AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1188890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188890 MtrunA17_Chr8g0357211 95.890 219 9 0 1 219 1 219 3.12e-155 429
Msa1188890 MtrunA17_Chr8g0357241 95.434 219 10 0 1 219 1 219 4.48e-155 428
Msa1188890 MtrunA17_Chr2g0312681 64.840 219 77 0 1 219 1 219 3.16e-103 297
Msa1188890 MtrunA17_Chr2g0312771 64.384 219 78 0 1 219 1 219 1.58e-102 295
Msa1188890 MtrunA17_Chr2g0312751 64.840 219 77 0 1 219 1 219 3.40e-102 295
Msa1188890 MtrunA17_Chr2g0312691 64.840 219 77 0 1 219 1 219 3.47e-102 295
Msa1188890 MtrunA17_Chr2g0312781 63.084 214 79 0 1 214 18 231 1.63e-97 283
Msa1188890 MtrunA17_Chr2g0312731 58.447 219 91 0 1 219 1 219 2.31e-94 275
Msa1188890 MtrunA17_Chr2g0312711 61.644 219 83 1 1 219 1 218 4.68e-93 271
Msa1188890 MtrunA17_Chr2g0312791 60.550 218 84 2 1 216 1 218 4.69e-91 266
Msa1188890 MtrunA17_Chr2g0312811 59.722 216 85 1 1 214 1 216 4.00e-90 264
Msa1188890 MtrunA17_Chr3g0107731 54.884 215 97 0 5 219 10 224 3.98e-89 261
Msa1188890 MtrunA17_Chr3g0107741 54.378 217 99 0 3 219 8 224 1.53e-88 260
Msa1188890 MtrunA17_Chr2g0312721 57.416 209 89 0 1 209 1 209 4.90e-83 246
Msa1188890 MtrunA17_Chr4g0069471 63.934 183 63 2 1 182 22 202 4.79e-81 240
Msa1188890 MtrunA17_Chr5g0433801 51.869 214 101 2 2 214 4 216 5.60e-73 221
Msa1188890 MtrunA17_Chr4g0008781 39.234 209 122 4 3 208 7 213 8.47e-45 149
Msa1188890 MtrunA17_Chr7g0240681 39.545 220 126 5 3 217 6 223 1.17e-44 148
Msa1188890 MtrunA17_Chr7g0240641 39.450 218 124 5 3 217 6 218 3.49e-44 147
Msa1188890 MtrunA17_Chr7g0240691 42.381 210 115 4 3 208 36 243 5.07e-44 148
Msa1188890 MtrunA17_Chr7g0240631 38.073 218 127 5 3 217 6 218 7.93e-44 146
Msa1188890 MtrunA17_Chr8g0379581 36.239 218 136 2 2 217 3 219 1.24e-43 145
Msa1188890 MtrunA17_Chr3g0132581 47.159 176 91 2 1 175 1 175 1.39e-43 145
Msa1188890 MtrunA17_Chr4g0029341 39.906 213 123 3 1 209 1 212 3.33e-43 144
Msa1188890 MtrunA17_Chr1g0196661 40.394 203 116 3 11 209 10 211 9.39e-43 144
Msa1188890 MtrunA17_Chr7g0240611 45.699 186 96 5 3 187 6 187 2.08e-42 142
Msa1188890 MtrunA17_Chr5g0415411 41.176 221 115 7 2 210 3 220 9.41e-42 141
Msa1188890 MtrunA17_Chr4g0008791 40.704 199 113 4 4 199 7 203 1.77e-41 140
Msa1188890 MtrunA17_Chr5g0417011 35.610 205 125 2 2 199 5 209 1.79e-41 140
Msa1188890 MtrunA17_Chr7g0240531 40.670 209 114 6 13 217 16 218 1.72e-40 138
Msa1188890 MtrunA17_Chr7g0240541 38.942 208 119 5 13 217 16 218 4.04e-40 137
Msa1188890 MtrunA17_Chr7g0240671 48.428 159 79 3 1 158 1 157 1.05e-39 135
Msa1188890 MtrunA17_Chr8g0379561 40.000 185 108 2 3 185 5 188 1.14e-39 135
Msa1188890 MtrunA17_Chr6g0483141 39.320 206 115 5 18 216 17 219 2.00e-38 132
Msa1188890 MtrunA17_Chr7g0240561 37.799 209 120 6 13 217 16 218 2.29e-38 132
Msa1188890 MtrunA17_Chr7g0240511 39.904 208 112 7 13 217 16 213 3.18e-38 132
Msa1188890 MtrunA17_Chr1g0196721 41.089 202 114 3 11 208 9 209 1.00e-37 130
Msa1188890 MtrunA17_Chr8g0363751 40.909 198 108 5 7 195 8 205 1.21e-37 130
Msa1188890 MtrunA17_Chr7g0240551 37.500 208 122 5 13 217 16 218 2.23e-37 130
Msa1188890 MtrunA17_Chr1g0212301 39.604 202 112 4 7 201 6 204 2.76e-37 129
Msa1188890 MtrunA17_Chr1g0196771 36.530 219 131 5 3 216 2 217 5.33e-37 129
