AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0670980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0670980 MtrunA17_Chr4g0009941 97.647 255 6 0 1 255 1 255 0.0 511
Msa0670980 MtrunA17_Chr7g0238901 81.569 255 47 0 1 255 75 329 5.37e-158 441
Msa0670980 MtrunA17_Chr8g0338051 30.508 236 125 8 35 248 100 318 7.44e-25 100
Msa0670980 MtrunA17_Chr4g0034391 47.297 74 38 1 107 179 183 256 4.12e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0670980 AT2G37660.1 79.839 248 50 0 8 255 78 325 4.73e-153 429
Msa0670980 AT5G02240.1 80.645 248 48 0 8 255 6 253 1.07e-150 421
Msa0670980 AT4G31530.1 31.405 242 127 8 35 254 100 324 3.73e-24 99.0
Msa0670980 AT4G31530.2 31.963 219 111 7 35 232 100 301 2.23e-22 94.4
Msa0670980 AT2G34460.1 30.588 255 139 11 9 251 49 277 1.17e-18 83.6
Msa0670980 AT3G18890.1 28.910 211 113 6 9 198 84 278 7.63e-13 68.2

Find 94 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTGTTGGTTGGGTCTA+TGG 0.227152 4_4:-13881181 Msa0670980:CDS
TAGGATTAATCATAGATTTC+AGG 0.277787 4_4:-13878911 Msa0670980:three_prime_UTR
TAACCATCCTTTGAACAGTT+TGG 0.309070 4_4:-13881145 Msa0670980:CDS
CAAACCACTGTCCTTGTTAC+TGG 0.319736 4_4:-13883804 Msa0670980:CDS
GAAGAATATCTGTCCAATTC+TGG 0.321510 4_4:-13880905 Msa0670980:CDS
AACCATCCTTTGAACAGTTT+GGG 0.323678 4_4:-13881144 Msa0670980:CDS
TTGTTGTTTGCTGGTAGTTT+AGG 0.333783 4_4:+13883947 None:intergenic
CCTTTGAACAGTTTGGGAAA+TGG 0.335160 4_4:-13881138 Msa0670980:CDS
TTGAATTGAATTGAATTTGA+TGG 0.336203 4_4:+13883841 None:intergenic
GAAGAAAGCAAACAGAAAAT+TGG 0.341940 4_4:-13882125 Msa0670980:CDS
GCATCTGTACCTTGAATTGC+AGG 0.352388 4_4:+13882050 None:intergenic
CAGCAAAACACTAATGACTT+TGG 0.359334 4_4:+13878973 None:intergenic
CGATGAAGAAAAGAAGGTTC+TGG 0.363458 4_4:+13883904 None:intergenic
AAACTCAGGCCTTCCACCTT+TGG 0.364997 4_4:+13881974 None:intergenic
CGTGTAAGGAACACCAGAAT+TGG 0.372936 4_4:+13880892 None:intergenic
CCAAACCTCTGGCAATATAT+TGG 0.375239 4_4:+13882156 None:intergenic
TATGATAGGTTGACTGGATT+GGG 0.379614 4_4:-13881831 Msa0670980:intron
AAACTGTTCAAAGGATGGTT+AGG 0.380370 4_4:+13881147 None:intergenic
ATTGTGTTGGTTGGGTCTAT+GGG 0.382254 4_4:-13881180 Msa0670980:CDS
AAGAGGTTGTTGTTGTTTGC+TGG 0.384283 4_4:+13883938 None:intergenic
CCAATATATTGCCAGAGGTT+TGG 0.384643 4_4:-13882156 Msa0670980:CDS
AGCAAAACACTAATGACTTT+GGG 0.396957 4_4:+13878974 None:intergenic
TTGATAAAGAAGGAGGTGTT+CGG 0.404923 4_4:-13880071 Msa0670980:CDS
TCAAATTCAATTCAATTCAA+TGG 0.405654 4_4:-13883838 Msa0670980:exon
AATTGCAGGAACAATGCTTT+CGG 0.413542 4_4:+13882064 None:intergenic
CTTTACCTCCACAAATAAGT+TGG 0.413556 4_4:-13878937 Msa0670980:three_prime_UTR
AAAGCCTTGAAGTCCTTTGT+TGG 0.422367 4_4:+13879089 None:intergenic
TCCTACATCCAACTTATTTG+TGG 0.432393 4_4:+13878929 None:intergenic
CAAACCCAGGTTTCATTTGT+GGG 0.437050 4_4:+13882003 None:intergenic
AATAGCATTAGCACCTGTTC+GGG 0.437397 4_4:+13881930 None:intergenic
GTTGGTTCACCTGCACCCTC+AGG 0.437593 4_4:+13879107 None:intergenic
TAATAGCATTAGCACCTGTT+CGG 0.437611 4_4:+13881929 None:intergenic
ATTCAATTCAATTCAATGGC+AGG 0.439004 4_4:-13883834 Msa0670980:exon
ATATGATAGGTTGACTGGAT+TGG 0.441585 4_4:-13881832 Msa0670980:intron
TTTGGGAAATGGAAATATAC+TGG 0.444100 4_4:-13881127 Msa0670980:intron
AGCATTGTTCCTGCAATTCA+AGG 0.445346 4_4:-13882059 Msa0670980:CDS
GGAGGTAAAGTAATTTGCTT+TGG 0.450160 4_4:+13878950 None:intergenic
TCAAACCCAGGTTTCATTTG+TGG 0.465991 4_4:+13882002 None:intergenic
TGTAGCAGAAGTCTGCGTTC+AGG 0.467309 4_4:-13879983 Msa0670980:intron
TGAACCAACAAAGGACTTCA+AGG 0.468496 4_4:-13879093 Msa0670980:CDS
ACTGTCCTTGTTACTGGTGC+TGG 0.468562 4_4:-13883798 Msa0670980:CDS
TTCTGATCTAACCAAACCTC+TGG 0.473775 4_4:+13882145 None:intergenic
TTGACAGGCACTAAATTATG+AGG 0.476024 4_4:-13879165 Msa0670980:intron
TGATAAAGAAGGAGGTGTTC+GGG 0.478613 4_4:-13880070 Msa0670980:CDS
TGAAGCATATTGTGTTGGTT+GGG 0.478830 4_4:-13881188 Msa0670980:CDS
TGCTGGTAGTTTAGGAACAT+TGG 0.484573 4_4:+13883955 None:intergenic
CTATAAACAGCTAAGGCTGC+AGG 0.498326 4_4:-13881213 Msa0670980:intron
TCAGGCCTTCCACCTTTGGT+TGG 0.499708 4_4:+13881978 None:intergenic
CGGAAGGATTGCTATGACCA+CGG 0.500314 4_4:+13878755 None:intergenic
TGATGGTTCATATCCCGAAC+AGG 0.500943 4_4:-13881943 Msa0670980:intron
