AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0937940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937940 MtrunA17_Chr6g0453741 90.123 405 16 3 1 388 1 398 0.0 699
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0937940 AT3G29185.1 68.805 343 89 3 64 388 54 396 4.81e-173 488
Msa0937940 AT3G29185.2 72.378 286 76 2 106 388 49 334 2.49e-152 433

Find 99 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCTTTCTGTTAGCTCTTA+TGG 0.120996 6_3:-9482070 Msa0937940:CDS
TCATCAAACACTTCAGTTTC+TGG 0.125528 6_3:-9480305 Msa0937940:CDS
TTACTCCATTTCTTGGTAAA+TGG 0.159581 6_3:-9479070 Msa0937940:CDS
AGCAAGAGCCTTTCACATTT+TGG 0.171401 6_3:-9479397 Msa0937940:CDS
TCTTCACAATAAGAACTATT+TGG 0.203167 6_3:+9477806 None:intergenic
AATAGGATTACTCCATTTCT+TGG 0.266411 6_3:-9479077 Msa0937940:CDS
GAAGTTGAAATTGGAGAGTT+TGG 0.274453 6_3:+9482563 None:intergenic
ACAAACCGAAGTGGTGTCTA+TGG 0.282463 6_3:-9479032 Msa0937940:CDS
GACAATTTAGTCACATTTGA+TGG 0.303591 6_3:-9478043 Msa0937940:CDS
GGTAGTGTTGAAGTTGAAAT+TGG 0.310772 6_3:+9482554 None:intergenic
TCAACCTTAATATCGGAAAA+TGG 0.312890 6_3:-9482383 Msa0937940:CDS
TGACAATGGCCAACTTATTC+AGG 0.316730 6_3:-9478964 Msa0937940:intron
CTCCTCTACTTGACAGTGCT+GGG 0.336473 6_3:-9479314 Msa0937940:CDS
CCTCAATGCAAATGCTTTCT+CGG 0.336795 6_3:+9480067 None:intergenic
AGCTTTCTGTTAGCTCTTAT+GGG 0.337911 6_3:-9482069 Msa0937940:CDS
ATCCATTGATTGAATATGAT+TGG 0.339447 6_3:-9477745 Msa0937940:three_prime_UTR
CCTCCTCTACTTGACAGTGC+TGG 0.367725 6_3:-9479315 Msa0937940:CDS
AGCATATCAACAGTGCCTTT+TGG 0.374978 6_3:+9479372 None:intergenic
ACAATCAAAATCTTTCCATT+TGG 0.388592 6_3:-9477948 Msa0937940:CDS
CCTTTCCATTTACCAAGAAA+TGG 0.388965 6_3:+9479065 None:intergenic
ACCAGTCTTTGCCTCTTGTC+AGG 0.390941 6_3:+9477905 None:intergenic
GAACATTTGATTGTAGAGAT+AGG 0.406665 6_3:+9482483 None:intergenic
ATGTTACAACCAATGTTCAT+TGG 0.412156 6_3:-9478081 Msa0937940:CDS
GAGAGTTTGGGAAGTGATGA+AGG 0.414842 6_3:+9482576 None:intergenic
AGCTTCATCAACCTTAATAT+CGG 0.425986 6_3:-9482390 Msa0937940:CDS
CACGTACGATGTTGAAGGCT+TGG 0.432694 6_3:-9477879 Msa0937940:CDS
CTTGTCAACAGTAAACATAT+TGG 0.435663 6_3:+9480238 None:intergenic
AAGTTGAAATTGGAGAGTTT+GGG 0.448384 6_3:+9482564 None:intergenic
TAATTTCAAAAGTATAGATA+TGG 0.455466 6_3:-9477562 Msa0937940:three_prime_UTR
TTTGAATTTGAATTTGATGA+TGG 0.458057 6_3:+9482507 None:intergenic
CTAACCAACAGAACTCCAAA+TGG 0.465800 6_3:+9477933 None:intergenic
AACCAATCATATTCAATCAA+TGG 0.470820 6_3:+9477743 None:intergenic
CATGCCAGGACACAGAGAAT+AGG 0.480971 6_3:-9479094 Msa0937940:intron
CCGAGAAAGCATTTGCATTG+AGG 0.482157 6_3:-9480067 Msa0937940:CDS
GAAGTGAAACAGAGCAATGA+AGG 0.482862 6_3:+9482598 None:intergenic
ATTACCTGGTGGCATGTACA+TGG 0.483394 6_3:-9478002 Msa0937940:CDS
CTTTCCATTTGGAGTTCTGT+TGG 0.486980 6_3:-9477937 Msa0937940:CDS
AATGCAAATGCTTTCTCGGA+TGG 0.491967 6_3:+9480071 None:intergenic
TGGAAACTGTATTACGGCAG+GGG 0.496002 6_3:-9480025 Msa0937940:CDS
TTATTACAACTGATTGAGAC+AGG 0.499361 6_3:+9477631 None:intergenic
ACAACCAATGTTCATTGGAC+TGG 0.500252 6_3:-9478076 Msa0937940:CDS
GAATGAGAAGAATTTATTGT+TGG 0.502531 6_3:+9482533 None:intergenic
ATGCAAATGCTTTCTCGGAT+GGG 0.503693 6_3:+9480072 None:intergenic
AGAACTATTTGGACACTTGA+GGG 0.506898 6_3:+9477817 None:intergenic
GTTCGCACGTACGATGTTGA+AGG 0.507252 6_3:-9477884 Msa0937940:CDS
GTATGTTGGAAACTGTATTA+CGG 0.507856 6_3:-9480031 Msa0937940:CDS
GATGTTACTTGTACATCTGA+TGG 0.511525 6_3:-9478109 Msa0937940:CDS
TATCTCTTTGTAAAGAGTAC+AGG 0.511529 6_3:+9479424 None:intergenic
GTATCAAACGGCTGGTATGT+TGG 0.512387 6_3:-9480045 Msa0937940:CDS
TGTAAAATACCTGAATAAGT+TGG 0.513142 6_3:+9478955 None:intergenic
GTTGGAAACTGTATTACGGC+AGG 0.523062 6_3:-9480027 Msa0937940:CDS
TTGAATTTGAATTTGATGAT+GGG 0.526384 6_3:+9482508 None:intergenic
AGATGACGATGATGCGGAAT+GGG 0.527733 6_3:-9480282 Msa0937940:CDS
ACCTGACAAGAGGCAAAGAC+TGG 0.527879 6_3:-9477906 Msa0937940:CDS
ATTTGCATTGAGGTATCAAA+CGG 0.531909 6_3:-9480057 Msa0937940:CDS
CCATTTCTTGGTAAATGGAA+AGG 0.533749 6_3:-9479065 Msa0937940:CDS
ATGTTACTTGTACATCTGAT+GGG 0.537891 6_3:-9478108 Msa0937940:CDS
GAAACTGAAGTGTTTGATGA+AGG 0.538761 6_3:+9480308 None:intergenic
AACAAGAGAAGGTCGGCGAG+AGG 0.550515 6_3:+9479458 None:intergenic