Msa1188890 MtrunA17_Chr7g0240651 47.771 157 79 3 3 158 6 160 1.10e-36 128
Msa1188890 MtrunA17_Chr1g0196691 38.140 215 119 5 4 209 28 237 1.80e-36 128
Msa1188890 MtrunA17_Chr7g0240581 41.799 189 103 5 3 187 6 191 4.28e-36 126
Msa1188890 MtrunA17_Chr1g0196711 40.099 202 116 4 11 208 10 210 9.51e-36 125
Msa1188890 MtrunA17_Chr7g0240661 48.387 155 77 3 3 156 6 158 8.51e-35 123
Msa1188890 MtrunA17_Chr7g0240521 38.298 188 111 4 3 187 13 198 3.93e-33 119
Msa1188890 MtrunA17_Chr8g0391631 41.447 152 82 4 7 151 24 175 2.15e-29 107
Msa1188890 MtrunA17_Chr2g0313561 63.889 72 26 0 47 118 1 72 8.86e-28 100
Msa1188890 MtrunA17_Chr5g0415421 45.205 73 38 2 28 98 11 83 1.94e-11 59.3
Msa1188890 MtrunA17_Chr7g0263221 27.700 213 136 8 10 216 32 232 3.88e-11 60.8
Msa1188890 MtrunA17_Chr4g0076691 28.070 171 106 5 3 159 14 181 4.69e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188890 AT1G78380.1 64.815 216 76 0 1 216 1 216 3.82e-100 290
Msa1188890 AT1G78370.1 60.465 215 85 0 1 215 1 215 7.15e-96 279
Msa1188890 AT1G17170.1 61.644 219 83 1 1 219 1 218 8.62e-96 278
Msa1188890 AT1G17180.1 59.817 219 88 0 1 219 1 219 4.25e-94 275
Msa1188890 AT1G78340.1 61.215 214 83 0 1 214 1 214 8.63e-94 273
Msa1188890 AT1G78360.1 59.545 220 88 1 1 219 1 220 7.10e-92 269
Msa1188890 AT1G78320.1 59.346 214 87 0 1 214 1 214 6.78e-88 259
Msa1188890 AT1G17190.1 55.607 214 95 0 3 216 4 217 7.57e-85 251
Msa1188890 AT1G53680.1 52.995 217 100 2 5 219 8 224 1.16e-82 246
Msa1188890 AT3G43800.1 51.818 220 102 3 3 218 4 223 1.18e-71 218
Msa1188890 AT1G78320.2 50.467 214 79 1 1 214 1 187 1.85e-67 206
Msa1188890 AT2G29420.1 40.541 222 118 6 2 217 7 220 7.76e-48 157
Msa1188890 AT3G09270.1 47.594 187 95 2 3 186 5 191 5.56e-47 155
Msa1188890 AT1G10370.1 39.352 216 123 4 2 209 3 218 1.20e-44 149
Msa1188890 AT2G29460.1 47.205 161 81 2 3 160 6 165 8.55e-43 144
Msa1188890 AT1G74590.1 34.545 220 132 4 5 215 8 224 1.35e-42 144
Msa1188890 AT2G29480.1 45.963 161 83 2 3 160 6 165 2.61e-42 143
Msa1188890 AT1G10360.1 39.013 223 125 5 2 216 3 222 4.89e-42 142
Msa1188890 AT2G29490.1 46.584 161 82 2 3 160 6 165 1.02e-41 141
Msa1188890 AT2G29450.1 49.080 163 76 4 3 160 5 165 4.88e-41 139
Msa1188890 AT2G29440.1 47.879 165 74 4 3 160 5 164 6.15e-41 139
Msa1188890 AT1G59700.1 41.014 217 117 6 3 209 5 220 7.06e-41 139
Msa1188890 AT2G29470.1 38.426 216 126 5 7 217 10 223 8.06e-41 139
Msa1188890 AT1G59670.1 39.640 222 125 5 3 215 5 226 7.18e-39 134
Msa1188890 AT1G27130.1 37.441 211 123 4 7 208 9 219 1.77e-38 133
Msa1188890 AT5G62480.1 33.182 220 137 2 5 214 9 228 2.22e-38 133
Msa1188890 AT1G27140.1 39.512 205 114 4 15 209 17 221 3.58e-37 130
Msa1188890 AT1G69930.1 35.885 209 127 3 7 208 15 223 6.58e-36 127
Msa1188890 AT1G69920.1 35.426 223 128 6 7 218 37 254 5.46e-34 122
Msa1188890 AT5G62480.3 29.050 179 92 2 5 175 9 160 7.63e-21 87.0
Msa1188890 AT5G62480.2 29.050 179 93 2 5 175 9 161 1.13e-20 86.7

Find 58 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGCTCAAGCCAGATTT+TGG 0.160142 8_1:-29640226 Msa1188890:CDS
AACTCCTCTGCCATTGTTAA+AGG 0.207479 8_1:+29640506 None:intergenic
AGGATAGCATTGGCTGAAAA+AGG 0.234872 8_1:-29640440 Msa1188890:CDS
ATAATTATGGACTCAGAAAT+TGG 0.235033 8_1:+29640311 None:intergenic
ACTTATTTGTATAACTATAT+TGG 0.246318 8_1:+29639327 None:intergenic