TTCCCAAACTGTTCAAAGGA+TGG 0.501526 4_4:+13881142 None:intergenic
AACTGTTCAAAGGATGGTTA+GGG 0.504635 4_4:+13881148 None:intergenic
CCATTTCCCAAACTGTTCAA+AGG 0.506648 4_4:+13881138 None:intergenic
GTGTTCCTTACACGATCATA+AGG 0.509941 4_4:-13880883 Msa0670980:intron
GTGTACCTTATGATCGTGTA+AGG 0.517539 4_4:+13880878 None:intergenic
GTGAAGCATATTGTGTTGGT+TGG 0.518358 4_4:-13881189 Msa0670980:CDS
GGTGTTCGGGAACTCATTGT+AGG 0.524165 4_4:-13880057 Msa0670980:CDS
GCATCAAAACCTGAGGGTGC+AGG 0.524749 4_4:-13879116 Msa0670980:CDS
TTATGAGGAGACTAAATTCA+AGG 0.530143 4_4:-13879150 Msa0670980:CDS
GTGTTGGTTGGGTCTATGGG+TGG 0.540126 4_4:-13881177 Msa0670980:CDS
CATTGTTGATTCAGACCTGG+TGG 0.546083 4_4:-13880099 Msa0670980:intron
TTTAAATGTATCTGTACGGA+AGG 0.546648 4_4:+13878739 None:intergenic
GCTGTCCCACAAATGAAACC+TGG 0.549601 4_4:-13882008 Msa0670980:CDS
TGAGGACGATGAAGAAAAGA+AGG 0.550001 4_4:+13883898 None:intergenic
AATATTTAAATGTATCTGTA+CGG 0.560370 4_4:+13878735 None:intergenic
GAAAGCAAACAGAAAATTGG+TGG 0.572686 4_4:-13882122 Msa0670980:CDS
CCTTTGGTTGGATCAAACCC+AGG 0.573204 4_4:+13881990 None:intergenic
GGTGGCTTGCTTGATAAAGA+AGG 0.575976 4_4:-13880081 Msa0670980:CDS
ACTGGTGCTGGTGGTCGCAC+AGG 0.581423 4_4:-13883786 Msa0670980:intron
TCTTTATCAAGCAAGCCACC+AGG 0.585110 4_4:+13880084 None:intergenic
CCATCATCAAAATAAAACTC+AGG 0.589184 4_4:+13881960 None:intergenic
ACTTCTGCTACATCAGCTCT+AGG 0.589981 4_4:+13879994 None:intergenic
TACATCCAACTTATTTGTGG+AGG 0.591584 4_4:+13878932 None:intergenic
TCGGGAACTCATTGTAGGAA+AGG 0.591768 4_4:-13880052 Msa0670980:CDS
GGGTTTGATCCAACCAAAGG+TGG 0.593347 4_4:-13881987 Msa0670980:CDS
TCCACAAATAAGTTGGATGT+AGG 0.595524 4_4:-13878930 Msa0670980:three_prime_UTR
GGAAGGATTGCTATGACCAC+GGG 0.601276 4_4:+13878756 None:intergenic
TTGATCCAACCAAAGGTGGA+AGG 0.601871 4_4:-13881983 Msa0670980:CDS
ACTTCTAGTTTCTTGACCCG+TGG 0.605388 4_4:-13878772 Msa0670980:three_prime_UTR
TTCTGGATTATGTTGTGAAG+AGG 0.606355 4_4:+13883921 None:intergenic
CGCGACCAATATATTGCCAG+AGG 0.611486 4_4:-13882161 Msa0670980:CDS
GACCACCAGCACCAGTAACA+AGG 0.614518 4_4:+13883793 None:intergenic
GTCCTTGTTACTGGTGCTGG+TGG 0.619985 4_4:-13883795 Msa0670980:CDS
CTGTCCCACAAATGAAACCT+GGG 0.620890 4_4:-13882007 Msa0670980:CDS
AGGAGTGAAGCATATTGTGT+TGG 0.636269 4_4:-13881193 Msa0670980:CDS
TTGGAGAGACAGTGTGTACG+TGG 0.643416 4_4:+13883974 None:intergenic
GGGTGCAGGTGAACCAACAA+AGG 0.644031 4_4:-13879102 Msa0670980:CDS
GACCTAGCATCAAAACCTGA+GGG 0.644948 4_4:-13879122 Msa0670980:CDS
CCTGGGTTTGATCCAACCAA+AGG 0.647766 4_4:-13881990 Msa0670980:CDS
ATGTGATTATTGTCTAACAA+TGG 0.650932 4_4:-13879005 Msa0670980:three_prime_UTR
TGACCTAGCATCAAAACCTG+AGG 0.657872 4_4:-13879123 Msa0670980:CDS
ACACTCAATGGATACTGATG+AGG 0.661704 4_4:+13883880 None:intergenic
AGCACCAGTAACAAGGACAG+TGG 0.717449 4_4:+13883800 None:intergenic
GGCTTGCTTGATAAAGAAGG+AGG 0.735031 4_4:-13880078 Msa0670980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAATTTTATTTGAAT+TGG - chr4_4:13878980-13878999 Msa0670980:three_prime_UTR 10.0%
!!! TTTTCAATTTTATTTGAATT+GGG - chr4_4:13878981-13879000 Msa0670980:three_prime_UTR 10.0%
!!! AAATTTTTAATTTACACAAA+GGG + chr4_4:13879590-13879609 None:intergenic 10.0%
!!! AAATTTTTTTAAGCATATAT+AGG - chr4_4:13882302-13882321 Msa0670980:intron 10.0%
!!! AATTTTTTTAAGCATATATA+GGG - chr4_4:13882303-13882322 Msa0670980:intron 10.0%
!!! TAATAATATTGCTTTTAATT+TGG + chr4_4:13883806-13883825 None:intergenic 10.0%
!!! TTTCAATTTTATTTGAATTG+GGG - chr4_4:13878982-13879001 Msa0670980:three_prime_UTR 15.0%
!!! GAAATTTTTAATTTACACAA+AGG + chr4_4:13879591-13879610 None:intergenic 15.0%
!!! ATAAAAACTTATGCATTTTT+AGG + chr4_4:13880917-13880936 None:intergenic 15.0%
!!! AAAATGTTATCATTCTATTT+TGG + chr4_4:13881615-13881634 None:intergenic 15.0%
!!! ATTATGAAACATTTTTATCT+TGG - chr4_4:13882047-13882066 Msa0670980:CDS 15.0%
!! TTTATCAAATATTCAATTGT+TGG + chr4_4:13882331-13882350 None:intergenic 15.0%
!! ATCAATATCAAAAATAGAAT+CGG - chr4_4:13883363-13883382 Msa0670980:intron 15.0%
!! AATATTTAAATGTATCTGTA+CGG + chr4_4:13883890-13883909 None:intergenic 15.0%
!!! TAAATATTTTTTTACGATCA+TGG - chr4_4:13883902-13883921 Msa0670980:five_prime_UTR 15.0%
