Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188890 | XP_039684350.1 | 95.890 | 219 | 9 | 0 | 1 | 219 | 1 | 219 | 3.39e-151 | 429 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188890 | sp|P49332|GSTXC_TOBAC | 68.349 | 218 | 68 | 1 | 3 | 219 | 4 | 221 | 6.78e-104 | 301 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188890 | B7FGX6 | 95.890 | 219 | 9 | 0 | 1 | 219 | 1 | 219 | 1.62e-151 | 429 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0050730 | Msa1188890 | 0.812551 | 4.004361e-51 | -8.615850e-47 |
Msa0050760 | Msa1188890 | 0.814450 | 1.531065e-51 | -8.615850e-47 |
Msa0085250 | Msa1188890 | 0.801532 | 8.613651e-49 | -8.615850e-47 |
Msa0102750 | Msa1188890 | 0.820573 | 6.386750e-53 | -8.615850e-47 |
Msa0105420 | Msa1188890 | 0.837652 | 4.581793e-57 | -8.615850e-47 |
Msa0670980 | Msa1188890 | 0.809290 | 2.035456e-50 | -8.615850e-47 |
Msa0140910 | Msa1188890 | 0.808558 | 2.919236e-50 | -8.615850e-47 |
Msa0217400 | Msa1188890 | 0.806586 | 7.654133e-50 | -8.615850e-47 |
Msa0437710 | Msa1188890 | 0.805308 | 1.421338e-49 | -8.615850e-47 |
Msa1009000 | Msa1188890 | 0.810306 | 1.230998e-50 | -8.615850e-47 |
Msa1069300 | Msa1188890 | 0.806761 | 7.030770e-50 | -8.615850e-47 |
Msa1099030 | Msa1188890 | 0.802622 | 5.141821e-49 | -8.615850e-47 |
Msa0296560 | Msa1188890 | 0.810310 | 1.228454e-50 | -8.615850e-47 |
Msa0335040 | Msa1188890 | 0.821173 | 4.647263e-53 | -8.615850e-47 |
Msa1188890 | Msa1243010 | 0.849943 | 2.337332e-60 | -8.615850e-47 |
Msa1188890 | Msa1284490 | 0.808524 | 2.968503e-50 | -8.615850e-47 |
Msa1188890 | Msa1323060 | 0.803721 | 3.044904e-49 | -8.615850e-47 |
Msa1188890 | Msa1363890 | 0.807310 | 5.381198e-50 | -8.615850e-47 |
Msa1188890 | Msa1408790 | 0.805841 | 1.098539e-49 | -8.615850e-47 |
Msa1188890 | Msa1436040 | 0.801588 | 8.389689e-49 | -8.615850e-47 |
Msa1188890 | Msa1440600 | 0.815967 | 7.046568e-52 | -8.615850e-47 |
Msa0509970 | Msa1188890 | 0.806078 | 9.797349e-50 | -8.615850e-47 |
Msa0896210 | Msa1188890 | 0.814811 | 1.273535e-51 | -8.615850e-47 |
Msa0896220 | Msa1188890 | 0.805900 | 1.067509e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188890 | MtrunA17_Chr8g0357211 | 95.890 | 219 | 9 | 0 | 1 | 219 | 1 | 219 | 3.12e-155 | 429 |
Msa1188890 | MtrunA17_Chr8g0357241 | 95.434 | 219 | 10 | 0 | 1 | 219 | 1 | 219 | 4.48e-155 | 428 |
Msa1188890 | MtrunA17_Chr2g0312681 | 64.840 | 219 | 77 | 0 | 1 | 219 | 1 | 219 | 3.16e-103 | 297 |
Msa1188890 | MtrunA17_Chr2g0312771 | 64.384 | 219 | 78 | 0 | 1 | 219 | 1 | 219 | 1.58e-102 | 295 |
Msa1188890 | MtrunA17_Chr2g0312751 | 64.840 | 219 | 77 | 0 | 1 | 219 | 1 | 219 | 3.40e-102 | 295 |
Msa1188890 | MtrunA17_Chr2g0312691 | 64.840 | 219 | 77 | 0 | 1 | 219 | 1 | 219 | 3.47e-102 | 295 |
Msa1188890 | MtrunA17_Chr2g0312781 | 63.084 | 214 | 79 | 0 | 1 | 214 | 18 | 231 | 1.63e-97 | 283 |
Msa1188890 | MtrunA17_Chr2g0312731 | 58.447 | 219 | 91 | 0 | 1 | 219 | 1 | 219 | 2.31e-94 | 275 |
Msa1188890 | MtrunA17_Chr2g0312711 | 61.644 | 219 | 83 | 1 | 1 | 219 | 1 | 218 | 4.68e-93 | 271 |
Msa1188890 | MtrunA17_Chr2g0312791 | 60.550 | 218 | 84 | 2 | 1 | 216 | 1 | 218 | 4.69e-91 | 266 |
Msa1188890 | MtrunA17_Chr2g0312811 | 59.722 | 216 | 85 | 1 | 1 | 214 | 1 | 216 | 4.00e-90 | 264 |
Msa1188890 | MtrunA17_Chr3g0107731 | 54.884 | 215 | 97 | 0 | 5 | 219 | 10 | 224 | 3.98e-89 | 261 |
Msa1188890 | MtrunA17_Chr3g0107741 | 54.378 | 217 | 99 | 0 | 3 | 219 | 8 | 224 | 1.53e-88 | 260 |
Msa1188890 | MtrunA17_Chr2g0312721 | 57.416 | 209 | 89 | 0 | 1 | 209 | 1 | 209 | 4.90e-83 | 246 |
Msa1188890 | MtrunA17_Chr4g0069471 | 63.934 | 183 | 63 | 2 | 1 | 182 | 22 | 202 | 4.79e-81 | 240 |
Msa1188890 | MtrunA17_Chr5g0433801 | 51.869 | 214 | 101 | 2 | 2 | 214 | 4 | 216 | 5.60e-73 | 221 |
Msa1188890 | MtrunA17_Chr4g0008781 | 39.234 | 209 | 122 | 4 | 3 | 208 | 7 | 213 | 8.47e-45 | 149 |
Msa1188890 | MtrunA17_Chr7g0240681 | 39.545 | 220 | 126 | 5 | 3 | 217 | 6 | 223 | 1.17e-44 | 148 |
Msa1188890 | MtrunA17_Chr7g0240641 | 39.450 | 218 | 124 | 5 | 3 | 217 | 6 | 218 | 3.49e-44 | 147 |