CTTGGAGACCAACCTTATTT+TGG 0.247910 8_1:-29639668 Msa1188890:CDS
GGCAGAGGAGTTGATATTAT+TGG 0.258303 8_1:-29640495 Msa1188890:CDS
GGAGTTGATTGAAGGCTTAA+AGG 0.261757 8_1:-29639705 Msa1188890:CDS
AATATACTCAACAATAATTA+TGG 0.276052 8_1:+29640298 None:intergenic
AAAACGCAGGTTGGTGATAT+TGG 0.283609 8_1:-29639776 Msa1188890:intron
CTGGAATCTTCTTGTGAATT+GGG 0.294128 8_1:+29640354 None:intergenic
ACTGGAATCTTCTTGTGAAT+TGG 0.295626 8_1:+29640353 None:intergenic
GTGATATTGGAGGAAGGATA+TGG 0.304020 8_1:-29639763 Msa1188890:CDS
GACAAAATCAGCCCAAAATC+TGG 0.350630 8_1:+29640214 None:intergenic
GGTTCATTTGCAAAAGCATT+TGG 0.357554 8_1:+29640375 None:intergenic
TAAGGATCTGAGGGTAGAAA+TGG 0.386916 8_1:+29640251 None:intergenic
CATAACATTATTTGAAAACC+TGG 0.387180 8_1:+29639273 None:intergenic
CTGGCTTGAGCTTTCTCATA+AGG 0.391510 8_1:+29640233 None:intergenic
TTTCCCTTATGGATAAGAAC+TGG 0.413273 8_1:+29640335 None:intergenic
GATGAATGGCTTAGTATGTT+TGG 0.414883 8_1:-29640473 Msa1188890:CDS
AAAGAGAGATGAGATTGAAT+TGG 0.418834 8_1:-29639735 Msa1188890:CDS
AGTTGATATTATTGGATGAA+TGG 0.418932 8_1:-29640487 Msa1188890:CDS
GTTGGACTGAGAAGACAGTT+TGG 0.424177 8_1:-29639432 Msa1188890:exon
GATTCCAGTTCTTATCCATA+AGG 0.427078 8_1:-29640339 Msa1188890:CDS
TTGAGTATATTGATGAGGTT+TGG 0.428745 8_1:-29640286 Msa1188890:CDS
ATGAATTTGTTGTTAACTAT+AGG 0.433226 8_1:-29639466 Msa1188890:CDS
AATGTGTCACCACCAAAATA+AGG 0.439985 8_1:+29639656 None:intergenic
TGAGATTGAATTGGCAAAGA+AGG 0.443100 8_1:-29639726 Msa1188890:CDS
TGATGAGGTTTGGAAGGATA+AGG 0.450626 8_1:-29640276 Msa1188890:CDS
TATAAAACCAACTATGAAAA+GGG 0.461833 8_1:+29639609 None:intergenic
ATTCCAGTTCTTATCCATAA+GGG 0.462545 8_1:-29640338 Msa1188890:CDS
CTCTGAGAAATTGTACTTGT+TGG 0.463822 8_1:-29639408 Msa1188890:three_prime_UTR
GTATAAAACCAACTATGAAA+AGG 0.463905 8_1:+29639608 None:intergenic
CTATAGGAAGAGGTTTGAGT+TGG 0.471565 8_1:-29639450 Msa1188890:CDS
GCAAAGAAGGAGTTGATTGA+AGG 0.480756 8_1:-29639713 Msa1188890:CDS
GGCAAAGAGATGCAAGCAAA+GGG 0.493054 8_1:-29639528 Msa1188890:CDS
AAGGAATTAGAGAATGTGCT+TGG 0.497037 8_1:-29639686 Msa1188890:CDS
ATCTGTTGCTGATGAGAAAG+AGG 0.514663 8_1:-29639492 Msa1188890:CDS
ATTGGAGGAAGGATATGGGC+TGG 0.515833 8_1:-29639758 Msa1188890:CDS
TGATATTGGAGGAAGGATAT+GGG 0.521396 8_1:-29639762 Msa1188890:CDS
AGGGATAAAGTATGAGTACA+AGG 0.524364 8_1:-29640420 Msa1188890:CDS
AACCACTTAGCAACAAAGAA+AGG 0.531910 8_1:+29639242 None:intergenic
AGCTTTCTCATAAGGATCTG+AGG 0.541397 8_1:+29640241 None:intergenic
TTGTTGTTAACTATAGGAAG+AGG 0.543349 8_1:-29639460 Msa1188890:CDS
ATTATGCAACTTCAAAGTTG+AGG 0.546513 8_1:-29639576 Msa1188890:CDS
GTATATTGATGAGGTTTGGA+AGG 0.548215 8_1:-29640282 Msa1188890:CDS
AAGGATCTGAGGGTAGAAAT+GGG 0.556042 8_1:+29640252 None:intergenic
GTATGTTTGGTATGAGAGCA+AGG 0.566057 8_1:-29640460 Msa1188890:CDS
ATTGCCTTTAACAATGGCAG+AGG 0.575167 8_1:-29640510 Msa1188890:exon
GCTTTCTCATAAGGATCTGA+GGG 0.584199 8_1:+29640242 None:intergenic
GGGCAAAGAGATGCAAGCAA+AGG 0.586185 8_1:-29639529 Msa1188890:CDS
CAAAGAGATGCAAGCAAAGG+GGG 0.596822 8_1:-29639526 Msa1188890:CDS
TATTGTTGAGTATATTGATG+AGG 0.599628 8_1:-29640291 Msa1188890:CDS
ACGCAGGTTGGTGATATTGG+AGG 0.601033 8_1:-29639773 Msa1188890:intron
TATGAGAGCAAGGATAGCAT+TGG 0.605598 8_1:-29640450 Msa1188890:CDS
TGTCACCACCAAAATAAGGT+TGG 0.621870 8_1:+29639660 None:intergenic