!! TTGAATTGAATTGAATTTGA+TGG + chr4_4:13878784-13878803 None:intergenic 20.0%
!! TCAAATTCAATTCAATTCAA+TGG - chr4_4:13878784-13878803 Msa0670980:three_prime_UTR 20.0%
!!! GCTTATTCAAAAAAACATTT+TGG + chr4_4:13879107-13879126 None:intergenic 20.0%
!!! TAATCCAAGATTTTAAATCA+CGG - chr4_4:13879280-13879299 Msa0670980:intron 20.0%
!! CATTTGTAACAATATTTGAA+AGG + chr4_4:13879648-13879667 None:intergenic 20.0%
!! GAAAATAAAATAAGCGTAAA+GGG + chr4_4:13879685-13879704 None:intergenic 20.0%
!! TGAAAATAAAATAAGCGTAA+AGG + chr4_4:13879686-13879705 None:intergenic 20.0%
!!! GCTTATTTTATTTTCAAACA+TGG - chr4_4:13879690-13879709 Msa0670980:intron 20.0%
!!! TTATTTTCAAACATGGAAAA+AGG - chr4_4:13879697-13879716 Msa0670980:intron 20.0%
!! CTACAGAAAAATTACAAATA+GGG - chr4_4:13879833-13879852 Msa0670980:intron 20.0%
!! TATTCTACTTCAATAATAGT+CGG + chr4_4:13879944-13879963 None:intergenic 20.0%
!! TACCAAAAATAGTACTTATT+AGG - chr4_4:13880065-13880084 Msa0670980:CDS 20.0%
!!! TTCCTAATAAGTACTATTTT+TGG + chr4_4:13880070-13880089 None:intergenic 20.0%
!! ATACCAAACCTAATAATATA+AGG - chr4_4:13881037-13881056 Msa0670980:intron 20.0%
!! AAACAGATCCTTATATTATT+AGG + chr4_4:13881048-13881067 None:intergenic 20.0%
!!! CAGATACGTTTTAAAAAAAA+TGG + chr4_4:13881144-13881163 None:intergenic 20.0%
!! AAATGAAGTAACTAAAGTAT+TGG + chr4_4:13881536-13881555 None:intergenic 20.0%
!!! AACTCATATATGTTTTAACA+TGG + chr4_4:13881780-13881799 None:intergenic 20.0%
!! TAAAAAACTTTCAGAATACT+TGG - chr4_4:13881975-13881994 Msa0670980:CDS 20.0%
!!! AATAGTGATTTGTTCAAATT+CGG + chr4_4:13882119-13882138 None:intergenic 20.0%
!! ATATTATCTCTTATAGAACT+TGG - chr4_4:13882663-13882682 Msa0670980:intron 20.0%
!! TATTATCTCTTATAGAACTT+GGG - chr4_4:13882664-13882683 Msa0670980:intron 20.0%
!! TTTAATCATTGAAATTCTAG+TGG - chr4_4:13882773-13882792 Msa0670980:intron 20.0%
!! ACAAATTTGACTAAAAAAAG+TGG + chr4_4:13883038-13883057 None:intergenic 20.0%
!!! TATATTTTCAAAAGCTGAAT+CGG - chr4_4:13883394-13883413 Msa0670980:intron 20.0%
!!! TTCAATGAACTTTTATTCTT+AGG + chr4_4:13883744-13883763 None:intergenic 20.0%
! AAAACAAAAACAACACTCAA+TGG + chr4_4:13878757-13878776 None:intergenic 25.0%
!!! TTTGTTTTGTTACAGAATTG+AGG - chr4_4:13878921-13878940 Msa0670980:three_prime_UTR 25.0%
!! TGAGAATTTTCTCAAATTGA+AGG - chr4_4:13879017-13879036 Msa0670980:three_prime_UTR 25.0%
! TTAACATACCAAAATGTTAC+AGG - chr4_4:13879217-13879236 Msa0670980:intron 25.0%
! TAACATACCAAAATGTTACA+GGG - chr4_4:13879218-13879237 Msa0670980:intron 25.0%
!! TCTTGGATTAGATATTTGTA+CGG + chr4_4:13879270-13879289 None:intergenic 25.0%
! TGTGAAATCAACTTAATGTA+AGG + chr4_4:13879502-13879521 None:intergenic 25.0%
! TCATATAGTTCAACTAGTTA+AGG - chr4_4:13879743-13879762 Msa0670980:intron 25.0%
! TCTTTGATTAAACAAACGAA+AGG - chr4_4:13879797-13879816 Msa0670980:intron 25.0%
! CTTTGATTAAACAAACGAAA+GGG - chr4_4:13879798-13879817 Msa0670980:intron 25.0%
!! CCTATTTGTAATTTTTCTGT+AGG + chr4_4:13879835-13879854 None:intergenic 25.0%
! CCTACAGAAAAATTACAAAT+AGG - chr4_4:13879832-13879851 Msa0670980:intron 25.0%
! AAAAATTACAAATAGGGAGA+GGG - chr4_4:13879839-13879858 Msa0670980:intron 25.0%
!!! CTATTTTTGGTATAGTAGAT+TGG + chr4_4:13880057-13880076 None:intergenic 25.0%
! TAGCGATACATTTATTACTT+GGG + chr4_4:13880167-13880186 None:intergenic 25.0%
! TTAGCGATACATTTATTACT+TGG + chr4_4:13880168-13880187 None:intergenic 25.0%
! AACCTATCATATGAAAAAGT+AGG + chr4_4:13880782-13880801 None:intergenic 25.0%
!! TTGAAGTTTTCAATCTTCTT+AGG - chr4_4:13880953-13880972 Msa0670980:intron 25.0%
! GATCCTTATATTATTAGGTT+TGG + chr4_4:13881043-13881062 None:intergenic 25.0%
! GAAAATGATAACAGAAAACA+TGG + chr4_4:13881076-13881095 None:intergenic 25.0%
!! TGTTATCATTTTCACTTCAA+CGG - chr4_4:13881083-13881102 Msa0670980:intron 25.0%
!! TTCATTTTAAATTGCCAACA+AGG + chr4_4:13881259-13881278 None:intergenic 25.0%
! TGAAAACTGAAAATGTTTGT+AGG - chr4_4:13881275-13881294 Msa0670980:intron 25.0%
! AAATGTTTGTAGGAAGTAAA+CGG - chr4_4:13881285-13881304 Msa0670980:intron 25.0%
! TTTATCTCTATAAACAGCTA+AGG - chr4_4:13881402-13881421 Msa0670980:intron 25.0%
! TATAGTTTCATCTTAATTGC+AGG - chr4_4:13881677-13881696 Msa0670980:intron 25.0%
!!! TCTTTTCAGTTTTGTTTTCA+CGG - chr4_4:13881807-13881826 Msa0670980:intron 25.0%