TTCCTAGAGGAACGAAGTGA+GGG 0.551395 6_3:-9479342 Msa0937940:CDS
GCATTGAGGTATCAAACGGC+TGG 0.555163 6_3:-9480053 Msa0937940:CDS
ACAAGAGAAGGTCGGCGAGA+GGG 0.557468 6_3:+9479459 None:intergenic
AAGAACTATTTGGACACTTG+AGG 0.558171 6_3:+9477816 None:intergenic
CAAACCGAAGTGGTGTCTAT+GGG 0.561656 6_3:-9479031 Msa0937940:CDS
TTGGAAACTGTATTACGGCA+GGG 0.573495 6_3:-9480026 Msa0937940:CDS
CTTCCTAGAGGAACGAAGTG+AGG 0.575142 6_3:-9479343 Msa0937940:CDS
TATCAGATGATTCTATTACC+TGG 0.580776 6_3:-9478016 Msa0937940:CDS
CATCCCATGTACATGCCACC+AGG 0.581224 6_3:+9477998 None:intergenic
GTTGAGTTGTGTTGCGACAA+TGG 0.583330 6_3:-9482628 Msa0937940:exon
GACACCACTTCGGTTTGTAA+CGG 0.583815 6_3:+9479037 None:intergenic
GCTTTCTGTTAGCTCTTATG+GGG 0.591488 6_3:-9482068 Msa0937940:CDS
GAGATGACGATGATGCGGAA+TGG 0.595696 6_3:-9480283 Msa0937940:CDS
CTTAATATCGGAAAATGGAA+CGG 0.600042 6_3:-9482378 Msa0937940:CDS
CAATTCTCACAAACAAGAGA+AGG 0.603260 6_3:+9479447 None:intergenic
AATGGATGAAAATTATGCAA+AGG 0.605211 6_3:+9477761 None:intergenic
ACCCCTCACTTCGTTCCTCT+AGG 0.605321 6_3:+9479340 None:intergenic
AATAAAATAAGTAGATGAGA+CGG 0.608181 6_3:+9477856 None:intergenic
CCAGCACTGTCAAGTAGAGG+AGG 0.612692 6_3:+9479315 None:intergenic
TTCTGGAGATGACGATGATG+CGG 0.615230 6_3:-9480288 Msa0937940:CDS
CACTTCGGTTTGTAACGGAA+CGG 0.616045 6_3:+9479042 None:intergenic
GTTCTTGGAGAAGATGACAT+TGG 0.622939 6_3:-9480002 Msa0937940:CDS
AATTTAGTCACATTTGATGG+AGG 0.624019 6_3:-9478040 Msa0937940:CDS
AAGTGAAACAGAGCAATGAA+GGG 0.624601 6_3:+9482599 None:intergenic
TCCTCTACTTGACAGTGCTG+GGG 0.624603 6_3:-9479313 Msa0937940:intron
GGAAACTGTATTACGGCAGG+GGG 0.628370 6_3:-9480024 Msa0937940:CDS
AAAGGTAAATGAGTATTACA+TGG 0.634242 6_3:+9477779 None:intergenic
GGTTAGAGACACCTGACAAG+AGG 0.634907 6_3:-9477916 Msa0937940:CDS
ACCCCAGCACTGTCAAGTAG+AGG 0.643774 6_3:+9479312 None:intergenic
TATGCTTATCATCTTCCTAG+AGG 0.644237 6_3:-9479355 Msa0937940:CDS
TCTCACAAACAAGAGAAGGT+CGG 0.653517 6_3:+9479451 None:intergenic
ACATTGGTGAAGAATCGCCT+AGG 0.655898 6_3:-9479986 Msa0937940:intron
TGTGCCAGTCCAATGAACAT+TGG 0.660969 6_3:+9478072 None:intergenic
TGTTACTTGTACATCTGATG+GGG 0.667390 6_3:-9478107 Msa0937940:CDS
TTACCTGGTGGCATGTACAT+GGG 0.668069 6_3:-9478001 Msa0937940:CDS
CAGATGATTCTATTACCTGG+TGG 0.669336 6_3:-9478013 Msa0937940:CDS
TCCTAGAGGAACGAAGTGAG+GGG 0.678973 6_3:-9479341 Msa0937940:CDS
TAGACCCATAGACACCACTT+CGG 0.688155 6_3:+9479027 None:intergenic
CGTTCCGTTACAAACCGAAG+TGG 0.693369 6_3:-9479041 Msa0937940:CDS
TTACATGAGATGAATGACAA+TGG 0.736609 6_3:-9478978 Msa0937940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATACAGTTTAAATATA+TGG + chr6_3:9481841-9481860 None:intergenic 10.0%
!! AAAGAAAACAAATATTGAAA+TGG + chr6_3:9477909-9477928 None:intergenic 15.0%
!! ATTATATGTAATCATAGTAT+CGG + chr6_3:9478009-9478028 None:intergenic 15.0%
!!! TTCAAATCATTTTCAAATAA+TGG + chr6_3:9478733-9478752 None:intergenic 15.0%
!!! ACAATTGATTTATAAAGAAA+AGG + chr6_3:9479206-9479225 None:intergenic 15.0%
!!! ATTTAACTTTTTAAGCAATT+TGG + chr6_3:9479785-9479804 None:intergenic 15.0%
!! AAATTGCTTAAAAAGTTAAA+TGG - chr6_3:9479784-9479803 Msa0937940:intron 15.0%
!! AAATCAACAAAAAAAGAATA+TGG + chr6_3:9480074-9480093 None:intergenic 15.0%
!! CACAAATAAATAACTAAATA+TGG + chr6_3:9481047-9481066 None:intergenic 15.0%
!! ATTTAGTTATTTATTTGTGA+AGG - chr6_3:9481048-9481067 Msa0937940:intron 15.0%
!! AAATTAAAACAGTTAAACAA+AGG + chr6_3:9481418-9481437 None:intergenic 15.0%
!!! TTGTTTAACTGTTTTAATTT+TGG - chr6_3:9481418-9481437 Msa0937940:intron 15.0%
!! TTCAAATGTATATGATTTAT+AGG + chr6_3:9481665-9481684 None:intergenic 15.0%
!!! TAATTTCAAAAGTATAGATA+TGG - chr6_3:9482676-9482695 Msa0937940:five_prime_UTR 15.0%
!!! TTGAATTTGAATTTGATGAT+GGG + chr6_3:9477733-9477752 None:intergenic 20.0%
!! TTTGAATTTGAATTTGATGA+TGG + chr6_3:9477734-9477753 None:intergenic 20.0%
!!! TAAAATTTTAGTGGAATGTA+AGG - chr6_3:9478627-9478646 Msa0937940:intron 20.0%
!!! TGTTAGTTTAACTAAAACTT+AGG - chr6_3:9478838-9478857 Msa0937940:intron 20.0%
!!! GTTAGTTTAACTAAAACTTA+GGG - chr6_3:9478839-9478858 Msa0937940:intron 20.0%
!! AATTACAATTAAAGATTGTG+AGG + chr6_3:9479073-9479092 None:intergenic 20.0%