GCAAAGAGATGCAAGCAAAG+GGG 0.640147 8_1:-29639527 Msa1188890:CDS
AGGTTGGTGATATTGGAGGA+AGG 0.660611 8_1:-29639769 Msa1188890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATACTCAACAATAATTA+TGG + chr8_1:29639470-29639489 None:intergenic 15.0%
!! TAAAAATATGGTAAAAACTT+TGG + chr8_1:29639603-29639622 None:intergenic 15.0%
!! TAATGAATTAAATAACATGA+TGG - chr8_1:29639736-29639755 Msa1188890:CDS 15.0%
!! ACTTATTTGTATAACTATAT+TGG + chr8_1:29640441-29640460 None:intergenic 15.0%
!! AATATACTCAACAATAATTA+TGG + chr8_1:29639470-29639489 None:intergenic 15.0%
!! TAAAAATATGGTAAAAACTT+TGG + chr8_1:29639603-29639622 None:intergenic 15.0%
!! TAATGAATTAAATAACATGA+TGG - chr8_1:29639736-29639755 Msa1188890:CDS 15.0%
!! ACTTATTTGTATAACTATAT+TGG + chr8_1:29640441-29640460 None:intergenic 15.0%
!! AGAGAAAACAATAAAAAAGA+AGG + chr8_1:29639765-29639784 None:intergenic 20.0%
!!! TTGTTTTCTCTAATATTCAA+TGG - chr8_1:29639774-29639793 Msa1188890:intron 20.0%
!! TATCCATATTATTGAATACT+TGG - chr8_1:29639929-29639948 Msa1188890:intron 20.0%
!! TATAAAACCAACTATGAAAA+GGG + chr8_1:29640159-29640178 None:intergenic 20.0%
!!! ATGAATTTGTTGTTAACTAT+AGG - chr8_1:29640299-29640318 Msa1188890:CDS 20.0%
!! AGAGAAAACAATAAAAAAGA+AGG + chr8_1:29639765-29639784 None:intergenic 20.0%
!!! TTGTTTTCTCTAATATTCAA+TGG - chr8_1:29639774-29639793 Msa1188890:intron 20.0%
!! TATCCATATTATTGAATACT+TGG - chr8_1:29639929-29639948 Msa1188890:intron 20.0%
!! TATAAAACCAACTATGAAAA+GGG + chr8_1:29640159-29640178 None:intergenic 20.0%
!!! ATGAATTTGTTGTTAACTAT+AGG - chr8_1:29640299-29640318 Msa1188890:CDS 20.0%
!! AGTTGATATTATTGGATGAA+TGG - chr8_1:29639278-29639297 Msa1188890:three_prime_UTR 25.0%
! ATAATTATGGACTCAGAAAT+TGG + chr8_1:29639457-29639476 None:intergenic 25.0%
! TATTGTTGAGTATATTGATG+AGG - chr8_1:29639474-29639493 Msa1188890:CDS 25.0%
!! ATTTTTACTTATTTCCTGCT+AGG + chr8_1:29639626-29639645 None:intergenic 25.0%
!!! GTATTGTTTTTGCTTTTGAA+TGG - chr8_1:29639701-29639720 Msa1188890:CDS 25.0%
! TTTCTCTAATATTCAATGGA+TGG - chr8_1:29639778-29639797 Msa1188890:intron 25.0%
! ACACCAAGTATTCAATAATA+TGG + chr8_1:29639935-29639954 None:intergenic 25.0%
! TATTGTGTTAAAAAAAACGC+AGG - chr8_1:29639976-29639995 Msa1188890:intron 25.0%
! GTATAAAACCAACTATGAAA+AGG + chr8_1:29640160-29640179 None:intergenic 25.0%
!! TTCTTTTTCTATTAGTGCTT+TGG - chr8_1:29640414-29640433 Msa1188890:CDS 25.0%
!! TATAGTTATGCAAATTTTCC+AGG - chr8_1:29640474-29640493 Msa1188890:CDS 25.0%
! CATAACATTATTTGAAAACC+TGG + chr8_1:29640495-29640514 None:intergenic 25.0%
!! AGTTGATATTATTGGATGAA+TGG - chr8_1:29639278-29639297 Msa1188890:three_prime_UTR 25.0%
! ATAATTATGGACTCAGAAAT+TGG + chr8_1:29639457-29639476 None:intergenic 25.0%
! TATTGTTGAGTATATTGATG+AGG - chr8_1:29639474-29639493 Msa1188890:CDS 25.0%
!! ATTTTTACTTATTTCCTGCT+AGG + chr8_1:29639626-29639645 None:intergenic 25.0%
!!! GTATTGTTTTTGCTTTTGAA+TGG - chr8_1:29639701-29639720 Msa1188890:CDS 25.0%
! TTTCTCTAATATTCAATGGA+TGG - chr8_1:29639778-29639797 Msa1188890:intron 25.0%
! ACACCAAGTATTCAATAATA+TGG + chr8_1:29639935-29639954 None:intergenic 25.0%
! TATTGTGTTAAAAAAAACGC+AGG - chr8_1:29639976-29639995 Msa1188890:intron 25.0%
! GTATAAAACCAACTATGAAA+AGG + chr8_1:29640160-29640179 None:intergenic 25.0%