Msa1188890 | MtrunA17_Chr7g0240691 | 42.381 | 210 | 115 | 4 | 3 | 208 | 36 | 243 | 5.07e-44 | 148 |
Msa1188890 | MtrunA17_Chr7g0240631 | 38.073 | 218 | 127 | 5 | 3 | 217 | 6 | 218 | 7.93e-44 | 146 |
Msa1188890 | MtrunA17_Chr8g0379581 | 36.239 | 218 | 136 | 2 | 2 | 217 | 3 | 219 | 1.24e-43 | 145 |
Msa1188890 | MtrunA17_Chr3g0132581 | 47.159 | 176 | 91 | 2 | 1 | 175 | 1 | 175 | 1.39e-43 | 145 |
Msa1188890 | MtrunA17_Chr4g0029341 | 39.906 | 213 | 123 | 3 | 1 | 209 | 1 | 212 | 3.33e-43 | 144 |
Msa1188890 | MtrunA17_Chr1g0196661 | 40.394 | 203 | 116 | 3 | 11 | 209 | 10 | 211 | 9.39e-43 | 144 |
Msa1188890 | MtrunA17_Chr7g0240611 | 45.699 | 186 | 96 | 5 | 3 | 187 | 6 | 187 | 2.08e-42 | 142 |
Msa1188890 | MtrunA17_Chr5g0415411 | 41.176 | 221 | 115 | 7 | 2 | 210 | 3 | 220 | 9.41e-42 | 141 |
Msa1188890 | MtrunA17_Chr4g0008791 | 40.704 | 199 | 113 | 4 | 4 | 199 | 7 | 203 | 1.77e-41 | 140 |
Msa1188890 | MtrunA17_Chr5g0417011 | 35.610 | 205 | 125 | 2 | 2 | 199 | 5 | 209 | 1.79e-41 | 140 |
Msa1188890 | MtrunA17_Chr7g0240531 | 40.670 | 209 | 114 | 6 | 13 | 217 | 16 | 218 | 1.72e-40 | 138 |
Msa1188890 | MtrunA17_Chr7g0240541 | 38.942 | 208 | 119 | 5 | 13 | 217 | 16 | 218 | 4.04e-40 | 137 |
Msa1188890 | MtrunA17_Chr7g0240671 | 48.428 | 159 | 79 | 3 | 1 | 158 | 1 | 157 | 1.05e-39 | 135 |
Msa1188890 | MtrunA17_Chr8g0379561 | 40.000 | 185 | 108 | 2 | 3 | 185 | 5 | 188 | 1.14e-39 | 135 |
Msa1188890 | MtrunA17_Chr6g0483141 | 39.320 | 206 | 115 | 5 | 18 | 216 | 17 | 219 | 2.00e-38 | 132 |
Msa1188890 | MtrunA17_Chr7g0240561 | 37.799 | 209 | 120 | 6 | 13 | 217 | 16 | 218 | 2.29e-38 | 132 |
Msa1188890 | MtrunA17_Chr7g0240511 | 39.904 | 208 | 112 | 7 | 13 | 217 | 16 | 213 | 3.18e-38 | 132 |
Msa1188890 | MtrunA17_Chr1g0196721 | 41.089 | 202 | 114 | 3 | 11 | 208 | 9 | 209 | 1.00e-37 | 130 |
Msa1188890 | MtrunA17_Chr8g0363751 | 40.909 | 198 | 108 | 5 | 7 | 195 | 8 | 205 | 1.21e-37 | 130 |
Msa1188890 | MtrunA17_Chr7g0240551 | 37.500 | 208 | 122 | 5 | 13 | 217 | 16 | 218 | 2.23e-37 | 130 |
Msa1188890 | MtrunA17_Chr1g0212301 | 39.604 | 202 | 112 | 4 | 7 | 201 | 6 | 204 | 2.76e-37 | 129 |
Msa1188890 | MtrunA17_Chr1g0196771 | 36.530 | 219 | 131 | 5 | 3 | 216 | 2 | 217 | 5.33e-37 | 129 |
Msa1188890 | MtrunA17_Chr7g0240651 | 47.771 | 157 | 79 | 3 | 3 | 158 | 6 | 160 | 1.10e-36 | 128 |
Msa1188890 | MtrunA17_Chr1g0196691 | 38.140 | 215 | 119 | 5 | 4 | 209 | 28 | 237 | 1.80e-36 | 128 |
Msa1188890 | MtrunA17_Chr7g0240581 | 41.799 | 189 | 103 | 5 | 3 | 187 | 6 | 191 | 4.28e-36 | 126 |
Msa1188890 | MtrunA17_Chr1g0196711 | 40.099 | 202 | 116 | 4 | 11 | 208 | 10 | 210 | 9.51e-36 | 125 |
Msa1188890 | MtrunA17_Chr7g0240661 | 48.387 | 155 | 77 | 3 | 3 | 156 | 6 | 158 | 8.51e-35 | 123 |
Msa1188890 | MtrunA17_Chr7g0240521 | 38.298 | 188 | 111 | 4 | 3 | 187 | 13 | 198 | 3.93e-33 | 119 |
Msa1188890 | MtrunA17_Chr8g0391631 | 41.447 | 152 | 82 | 4 | 7 | 151 | 24 | 175 | 2.15e-29 | 107 |
Msa1188890 | MtrunA17_Chr2g0313561 | 63.889 | 72 | 26 | 0 | 47 | 118 | 1 | 72 | 8.86e-28 | 100 |
Msa1188890 | MtrunA17_Chr5g0415421 | 45.205 | 73 | 38 | 2 | 28 | 98 | 11 | 83 | 1.94e-11 | 59.3 |
Msa1188890 | MtrunA17_Chr7g0263221 | 27.700 | 213 | 136 | 8 | 10 | 216 | 32 | 232 | 3.88e-11 | 60.8 |
Msa1188890 | MtrunA17_Chr4g0076691 | 28.070 | 171 | 106 | 5 | 3 | 159 | 14 | 181 | 4.69e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1188890 | AT1G78380.1 | 64.815 | 216 | 76 | 0 | 1 | 216 | 1 | 216 | 3.82e-100 | 290 |
Msa1188890 | AT1G78370.1 | 60.465 | 215 | 85 | 0 | 1 | 215 | 1 | 215 | 7.15e-96 | 279 |
Msa1188890 | AT1G17170.1 | 61.644 | 219 | 83 | 1 | 1 | 219 | 1 | 218 | 8.62e-96 | 278 |
Msa1188890 | AT1G17180.1 | 59.817 | 219 | 88 | 0 | 1 | 219 | 1 | 219 | 4.25e-94 | 275 |
Msa1188890 | AT1G78340.1 | 61.215 | 214 | 83 | 0 | 1 | 214 | 1 | 214 | 8.63e-94 | 273 |
Msa1188890 | AT1G78360.1 | 59.545 | 220 | 88 | 1 | 1 | 219 | 1 | 220 | 7.10e-92 | 269 |
Msa1188890 | AT1G78320.1 | 59.346 | 214 | 87 | 0 | 1 | 214 | 1 | 214 | 6.78e-88 | 259 |