!!! TAATGATCTGAAACTAAAAT+AGG + chr6_3:9479137-9479156 None:intergenic 20.0%
!!! TATTTTAGTTTCAGATCATT+AGG - chr6_3:9479136-9479155 Msa0937940:intron 20.0%
!! AAATCAATTGTTGAAAAAGA+AGG - chr6_3:9479215-9479234 Msa0937940:intron 20.0%
!!! TTAAACCACATGTTTTAAAA+TGG + chr6_3:9479478-9479497 None:intergenic 20.0%
!!! TTCTTTTTTTGTTGATTTCT+TGG - chr6_3:9480076-9480095 Msa0937940:CDS 20.0%
!! TATGCATATTAAATGTTTGT+AGG + chr6_3:9480357-9480376 None:intergenic 20.0%
!! AAATTGTGAAAATAAGTCTA+AGG + chr6_3:9480734-9480753 None:intergenic 20.0%
!!! CTTATTTTCACAATTTCTTA+TGG - chr6_3:9480738-9480757 Msa0937940:intron 20.0%
!!! TATTTGTTGAACATACTATA+CGG + chr6_3:9481504-9481523 None:intergenic 20.0%
!! AAGTTTATAACAGAAAATTG+TGG + chr6_3:9481637-9481656 None:intergenic 20.0%
!!! AATGTAATTAACCACATTTT+TGG + chr6_3:9481753-9481772 None:intergenic 20.0%
!! AAAATGTGGTTAATTACATT+CGG - chr6_3:9481753-9481772 Msa0937940:intron 20.0%
!! AATAAAATAAGTAGATGAGA+CGG + chr6_3:9482385-9482404 None:intergenic 20.0%
!! AATCAGTTGTAATAAAAAGA+TGG - chr6_3:9482615-9482634 Msa0937940:exon 20.0%
! GAATGAGAAGAATTTATTGT+TGG + chr6_3:9477708-9477727 None:intergenic 25.0%
!!! TTCTTTTGTTTATTGCTTTG+TGG - chr6_3:9477935-9477954 Msa0937940:CDS 25.0%
! TTTGCTTAAACAAACAAACA+AGG - chr6_3:9478269-9478288 Msa0937940:intron 25.0%
! TTGCTTAAACAAACAAACAA+GGG - chr6_3:9478270-9478289 Msa0937940:intron 25.0%
! AACATCTTGTGTAAAAAACA+AGG - chr6_3:9478343-9478362 Msa0937940:intron 25.0%
!! TTACACAAGATGATGTTTTT+AGG + chr6_3:9478516-9478535 None:intergenic 25.0%
! ATCATCTTGTGTAAAAAACA+TGG - chr6_3:9478522-9478541 Msa0937940:intron 25.0%
!! GTGTTTGCTTAAAATTTTAG+TGG - chr6_3:9478618-9478637 Msa0937940:intron 25.0%
! TAATAACAAAATAGCAAACC+AGG - chr6_3:9479293-9479312 Msa0937940:intron 25.0%
! TAATAGCTATCTTGGATATA+AGG + chr6_3:9479341-9479360 None:intergenic 25.0%
! TCCAAGATAGCTATTATTAA+TGG - chr6_3:9479345-9479364 Msa0937940:CDS 25.0%
! ACCATTAATAATAGCTATCT+TGG + chr6_3:9479349-9479368 None:intergenic 25.0%
!! AAAAGTTCTAATCTCATGAT+TGG + chr6_3:9479426-9479445 None:intergenic 25.0%
!! ACTTTTAGATGAAGATTAGA+CGG - chr6_3:9479440-9479459 Msa0937940:CDS 25.0%
! TATCTGCAAACTAATTGTAA+TGG + chr6_3:9480138-9480157 None:intergenic 25.0%
!!! ATTACAATTAGTTTGCAGAT+AGG - chr6_3:9480137-9480156 Msa0937940:intron 25.0%
!! TGTTTGGTTGATTTCTATTT+AGG - chr6_3:9480311-9480330 Msa0937940:CDS 25.0%
! CAAACATTTAATATGCATAG+CGG - chr6_3:9480358-9480377 Msa0937940:intron 25.0%
! AAACATTTAATATGCATAGC+GGG - chr6_3:9480359-9480378 Msa0937940:intron 25.0%
!!! GCTTTTTTATCAGAACATTT+TGG - chr6_3:9480447-9480466 Msa0937940:intron 25.0%
! TGGCATGAATTAAAAATGAA+TGG + chr6_3:9481131-9481150 None:intergenic 25.0%
!!! ATTCATTTTTAATTCATGCC+AGG - chr6_3:9481130-9481149 Msa0937940:intron 25.0%
! TGTAAAATACCTGAATAAGT+TGG + chr6_3:9481286-9481305 None:intergenic 25.0%
! ACTGCATTAAAAACATAACA+AGG + chr6_3:9481448-9481467 None:intergenic 25.0%
! TAGTATGTTCAACAAATACA+TGG - chr6_3:9481506-9481525 Msa0937940:intron 25.0%
! CATATACATTTGAACACATT+TGG - chr6_3:9481671-9481690 Msa0937940:intron 25.0%
!!! TAATTAACCACATTTTTGGA+TGG + chr6_3:9481749-9481768 None:intergenic 25.0%
! ATATGGCTAATTATGTTCAA+TGG + chr6_3:9481824-9481843 None:intergenic 25.0%
! ATTAACCATCAAAATTGTTG+TGG - chr6_3:9481858-9481877 Msa0937940:intron 25.0%
!! AATTTCCACAACAATTTTGA+TGG + chr6_3:9481866-9481885 None:intergenic 25.0%
!! AGCATTATGTATCTTCATTT+TGG - chr6_3:9481898-9481917 Msa0937940:intron 25.0%
! ACAATCAAAATCTTTCCATT+TGG - chr6_3:9482290-9482309 Msa0937940:intron 25.0%
! TCTTCACAATAAGAACTATT+TGG + chr6_3:9482435-9482454 None:intergenic 25.0%
! AAAGGTAAATGAGTATTACA+TGG + chr6_3:9482462-9482481 None:intergenic 25.0%
! AATGGATGAAAATTATGCAA+AGG + chr6_3:9482480-9482499 None:intergenic 25.0%
!! ATCCATTGATTGAATATGAT+TGG - chr6_3:9482493-9482512 Msa0937940:CDS 25.0%
! AACCAATCATATTCAATCAA+TGG + chr6_3:9482498-9482517 None:intergenic 25.0%
!! CTTTTCATGTGATATAGTTT+AGG - chr6_3:9482534-9482553 Msa0937940:CDS 25.0%
AAGTTGAAATTGGAGAGTTT+GGG + chr6_3:9477677-9477696 None:intergenic 30.0%
GAACATTTGATTGTAGAGAT+AGG + chr6_3:9477758-9477777 None:intergenic 30.0%
AGCTTCATCAACCTTAATAT+CGG - chr6_3:9477848-9477867 Msa0937940:CDS 30.0%