!! TTCTTTTTCTATTAGTGCTT+TGG - chr8_1:29640414-29640433 Msa1188890:CDS 25.0%
!! TATAGTTATGCAAATTTTCC+AGG - chr8_1:29640474-29640493 Msa1188890:CDS 25.0%
! CATAACATTATTTGAAAACC+TGG + chr8_1:29640495-29640514 None:intergenic 25.0%
ATTCCAGTTCTTATCCATAA+GGG - chr8_1:29639427-29639446 Msa1188890:exon 30.0%
TTGAGTATATTGATGAGGTT+TGG - chr8_1:29639479-29639498 Msa1188890:CDS 30.0%
!!! ACAAGAAGGTAAGTTTTGTT+AGG - chr8_1:29639575-29639594 Msa1188890:CDS 30.0%
!! TTACCATATTTTTACCTAGC+AGG - chr8_1:29639609-29639628 Msa1188890:CDS 30.0%
TTTCCTGCTAGGTAAAAATA+TGG + chr8_1:29639615-29639634 None:intergenic 30.0%
ATATTCATATCTCACTAGGA+AGG + chr8_1:29639857-29639876 None:intergenic 30.0%
TCCTAGTGAGATATGAATAT+AGG - chr8_1:29639857-29639876 Msa1188890:intron 30.0%
TCCTATATTCATATCTCACT+AGG + chr8_1:29639861-29639880 None:intergenic 30.0%
ACAGTCCTCATATTTCATAA+TGG - chr8_1:29639882-29639901 Msa1188890:intron 30.0%
! TCCTCATATTTCATAATGGA+TGG - chr8_1:29639886-29639905 Msa1188890:intron 30.0%
TCCATCCATTATGAAATATG+AGG + chr8_1:29639890-29639909 None:intergenic 30.0%
AAAGAGAGATGAGATTGAAT+TGG - chr8_1:29640030-29640049 Msa1188890:intron 30.0%
ATTATGCAACTTCAAAGTTG+AGG - chr8_1:29640189-29640208 Msa1188890:intron 30.0%
! TTGTTGTTAACTATAGGAAG+AGG - chr8_1:29640305-29640324 Msa1188890:CDS 30.0%
ATTCCAGTTCTTATCCATAA+GGG - chr8_1:29639427-29639446 Msa1188890:exon 30.0%
TTGAGTATATTGATGAGGTT+TGG - chr8_1:29639479-29639498 Msa1188890:CDS 30.0%
!!! ACAAGAAGGTAAGTTTTGTT+AGG - chr8_1:29639575-29639594 Msa1188890:CDS 30.0%
!! TTACCATATTTTTACCTAGC+AGG - chr8_1:29639609-29639628 Msa1188890:CDS 30.0%
TTTCCTGCTAGGTAAAAATA+TGG + chr8_1:29639615-29639634 None:intergenic 30.0%
ATATTCATATCTCACTAGGA+AGG + chr8_1:29639857-29639876 None:intergenic 30.0%
TCCTAGTGAGATATGAATAT+AGG - chr8_1:29639857-29639876 Msa1188890:intron 30.0%
TCCTATATTCATATCTCACT+AGG + chr8_1:29639861-29639880 None:intergenic 30.0%
ACAGTCCTCATATTTCATAA+TGG - chr8_1:29639882-29639901 Msa1188890:intron 30.0%
! TCCTCATATTTCATAATGGA+TGG - chr8_1:29639886-29639905 Msa1188890:intron 30.0%
TCCATCCATTATGAAATATG+AGG + chr8_1:29639890-29639909 None:intergenic 30.0%
AAAGAGAGATGAGATTGAAT+TGG - chr8_1:29640030-29640049 Msa1188890:intron 30.0%
ATTATGCAACTTCAAAGTTG+AGG - chr8_1:29640189-29640208 Msa1188890:intron 30.0%
! TTGTTGTTAACTATAGGAAG+AGG - chr8_1:29640305-29640324 Msa1188890:CDS 30.0%
TCTGTGATTGCCTTTAACAA+TGG - chr8_1:29639249-29639268 Msa1188890:three_prime_UTR 35.0%
GATGAATGGCTTAGTATGTT+TGG - chr8_1:29639292-29639311 Msa1188890:three_prime_UTR 35.0%
AGGGATAAAGTATGAGTACA+AGG - chr8_1:29639345-29639364 Msa1188890:three_prime_UTR 35.0%
!! GGTTCATTTGCAAAAGCATT+TGG + chr8_1:29639393-29639412 None:intergenic 35.0%
CTGGAATCTTCTTGTGAATT+GGG + chr8_1:29639414-29639433 None:intergenic 35.0%
ACTGGAATCTTCTTGTGAAT+TGG + chr8_1:29639415-29639434 None:intergenic 35.0%
GATTCCAGTTCTTATCCATA+AGG - chr8_1:29639426-29639445 Msa1188890:exon 35.0%
TTTCCCTTATGGATAAGAAC+TGG + chr8_1:29639433-29639452 None:intergenic 35.0%
!!! CAGAAATTGGTTTTCCCTTA+TGG + chr8_1:29639444-29639463 None:intergenic 35.0%
GTATATTGATGAGGTTTGGA+AGG - chr8_1:29639483-29639502 Msa1188890:CDS 35.0%
GTGTTAAAAAAAACGCAGGT+TGG - chr8_1:29639980-29639999 Msa1188890:intron 35.0%
TGATATTGGAGGAAGGATAT+GGG - chr8_1:29640003-29640022 Msa1188890:intron 35.0%