Msa1188890 | AT1G17190.1 | 55.607 | 214 | 95 | 0 | 3 | 216 | 4 | 217 | 7.57e-85 | 251 |
Msa1188890 | AT1G53680.1 | 52.995 | 217 | 100 | 2 | 5 | 219 | 8 | 224 | 1.16e-82 | 246 |
Msa1188890 | AT3G43800.1 | 51.818 | 220 | 102 | 3 | 3 | 218 | 4 | 223 | 1.18e-71 | 218 |
Msa1188890 | AT1G78320.2 | 50.467 | 214 | 79 | 1 | 1 | 214 | 1 | 187 | 1.85e-67 | 206 |
Msa1188890 | AT2G29420.1 | 40.541 | 222 | 118 | 6 | 2 | 217 | 7 | 220 | 7.76e-48 | 157 |
Msa1188890 | AT3G09270.1 | 47.594 | 187 | 95 | 2 | 3 | 186 | 5 | 191 | 5.56e-47 | 155 |
Msa1188890 | AT1G10370.1 | 39.352 | 216 | 123 | 4 | 2 | 209 | 3 | 218 | 1.20e-44 | 149 |
Msa1188890 | AT2G29460.1 | 47.205 | 161 | 81 | 2 | 3 | 160 | 6 | 165 | 8.55e-43 | 144 |
Msa1188890 | AT1G74590.1 | 34.545 | 220 | 132 | 4 | 5 | 215 | 8 | 224 | 1.35e-42 | 144 |
Msa1188890 | AT2G29480.1 | 45.963 | 161 | 83 | 2 | 3 | 160 | 6 | 165 | 2.61e-42 | 143 |
Msa1188890 | AT1G10360.1 | 39.013 | 223 | 125 | 5 | 2 | 216 | 3 | 222 | 4.89e-42 | 142 |
Msa1188890 | AT2G29490.1 | 46.584 | 161 | 82 | 2 | 3 | 160 | 6 | 165 | 1.02e-41 | 141 |
Msa1188890 | AT2G29450.1 | 49.080 | 163 | 76 | 4 | 3 | 160 | 5 | 165 | 4.88e-41 | 139 |
Msa1188890 | AT2G29440.1 | 47.879 | 165 | 74 | 4 | 3 | 160 | 5 | 164 | 6.15e-41 | 139 |
Msa1188890 | AT1G59700.1 | 41.014 | 217 | 117 | 6 | 3 | 209 | 5 | 220 | 7.06e-41 | 139 |
Msa1188890 | AT2G29470.1 | 38.426 | 216 | 126 | 5 | 7 | 217 | 10 | 223 | 8.06e-41 | 139 |
Msa1188890 | AT1G59670.1 | 39.640 | 222 | 125 | 5 | 3 | 215 | 5 | 226 | 7.18e-39 | 134 |
Msa1188890 | AT1G27130.1 | 37.441 | 211 | 123 | 4 | 7 | 208 | 9 | 219 | 1.77e-38 | 133 |
Msa1188890 | AT5G62480.1 | 33.182 | 220 | 137 | 2 | 5 | 214 | 9 | 228 | 2.22e-38 | 133 |
Msa1188890 | AT1G27140.1 | 39.512 | 205 | 114 | 4 | 15 | 209 | 17 | 221 | 3.58e-37 | 130 |
Msa1188890 | AT1G69930.1 | 35.885 | 209 | 127 | 3 | 7 | 208 | 15 | 223 | 6.58e-36 | 127 |
Msa1188890 | AT1G69920.1 | 35.426 | 223 | 128 | 6 | 7 | 218 | 37 | 254 | 5.46e-34 | 122 |
Msa1188890 | AT5G62480.3 | 29.050 | 179 | 92 | 2 | 5 | 175 | 9 | 160 | 7.63e-21 | 87.0 |
Msa1188890 | AT5G62480.2 | 29.050 | 179 | 93 | 2 | 5 | 175 | 9 | 161 | 1.13e-20 | 86.7 |
Find 58 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAAGCTCAAGCCAGATTT+TGG | 0.160142 | 8_1:-29640226 | Msa1188890:CDS |
AACTCCTCTGCCATTGTTAA+AGG | 0.207479 | 8_1:+29640506 | None:intergenic |
AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | 8_1:-29640440 | Msa1188890:CDS |
ATAATTATGGACTCAGAAAT+TGG | 0.235033 | 8_1:+29640311 | None:intergenic |
ACTTATTTGTATAACTATAT+TGG | 0.246318 | 8_1:+29639327 | None:intergenic |
CTTGGAGACCAACCTTATTT+TGG | 0.247910 | 8_1:-29639668 | Msa1188890:CDS |
GGCAGAGGAGTTGATATTAT+TGG | 0.258303 | 8_1:-29640495 | Msa1188890:CDS |
GGAGTTGATTGAAGGCTTAA+AGG | 0.261757 | 8_1:-29639705 | Msa1188890:CDS |
AATATACTCAACAATAATTA+TGG | 0.276052 | 8_1:+29640298 | None:intergenic |
AAAACGCAGGTTGGTGATAT+TGG | 0.283609 | 8_1:-29639776 | Msa1188890:intron |
CTGGAATCTTCTTGTGAATT+GGG | 0.294128 | 8_1:+29640354 | None:intergenic |
ACTGGAATCTTCTTGTGAAT+TGG | 0.295626 | 8_1:+29640353 | None:intergenic |
GTGATATTGGAGGAAGGATA+TGG | 0.304020 | 8_1:-29639763 | Msa1188890:CDS |
GACAAAATCAGCCCAAAATC+TGG | 0.350630 | 8_1:+29640214 | None:intergenic |
GGTTCATTTGCAAAAGCATT+TGG | 0.357554 | 8_1:+29640375 | None:intergenic |
TAAGGATCTGAGGGTAGAAA+TGG | 0.386916 | 8_1:+29640251 | None:intergenic |
CATAACATTATTTGAAAACC+TGG | 0.387180 | 8_1:+29639273 | None:intergenic |
CTGGCTTGAGCTTTCTCATA+AGG | 0.391510 | 8_1:+29640233 | None:intergenic |
TTTCCCTTATGGATAAGAAC+TGG | 0.413273 | 8_1:+29640335 | None:intergenic |
GATGAATGGCTTAGTATGTT+TGG | 0.414883 | 8_1:-29640473 | Msa1188890:CDS |
AAAGAGAGATGAGATTGAAT+TGG | 0.418834 | 8_1:-29639735 | Msa1188890:CDS |
AGTTGATATTATTGGATGAA+TGG | 0.418932 | 8_1:-29640487 | Msa1188890:CDS |
GTTGGACTGAGAAGACAGTT+TGG | 0.424177 | 8_1:-29639432 | Msa1188890:exon |
GATTCCAGTTCTTATCCATA+AGG | 0.427078 | 8_1:-29640339 | Msa1188890:CDS |