! GTATATTCAAAATAGTTTCC+TGG + chr4_4:13881920-13881939 None:intergenic 25.0%
! TGCAATATTATCTTGATATC+CGG - chr4_4:13881942-13881961 Msa0670980:intron 25.0%
!!! AGTTTTTTAACTCAAACAAC+CGG + chr4_4:13881964-13881983 None:intergenic 25.0%
! TACAAAACATTGTCAATAAG+TGG - chr4_4:13882160-13882179 Msa0670980:CDS 25.0%
!! ACTATAGATTTGTATTGATG+GGG + chr4_4:13882935-13882954 None:intergenic 25.0%
!! CACTATAGATTTGTATTGAT+GGG + chr4_4:13882936-13882955 None:intergenic 25.0%
! ACACTATAGATTTGTATTGA+TGG + chr4_4:13882937-13882956 None:intergenic 25.0%
!!! TTTTTTAGTCAAATTTGTGC+AGG - chr4_4:13883040-13883059 Msa0670980:intron 25.0%
! TTGAATCTTGAATTACTTTG+AGG - chr4_4:13883095-13883114 Msa0670980:intron 25.0%
!! GAAGAACTATTTTATGAATC+GGG + chr4_4:13883226-13883245 None:intergenic 25.0%
!! GGAAGAACTATTTTATGAAT+CGG + chr4_4:13883227-13883246 None:intergenic 25.0%
!! ATTGATTATACTAGTCTAGT+TGG + chr4_4:13883315-13883334 None:intergenic 25.0%
!!! GCTTTTGAAAATATAGTCAT+TGG + chr4_4:13883389-13883408 None:intergenic 25.0%
! ATGTGATTATTGTCTAACAA+TGG - chr4_4:13883617-13883636 Msa0670980:intron 25.0%
! TAGGATTAATCATAGATTTC+AGG - chr4_4:13883711-13883730 Msa0670980:intron 25.0%
ATTCAATTCAATTCAATGGC+AGG - chr4_4:13878788-13878807 Msa0670980:three_prime_UTR 30.0%
! AAATTCTCCCTGTAACATTT+TGG + chr4_4:13879228-13879247 None:intergenic 30.0%
GAGAATTTGTACTTATGTCA+TGG - chr4_4:13879240-13879259 Msa0670980:intron 30.0%
AATTTGTACTTATGTCATGG+CGG - chr4_4:13879243-13879262 Msa0670980:intron 30.0%
! AATTTGACAGTAATTTTCCG+CGG + chr4_4:13879340-13879359 None:intergenic 30.0%
CGGAAAATTACTGTCAAATT+CGG - chr4_4:13879340-13879359 Msa0670980:intron 30.0%
!! GGACTATTTCTTTAAAACCA+TGG - chr4_4:13879435-13879454 Msa0670980:intron 30.0%
! TTCACACTGATTAGTGTTAT+TGG + chr4_4:13879554-13879573 None:intergenic 30.0%
TGTGTGAAATTCAGTCTATA+AGG - chr4_4:13879617-13879636 Msa0670980:intron 30.0%
GAAAAATTACAAATAGGGAG+AGG - chr4_4:13879838-13879857 Msa0670980:intron 30.0%
TATGATGTTCACATTATCCT+TGG + chr4_4:13879917-13879936 None:intergenic 30.0%
TTCTAAACATGAAAGCAAGT+TGG - chr4_4:13879994-13880013 Msa0670980:CDS 30.0%
AGCGATACATTTATTACTTG+GGG + chr4_4:13880166-13880185 None:intergenic 30.0%
! TATACTACTAGTAGAAGTAC+AGG + chr4_4:13880246-13880265 None:intergenic 30.0%
TCTACTAGTAGTATATGACT+TGG - chr4_4:13880251-13880270 Msa0670980:intron 30.0%
!!! GATTTGTTGGTTAACTTTTC+AGG - chr4_4:13880407-13880426 Msa0670980:intron 30.0%
GAAGAAAGCAAACAGAAAAT+TGG - chr4_4:13880497-13880516 Msa0670980:intron 30.0%
!! GTGCTGATGATATTTTCATT+GGG - chr4_4:13880522-13880541 Msa0670980:intron 30.0%
! TGCTGATGATATTTTCATTG+GGG - chr4_4:13880523-13880542 Msa0670980:intron 30.0%
CCATCATCAAAATAAAACTC+AGG + chr4_4:13880665-13880684 None:intergenic 30.0%
!!! CCTGAGTTTTATTTTGATGA+TGG - chr4_4:13880662-13880681 Msa0670980:intron 30.0%
AAAATGTTCTTAGCATGCAT+AGG + chr4_4:13880726-13880745 None:intergenic 30.0%
!!! GACCTACTTTTTCATATGAT+AGG - chr4_4:13880777-13880796 Msa0670980:intron 30.0%
!! TTTTCATATGATAGGTTGAC+TGG - chr4_4:13880785-13880804 Msa0670980:intron 30.0%
CAGAAAAATCAAATAGATGC+TGG - chr4_4:13880814-13880833 Msa0670980:intron 30.0%
TTCAATCTTCTTAGGAATCT+TGG - chr4_4:13880961-13880980 Msa0670980:intron 30.0%
TTTAAAAACATTCCGAATGG+GGG + chr4_4:13880994-13881013 None:intergenic 30.0%
GTTTAAAAACATTCCGAATG+GGG + chr4_4:13880995-13881014 None:intergenic 30.0%
CGTTTAAAAACATTCCGAAT+GGG + chr4_4:13880996-13881015 None:intergenic 30.0%
!! CCATTCGGAATGTTTTTAAA+CGG - chr4_4:13880994-13881013 Msa0670980:intron 30.0%
! ATTTTAAATTGCCAACAAGG+TGG + chr4_4:13881256-13881275 None:intergenic 30.0%
AATGTTTGTAGGAAGTAAAC+GGG - chr4_4:13881286-13881305 Msa0670980:intron 30.0%
GAATCTCAACTAATGATTTC+TGG - chr4_4:13881315-13881334 Msa0670980:intron 30.0%
TTTGGGAAATGGAAATATAC+TGG - chr4_4:13881495-13881514 Msa0670980:intron 30.0%
TTTCATCTTAATTGCAGGTT+TGG - chr4_4:13881682-13881701 Msa0670980:intron 30.0%
! CAGATATTTTCTTCTTTCCA+CGG + chr4_4:13882010-13882029 None:intergenic 30.0%
TTGTCAATCACGAAAAATAG+TGG + chr4_4:13882230-13882249 None:intergenic 30.0%
! TTTTCGTGATTGACAAACAA+TGG - chr4_4:13882234-13882253 Msa0670980:intron 30.0%