TGAGATTGAATTGGCAAAGA+AGG - chr8_1:29640039-29640058 Msa1188890:intron 35.0%
AAGGAATTAGAGAATGTGCT+TGG - chr8_1:29640079-29640098 Msa1188890:intron 35.0%
AATGTGTCACCACCAAAATA+AGG + chr8_1:29640112-29640131 None:intergenic 35.0%
!!! TATTTTGGTGGTGACACATT+TGG - chr8_1:29640112-29640131 Msa1188890:intron 35.0%
!!! ATTTTGGTGGTGACACATTT+GGG - chr8_1:29640113-29640132 Msa1188890:intron 35.0%
! CTTTGATCCCTTTTCATAGT+TGG - chr8_1:29640149-29640168 Msa1188890:intron 35.0%
AGTGTGAAAAACTGATTGCT+TGG - chr8_1:29640215-29640234 Msa1188890:CDS 35.0%
GTGTGAAAAACTGATTGCTT+GGG - chr8_1:29640216-29640235 Msa1188890:CDS 35.0%
! CTCTGAGAAATTGTACTTGT+TGG - chr8_1:29640357-29640376 Msa1188890:CDS 35.0%
TCTGTGATTGCCTTTAACAA+TGG - chr8_1:29639249-29639268 Msa1188890:three_prime_UTR 35.0%
GATGAATGGCTTAGTATGTT+TGG - chr8_1:29639292-29639311 Msa1188890:three_prime_UTR 35.0%
AGGGATAAAGTATGAGTACA+AGG - chr8_1:29639345-29639364 Msa1188890:three_prime_UTR 35.0%
!! GGTTCATTTGCAAAAGCATT+TGG + chr8_1:29639393-29639412 None:intergenic 35.0%
CTGGAATCTTCTTGTGAATT+GGG + chr8_1:29639414-29639433 None:intergenic 35.0%
ACTGGAATCTTCTTGTGAAT+TGG + chr8_1:29639415-29639434 None:intergenic 35.0%
GATTCCAGTTCTTATCCATA+AGG - chr8_1:29639426-29639445 Msa1188890:exon 35.0%
TTTCCCTTATGGATAAGAAC+TGG + chr8_1:29639433-29639452 None:intergenic 35.0%
!!! CAGAAATTGGTTTTCCCTTA+TGG + chr8_1:29639444-29639463 None:intergenic 35.0%
GTATATTGATGAGGTTTGGA+AGG - chr8_1:29639483-29639502 Msa1188890:CDS 35.0%
GTGTTAAAAAAAACGCAGGT+TGG - chr8_1:29639980-29639999 Msa1188890:intron 35.0%
TGATATTGGAGGAAGGATAT+GGG - chr8_1:29640003-29640022 Msa1188890:intron 35.0%
TGAGATTGAATTGGCAAAGA+AGG - chr8_1:29640039-29640058 Msa1188890:intron 35.0%
AAGGAATTAGAGAATGTGCT+TGG - chr8_1:29640079-29640098 Msa1188890:intron 35.0%
AATGTGTCACCACCAAAATA+AGG + chr8_1:29640112-29640131 None:intergenic 35.0%
!!! TATTTTGGTGGTGACACATT+TGG - chr8_1:29640112-29640131 Msa1188890:intron 35.0%
!!! ATTTTGGTGGTGACACATTT+GGG - chr8_1:29640113-29640132 Msa1188890:intron 35.0%
! CTTTGATCCCTTTTCATAGT+TGG - chr8_1:29640149-29640168 Msa1188890:intron 35.0%
AGTGTGAAAAACTGATTGCT+TGG - chr8_1:29640215-29640234 Msa1188890:CDS 35.0%
GTGTGAAAAACTGATTGCTT+GGG - chr8_1:29640216-29640235 Msa1188890:CDS 35.0%
! CTCTGAGAAATTGTACTTGT+TGG - chr8_1:29640357-29640376 Msa1188890:CDS 35.0%
ATTGCCTTTAACAATGGCAG+AGG - chr8_1:29639255-29639274 Msa1188890:three_prime_UTR 40.0%
AACTCCTCTGCCATTGTTAA+AGG + chr8_1:29639262-29639281 None:intergenic 40.0%
!! GGCAGAGGAGTTGATATTAT+TGG - chr8_1:29639270-29639289 Msa1188890:three_prime_UTR 40.0%
GTATGTTTGGTATGAGAGCA+AGG - chr8_1:29639305-29639324 Msa1188890:three_prime_UTR 40.0%
TATGAGAGCAAGGATAGCAT+TGG - chr8_1:29639315-29639334 Msa1188890:three_prime_UTR 40.0%
!! AGGATAGCATTGGCTGAAAA+AGG - chr8_1:29639325-29639344 Msa1188890:three_prime_UTR 40.0%
!! GGATAGCATTGGCTGAAAAA+GGG - chr8_1:29639326-29639345 Msa1188890:three_prime_UTR 40.0%
TGATGAGGTTTGGAAGGATA+AGG - chr8_1:29639489-29639508 Msa1188890:CDS 40.0%
AAGGATCTGAGGGTAGAAAT+GGG + chr8_1:29639516-29639535 None:intergenic 40.0%
TAAGGATCTGAGGGTAGAAA+TGG + chr8_1:29639517-29639536 None:intergenic 40.0%
GCTTTCTCATAAGGATCTGA+GGG + chr8_1:29639526-29639545 None:intergenic 40.0%