TCAACCTTAATATCGGAAAA+TGG - chr6_3:9477855-9477874 Msa0937940:CDS 30.0%
CTTAATATCGGAAAATGGAA+CGG - chr6_3:9477860-9477879 Msa0937940:CDS 30.0%
! TTTTTGTAGCAATTTGATGC+TGG - chr6_3:9478117-9478136 Msa0937940:intron 30.0%
TAAACAAACAAACAAGGGTA+AGG - chr6_3:9478275-9478294 Msa0937940:intron 30.0%
CTTGTGTAAAAAACAAGGTA+AGG - chr6_3:9478348-9478367 Msa0937940:intron 30.0%
TACAATACACCAAAAATGGT+GGG - chr6_3:9478376-9478395 Msa0937940:intron 30.0%
TTGTTTGTTTGTTTAAGCGA+GGG + chr6_3:9478449-9478468 None:intergenic 30.0%
TAAACAAACAAACAAGAGCA+AGG - chr6_3:9478454-9478473 Msa0937940:intron 30.0%
TAGAGTACACTAAAAATGGT+GGG - chr6_3:9478555-9478574 Msa0937940:intron 30.0%
! TTTTAAGCAAACACAGATGA+GGG + chr6_3:9478612-9478631 None:intergenic 30.0%
! ATTTTAAGCAAACACAGATG+AGG + chr6_3:9478613-9478632 None:intergenic 30.0%
! CACTAATCTAGCAGATTTTA+AGG - chr6_3:9478676-9478695 Msa0937940:intron 30.0%
TCACTTTGATATATCGTCTA+CGG - chr6_3:9478703-9478722 Msa0937940:intron 30.0%
AGATTGTGAGGCAAATTTAA+TGG + chr6_3:9479061-9479080 None:intergenic 30.0%
TAATGGTGTGATCTATTGTA+AGG - chr6_3:9479362-9479381 Msa0937940:CDS 30.0%
!!! TTCTGCCATTTTAAAACATG+TGG - chr6_3:9479470-9479489 Msa0937940:CDS 30.0%
AATTAACACAATCAAGAGCT+TGG + chr6_3:9479532-9479551 None:intergenic 30.0%
AATTAACACAATCAAGAGCT+TGG + chr6_3:9479532-9479551 None:intergenic 30.0%
GTATGCTTTGTAAGTGTTTA+AGG - chr6_3:9479808-9479827 Msa0937940:intron 30.0%
TAAGATAAGATGCCACAAAT+TGG + chr6_3:9479834-9479853 None:intergenic 30.0%
!! GCATCTTATCTTACTTTTCA+TGG - chr6_3:9479841-9479860 Msa0937940:intron 30.0%
CTTGTCAACAGTAAACATAT+TGG + chr6_3:9480003-9480022 None:intergenic 30.0%
! TGGATATTTGAAAGAAGCAT+TGG + chr6_3:9480118-9480137 None:intergenic 30.0%
! ATTTGCATTGAGGTATCAAA+CGG - chr6_3:9480181-9480200 Msa0937940:intron 30.0%
GTATGTTGGAAACTGTATTA+CGG - chr6_3:9480207-9480226 Msa0937940:intron 30.0%
GGTCAATTTCTTGCATAAAA+AGG + chr6_3:9480493-9480512 None:intergenic 30.0%
GGTCAATTTCTTGCATAAAA+AGG + chr6_3:9480493-9480512 None:intergenic 30.0%
! AAACCTCTTCATTTTAGACT+CGG - chr6_3:9480629-9480648 Msa0937940:intron 30.0%
TGAACTACCCTGTAAATAAA+AGG - chr6_3:9480682-9480701 Msa0937940:intron 30.0%
TGTGAAAATAAGTCTAAGGA+AGG + chr6_3:9480730-9480749 None:intergenic 30.0%
! TATCTCTTTGTAAAGAGTAC+AGG + chr6_3:9480817-9480836 None:intergenic 30.0%
AATAGGATTACTCCATTTCT+TGG - chr6_3:9481161-9481180 Msa0937940:intron 30.0%
TTACTCCATTTCTTGGTAAA+TGG - chr6_3:9481168-9481187 Msa0937940:intron 30.0%
TTACATGAGATGAATGACAA+TGG - chr6_3:9481260-9481279 Msa0937940:intron 30.0%
GTTAATGACGTTCAAAATTG+GGG + chr6_3:9481615-9481634 None:intergenic 30.0%
GGTTAATGACGTTCAAAATT+GGG + chr6_3:9481616-9481635 None:intergenic 30.0%
TGGTTAATGACGTTCAAAAT+TGG + chr6_3:9481617-9481636 None:intergenic 30.0%
ATACATTTGAACACATTTGG+AGG - chr6_3:9481674-9481693 Msa0937940:intron 30.0%
TACATTTGAACACATTTGGA+GGG - chr6_3:9481675-9481694 Msa0937940:intron 30.0%
TTCAAACTCCTGAAAAATTG+TGG - chr6_3:9481717-9481736 Msa0937940:intron 30.0%
!!! ATGTATCTTCATTTTGGAGT+TGG - chr6_3:9481904-9481923 Msa0937940:intron 30.0%
TATACCAACTGAACACAAAA+GGG + chr6_3:9481962-9481981 None:intergenic 30.0%
ATATACCAACTGAACACAAA+AGG + chr6_3:9481963-9481982 None:intergenic 30.0%
! ACAACAAAACTTTGAGAAAG+TGG + chr6_3:9482087-9482106 None:intergenic 30.0%
! ATGTTACTTGTACATCTGAT+GGG - chr6_3:9482130-9482149 Msa0937940:intron 30.0%
ATGTTACAACCAATGTTCAT+TGG - chr6_3:9482157-9482176 Msa0937940:intron 30.0%
GACAATTTAGTCACATTTGA+TGG - chr6_3:9482195-9482214 Msa0937940:intron 30.0%
AATTTAGTCACATTTGATGG+AGG - chr6_3:9482198-9482217 Msa0937940:intron 30.0%
TATCAGATGATTCTATTACC+TGG - chr6_3:9482222-9482241 Msa0937940:intron 30.0%
TTATTACAACTGATTGAGAC+AGG + chr6_3:9482610-9482629 None:intergenic 30.0%
!! AGTGAGCTTTTGAGTAGATA+AGG - chr6_3:9477571-9477590 Msa0937940:three_prime_UTR 35.0%
AAGTGAAACAGAGCAATGAA+GGG + chr6_3:9477642-9477661 None:intergenic 35.0%
GAAGTTGAAATTGGAGAGTT+TGG + chr6_3:9477678-9477697 None:intergenic 35.0%
! GGTAGTGTTGAAGTTGAAAT+TGG + chr6_3:9477687-9477706 None:intergenic 35.0%
! CGTTCCATTTTCCGATATTA+AGG + chr6_3:9477862-9477881 None:intergenic 35.0%
! AAGCTTTCTGTTAGCTCTTA+TGG - chr6_3:9478168-9478187 Msa0937940:intron 35.0%