TTGAGTATATTGATGAGGTT+TGG | 0.428745 | 8_1:-29640286 | Msa1188890:CDS |
ATGAATTTGTTGTTAACTAT+AGG | 0.433226 | 8_1:-29639466 | Msa1188890:CDS |
AATGTGTCACCACCAAAATA+AGG | 0.439985 | 8_1:+29639656 | None:intergenic |
TGAGATTGAATTGGCAAAGA+AGG | 0.443100 | 8_1:-29639726 | Msa1188890:CDS |
TGATGAGGTTTGGAAGGATA+AGG | 0.450626 | 8_1:-29640276 | Msa1188890:CDS |
TATAAAACCAACTATGAAAA+GGG | 0.461833 | 8_1:+29639609 | None:intergenic |
ATTCCAGTTCTTATCCATAA+GGG | 0.462545 | 8_1:-29640338 | Msa1188890:CDS |
CTCTGAGAAATTGTACTTGT+TGG | 0.463822 | 8_1:-29639408 | Msa1188890:three_prime_UTR |
GTATAAAACCAACTATGAAA+AGG | 0.463905 | 8_1:+29639608 | None:intergenic |
CTATAGGAAGAGGTTTGAGT+TGG | 0.471565 | 8_1:-29639450 | Msa1188890:CDS |
GCAAAGAAGGAGTTGATTGA+AGG | 0.480756 | 8_1:-29639713 | Msa1188890:CDS |
GGCAAAGAGATGCAAGCAAA+GGG | 0.493054 | 8_1:-29639528 | Msa1188890:CDS |
AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8_1:-29639686 | Msa1188890:CDS |
ATCTGTTGCTGATGAGAAAG+AGG | 0.514663 | 8_1:-29639492 | Msa1188890:CDS |
ATTGGAGGAAGGATATGGGC+TGG | 0.515833 | 8_1:-29639758 | Msa1188890:CDS |
TGATATTGGAGGAAGGATAT+GGG | 0.521396 | 8_1:-29639762 | Msa1188890:CDS |
AGGGATAAAGTATGAGTACA+AGG | 0.524364 | 8_1:-29640420 | Msa1188890:CDS |
AACCACTTAGCAACAAAGAA+AGG | 0.531910 | 8_1:+29639242 | None:intergenic |
AGCTTTCTCATAAGGATCTG+AGG | 0.541397 | 8_1:+29640241 | None:intergenic |
TTGTTGTTAACTATAGGAAG+AGG | 0.543349 | 8_1:-29639460 | Msa1188890:CDS |
ATTATGCAACTTCAAAGTTG+AGG | 0.546513 | 8_1:-29639576 | Msa1188890:CDS |
GTATATTGATGAGGTTTGGA+AGG | 0.548215 | 8_1:-29640282 | Msa1188890:CDS |
AAGGATCTGAGGGTAGAAAT+GGG | 0.556042 | 8_1:+29640252 | None:intergenic |
GTATGTTTGGTATGAGAGCA+AGG | 0.566057 | 8_1:-29640460 | Msa1188890:CDS |
ATTGCCTTTAACAATGGCAG+AGG | 0.575167 | 8_1:-29640510 | Msa1188890:exon |
GCTTTCTCATAAGGATCTGA+GGG | 0.584199 | 8_1:+29640242 | None:intergenic |
GGGCAAAGAGATGCAAGCAA+AGG | 0.586185 | 8_1:-29639529 | Msa1188890:CDS |
CAAAGAGATGCAAGCAAAGG+GGG | 0.596822 | 8_1:-29639526 | Msa1188890:CDS |
TATTGTTGAGTATATTGATG+AGG | 0.599628 | 8_1:-29640291 | Msa1188890:CDS |
ACGCAGGTTGGTGATATTGG+AGG | 0.601033 | 8_1:-29639773 | Msa1188890:intron |
TATGAGAGCAAGGATAGCAT+TGG | 0.605598 | 8_1:-29640450 | Msa1188890:CDS |
TGTCACCACCAAAATAAGGT+TGG | 0.621870 | 8_1:+29639660 | None:intergenic |
GCAAAGAGATGCAAGCAAAG+GGG | 0.640147 | 8_1:-29639527 | Msa1188890:CDS |
AGGTTGGTGATATTGGAGGA+AGG | 0.660611 | 8_1:-29639769 | Msa1188890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATACTCAACAATAATTA+TGG | + | chr8_1:29639470-29639489 | None:intergenic | 15.0% |
!! | TAAAAATATGGTAAAAACTT+TGG | + | chr8_1:29639603-29639622 | None:intergenic | 15.0% |
!! | TAATGAATTAAATAACATGA+TGG | - | chr8_1:29639736-29639755 | Msa1188890:CDS | 15.0% |
!! | ACTTATTTGTATAACTATAT+TGG | + | chr8_1:29640441-29640460 | None:intergenic | 15.0% |
!! | AATATACTCAACAATAATTA+TGG | + | chr8_1:29639470-29639489 | None:intergenic | 15.0% |
!! | TAAAAATATGGTAAAAACTT+TGG | + | chr8_1:29639603-29639622 | None:intergenic | 15.0% |
!! | TAATGAATTAAATAACATGA+TGG | - | chr8_1:29639736-29639755 | Msa1188890:CDS | 15.0% |
!! | ACTTATTTGTATAACTATAT+TGG | + | chr8_1:29640441-29640460 | None:intergenic | 15.0% |
!! | AGAGAAAACAATAAAAAAGA+AGG | + | chr8_1:29639765-29639784 | None:intergenic | 20.0% |
!!! | TTGTTTTCTCTAATATTCAA+TGG | - | chr8_1:29639774-29639793 | Msa1188890:intron | 20.0% |
!! | TATCCATATTATTGAATACT+TGG | - | chr8_1:29639929-29639948 | Msa1188890:intron | 20.0% |
!! | TATAAAACCAACTATGAAAA+GGG | + | chr8_1:29640159-29640178 | None:intergenic | 20.0% |
!!! | ATGAATTTGTTGTTAACTAT+AGG | - | chr8_1:29640299-29640318 | Msa1188890:CDS | 20.0% |
!! | AGAGAAAACAATAAAAAAGA+AGG | + | chr8_1:29639765-29639784 | None:intergenic | 20.0% |
!!! | TTGTTTTCTCTAATATTCAA+TGG | - | chr8_1:29639774-29639793 | Msa1188890:intron | 20.0% |
!! | TATCCATATTATTGAATACT+TGG | - | chr8_1:29639929-29639948 | Msa1188890:intron | 20.0% |
!! | TATAAAACCAACTATGAAAA+GGG | + | chr8_1:29640159-29640178 | None:intergenic | 20.0% |