AGCTTTCTCATAAGGATCTG+AGG + chr8_1:29639527-29639546 None:intergenic 40.0%
! AGAAAGCTCAAGCCAGATTT+TGG - chr8_1:29639539-29639558 Msa1188890:CDS 40.0%
! GAAAGCTCAAGCCAGATTTT+GGG - chr8_1:29639540-29639559 Msa1188890:CDS 40.0%
GACAAAATCAGCCCAAAATC+TGG + chr8_1:29639554-29639573 None:intergenic 40.0%
!! GGCTGATTTTGTCAACAAGA+AGG - chr8_1:29639561-29639580 Msa1188890:CDS 40.0%
CATATCTCACTAGGAAGGAA+AGG + chr8_1:29639852-29639871 None:intergenic 40.0%
!! AAAACGCAGGTTGGTGATAT+TGG - chr8_1:29639989-29640008 Msa1188890:intron 40.0%
GTGATATTGGAGGAAGGATA+TGG - chr8_1:29640002-29640021 Msa1188890:intron 40.0%
! GCAAAGAAGGAGTTGATTGA+AGG - chr8_1:29640052-29640071 Msa1188890:intron 40.0%
! GGAGTTGATTGAAGGCTTAA+AGG - chr8_1:29640060-29640079 Msa1188890:intron 40.0%
!! CTTGGAGACCAACCTTATTT+TGG - chr8_1:29640097-29640116 Msa1188890:intron 40.0%
TGTCACCACCAAAATAAGGT+TGG + chr8_1:29640108-29640127 None:intergenic 40.0%
ATCTGTTGCTGATGAGAAAG+AGG - chr8_1:29640273-29640292 Msa1188890:CDS 40.0%
CTATAGGAAGAGGTTTGAGT+TGG - chr8_1:29640315-29640334 Msa1188890:CDS 40.0%
ATTGCCTTTAACAATGGCAG+AGG - chr8_1:29639255-29639274 Msa1188890:three_prime_UTR 40.0%
AACTCCTCTGCCATTGTTAA+AGG + chr8_1:29639262-29639281 None:intergenic 40.0%
!! GGCAGAGGAGTTGATATTAT+TGG - chr8_1:29639270-29639289 Msa1188890:three_prime_UTR 40.0%
GTATGTTTGGTATGAGAGCA+AGG - chr8_1:29639305-29639324 Msa1188890:three_prime_UTR 40.0%
TATGAGAGCAAGGATAGCAT+TGG - chr8_1:29639315-29639334 Msa1188890:three_prime_UTR 40.0%
!! AGGATAGCATTGGCTGAAAA+AGG - chr8_1:29639325-29639344 Msa1188890:three_prime_UTR 40.0%
!! GGATAGCATTGGCTGAAAAA+GGG - chr8_1:29639326-29639345 Msa1188890:three_prime_UTR 40.0%
TGATGAGGTTTGGAAGGATA+AGG - chr8_1:29639489-29639508 Msa1188890:CDS 40.0%
AAGGATCTGAGGGTAGAAAT+GGG + chr8_1:29639516-29639535 None:intergenic 40.0%
TAAGGATCTGAGGGTAGAAA+TGG + chr8_1:29639517-29639536 None:intergenic 40.0%
GCTTTCTCATAAGGATCTGA+GGG + chr8_1:29639526-29639545 None:intergenic 40.0%
AGCTTTCTCATAAGGATCTG+AGG + chr8_1:29639527-29639546 None:intergenic 40.0%
! AGAAAGCTCAAGCCAGATTT+TGG - chr8_1:29639539-29639558 Msa1188890:CDS 40.0%
! GAAAGCTCAAGCCAGATTTT+GGG - chr8_1:29639540-29639559 Msa1188890:CDS 40.0%
GACAAAATCAGCCCAAAATC+TGG + chr8_1:29639554-29639573 None:intergenic 40.0%
!! GGCTGATTTTGTCAACAAGA+AGG - chr8_1:29639561-29639580 Msa1188890:CDS 40.0%
CATATCTCACTAGGAAGGAA+AGG + chr8_1:29639852-29639871 None:intergenic 40.0%
!! AAAACGCAGGTTGGTGATAT+TGG - chr8_1:29639989-29640008 Msa1188890:intron 40.0%
GTGATATTGGAGGAAGGATA+TGG - chr8_1:29640002-29640021 Msa1188890:intron 40.0%
! GCAAAGAAGGAGTTGATTGA+AGG - chr8_1:29640052-29640071 Msa1188890:intron 40.0%
! GGAGTTGATTGAAGGCTTAA+AGG - chr8_1:29640060-29640079 Msa1188890:intron 40.0%
!! CTTGGAGACCAACCTTATTT+TGG - chr8_1:29640097-29640116 Msa1188890:intron 40.0%
TGTCACCACCAAAATAAGGT+TGG + chr8_1:29640108-29640127 None:intergenic 40.0%
ATCTGTTGCTGATGAGAAAG+AGG - chr8_1:29640273-29640292 Msa1188890:CDS 40.0%
CTATAGGAAGAGGTTTGAGT+TGG - chr8_1:29640315-29640334 Msa1188890:CDS 40.0%
! CTGGCTTGAGCTTTCTCATA+AGG + chr8_1:29639535-29639554 None:intergenic 45.0%
!! AGGTTGGTGATATTGGAGGA+AGG - chr8_1:29639996-29640015 Msa1188890:intron 45.0%
!!! GGAGACCAACCTTATTTTGG+TGG - chr8_1:29640100-29640119 Msa1188890:intron 45.0%