! AGCTTTCTGTTAGCTCTTAT+GGG - chr6_3:9478169-9478188 Msa0937940:intron 35.0%
!! TTACACAAGATGTTGTTTCG+AGG + chr6_3:9478337-9478356 None:intergenic 35.0%
TGCGTACAATACACCAAAAA+TGG - chr6_3:9478372-9478391 Msa0937940:intron 35.0%
GTACAATACACCAAAAATGG+TGG - chr6_3:9478375-9478394 Msa0937940:intron 35.0%
CTTGTTTGTTTGTTTAAGCG+AGG + chr6_3:9478450-9478469 None:intergenic 35.0%
CTTGTGTAAAAAACATGGCA+AGG - chr6_3:9478527-9478546 Msa0937940:intron 35.0%
TGCGTAGAGTACACTAAAAA+TGG - chr6_3:9478551-9478570 Msa0937940:intron 35.0%
GTAGAGTACACTAAAAATGG+TGG - chr6_3:9478554-9478573 Msa0937940:intron 35.0%
TTTGATATATCGTCTACGGT+GGG - chr6_3:9478707-9478726 Msa0937940:intron 35.0%
AGTTGTTCTAATGAGTGAGA+TGG - chr6_3:9478803-9478822 Msa0937940:intron 35.0%
GACAGTGACTTGATTGATAT+GGG + chr6_3:9478917-9478936 None:intergenic 35.0%
AGACAGTGACTTGATTGATA+TGG + chr6_3:9478918-9478937 None:intergenic 35.0%
AAACACATGCTAAGAGAAAG+TGG - chr6_3:9479161-9479180 Msa0937940:intron 35.0%
CTATCTTGGATATAAGGAAC+TGG + chr6_3:9479335-9479354 None:intergenic 35.0%
TCTATTGTAAGGATTCAGAC+TGG - chr6_3:9479373-9479392 Msa0937940:CDS 35.0%
TTGTGTTAATCTCCATCCAA+AGG - chr6_3:9479604-9479623 Msa0937940:intron 35.0%
! AAGTGTTTAAGGCCAATTTG+TGG - chr6_3:9479819-9479838 Msa0937940:intron 35.0%
! GAAACTGAAGTGTTTGATGA+AGG + chr6_3:9479933-9479952 None:intergenic 35.0%
TCATCAAACACTTCAGTTTC+TGG - chr6_3:9479933-9479952 Msa0937940:intron 35.0%
CAGAATAAAGTCTCACTTGT+TGG + chr6_3:9480028-9480047 None:intergenic 35.0%
AGAGTTCAATTAGCACTGTT+TGG - chr6_3:9480295-9480314 Msa0937940:CDS 35.0%
! GTCATCTAAAATGAAGAGCT+TGG + chr6_3:9480535-9480554 None:intergenic 35.0%
TATGACATGTAAGACTCGTT+TGG - chr6_3:9480587-9480606 Msa0937940:intron 35.0%
! AACCTCTTCATTTTAGACTC+GGG - chr6_3:9480630-9480649 Msa0937940:intron 35.0%
CAATTCTCACAAACAAGAGA+AGG + chr6_3:9480794-9480813 None:intergenic 35.0%
!!! TTTTGGCTCCAAAATGTGAA+AGG + chr6_3:9480852-9480871 None:intergenic 35.0%
!!! TTTCACATTTTGGAGCCAAA+AGG - chr6_3:9480851-9480870 Msa0937940:intron 35.0%
TATGCTTATCATCTTCCTAG+AGG - chr6_3:9480883-9480902 Msa0937940:intron 35.0%
CCTTTCCATTTACCAAGAAA+TGG + chr6_3:9481176-9481195 None:intergenic 35.0%
CCATTTCTTGGTAAATGGAA+AGG - chr6_3:9481173-9481192 Msa0937940:intron 35.0%
GGTTAATTGTGTTCAGTTGA+TGG + chr6_3:9481594-9481613 None:intergenic 35.0%
! GGCATTAACCACAATTTTTC+AGG + chr6_3:9481728-9481747 None:intergenic 35.0%
GTTAATGCCATCCAAAAATG+TGG - chr6_3:9481739-9481758 Msa0937940:intron 35.0%
ATGTGGTTAATTACATTCGG+TGG - chr6_3:9481756-9481775 Msa0937940:intron 35.0%
!! TTTGTTGTTGATGCTGCTAT+TGG - chr6_3:9482099-9482118 Msa0937940:intron 35.0%
! GATGTTACTTGTACATCTGA+TGG - chr6_3:9482129-9482148 Msa0937940:intron 35.0%
! TGTTACTTGTACATCTGATG+GGG - chr6_3:9482131-9482150 Msa0937940:intron 35.0%
!! ACACTTTTTGCTACATCACA+AGG + chr6_3:9482267-9482286 None:intergenic 35.0%
TTGTGATGTAGCAAAAAGTG+TGG - chr6_3:9482266-9482285 Msa0937940:intron 35.0%
AGAACTATTTGGACACTTGA+GGG + chr6_3:9482424-9482443 None:intergenic 35.0%
AAGAACTATTTGGACACTTG+AGG + chr6_3:9482425-9482444 None:intergenic 35.0%
GAAGTGAAACAGAGCAATGA+AGG + chr6_3:9477643-9477662 None:intergenic 40.0%
!! TCATAGTATCGGTGTCATGT+TGG + chr6_3:9477998-9478017 None:intergenic 40.0%
TGAGTGCTTCGTTTATTGAG+AGG - chr6_3:9478067-9478086 Msa0937940:CDS 40.0%
GAGTGCTTCGTTTATTGAGA+GGG - chr6_3:9478068-9478087 Msa0937940:CDS 40.0%
TTGTAGCAATTTGATGCTGG+CGG - chr6_3:9478120-9478139 Msa0937940:intron 40.0%
! GCTTTCTGTTAGCTCTTATG+GGG - chr6_3:9478170-9478189 Msa0937940:intron 40.0%
CTTTGATATATCGTCTACGG+TGG - chr6_3:9478706-9478725 Msa0937940:intron 40.0%
! GGGACAACATTGGTTATCAT+TGG + chr6_3:9478759-9478778 None:intergenic 40.0%
TGATAACCAATGTTGTCCCT+TGG - chr6_3:9478760-9478779 Msa0937940:intron 40.0%
CTGTGAGTTTCTACTTCCAA+GGG + chr6_3:9478779-9478798 None:intergenic 40.0%
ACTGTGAGTTTCTACTTCCA+AGG + chr6_3:9478780-9478799 None:intergenic 40.0%
AGGGTAATGAGTGTAAGTTG+AGG - chr6_3:9478858-9478877 Msa0937940:intron 40.0%
GTTGTCTAATCTCCATCCAA+AGG - chr6_3:9479504-9479523 Msa0937940:intron 40.0%
AATCAAGAGCTTGGAACCTT+TGG + chr6_3:9479523-9479542 None:intergenic 40.0%