!!! | ATGAATTTGTTGTTAACTAT+AGG | - | chr8_1:29640299-29640318 | Msa1188890:CDS | 20.0% |
!! | AGTTGATATTATTGGATGAA+TGG | - | chr8_1:29639278-29639297 | Msa1188890:three_prime_UTR | 25.0% |
! | ATAATTATGGACTCAGAAAT+TGG | + | chr8_1:29639457-29639476 | None:intergenic | 25.0% |
! | TATTGTTGAGTATATTGATG+AGG | - | chr8_1:29639474-29639493 | Msa1188890:CDS | 25.0% |
!! | ATTTTTACTTATTTCCTGCT+AGG | + | chr8_1:29639626-29639645 | None:intergenic | 25.0% |
!!! | GTATTGTTTTTGCTTTTGAA+TGG | - | chr8_1:29639701-29639720 | Msa1188890:CDS | 25.0% |
! | TTTCTCTAATATTCAATGGA+TGG | - | chr8_1:29639778-29639797 | Msa1188890:intron | 25.0% |
! | ACACCAAGTATTCAATAATA+TGG | + | chr8_1:29639935-29639954 | None:intergenic | 25.0% |
! | TATTGTGTTAAAAAAAACGC+AGG | - | chr8_1:29639976-29639995 | Msa1188890:intron | 25.0% |
! | GTATAAAACCAACTATGAAA+AGG | + | chr8_1:29640160-29640179 | None:intergenic | 25.0% |
!! | TTCTTTTTCTATTAGTGCTT+TGG | - | chr8_1:29640414-29640433 | Msa1188890:CDS | 25.0% |
!! | TATAGTTATGCAAATTTTCC+AGG | - | chr8_1:29640474-29640493 | Msa1188890:CDS | 25.0% |
! | CATAACATTATTTGAAAACC+TGG | + | chr8_1:29640495-29640514 | None:intergenic | 25.0% |
!! | AGTTGATATTATTGGATGAA+TGG | - | chr8_1:29639278-29639297 | Msa1188890:three_prime_UTR | 25.0% |
! | ATAATTATGGACTCAGAAAT+TGG | + | chr8_1:29639457-29639476 | None:intergenic | 25.0% |
! | TATTGTTGAGTATATTGATG+AGG | - | chr8_1:29639474-29639493 | Msa1188890:CDS | 25.0% |
!! | ATTTTTACTTATTTCCTGCT+AGG | + | chr8_1:29639626-29639645 | None:intergenic | 25.0% |
!!! | GTATTGTTTTTGCTTTTGAA+TGG | - | chr8_1:29639701-29639720 | Msa1188890:CDS | 25.0% |
! | TTTCTCTAATATTCAATGGA+TGG | - | chr8_1:29639778-29639797 | Msa1188890:intron | 25.0% |
! | ACACCAAGTATTCAATAATA+TGG | + | chr8_1:29639935-29639954 | None:intergenic | 25.0% |
! | TATTGTGTTAAAAAAAACGC+AGG | - | chr8_1:29639976-29639995 | Msa1188890:intron | 25.0% |
! | GTATAAAACCAACTATGAAA+AGG | + | chr8_1:29640160-29640179 | None:intergenic | 25.0% |
!! | TTCTTTTTCTATTAGTGCTT+TGG | - | chr8_1:29640414-29640433 | Msa1188890:CDS | 25.0% |
!! | TATAGTTATGCAAATTTTCC+AGG | - | chr8_1:29640474-29640493 | Msa1188890:CDS | 25.0% |
! | CATAACATTATTTGAAAACC+TGG | + | chr8_1:29640495-29640514 | None:intergenic | 25.0% |
ATTCCAGTTCTTATCCATAA+GGG | - | chr8_1:29639427-29639446 | Msa1188890:exon | 30.0% | |
TTGAGTATATTGATGAGGTT+TGG | - | chr8_1:29639479-29639498 | Msa1188890:CDS | 30.0% | |
!!! | ACAAGAAGGTAAGTTTTGTT+AGG | - | chr8_1:29639575-29639594 | Msa1188890:CDS | 30.0% |
!! | TTACCATATTTTTACCTAGC+AGG | - | chr8_1:29639609-29639628 | Msa1188890:CDS | 30.0% |
TTTCCTGCTAGGTAAAAATA+TGG | + | chr8_1:29639615-29639634 | None:intergenic | 30.0% | |
ATATTCATATCTCACTAGGA+AGG | + | chr8_1:29639857-29639876 | None:intergenic | 30.0% | |
TCCTAGTGAGATATGAATAT+AGG | - | chr8_1:29639857-29639876 | Msa1188890:intron | 30.0% | |
TCCTATATTCATATCTCACT+AGG | + | chr8_1:29639861-29639880 | None:intergenic | 30.0% | |
ACAGTCCTCATATTTCATAA+TGG | - | chr8_1:29639882-29639901 | Msa1188890:intron | 30.0% | |
! | TCCTCATATTTCATAATGGA+TGG | - | chr8_1:29639886-29639905 | Msa1188890:intron | 30.0% |
TCCATCCATTATGAAATATG+AGG | + | chr8_1:29639890-29639909 | None:intergenic | 30.0% | |
AAAGAGAGATGAGATTGAAT+TGG | - | chr8_1:29640030-29640049 | Msa1188890:intron | 30.0% | |
ATTATGCAACTTCAAAGTTG+AGG | - | chr8_1:29640189-29640208 | Msa1188890:intron | 30.0% | |
! | TTGTTGTTAACTATAGGAAG+AGG | - | chr8_1:29640305-29640324 | Msa1188890:CDS | 30.0% |
ATTCCAGTTCTTATCCATAA+GGG | - | chr8_1:29639427-29639446 | Msa1188890:exon | 30.0% | |
TTGAGTATATTGATGAGGTT+TGG | - | chr8_1:29639479-29639498 | Msa1188890:CDS | 30.0% | |
!!! | ACAAGAAGGTAAGTTTTGTT+AGG | - | chr8_1:29639575-29639594 | Msa1188890:CDS | 30.0% |
!! | TTACCATATTTTTACCTAGC+AGG | - | chr8_1:29639609-29639628 | Msa1188890:CDS | 30.0% |
TTTCCTGCTAGGTAAAAATA+TGG | + | chr8_1:29639615-29639634 | None:intergenic | 30.0% | |