ATTGACAAACAATGGTATGT+AGG - chr4_4:13882242-13882261 Msa0670980:intron 30.0%
TGATAAACGTACTCATCTAA+TGG - chr4_4:13882363-13882382 Msa0670980:intron 30.0%
TTGATCGAATTTGTCTCATA+TGG - chr4_4:13882857-13882876 Msa0670980:intron 30.0%
TTTGACTAAAAAAAGTGGCA+GGG + chr4_4:13883033-13883052 None:intergenic 30.0%
ATTTGACTAAAAAAAGTGGC+AGG + chr4_4:13883034-13883053 None:intergenic 30.0%
TCAAGGTTCATATTGTGAAT+TGG + chr4_4:13883248-13883267 None:intergenic 30.0%
! CTTGATTTGATAACCATGTA+GGG - chr4_4:13883263-13883282 Msa0670980:intron 30.0%
!!! CTTCATTTTGTTGATTTGAC+AGG - chr4_4:13883442-13883461 Msa0670980:intron 30.0%
TTATGAGGAGACTAAATTCA+AGG - chr4_4:13883472-13883491 Msa0670980:intron 30.0%
TCAAAAACGAGAATTGATCT+GGG + chr4_4:13883564-13883583 None:intergenic 30.0%
ATCAAAAACGAGAATTGATC+TGG + chr4_4:13883565-13883584 None:intergenic 30.0%
!!! TCGTTTTTGATTTCGAATGT+GGG - chr4_4:13883574-13883593 Msa0670980:intron 30.0%
AGCAAAACACTAATGACTTT+GGG + chr4_4:13883651-13883670 None:intergenic 30.0%
TTTAAATGTATCTGTACGGA+AGG + chr4_4:13883886-13883905 None:intergenic 30.0%
!! TTGTTGTTTGCTGGTAGTTT+AGG + chr4_4:13878678-13878697 None:intergenic 35.0%
TTCTGGATTATGTTGTGAAG+AGG + chr4_4:13878704-13878723 None:intergenic 35.0%
TTGGTATGTTAAACCCACTT+GGG + chr4_4:13879209-13879228 None:intergenic 35.0%
TTTGGTATGTTAAACCCACT+TGG + chr4_4:13879210-13879229 None:intergenic 35.0%
! GTGACCGTGATTTAAAATCT+TGG + chr4_4:13879287-13879306 None:intergenic 35.0%
AAAGCACAAAACCATTGCAA+CGG - chr4_4:13879408-13879427 Msa0670980:intron 35.0%
TAGAAATCCATCAAAGTCGT+AGG - chr4_4:13879468-13879487 Msa0670980:intron 35.0%
TTATCCTTGGCAAAGACTAT+AGG + chr4_4:13879904-13879923 None:intergenic 35.0%
GAGAAAGATGAAATAGATCG+AGG - chr4_4:13880103-13880122 Msa0670980:intron 35.0%
AGATGAAGCAAACTCAAAAG+TGG - chr4_4:13880129-13880148 Msa0670980:intron 35.0%
TCCGTTCTAATACAATAGTG+AGG - chr4_4:13880334-13880353 Msa0670980:intron 35.0%
CCCTCACTATTGTATTAGAA+CGG + chr4_4:13880338-13880357 None:intergenic 35.0%
CCGTTCTAATACAATAGTGA+GGG - chr4_4:13880335-13880354 Msa0670980:intron 35.0%
! GAACTCTCAATGTGATTTGT+TGG - chr4_4:13880394-13880413 Msa0670980:intron 35.0%
GAAAGCAAACAGAAAATTGG+TGG - chr4_4:13880500-13880519 Msa0670980:intron 35.0%
!!! GGTGCTGATGATATTTTCAT+TGG - chr4_4:13880521-13880540 Msa0670980:intron 35.0%
AATTGCAGGAACAATGCTTT+CGG + chr4_4:13880561-13880580 None:intergenic 35.0%
TAATAGCATTAGCACCTGTT+CGG + chr4_4:13880696-13880715 None:intergenic 35.0%
! ATATGATAGGTTGACTGGAT+TGG - chr4_4:13880790-13880809 Msa0670980:intron 35.0%
! TATGATAGGTTGACTGGATT+GGG - chr4_4:13880791-13880810 Msa0670980:intron 35.0%
TTCTATCCATTACTCGTACA+CGG - chr4_4:13880851-13880870 Msa0670980:intron 35.0%
CCGTTTAAAAACATTCCGAA+TGG + chr4_4:13880997-13881016 None:intergenic 35.0%
ATGTTTGTAGGAAGTAAACG+GGG - chr4_4:13881287-13881306 Msa0670980:intron 35.0%
!! TGAAGCATATTGTGTTGGTT+GGG - chr4_4:13881434-13881453 Msa0670980:intron 35.0%
AACTGTTCAAAGGATGGTTA+GGG + chr4_4:13881477-13881496 None:intergenic 35.0%
AAACTGTTCAAAGGATGGTT+AGG + chr4_4:13881478-13881497 None:intergenic 35.0%
TAACCATCCTTTGAACAGTT+TGG - chr4_4:13881477-13881496 Msa0670980:intron 35.0%
AACCATCCTTTGAACAGTTT+GGG - chr4_4:13881478-13881497 Msa0670980:intron 35.0%
GAAGAATATCTGTCCAATTC+TGG - chr4_4:13881717-13881736 Msa0670980:intron 35.0%
!! GTTTTAACATGGACAAGAAC+TGG + chr4_4:13881769-13881788 None:intergenic 35.0%
GGTTCAGCTATGACTATTAA+AGG + chr4_4:13881899-13881918 None:intergenic 35.0%
TTAATAGTCATAGCTGAACC+AGG - chr4_4:13881899-13881918 Msa0670980:intron 35.0%
GTAGCAATGTTGTCAAATTG+CGG - chr4_4:13882072-13882091 Msa0670980:CDS 35.0%
TTGTCAATAAGTGGCTATAG+AGG - chr4_4:13882169-13882188 Msa0670980:CDS 35.0%
AACAATGGTATGTAGGTACT+TGG - chr4_4:13882249-13882268 Msa0670980:intron 35.0%
!! TTGATAAAGAAGGAGGTGTT+CGG - chr4_4:13882551-13882570 Msa0670980:intron 35.0%
!! GAGCACTTGCTGATAATTTT+GGG + chr4_4:13882739-13882758 None:intergenic 35.0%
! TGGCTCGTGAATTTGTTTAT+TGG - chr4_4:13882793-13882812 Msa0670980:intron 35.0%
! CACTTTCTAGCAAAAACAAG+TGG + chr4_4:13883157-13883176 None:intergenic 35.0%
CCTACATGGTTATCAAATCA+AGG + chr4_4:13883265-13883284 None:intergenic 35.0%
! CCTTGATTTGATAACCATGT+AGG - chr4_4:13883262-13883281 Msa0670980:intron 35.0%