AATCAAGAGCTTGGAACCTT+TGG + chr6_3:9479523-9479542 None:intergenic 40.0%
TGTTTAATGTACAGCCTGCA+GGG + chr6_3:9479909-9479928 None:intergenic 40.0%
TTGTTTAATGTACAGCCTGC+AGG + chr6_3:9479910-9479929 None:intergenic 40.0%
GTGAGACTTTATTCTGTTGC+TGG - chr6_3:9480032-9480051 Msa0937940:CDS 40.0%
ATGCAAATGCTTTCTCGGAT+GGG + chr6_3:9480169-9480188 None:intergenic 40.0%
AATGCAAATGCTTTCTCGGA+TGG + chr6_3:9480170-9480189 None:intergenic 40.0%
CCTCAATGCAAATGCTTTCT+CGG + chr6_3:9480174-9480193 None:intergenic 40.0%
TTGGAAACTGTATTACGGCA+GGG - chr6_3:9480212-9480231 Msa0937940:intron 40.0%
GTTCTTGGAGAAGATGACAT+TGG - chr6_3:9480236-9480255 Msa0937940:CDS 40.0%
! CATTTAATATGCATAGCGGG+TGG - chr6_3:9480362-9480381 Msa0937940:intron 40.0%
! AACCCGAGTCTAAAATGAAG+AGG + chr6_3:9480635-9480654 None:intergenic 40.0%
!! GTGTGCGCCTTTTATTTACA+GGG + chr6_3:9480692-9480711 None:intergenic 40.0%
!! TGTGTGCGCCTTTTATTTAC+AGG + chr6_3:9480693-9480712 None:intergenic 40.0%
TCTCACAAACAAGAGAAGGT+CGG + chr6_3:9480790-9480809 None:intergenic 40.0%
! AGCAAGAGCCTTTCACATTT+TGG - chr6_3:9480841-9480860 Msa0937940:intron 40.0%
! AGCATATCAACAGTGCCTTT+TGG + chr6_3:9480869-9480888 None:intergenic 40.0%
TAATCCTATTCTCTGTGTCC+TGG + chr6_3:9481151-9481170 None:intergenic 40.0%
TGACAATGGCCAACTTATTC+AGG - chr6_3:9481274-9481293 Msa0937940:intron 40.0%
ACGCAGCAGTAAGAGTTATT+AGG + chr6_3:9481310-9481329 None:intergenic 40.0%
AATAACTCTTACTGCTGCGT+AGG - chr6_3:9481310-9481329 Msa0937940:intron 40.0%
TAGTACTAGACCAACTATCG+AGG + chr6_3:9481475-9481494 None:intergenic 40.0%
TGATGCTGCTATTGGAAATC+AGG - chr6_3:9482107-9482126 Msa0937940:intron 40.0%
ACAACCAATGTTCATTGGAC+TGG - chr6_3:9482162-9482181 Msa0937940:intron 40.0%
CAGATGATTCTATTACCTGG+TGG - chr6_3:9482225-9482244 Msa0937940:intron 40.0%
! CTTTCCATTTGGAGTTCTGT+TGG - chr6_3:9482301-9482320 Msa0937940:intron 40.0%
CTAACCAACAGAACTCCAAA+TGG + chr6_3:9482308-9482327 None:intergenic 40.0%
! GTTGAGTTGTGTTGCGACAA+TGG - chr6_3:9477610-9477629 Msa0937940:three_prime_UTR 45.0%
GAGAGTTTGGGAAGTGATGA+AGG + chr6_3:9477665-9477684 None:intergenic 45.0%
!! TATCGGTGTCATGTTGGTGT+CGG + chr6_3:9477992-9478011 None:intergenic 45.0%
TGCTTCGTTTATTGAGAGGG+AGG - chr6_3:9478071-9478090 Msa0937940:CDS 45.0%
TGTAGCAATTTGATGCTGGC+GGG - chr6_3:9478121-9478140 Msa0937940:intron 45.0%
GATGTTGTCACGTGACTGAA+CGG - chr6_3:9478297-9478316 Msa0937940:intron 45.0%
! AAAAATGGTGGGACACTTCC+CGG - chr6_3:9478387-9478406 Msa0937940:intron 45.0%
CTCATGCATACACAGTTTCC+GGG + chr6_3:9478408-9478427 None:intergenic 45.0%
GCTCATGCATACACAGTTTC+CGG + chr6_3:9478409-9478428 None:intergenic 45.0%
GTCACGTGACTGAAATGTCA+CGG - chr6_3:9478482-9478501 Msa0937940:intron 45.0%
TCACGTGACTGAAATGTCAC+GGG - chr6_3:9478483-9478502 Msa0937940:intron 45.0%
CTACTTCCAAGGGACAACAT+TGG + chr6_3:9478769-9478788 None:intergenic 45.0%
AAGTCACTGTCTCACTCACA+AGG - chr6_3:9478926-9478945 Msa0937940:intron 45.0%
CTTTGACAGGTGGTTCGATA+TGG + chr6_3:9479031-9479050 None:intergenic 45.0%
TATCGAACCACCTGTCAAAG+TGG - chr6_3:9479031-9479050 Msa0937940:CDS 45.0%
TAATGGTGCACCACTTTGAC+AGG + chr6_3:9479044-9479063 None:intergenic 45.0%
AAGAGCTTGGAACCTTTGGA+TGG + chr6_3:9479519-9479538 None:intergenic 45.0%
CTTTGGATGCTTGGAACCTT+TGG + chr6_3:9479623-9479642 None:intergenic 45.0%
CAAAGGTTCCAAGCATCCAA+AGG - chr6_3:9479621-9479640 Msa0937940:intron 45.0%
! TTCTGGAGATGACGATGATG+CGG - chr6_3:9479950-9479969 Msa0937940:intron 45.0%
AGATGACGATGATGCGGAAT+GGG - chr6_3:9479956-9479975 Msa0937940:intron 45.0%
!! CCGAGAAAGCATTTGCATTG+AGG - chr6_3:9480171-9480190 Msa0937940:intron 45.0%
GTATCAAACGGCTGGTATGT+TGG - chr6_3:9480193-9480212 Msa0937940:intron 45.0%
GTTGGAAACTGTATTACGGC+AGG - chr6_3:9480211-9480230 Msa0937940:intron 45.0%
TGGAAACTGTATTACGGCAG+GGG - chr6_3:9480213-9480232 Msa0937940:intron 45.0%
ACATTGGTGAAGAATCGCCT+AGG - chr6_3:9480252-9480271 Msa0937940:CDS 45.0%
CGAGAACGAATCACTTACCT+AGG + chr6_3:9480272-9480291 None:intergenic 45.0%
! TAGCGGGTGGAAATAGTTAC+AGG - chr6_3:9480375-9480394 Msa0937940:intron 45.0%
AGCAAGTTCTGTCTACACGA+TGG + chr6_3:9480424-9480443 None:intergenic 45.0%
GACATGTAAGACTCGTTTGG+TGG - chr6_3:9480590-9480609 Msa0937940:intron 45.0%