ATATTCATATCTCACTAGGA+AGG | + | chr8_1:29639857-29639876 | None:intergenic | 30.0% | |
TCCTAGTGAGATATGAATAT+AGG | - | chr8_1:29639857-29639876 | Msa1188890:intron | 30.0% | |
TCCTATATTCATATCTCACT+AGG | + | chr8_1:29639861-29639880 | None:intergenic | 30.0% | |
ACAGTCCTCATATTTCATAA+TGG | - | chr8_1:29639882-29639901 | Msa1188890:intron | 30.0% | |
! | TCCTCATATTTCATAATGGA+TGG | - | chr8_1:29639886-29639905 | Msa1188890:intron | 30.0% |
TCCATCCATTATGAAATATG+AGG | + | chr8_1:29639890-29639909 | None:intergenic | 30.0% | |
AAAGAGAGATGAGATTGAAT+TGG | - | chr8_1:29640030-29640049 | Msa1188890:intron | 30.0% | |
ATTATGCAACTTCAAAGTTG+AGG | - | chr8_1:29640189-29640208 | Msa1188890:intron | 30.0% | |
! | TTGTTGTTAACTATAGGAAG+AGG | - | chr8_1:29640305-29640324 | Msa1188890:CDS | 30.0% |
TCTGTGATTGCCTTTAACAA+TGG | - | chr8_1:29639249-29639268 | Msa1188890:three_prime_UTR | 35.0% | |
GATGAATGGCTTAGTATGTT+TGG | - | chr8_1:29639292-29639311 | Msa1188890:three_prime_UTR | 35.0% | |
AGGGATAAAGTATGAGTACA+AGG | - | chr8_1:29639345-29639364 | Msa1188890:three_prime_UTR | 35.0% | |
!! | GGTTCATTTGCAAAAGCATT+TGG | + | chr8_1:29639393-29639412 | None:intergenic | 35.0% |
CTGGAATCTTCTTGTGAATT+GGG | + | chr8_1:29639414-29639433 | None:intergenic | 35.0% | |
ACTGGAATCTTCTTGTGAAT+TGG | + | chr8_1:29639415-29639434 | None:intergenic | 35.0% | |
GATTCCAGTTCTTATCCATA+AGG | - | chr8_1:29639426-29639445 | Msa1188890:exon | 35.0% | |
TTTCCCTTATGGATAAGAAC+TGG | + | chr8_1:29639433-29639452 | None:intergenic | 35.0% | |
!!! | CAGAAATTGGTTTTCCCTTA+TGG | + | chr8_1:29639444-29639463 | None:intergenic | 35.0% |
GTATATTGATGAGGTTTGGA+AGG | - | chr8_1:29639483-29639502 | Msa1188890:CDS | 35.0% | |
GTGTTAAAAAAAACGCAGGT+TGG | - | chr8_1:29639980-29639999 | Msa1188890:intron | 35.0% | |
TGATATTGGAGGAAGGATAT+GGG | - | chr8_1:29640003-29640022 | Msa1188890:intron | 35.0% | |
TGAGATTGAATTGGCAAAGA+AGG | - | chr8_1:29640039-29640058 | Msa1188890:intron | 35.0% | |
AAGGAATTAGAGAATGTGCT+TGG | - | chr8_1:29640079-29640098 | Msa1188890:intron | 35.0% | |
AATGTGTCACCACCAAAATA+AGG | + | chr8_1:29640112-29640131 | None:intergenic | 35.0% | |
!!! | TATTTTGGTGGTGACACATT+TGG | - | chr8_1:29640112-29640131 | Msa1188890:intron | 35.0% |
!!! | ATTTTGGTGGTGACACATTT+GGG | - | chr8_1:29640113-29640132 | Msa1188890:intron | 35.0% |
! | CTTTGATCCCTTTTCATAGT+TGG | - | chr8_1:29640149-29640168 | Msa1188890:intron | 35.0% |
AGTGTGAAAAACTGATTGCT+TGG | - | chr8_1:29640215-29640234 | Msa1188890:CDS | 35.0% | |
GTGTGAAAAACTGATTGCTT+GGG | - | chr8_1:29640216-29640235 | Msa1188890:CDS | 35.0% | |
! | CTCTGAGAAATTGTACTTGT+TGG | - | chr8_1:29640357-29640376 | Msa1188890:CDS | 35.0% |
TCTGTGATTGCCTTTAACAA+TGG | - | chr8_1:29639249-29639268 | Msa1188890:three_prime_UTR | 35.0% | |
GATGAATGGCTTAGTATGTT+TGG | - | chr8_1:29639292-29639311 | Msa1188890:three_prime_UTR | 35.0% | |
AGGGATAAAGTATGAGTACA+AGG | - | chr8_1:29639345-29639364 | Msa1188890:three_prime_UTR | 35.0% | |
!! | GGTTCATTTGCAAAAGCATT+TGG | + | chr8_1:29639393-29639412 | None:intergenic | 35.0% |
CTGGAATCTTCTTGTGAATT+GGG | + | chr8_1:29639414-29639433 | None:intergenic | 35.0% | |
ACTGGAATCTTCTTGTGAAT+TGG | + | chr8_1:29639415-29639434 | None:intergenic | 35.0% | |
GATTCCAGTTCTTATCCATA+AGG | - | chr8_1:29639426-29639445 | Msa1188890:exon | 35.0% | |
TTTCCCTTATGGATAAGAAC+TGG | + | chr8_1:29639433-29639452 | None:intergenic | 35.0% | |
!!! | CAGAAATTGGTTTTCCCTTA+TGG | + | chr8_1:29639444-29639463 | None:intergenic | 35.0% |
GTATATTGATGAGGTTTGGA+AGG | - | chr8_1:29639483-29639502 | Msa1188890:CDS | 35.0% | |
GTGTTAAAAAAAACGCAGGT+TGG | - | chr8_1:29639980-29639999 | Msa1188890:intron | 35.0% | |
TGATATTGGAGGAAGGATAT+GGG | - | chr8_1:29640003-29640022 | Msa1188890:intron | 35.0% | |
TGAGATTGAATTGGCAAAGA+AGG | - | chr8_1:29640039-29640058 | Msa1188890:intron | 35.0% | |
AAGGAATTAGAGAATGTGCT+TGG | - | chr8_1:29640079-29640098 | Msa1188890:intron | 35.0% | |
AATGTGTCACCACCAAAATA+AGG | + | chr8_1:29640112-29640131 | None:intergenic | 35.0% | |