GGCAAAGAGATGCAAGCAAA+GGG - chr8_1:29640237-29640256 Msa1188890:CDS 45.0%
GCAAAGAGATGCAAGCAAAG+GGG - chr8_1:29640238-29640257 Msa1188890:CDS 45.0%
CAAAGAGATGCAAGCAAAGG+GGG - chr8_1:29640239-29640258 Msa1188890:CDS 45.0%
GTTGGACTGAGAAGACAGTT+TGG - chr8_1:29640333-29640352 Msa1188890:CDS 45.0%
! CTGGCTTGAGCTTTCTCATA+AGG + chr8_1:29639535-29639554 None:intergenic 45.0%
!! AGGTTGGTGATATTGGAGGA+AGG - chr8_1:29639996-29640015 Msa1188890:intron 45.0%
!!! GGAGACCAACCTTATTTTGG+TGG - chr8_1:29640100-29640119 Msa1188890:intron 45.0%
GGCAAAGAGATGCAAGCAAA+GGG - chr8_1:29640237-29640256 Msa1188890:CDS 45.0%
GCAAAGAGATGCAAGCAAAG+GGG - chr8_1:29640238-29640257 Msa1188890:CDS 45.0%
CAAAGAGATGCAAGCAAAGG+GGG - chr8_1:29640239-29640258 Msa1188890:CDS 45.0%
GTTGGACTGAGAAGACAGTT+TGG - chr8_1:29640333-29640352 Msa1188890:CDS 45.0%
!! AATAAAATGAATAAAAAATA+TGG + chr8_1:29639960-29639979 None:intergenic 5.0%
!! AATAAAATGAATAAAAAATA+TGG + chr8_1:29639960-29639979 None:intergenic 5.0%
!! ACGCAGGTTGGTGATATTGG+AGG - chr8_1:29639992-29640011 Msa1188890:intron 50.0%
ATTGGAGGAAGGATATGGGC+TGG - chr8_1:29640007-29640026 Msa1188890:intron 50.0%
GGGCAAAGAGATGCAAGCAA+AGG - chr8_1:29640236-29640255 Msa1188890:CDS 50.0%
!! ACGCAGGTTGGTGATATTGG+AGG - chr8_1:29639992-29640011 Msa1188890:intron 50.0%
ATTGGAGGAAGGATATGGGC+TGG - chr8_1:29640007-29640026 Msa1188890:intron 50.0%
GGGCAAAGAGATGCAAGCAA+AGG - chr8_1:29640236-29640255 Msa1188890:CDS 50.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 29639248 29640539 29639248 ID=Msa1188890;Name=Msa1188890
chr8_1 mRNA 29639248 29640539 29639248 ID=Msa1188890-mRNA-1;Parent=Msa1188890;Name=Msa1188890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=20|1|1|1|1|1|2|197|219
chr8_1 exon 29639248 29639789 29639248 ID=Msa1188890-mRNA-1:exon:10427;Parent=Msa1188890-mRNA-1
chr8_1 exon 29640205 29640539 29640205 ID=Msa1188890-mRNA-1:exon:10426;Parent=Msa1188890-mRNA-1
chr8_1 five_prime_UTR 29640520 29640539 29640520 ID=Msa1188890-mRNA-1:five_prime_utr;Parent=Msa1188890-mRNA-1
chr8_1 CDS 29640205 29640519 29640205 ID=Msa1188890-mRNA-1:cds;Parent=Msa1188890-mRNA-1
chr8_1 CDS 29639445 29639789 29639445 ID=Msa1188890-mRNA-1:cds;Parent=Msa1188890-mRNA-1
chr8_1 three_prime_UTR 29639248 29639444 29639248 ID=Msa1188890-mRNA-1:three_prime_utr;Parent=Msa1188890-mRNA-1
Gene Sequence

>Msa1188890

ATGGCAGAGGAGTTGATATTATTGGATGAATGGCTTAGTATGTTTGGTATGAGAGCAAGGATAGCATTGGCTGAAAAAGGGATAAAGTATGAGTACAAGGAAGAAGATCTTGAGAACAAGAGCCAAATGCTTTTGCAAATGAACCCAATTCACAAGAAGATTCCAGTTCTTATCCATAAGGGAAAACCAATTTCTGAGTCCATAATTATTGTTGAGTATATTGATGAGGTTTGGAAGGATAAGGTCCCATTTCTACCCTCAGATCCTTATGAGAAAGCTCAAGCCAGATTTTGGGCTGATTTTGTCAACAAGAAGGTTGGTGATATTGGAGGAAGGATATGGGCTGGAAAGAGAGATGAGATTGAATTGGCAAAGAAGGAGTTGATTGAAGGCTTAAAGGAATTAGAGAATGTGCTTGGAGACCAACCTTATTTTGGTGGTGACACATTTGGGTTTGTTGACATTGCTTTGATCCCTTTTCATAGTTGGTTTTATACTTATGAGAAATTATGCAACTTCAAAGTTGAGGAAGAGTGTGAAAAACTGATTGCTTGGGCAAAGAGATGCAAGCAAAGGGGGAGTGTTTCTAAATCTGTTGCTGATGAGAAAGAGGTGTATGAATTTGTTGTTAACTATAGGAAGAGGTTTGAGTTGGACTGA

Protein sequence

>Msa1188890

MAEELILLDEWLSMFGMRARIALAEKGIKYEYKEEDLENKSQMLLQMNPIHKKIPVLIHKGKPISESIIIVEYIDEVWKDKVPFLPSDPYEKAQARFWADFVNKKVGDIGGRIWAGKRDEIELAKKELIEGLKELENVLGDQPYFGGDTFGFVDIALIPFHSWFYTYEKLCNFKVEEECEKLIAWAKRCKQRGSVSKSVADEKEVYEFVVNYRKRFELD*