! ACTCGTTTGGTGGACAGAAT+AGG - chr6_3:9480600-9480619 Msa0937940:intron 45.0%
TTCCTAGAGGAACGAAGTGA+GGG - chr6_3:9480896-9480915 Msa0937940:intron 45.0%
! CACTTCGGTTTGTAACGGAA+CGG + chr6_3:9481199-9481218 None:intergenic 45.0%
! GACACCACTTCGGTTTGTAA+CGG + chr6_3:9481204-9481223 None:intergenic 45.0%
ACAAACCGAAGTGGTGTCTA+TGG - chr6_3:9481206-9481225 Msa0937940:intron 45.0%
CAAACCGAAGTGGTGTCTAT+GGG - chr6_3:9481207-9481226 Msa0937940:intron 45.0%
TAGACCCATAGACACCACTT+CGG + chr6_3:9481214-9481233 None:intergenic 45.0%
TTACTGCTGCGTAGGTATAC+TGG - chr6_3:9481318-9481337 Msa0937940:intron 45.0%
! TGCAGTTTTGCCTCGATAGT+TGG - chr6_3:9481462-9481481 Msa0937940:intron 45.0%
ACATGGCTAATGACTTTCGC+TGG - chr6_3:9481523-9481542 Msa0937940:intron 45.0%
! TCCACCCTTTTGTGTTCAGT+TGG - chr6_3:9481955-9481974 Msa0937940:intron 45.0%
ACCAACTGAACACAAAAGGG+TGG + chr6_3:9481959-9481978 None:intergenic 45.0%
TGTGCCAGTCCAATGAACAT+TGG + chr6_3:9482169-9482188 None:intergenic 45.0%
ATTACCTGGTGGCATGTACA+TGG - chr6_3:9482236-9482255 Msa0937940:intron 45.0%
TTACCTGGTGGCATGTACAT+GGG - chr6_3:9482237-9482256 Msa0937940:intron 45.0%
TGTGGCACTCTTCTGATCGA+AGG - chr6_3:9477953-9477972 Msa0937940:CDS 50.0%
AGCACTCACACTGACAACAC+TGG + chr6_3:9478055-9478074 None:intergenic 50.0%
!!! GGGAAGTGTCCCACCATTTT+TGG + chr6_3:9478388-9478407 None:intergenic 50.0%
! CTGCAAGAGCTTTAGTGCAC+CGG - chr6_3:9478582-9478601 Msa0937940:intron 50.0%
! TGCAAGAGCTTTAGTGCACC+GGG - chr6_3:9478583-9478602 Msa0937940:intron 50.0%
TCTACTTCCAGCCAGTACCA+CGG - chr6_3:9478968-9478987 Msa0937940:CDS 50.0%
TGAAACTCAATGACGACCCG+TGG + chr6_3:9478988-9479007 None:intergenic 50.0%
GGCGAAATTTCAGATGCACC+TGG + chr6_3:9479314-9479333 None:intergenic 50.0%
! GTAAGGATTCAGACTGGCTG+TGG - chr6_3:9479379-9479398 Msa0937940:CDS 50.0%
GGATGCTTGGAACCTTTGGA+TGG + chr6_3:9479619-9479638 None:intergenic 50.0%
GCTTGGAACCTTTGGATGCT+TGG + chr6_3:9479632-9479651 None:intergenic 50.0%
TGTACAGATGTGTTCCCTGC+AGG - chr6_3:9479892-9479911 Msa0937940:intron 50.0%
GAGATGACGATGATGCGGAA+TGG - chr6_3:9479955-9479974 Msa0937940:intron 50.0%
! GCATTGAGGTATCAAACGGC+TGG - chr6_3:9480185-9480204 Msa0937940:intron 50.0%
GGAAACTGTATTACGGCAGG+GGG - chr6_3:9480214-9480233 Msa0937940:intron 50.0%
CTTCCTAGAGGAACGAAGTG+AGG - chr6_3:9480895-9480914 Msa0937940:intron 50.0%
TCCTAGAGGAACGAAGTGAG+GGG - chr6_3:9480897-9480916 Msa0937940:intron 50.0%
CTCCTCTACTTGACAGTGCT+GGG - chr6_3:9480924-9480943 Msa0937940:intron 50.0%
TCCTCTACTTGACAGTGCTG+GGG - chr6_3:9480925-9480944 Msa0937940:intron 50.0%
TGTGTGCGAAAATCGGCAGT+AGG + chr6_3:9481003-9481022 None:intergenic 50.0%
!!! TGCCGATTTTCGCACACACA+CGG - chr6_3:9481005-9481024 Msa0937940:intron 50.0%
CATGCCAGGACACAGAGAAT+AGG - chr6_3:9481144-9481163 Msa0937940:intron 50.0%
CGTTCCGTTACAAACCGAAG+TGG - chr6_3:9481197-9481216 Msa0937940:intron 50.0%
TGGGTGGAGAGAAGATTGTG+TGG + chr6_3:9481930-9481949 None:intergenic 50.0%
CACAAAAGGGTGGAGCGAAT+GGG + chr6_3:9481949-9481968 None:intergenic 50.0%
ACACAAAAGGGTGGAGCGAA+TGG + chr6_3:9481950-9481969 None:intergenic 50.0%
GGTTAGAGACACCTGACAAG+AGG - chr6_3:9482322-9482341 Msa0937940:intron 50.0%
ACCTGACAAGAGGCAAAGAC+TGG - chr6_3:9482332-9482351 Msa0937940:intron 50.0%
ACCAGTCTTTGCCTCTTGTC+AGG + chr6_3:9482336-9482355 None:intergenic 50.0%
GTTCGCACGTACGATGTTGA+AGG - chr6_3:9482354-9482373 Msa0937940:intron 50.0%
CACGTACGATGTTGAAGGCT+TGG - chr6_3:9482359-9482378 Msa0937940:intron 50.0%
CGGTGCACTAAAGCTCTTGC+AGG + chr6_3:9478584-9478603 None:intergenic 55.0%
AAACACAGATGAGGGCAGCC+CGG + chr6_3:9478604-9478623 None:intergenic 55.0%
TCTCACTCACAAGGACGACG+AGG - chr6_3:9478935-9478954 Msa0937940:intron 55.0%
CTCACTCACAAGGACGACGA+GGG - chr6_3:9478936-9478955 Msa0937940:intron 55.0%
CTACTTCCAGCCAGTACCAC+GGG - chr6_3:9478969-9478988 Msa0937940:CDS 55.0%
TCAATGACGACCCGTGGTAC+TGG + chr6_3:9478982-9479001 None:intergenic 55.0%
TGGTGCACCACTTTGACAGG+TGG + chr6_3:9479041-9479060 None:intergenic 55.0%
! GGATTCAGACTGGCTGTGGT+CGG - chr6_3:9479383-9479402 Msa0937940:CDS 55.0%
GTGTGCTTTCGAGACTGCAG+AGG - chr6_3:9479552-9479571 Msa0937940:intron 55.0%
GTATTACGGCAGGGGGTTCT+TGG - chr6_3:9480221-9480240 Msa0937940:intron 55.0%