TAACCATGTAGGGAAATATC+AGG - chr4_4:13883273-13883292 Msa0670980:intron 35.0%
GAATCGGTTATTGTGAGATT+TGG - chr4_4:13883410-13883429 Msa0670980:intron 35.0%
TTGACAGGCACTAAATTATG+AGG - chr4_4:13883457-13883476 Msa0670980:intron 35.0%
!!! CTCGTTTTTGATTTCGAATG+TGG - chr4_4:13883573-13883592 Msa0670980:intron 35.0%
CAGCAAAACACTAATGACTT+TGG + chr4_4:13883652-13883671 None:intergenic 35.0%
!! GGAGGTAAAGTAATTTGCTT+TGG + chr4_4:13883675-13883694 None:intergenic 35.0%
CTTTACCTCCACAAATAAGT+TGG - chr4_4:13883685-13883704 Msa0670980:intron 35.0%
TACATCCAACTTATTTGTGG+AGG + chr4_4:13883693-13883712 None:intergenic 35.0%
! TCCACAAATAAGTTGGATGT+AGG - chr4_4:13883692-13883711 Msa0670980:intron 35.0%
TCCTACATCCAACTTATTTG+TGG + chr4_4:13883696-13883715 None:intergenic 35.0%
! GTTCTGATTTTTGTGTCATC+CGG - chr4_4:13883935-13883954 Msa0670980:five_prime_UTR 35.0%
! TTCTGATTTTTGTGTCATCC+GGG - chr4_4:13883936-13883955 Msa0670980:five_prime_UTR 35.0%
TGCTGGTAGTTTAGGAACAT+TGG + chr4_4:13878670-13878689 None:intergenic 40.0%
!! AAGAGGTTGTTGTTGTTTGC+TGG + chr4_4:13878687-13878706 None:intergenic 40.0%
CGATGAAGAAAAGAAGGTTC+TGG + chr4_4:13878721-13878740 None:intergenic 40.0%
TGAGGACGATGAAGAAAAGA+AGG + chr4_4:13878727-13878746 None:intergenic 40.0%
ACACTCAATGGATACTGATG+AGG + chr4_4:13878745-13878764 None:intergenic 40.0%
TCTTGAATTTCTTGATGCCG+CGG - chr4_4:13879320-13879339 Msa0670980:intron 40.0%
!! ATTTCTAGTCTGCTTGACCA+TGG + chr4_4:13879455-13879474 None:intergenic 40.0%
AATGTCACCTACGACTTTGA+TGG + chr4_4:13879478-13879497 None:intergenic 40.0%
TGTGTGATCTCCTAGTTACA+CGG - chr4_4:13879528-13879547 Msa0670980:intron 40.0%
! TTTTTCTGTAGGCTGTGTTC+AGG + chr4_4:13879824-13879843 None:intergenic 40.0%
AGACTATAGGAACTAGATGC+TGG + chr4_4:13879891-13879910 None:intergenic 40.0%
AGTTCCTATAGTCTTTGCCA+AGG - chr4_4:13879897-13879916 Msa0670980:intron 40.0%
CCAAACCTCTGGCAATATAT+TGG + chr4_4:13880469-13880488 None:intergenic 40.0%
CCAATATATTGCCAGAGGTT+TGG - chr4_4:13880466-13880485 Msa0670980:intron 40.0%
TTCTGATCTAACCAAACCTC+TGG + chr4_4:13880480-13880499 None:intergenic 40.0%
AGCATTGTTCCTGCAATTCA+AGG - chr4_4:13880563-13880582 Msa0670980:intron 40.0%
CAAACCCAGGTTTCATTTGT+GGG + chr4_4:13880622-13880641 None:intergenic 40.0%
TCAAACCCAGGTTTCATTTG+TGG + chr4_4:13880623-13880642 None:intergenic 40.0%
AATAGCATTAGCACCTGTTC+GGG + chr4_4:13880695-13880714 None:intergenic 40.0%
!! CGAGTAATGGATAGAAAGCA+TGG + chr4_4:13880847-13880866 None:intergenic 40.0%
TAATTGCGATAGAGGGAAGA+TGG + chr4_4:13881219-13881238 None:intergenic 40.0%
ACGCGAATAATTGCGATAGA+GGG + chr4_4:13881226-13881245 None:intergenic 40.0%
GCATGAGTGAATAACGACTT+TGG + chr4_4:13881364-13881383 None:intergenic 40.0%
AGGAGTGAAGCATATTGTGT+TGG - chr4_4:13881429-13881448 Msa0670980:intron 40.0%
! GTGAAGCATATTGTGTTGGT+TGG - chr4_4:13881433-13881452 Msa0670980:intron 40.0%
!! TATTGTGTTGGTTGGGTCTA+TGG - chr4_4:13881441-13881460 Msa0670980:intron 40.0%
!! ATTGTGTTGGTTGGGTCTAT+GGG - chr4_4:13881442-13881461 Msa0670980:intron 40.0%
TTCCCAAACTGTTCAAAGGA+TGG + chr4_4:13881483-13881502 None:intergenic 40.0%
CCATTTCCCAAACTGTTCAA+AGG + chr4_4:13881487-13881506 None:intergenic 40.0%
CCTTTGAACAGTTTGGGAAA+TGG - chr4_4:13881484-13881503 Msa0670980:intron 40.0%
GTGTTCCTTACACGATCATA+AGG - chr4_4:13881739-13881758 Msa0670980:intron 40.0%
GTGTACCTTATGATCGTGTA+AGG + chr4_4:13881747-13881766 None:intergenic 40.0%
!! ATACTTGGTGTCATTATCCG+TGG - chr4_4:13881990-13882009 Msa0670980:CDS 40.0%
TCTATAGTACTGTAGTGCTG+CGG - chr4_4:13882193-13882212 Msa0670980:CDS 40.0%
AACGTACTCATCTAATGGCT+TGG - chr4_4:13882368-13882387 Msa0670980:intron 40.0%
ACGTACTCATCTAATGGCTT+GGG - chr4_4:13882369-13882388 Msa0670980:intron 40.0%
!! CTTCATTGTTGATTCAGACC+TGG - chr4_4:13882520-13882539 Msa0670980:intron 40.0%
!! TGATAAAGAAGGAGGTGTTC+GGG - chr4_4:13882552-13882571 Msa0670980:intron 40.0%
!! CGAGCACTTGCTGATAATTT+TGG + chr4_4:13882740-13882759 None:intergenic 40.0%
CTAGCAAAAACAAGTGGCAT+AGG + chr4_4:13883151-13883170 None:intergenic 40.0%
GTTCCTGATATTTCCCTACA+TGG + chr4_4:13883279-13883298 None:intergenic 40.0%
TGAACCAACAAAGGACTTCA+AGG - chr4_4:13883529-13883548 Msa0670980:intron 40.0%