!!! | TATTTTGGTGGTGACACATT+TGG | - | chr8_1:29640112-29640131 | Msa1188890:intron | 35.0% |
!!! | ATTTTGGTGGTGACACATTT+GGG | - | chr8_1:29640113-29640132 | Msa1188890:intron | 35.0% |
! | CTTTGATCCCTTTTCATAGT+TGG | - | chr8_1:29640149-29640168 | Msa1188890:intron | 35.0% |
AGTGTGAAAAACTGATTGCT+TGG | - | chr8_1:29640215-29640234 | Msa1188890:CDS | 35.0% | |
GTGTGAAAAACTGATTGCTT+GGG | - | chr8_1:29640216-29640235 | Msa1188890:CDS | 35.0% | |
! | CTCTGAGAAATTGTACTTGT+TGG | - | chr8_1:29640357-29640376 | Msa1188890:CDS | 35.0% |
ATTGCCTTTAACAATGGCAG+AGG | - | chr8_1:29639255-29639274 | Msa1188890:three_prime_UTR | 40.0% | |
AACTCCTCTGCCATTGTTAA+AGG | + | chr8_1:29639262-29639281 | None:intergenic | 40.0% | |
!! | GGCAGAGGAGTTGATATTAT+TGG | - | chr8_1:29639270-29639289 | Msa1188890:three_prime_UTR | 40.0% |
GTATGTTTGGTATGAGAGCA+AGG | - | chr8_1:29639305-29639324 | Msa1188890:three_prime_UTR | 40.0% | |
TATGAGAGCAAGGATAGCAT+TGG | - | chr8_1:29639315-29639334 | Msa1188890:three_prime_UTR | 40.0% | |
!! | AGGATAGCATTGGCTGAAAA+AGG | - | chr8_1:29639325-29639344 | Msa1188890:three_prime_UTR | 40.0% |
!! | GGATAGCATTGGCTGAAAAA+GGG | - | chr8_1:29639326-29639345 | Msa1188890:three_prime_UTR | 40.0% |
TGATGAGGTTTGGAAGGATA+AGG | - | chr8_1:29639489-29639508 | Msa1188890:CDS | 40.0% | |
AAGGATCTGAGGGTAGAAAT+GGG | + | chr8_1:29639516-29639535 | None:intergenic | 40.0% | |
TAAGGATCTGAGGGTAGAAA+TGG | + | chr8_1:29639517-29639536 | None:intergenic | 40.0% | |
GCTTTCTCATAAGGATCTGA+GGG | + | chr8_1:29639526-29639545 | None:intergenic | 40.0% | |
AGCTTTCTCATAAGGATCTG+AGG | + | chr8_1:29639527-29639546 | None:intergenic | 40.0% | |
! | AGAAAGCTCAAGCCAGATTT+TGG | - | chr8_1:29639539-29639558 | Msa1188890:CDS | 40.0% |
! | GAAAGCTCAAGCCAGATTTT+GGG | - | chr8_1:29639540-29639559 | Msa1188890:CDS | 40.0% |
GACAAAATCAGCCCAAAATC+TGG | + | chr8_1:29639554-29639573 | None:intergenic | 40.0% | |
!! | GGCTGATTTTGTCAACAAGA+AGG | - | chr8_1:29639561-29639580 | Msa1188890:CDS | 40.0% |
CATATCTCACTAGGAAGGAA+AGG | + | chr8_1:29639852-29639871 | None:intergenic | 40.0% | |
!! | AAAACGCAGGTTGGTGATAT+TGG | - | chr8_1:29639989-29640008 | Msa1188890:intron | 40.0% |
GTGATATTGGAGGAAGGATA+TGG | - | chr8_1:29640002-29640021 | Msa1188890:intron | 40.0% | |
! | GCAAAGAAGGAGTTGATTGA+AGG | - | chr8_1:29640052-29640071 | Msa1188890:intron | 40.0% |
! | GGAGTTGATTGAAGGCTTAA+AGG | - | chr8_1:29640060-29640079 | Msa1188890:intron | 40.0% |
!! | CTTGGAGACCAACCTTATTT+TGG | - | chr8_1:29640097-29640116 | Msa1188890:intron | 40.0% |
TGTCACCACCAAAATAAGGT+TGG | + | chr8_1:29640108-29640127 | None:intergenic | 40.0% | |
ATCTGTTGCTGATGAGAAAG+AGG | - | chr8_1:29640273-29640292 | Msa1188890:CDS | 40.0% | |
CTATAGGAAGAGGTTTGAGT+TGG | - | chr8_1:29640315-29640334 | Msa1188890:CDS | 40.0% | |
ATTGCCTTTAACAATGGCAG+AGG | - | chr8_1:29639255-29639274 | Msa1188890:three_prime_UTR | 40.0% | |
AACTCCTCTGCCATTGTTAA+AGG | + | chr8_1:29639262-29639281 | None:intergenic | 40.0% | |
!! | GGCAGAGGAGTTGATATTAT+TGG | - | chr8_1:29639270-29639289 | Msa1188890:three_prime_UTR | 40.0% |
GTATGTTTGGTATGAGAGCA+AGG | - | chr8_1:29639305-29639324 | Msa1188890:three_prime_UTR | 40.0% | |
TATGAGAGCAAGGATAGCAT+TGG | - | chr8_1:29639315-29639334 | Msa1188890:three_prime_UTR | 40.0% | |
!! | AGGATAGCATTGGCTGAAAA+AGG | - | chr8_1:29639325-29639344 | Msa1188890:three_prime_UTR | 40.0% |
!! | GGATAGCATTGGCTGAAAAA+GGG | - | chr8_1:29639326-29639345 | Msa1188890:three_prime_UTR | 40.0% |
TGATGAGGTTTGGAAGGATA+AGG | - | chr8_1:29639489-29639508 | Msa1188890:CDS | 40.0% | |
AAGGATCTGAGGGTAGAAAT+GGG | + | chr8_1:29639516-29639535 | None:intergenic | 40.0% | |
TAAGGATCTGAGGGTAGAAA+TGG | + | chr8_1:29639517-29639536 | None:intergenic | 40.0% | |
GCTTTCTCATAAGGATCTGA+GGG | + | chr8_1:29639526-29639545 | None:intergenic | 40.0% | |
AGCTTTCTCATAAGGATCTG+AGG | + | chr8_1:29639527-29639546 | None:intergenic | 40.0% | |
! | AGAAAGCTCAAGCCAGATTT+TGG | - | chr8_1:29639539-29639558 | Msa1188890:CDS | 40.0% |