ACAAGAGAAGGTCGGCGAGA+GGG + chr6_3:9480782-9480801 None:intergenic 55.0%
AACAAGAGAAGGTCGGCGAG+AGG + chr6_3:9480783-9480802 None:intergenic 55.0%
ACCCCTCACTTCGTTCCTCT+AGG + chr6_3:9480901-9480920 None:intergenic 55.0%
CCAGCACTGTCAAGTAGAGG+AGG + chr6_3:9480926-9480945 None:intergenic 55.0%
CCTCCTCTACTTGACAGTGC+TGG - chr6_3:9480923-9480942 Msa0937940:intron 55.0%
ACCCCAGCACTGTCAAGTAG+AGG + chr6_3:9480929-9480948 None:intergenic 55.0%
!! GCCGATTTTCGCACACACAC+GGG - chr6_3:9481006-9481025 Msa0937940:intron 55.0%
GCCCGTGTGTGTGCGAAAAT+CGG + chr6_3:9481010-9481029 None:intergenic 55.0%
AAAAGGGTGGAGCGAATGGG+TGG + chr6_3:9481946-9481965 None:intergenic 55.0%
CATCCCATGTACATGCCACC+AGG + chr6_3:9482243-9482262 None:intergenic 55.0%
!! TGACGACCCGTGGTACTGGC+TGG + chr6_3:9478978-9478997 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 9477561 9482699 9477561 ID=Msa0937940;Name=Msa0937940
chr6_3 mRNA 9477561 9482699 9477561 ID=Msa0937940-mRNA-1;Parent=Msa0937940;Name=Msa0937940-mRNA-1;_AED=0.35;_eAED=0.35;_QI=68|0.83|0.85|1|0.66|0.85|7|280|388
chr6_3 exon 9477561 9478131 9477561 ID=Msa0937940-mRNA-1:exon:3051;Parent=Msa0937940-mRNA-1
chr6_3 exon 9478965 9479108 9478965 ID=Msa0937940-mRNA-1:exon:3050;Parent=Msa0937940-mRNA-1
chr6_3 exon 9479314 9479494 9479314 ID=Msa0937940-mRNA-1:exon:3049;Parent=Msa0937940-mRNA-1
chr6_3 exon 9479987 9480105 9479987 ID=Msa0937940-mRNA-1:exon:3048;Parent=Msa0937940-mRNA-1
chr6_3 exon 9480229 9480346 9480229 ID=Msa0937940-mRNA-1:exon:3047;Parent=Msa0937940-mRNA-1
chr6_3 exon 9482040 9482089 9482040 ID=Msa0937940-mRNA-1:exon:3046;Parent=Msa0937940-mRNA-1
chr6_3 exon 9482368 9482699 9482368 ID=Msa0937940-mRNA-1:exon:3045;Parent=Msa0937940-mRNA-1
chr6_3 five_prime_UTR 9482632 9482699 9482632 ID=Msa0937940-mRNA-1:five_prime_utr;Parent=Msa0937940-mRNA-1
chr6_3 CDS 9482368 9482631 9482368 ID=Msa0937940-mRNA-1:cds;Parent=Msa0937940-mRNA-1
chr6_3 CDS 9482040 9482089 9482040 ID=Msa0937940-mRNA-1:cds;Parent=Msa0937940-mRNA-1
chr6_3 CDS 9480229 9480346 9480229 ID=Msa0937940-mRNA-1:cds;Parent=Msa0937940-mRNA-1
chr6_3 CDS 9479987 9480105 9479987 ID=Msa0937940-mRNA-1:cds;Parent=Msa0937940-mRNA-1
chr6_3 CDS 9479314 9479494 9479314 ID=Msa0937940-mRNA-1:cds;Parent=Msa0937940-mRNA-1
chr6_3 CDS 9478965 9479108 9478965 ID=Msa0937940-mRNA-1:cds;Parent=Msa0937940-mRNA-1
chr6_3 CDS 9477841 9478131 9477841 ID=Msa0937940-mRNA-1:cds;Parent=Msa0937940-mRNA-1
chr6_3 three_prime_UTR 9477561 9477840 9477561 ID=Msa0937940-mRNA-1:three_prime_utr;Parent=Msa0937940-mRNA-1
Gene Sequence

>Msa0937940

ATGGCTTCTTCCCTTCATTGCTCTGTTTCACTTCCTTCATCACTTCCCAAACTCTCCAATTTCAACTTCAACACTACCAACAATAAATTCTTCTCATTCAACCCATCATCAAATTCAAATTCAAATCCTATCTCTACAATCAAATGTTCAGCTTCTTCTTTTTCATCTTTCTCTTCAACATCACTTGATGAAACTGCTATGAGCATTGAAAATCTACGTAGCTTCATCAACCTTAATATCGGAAAATGGAACGGTTCTTTCTATCTTTCTGTTAGCTCTTATGGGGAAGATGAACTCATGAGTCTCATTCAATCGCTGTACATTAAACAACCTTCATCAAACACTTCAGTTTCTGGAGATGACGATGATGCGGAATGGGCAGAGTACAAAATTAAAGAAACCAATATGTTTACTGTTGACAAGTACCAACAAATAGGCTTTTTCCCATCCGAGAAAGCATTTGCATTGAGGTATCAAACGGCTGGTATGTTGGAAACTGTATTACGGCAGGGGGTTCTTGGAGAAGATGACATTGGTGAAGAATCGCCTAGAAATCTCAAACTTCCCTCTCGCCGACCTTCTCTTGTTTGTGAGAATTGCCTGTACTCTTTACAAAGAGATATGCGAGCAAGAGCCTTTCACATTTTGGAGCCAAAAGGCACTGTTGATATGCTTATCATCTTCCTAGAGGAACGAAGTGAGGGGTCTCCTCCTCTACTTGACAGTGCTGGGGACACAGAGAATAGGATTACTCCATTTCTTGGTAAATGGAAAGGCCGTTCCGTTACAAACCGAAGTGGTGTCTATGGGTCTACGATTTCTGAAGCAGATACAGTTGTGTTACATGAGATGAATGACAATGGCCAACTTATTCAGGATGTTACTTGTACATCTGATGGGGCAAATGTTACAACCAATGTTCATTGGACTGGCACAATATCAGACAATTTAGTCACATTTGATGGAGGTTATCAGATGATTCTATTACCTGGTGGCATGTACATGGGATGTCCTTGTGATGTAGCAAAAAGTGTGGCACAATCAAAATCTTTCCATTTGGAGTTCTGTTGGTTAGAGACACCTGACAAGAGGCAAAGACTGGTTCGCACGTACGATGTTGAAGGCTTGGCCGTCTCATCTACTTATTTTATTGAGACAAAATTGTGA

Protein sequence

>Msa0937940

MASSLHCSVSLPSSLPKLSNFNFNTTNNKFFSFNPSSNSNSNPISTIKCSASSFSSFSSTSLDETAMSIENLRSFINLNIGKWNGSFYLSVSSYGEDELMSLIQSLYIKQPSSNTSVSGDDDDAEWAEYKIKETNMFTVDKYQQIGFFPSEKAFALRYQTAGMLETVLRQGVLGEDDIGEESPRNLKLPSRRPSLVCENCLYSLQRDMRARAFHILEPKGTVDMLIIFLEERSEGSPPLLDSAGDTENRITPFLGKWKGRSVTNRSGVYGSTISEADTVVLHEMNDNGQLIQDVTCTSDGANVTTNVHWTGTISDNLVTFDGGYQMILLPGGMYMGCPCDVAKSVAQSKSFHLEFCWLETPDKRQRLVRTYDVEGLAVSSTYFIETKL*