_1:68781168-68781187 | Msa0567430:three_prime_UTR | 45.0% | |
| TGTGGGACAAATTGCGGTAA+TGG | + | chr4_1:68781174-68781193 | Msa0567430:three_prime_UTR | 45.0% | |
| ACGAGCTTGTATTTGGCGAG+AGG | - | chr4_1:68778836-68778855 | None:intergenic | 50.0% | |
| CATGAAGCGGGTGATGATAC+TGG | - | chr4_1:68778888-68778907 | None:intergenic | 50.0% | |
| !! | CACTAACAAGTGGGTTGAGG+AGG | + | chr4_1:68780122-68780141 | Msa0567430:CDS | 50.0% |
| !! | ACCGGTTTTCTGACTGGGTA+TGG | + | chr4_1:68780258-68780277 | Msa0567430:intron | 50.0% |
| ! | AGTTGAGGAGCATGCTCTAG+TGG | - | chr4_1:68780679-68780698 | None:intergenic | 50.0% |
| GAAGAAAGGGTTTCCATCCC+TGG | - | chr4_1:68780934-68780953 | None:intergenic | 50.0% | |
| GAGGAGGTTGCTCATGTTAG+AGG | + | chr4_1:68781025-68781044 | Msa0567430:CDS | 50.0% | |
| AAGATTGCTTCCGCCTTGCC+AGG | + | chr4_1:68780913-68780932 | Msa0567430:CDS | 55.0% | |
| AGATTGCTTCCGCCTTGCCA+GGG | + | chr4_1:68780914-68780933 | Msa0567430:CDS | 55.0% | |
| AAGGGTTTCCATCCCTGGCA+AGG | - | chr4_1:68780929-68780948 | None:intergenic | 55.0% | |
| TCCAATACAGAGCAGCAGGG+AGG | + | chr4_1:68781006-68781025 | Msa0567430:CDS | 55.0% | |
| TCCTCCCTGCTGCTCTGTAT+TGG | - | chr4_1:68781010-68781029 | None:intergenic | 55.0% | |
| AATACAGAGCAGCAGGGAGG+AGG | + | chr4_1:68781009-68781028 | Msa0567430:CDS | 55.0% | |
| GGCCGTTGTAGCCGTGTAGT+AGG | + | chr4_1:68779750-68779769 | Msa0567430:intron | 60.0% | |
| ! | GAGGAGGTGCGTCAAGAACG+TGG | + | chr4_1:68780138-68780157 | Msa0567430:CDS | 60.0% |
| GGTTTCCATCCCTGGCAAGG+CGG | - | chr4_1:68780926-68780945 | None:intergenic | 60.0% | |
| TGCTTCCGCCTTGCCAGGGA+TGG | + | chr4_1:68780918-68780937 | Msa0567430:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 68778664 | 68781286 | 68778664 | ID=Msa0567430;Name=Msa0567430 |
| chr4_1 | mRNA | 68778664 | 68781286 | 68778664 | ID=Msa0567430-mRNA-1;Parent=Msa0567430;Name=Msa0567430-mRNA-1;_AED=0.07;_eAED=0.07;_QI=154|1|1|1|1|1|6|242|207 |
| chr4_1 | exon | 68778664 | 68778934 | 68778664 | ID=Msa0567430-mRNA-1:exon:22793;Parent=Msa0567430-mRNA-1 |
| chr4_1 | exon | 68779601 | 68779671 | 68779601 | ID=Msa0567430-mRNA-1:exon:22794;Parent=Msa0567430-mRNA-1 |
| chr4_1 | exon | 68779832 | 68779920 | 68779832 | ID=Msa0567430-mRNA-1:exon:22795;Parent=Msa0567430-mRNA-1 |
| chr4_1 | exon | 68780103 | 68780214 | 68780103 | ID=Msa0567430-mRNA-1:exon:22796;Parent=Msa0567430-mRNA-1 |
| chr4_1 | exon | 68780539 | 68780629 | 68780539 | ID=Msa0567430-mRNA-1:exon:22797;Parent=Msa0567430-mRNA-1 |
| chr4_1 | exon | 68780901 | 68781286 | 68780901 | ID=Msa0567430-mRNA-1:exon:22798;Parent=Msa0567430-mRNA-1 |
| chr4_1 | five_prime_UTR | 68778664 | 68778817 | 68778664 | ID=Msa0567430-mRNA-1:five_prime_utr;Parent=Msa0567430-mRNA-1 |
| chr4_1 | CDS | 68778818 | 68778934 | 68778818 | ID=Msa0567430-mRNA-1:cds;Parent=Msa0567430-mRNA-1 |
| chr4_1 | CDS | 68779601 | 68779671 | 68779601 | ID=Msa0567430-mRNA-1:cds;Parent=Msa0567430-mRNA-1 |
| chr4_1 | CDS | 68779832 | 68779920 | 68779832 | ID=Msa0567430-mRNA-1:cds;Parent=Msa0567430-mRNA-1 |
| chr4_1 | CDS | 68780103 | 68780214 | 68780103 | ID=Msa0567430-mRNA-1:cds;Parent=Msa0567430-mRNA-1 |
| chr4_1 | CDS | 68780539 | 68780629 | 68780539 | ID=Msa0567430-mRNA-1:cds;Parent=Msa0567430-mRNA-1 |
| chr4_1 | CDS | 68780901 | 68781044 | 68780901 | ID=Msa0567430-mRNA-1:cds;Parent=Msa0567430-mRNA-1 |
| chr4_1 | three_prime_UTR | 68781045 | 68781286 | 68781045 | ID=Msa0567430-mRNA-1:three_prime_utr;Parent=Msa0567430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