AAAGCCTTGAAGTCCTTTGT+TGG + chr4_4:13883536-13883555 None:intergenic 40.0%
!! CGTAAAAACTTGTTGCAACC+CGG + chr4_4:13883957-13883976 None:intergenic 40.0%
CAAACCACTGTCCTTGTTAC+TGG - chr4_4:13878818-13878837 Msa0670980:three_prime_UTR 45.0%
! TCGAGGTCTCTGGTTCAATT+GGG + chr4_4:13879142-13879161 None:intergenic 45.0%
! TTCGAGGTCTCTGGTTCAAT+TGG + chr4_4:13879143-13879162 None:intergenic 45.0%
! TTGGGTTGTCATGGTGGTAT+TGG + chr4_4:13879191-13879210 None:intergenic 45.0%
! TAAACCCACTTGGGTTGTCA+TGG + chr4_4:13879200-13879219 None:intergenic 45.0%
! GTGTTATTGGCCGTGTAACT+AGG + chr4_4:13879541-13879560 None:intergenic 45.0%
ATAGGGAGAGGGAACAGATT+TGG - chr4_4:13879850-13879869 Msa0670980:intron 45.0%
ATAGGAACTAGATGCTGGCA+GGG + chr4_4:13879886-13879905 None:intergenic 45.0%
TATAGGAACTAGATGCTGGC+AGG + chr4_4:13879887-13879906 None:intergenic 45.0%
GCATCTGTACCTTGAATTGC+AGG + chr4_4:13880575-13880594 None:intergenic 45.0%
CTGTCCCACAAATGAAACCT+GGG - chr4_4:13880615-13880634 Msa0670980:intron 45.0%
TTGATCCAACCAAAGGTGGA+AGG - chr4_4:13880639-13880658 Msa0670980:intron 45.0%
TGATGGTTCATATCCCGAAC+AGG - chr4_4:13880679-13880698 Msa0670980:intron 45.0%
AAAACATTCCGAATGGGGGT+GGG + chr4_4:13880990-13881009 None:intergenic 45.0%
AAAAACATTCCGAATGGGGG+TGG + chr4_4:13880991-13881010 None:intergenic 45.0%
CACGCGAATAATTGCGATAG+AGG + chr4_4:13881227-13881246 None:intergenic 45.0%
CTATAAACAGCTAAGGCTGC+AGG - chr4_4:13881409-13881428 Msa0670980:intron 45.0%
CGTGTAAGGAACACCAGAAT+TGG + chr4_4:13881733-13881752 None:intergenic 45.0%
! TGTTTTCACGGTCCCAAACT+CGG - chr4_4:13881819-13881838 Msa0670980:CDS 45.0%
! TTTTGACCTGTGCAATGCAC+AGG + chr4_4:13881857-13881876 None:intergenic 45.0%
!! CATTGTTGATTCAGACCTGG+TGG - chr4_4:13882523-13882542 Msa0670980:intron 45.0%
TCTTTATCAAGCAAGCCACC+AGG + chr4_4:13882541-13882560 None:intergenic 45.0%
!! GGTGGCTTGCTTGATAAAGA+AGG - chr4_4:13882541-13882560 Msa0670980:intron 45.0%
! GGCTTGCTTGATAAAGAAGG+AGG - chr4_4:13882544-13882563 Msa0670980:intron 45.0%
TCGGGAACTCATTGTAGGAA+AGG - chr4_4:13882570-13882589 Msa0670980:intron 45.0%
GCAAGTGCTCGAGTGAATTA+TGG - chr4_4:13882749-13882768 Msa0670980:intron 45.0%
TCTGCTCATGAATCTCTACG+TGG - chr4_4:13882965-13882984 Msa0670980:intron 45.0%
CTGCTCATGAATCTCTACGT+GGG - chr4_4:13882966-13882985 Msa0670980:intron 45.0%
TGACCTAGCATCAAAACCTG+AGG - chr4_4:13883499-13883518 Msa0670980:intron 45.0%
GACCTAGCATCAAAACCTGA+GGG - chr4_4:13883500-13883519 Msa0670980:intron 45.0%
!! ACTTCTAGTTTCTTGACCCG+TGG - chr4_4:13883850-13883869 Msa0670980:five_prime_UTR 45.0%
TTGGAGAGACAGTGTGTACG+TGG + chr4_4:13878651-13878670 None:intergenic 50.0%
AGCACCAGTAACAAGGACAG+TGG + chr4_4:13878825-13878844 None:intergenic 50.0%
ACTGTCCTTGTTACTGGTGC+TGG - chr4_4:13878824-13878843 Msa0670980:three_prime_UTR 50.0%
! GGTCTCTGGTTCAATTGGGT+GGG + chr4_4:13879138-13879157 None:intergenic 50.0%
! AGGTCTCTGGTTCAATTGGG+TGG + chr4_4:13879139-13879158 None:intergenic 50.0%
TTGAACCAGAGACCTCGAAG+AGG - chr4_4:13879144-13879163 Msa0670980:CDS 50.0%
TACCACCATGACAACCCAAG+TGG - chr4_4:13879192-13879211 Msa0670980:intron 50.0%
ACCACCATGACAACCCAAGT+GGG - chr4_4:13879193-13879212 Msa0670980:intron 50.0%
CAAAACCATTGCAACGGTCG+TGG - chr4_4:13879414-13879433 Msa0670980:intron 50.0%
ATAGTCCACGACCGTTGCAA+TGG + chr4_4:13879422-13879441 None:intergenic 50.0%
GGAGAGGGAACAGATTTGGA+GGG - chr4_4:13879854-13879873 Msa0670980:intron 50.0%
CGCGACCAATATATTGCCAG+AGG - chr4_4:13880461-13880480 Msa0670980:intron 50.0%
GCTGTCCCACAAATGAAACC+TGG - chr4_4:13880614-13880633 Msa0670980:intron 50.0%
CCTTTGGTTGGATCAAACCC+AGG + chr4_4:13880635-13880654 None:intergenic 50.0%
CCTGGGTTTGATCCAACCAA+AGG - chr4_4:13880632-13880651 Msa0670980:intron 50.0%
GGGTTTGATCCAACCAAAGG+TGG - chr4_4:13880635-13880654 Msa0670980:intron 50.0%
AAACTCAGGCCTTCCACCTT+TGG + chr4_4:13880651-13880670 None:intergenic 50.0%
CAAACGCCGTGTACGAGTAA+TGG + chr4_4:13880860-13880879 None:intergenic 50.0%
CATTACTCGTACACGGCGTT+TGG - chr4_4:13880858-13880877 Msa0670980:intron 50.0%
GGGAAGATGGAAAGCAAGCT+AGG + chr4_4:13881206-13881225 None:intergenic 50.0%
TAGGTGGTCTGTCCGAGTTT+GGG + chr4_4:13881834-13881853 None:intergenic 50.0%