! | GAAAGCTCAAGCCAGATTTT+GGG | - | chr8_1:29639540-29639559 | Msa1188890:CDS | 40.0% |
GACAAAATCAGCCCAAAATC+TGG | + | chr8_1:29639554-29639573 | None:intergenic | 40.0% | |
!! | GGCTGATTTTGTCAACAAGA+AGG | - | chr8_1:29639561-29639580 | Msa1188890:CDS | 40.0% |
CATATCTCACTAGGAAGGAA+AGG | + | chr8_1:29639852-29639871 | None:intergenic | 40.0% | |
!! | AAAACGCAGGTTGGTGATAT+TGG | - | chr8_1:29639989-29640008 | Msa1188890:intron | 40.0% |
GTGATATTGGAGGAAGGATA+TGG | - | chr8_1:29640002-29640021 | Msa1188890:intron | 40.0% | |
! | GCAAAGAAGGAGTTGATTGA+AGG | - | chr8_1:29640052-29640071 | Msa1188890:intron | 40.0% |
! | GGAGTTGATTGAAGGCTTAA+AGG | - | chr8_1:29640060-29640079 | Msa1188890:intron | 40.0% |
!! | CTTGGAGACCAACCTTATTT+TGG | - | chr8_1:29640097-29640116 | Msa1188890:intron | 40.0% |
TGTCACCACCAAAATAAGGT+TGG | + | chr8_1:29640108-29640127 | None:intergenic | 40.0% | |
ATCTGTTGCTGATGAGAAAG+AGG | - | chr8_1:29640273-29640292 | Msa1188890:CDS | 40.0% | |
CTATAGGAAGAGGTTTGAGT+TGG | - | chr8_1:29640315-29640334 | Msa1188890:CDS | 40.0% | |
! | CTGGCTTGAGCTTTCTCATA+AGG | + | chr8_1:29639535-29639554 | None:intergenic | 45.0% |
!! | AGGTTGGTGATATTGGAGGA+AGG | - | chr8_1:29639996-29640015 | Msa1188890:intron | 45.0% |
!!! | GGAGACCAACCTTATTTTGG+TGG | - | chr8_1:29640100-29640119 | Msa1188890:intron | 45.0% |
GGCAAAGAGATGCAAGCAAA+GGG | - | chr8_1:29640237-29640256 | Msa1188890:CDS | 45.0% | |
GCAAAGAGATGCAAGCAAAG+GGG | - | chr8_1:29640238-29640257 | Msa1188890:CDS | 45.0% | |
CAAAGAGATGCAAGCAAAGG+GGG | - | chr8_1:29640239-29640258 | Msa1188890:CDS | 45.0% | |
GTTGGACTGAGAAGACAGTT+TGG | - | chr8_1:29640333-29640352 | Msa1188890:CDS | 45.0% | |
! | CTGGCTTGAGCTTTCTCATA+AGG | + | chr8_1:29639535-29639554 | None:intergenic | 45.0% |
!! | AGGTTGGTGATATTGGAGGA+AGG | - | chr8_1:29639996-29640015 | Msa1188890:intron | 45.0% |
!!! | GGAGACCAACCTTATTTTGG+TGG | - | chr8_1:29640100-29640119 | Msa1188890:intron | 45.0% |
GGCAAAGAGATGCAAGCAAA+GGG | - | chr8_1:29640237-29640256 | Msa1188890:CDS | 45.0% | |
GCAAAGAGATGCAAGCAAAG+GGG | - | chr8_1:29640238-29640257 | Msa1188890:CDS | 45.0% | |
CAAAGAGATGCAAGCAAAGG+GGG | - | chr8_1:29640239-29640258 | Msa1188890:CDS | 45.0% | |
GTTGGACTGAGAAGACAGTT+TGG | - | chr8_1:29640333-29640352 | Msa1188890:CDS | 45.0% | |
!! | AATAAAATGAATAAAAAATA+TGG | + | chr8_1:29639960-29639979 | None:intergenic | 5.0% |
!! | AATAAAATGAATAAAAAATA+TGG | + | chr8_1:29639960-29639979 | None:intergenic | 5.0% |
!! | ACGCAGGTTGGTGATATTGG+AGG | - | chr8_1:29639992-29640011 | Msa1188890:intron | 50.0% |
ATTGGAGGAAGGATATGGGC+TGG | - | chr8_1:29640007-29640026 | Msa1188890:intron | 50.0% | |
GGGCAAAGAGATGCAAGCAA+AGG | - | chr8_1:29640236-29640255 | Msa1188890:CDS | 50.0% | |
!! | ACGCAGGTTGGTGATATTGG+AGG | - | chr8_1:29639992-29640011 | Msa1188890:intron | 50.0% |
ATTGGAGGAAGGATATGGGC+TGG | - | chr8_1:29640007-29640026 | Msa1188890:intron | 50.0% | |
GGGCAAAGAGATGCAAGCAA+AGG | - | chr8_1:29640236-29640255 | Msa1188890:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 29639248 | 29640539 | 29639248 | ID=Msa1188890;Name=Msa1188890 |
chr8_1 | mRNA | 29639248 | 29640539 | 29639248 | ID=Msa1188890-mRNA-1;Parent=Msa1188890;Name=Msa1188890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=20|1|1|1|1|1|2|197|219 |
chr8_1 | exon | 29639248 | 29639789 | 29639248 | ID=Msa1188890-mRNA-1:exon:10427;Parent=Msa1188890-mRNA-1 |
chr8_1 | exon | 29640205 | 29640539 | 29640205 | ID=Msa1188890-mRNA-1:exon:10426;Parent=Msa1188890-mRNA-1 |
chr8_1 | five_prime_UTR | 29640520 | 29640539 | 29640520 | ID=Msa1188890-mRNA-1:five_prime_utr;Parent=Msa1188890-mRNA-1 |
chr8_1 | CDS | 29640205 | 29640519 | 29640205 | ID=Msa1188890-mRNA-1:cds;Parent=Msa1188890-mRNA-1 |
chr8_1 | CDS | 29639445 | 29639789 | 29639445 | ID=Msa1188890-mRNA-1:cds;Parent=Msa1188890-mRNA-1 |
chr8_1 | three_prime_UTR | 29639248 | 29639444 | 29639248 | ID=Msa1188890-mRNA-1:three_prime_utr;Parent=Msa1188890-mRNA-1 |
Gene Sequence |
Protein sequence |