GGTGTTCGGGAACTCATTGT+AGG - chr4_4:13882565-13882584 Msa0670980:intron 50.0%
TGTAGCAGAAGTCTGCGTTC+AGG - chr4_4:13882639-13882658 Msa0670980:intron 50.0%
TGGCAGGGTGCATTAAGCTT+AGG + chr4_4:13883018-13883037 None:intergenic 50.0%
GGCATAGGAACATTACGAGC+AGG + chr4_4:13883136-13883155 None:intergenic 50.0%
!! CACCCTCAGGTTTTGATGCT+AGG + chr4_4:13883505-13883524 None:intergenic 50.0%
GGAAGGATTGCTATGACCAC+GGG + chr4_4:13883869-13883888 None:intergenic 50.0%
CGGAAGGATTGCTATGACCA+CGG + chr4_4:13883870-13883889 None:intergenic 50.0%
! GTCCTTGTTACTGGTGCTGG+TGG - chr4_4:13878827-13878846 Msa0670980:three_prime_UTR 55.0%
GACCACCAGCACCAGTAACA+AGG + chr4_4:13878832-13878851 None:intergenic 55.0%
! TGAGAGTGTGCTCCTCTTCG+AGG + chr4_4:13879159-13879178 None:intergenic 55.0%
! TCGAAGAGGAGCACACTCTC+AGG - chr4_4:13879158-13879177 Msa0670980:CDS 55.0%
! ACCCACTTGGGTTGTCATGG+TGG + chr4_4:13879197-13879216 None:intergenic 55.0%
GGGAGAGGGAACAGATTTGG+AGG - chr4_4:13879853-13879872 Msa0670980:intron 55.0%
TCAGGCCTTCCACCTTTGGT+TGG + chr4_4:13880647-13880666 None:intergenic 55.0%
CTTGGATTCCCACCCCCATT+CGG - chr4_4:13880979-13880998 Msa0670980:intron 55.0%
GCGTGAGTCTTCCACCTTGT+TGG - chr4_4:13881242-13881261 Msa0670980:intron 55.0%
!! GTGTTGGTTGGGTCTATGGG+TGG - chr4_4:13881445-13881464 Msa0670980:intron 55.0%
GTAGGTGGTCTGTCCGAGTT+TGG + chr4_4:13881835-13881854 None:intergenic 55.0%
CTGTGCAATGCACAGGTAGG+TGG + chr4_4:13881850-13881869 None:intergenic 55.0%
CACCTACCTGTGCATTGCAC+AGG - chr4_4:13881848-13881867 Msa0670980:intron 55.0%
GACCTGTGCAATGCACAGGT+AGG + chr4_4:13881853-13881872 None:intergenic 55.0%
! GCATCAAAACCTGAGGGTGC+AGG - chr4_4:13883506-13883525 Msa0670980:intron 55.0%
GGGTGCAGGTGAACCAACAA+AGG - chr4_4:13883520-13883539 Msa0670980:intron 55.0%
GTGCTCCTCTTCGAGGTCTC+TGG + chr4_4:13879152-13879171 None:intergenic 60.0%
! GTTGGTTCACCTGCACCCTC+AGG + chr4_4:13883518-13883537 None:intergenic 60.0%
!! ACTGGTGCTGGTGGTCGCAC+AGG - chr4_4:13878836-13878855 Msa0670980:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 13878630 13884014 13878630 ID=Msa0670980;Name=Msa0670980
chr4_4 mRNA 13878630 13884014 13878630 ID=Msa0670980-mRNA-1;Parent=Msa0670980;Name=Msa0670980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=173|1|1|1|0.85|0.75|8|411|255
chr4_4 exon 13878630 13878711 13878630 ID=Msa0670980-mRNA-1:exon:4229;Parent=Msa0670980-mRNA-1
chr4_4 exon 13878732 13879180 13878732 ID=Msa0670980-mRNA-1:exon:4228;Parent=Msa0670980-mRNA-1
chr4_4 exon 13879984 13880107 13879984 ID=Msa0670980-mRNA-1:exon:4227;Parent=Msa0670980-mRNA-1
chr4_4 exon 13880884 13880945 13880884 ID=Msa0670980-mRNA-1:exon:4226;Parent=Msa0670980-mRNA-1
chr4_4 exon 13881128 13881225 13881128 ID=Msa0670980-mRNA-1:exon:4225;Parent=Msa0670980-mRNA-1
chr4_4 exon 13881809 13881845 13881809 ID=Msa0670980-mRNA-1:exon:4224;Parent=Msa0670980-mRNA-1
chr4_4 exon 13881944 13882215 13881944 ID=Msa0670980-mRNA-1:exon:4223;Parent=Msa0670980-mRNA-1
chr4_4 exon 13883787 13884014 13883787 ID=Msa0670980-mRNA-1:exon:4222;Parent=Msa0670980-mRNA-1
chr4_4 five_prime_UTR 13883842 13884014 13883842 ID=Msa0670980-mRNA-1:five_prime_utr;Parent=Msa0670980-mRNA-1
chr4_4 CDS 13883787 13883841 13883787 ID=Msa0670980-mRNA-1:cds;Parent=Msa0670980-mRNA-1
chr4_4 CDS 13881944 13882215 13881944 ID=Msa0670980-mRNA-1:cds;Parent=Msa0670980-mRNA-1
chr4_4 CDS 13881809 13881845 13881809 ID=Msa0670980-mRNA-1:cds;Parent=Msa0670980-mRNA-1
chr4_4 CDS 13881128 13881225 13881128 ID=Msa0670980-mRNA-1:cds;Parent=Msa0670980-mRNA-1
chr4_4 CDS 13880884 13880945 13880884 ID=Msa0670980-mRNA-1:cds;Parent=Msa0670980-mRNA-1
chr4_4 CDS 13879984 13880107 13879984 ID=Msa0670980-mRNA-1:cds;Parent=Msa0670980-mRNA-1
chr4_4 CDS 13879061 13879180 13879061 ID=Msa0670980-mRNA-1:cds;Parent=Msa0670980-mRNA-1
chr4_4 three_prime_UTR 13878732 13879060 13878732 ID=Msa0670980-mRNA-1:three_prime_utr;Parent=Msa0670980-mRNA-1
chr4_4 three_prime_UTR 13878630 13878711 13878630 ID=Msa0670980-mRNA-1:three_prime_utr;Parent=Msa0670980-mRNA-1
Gene Sequence

>Msa0670980

ATGGCAGGTTCATCTCAAACCACTGTCCTTGTTACTGGTGCTGGTGGTCGCACAGGACAAATTGTGTATAAAAAGTTAAAAGAGAAGCGCGACCAATATATTGCCAGAGGTTTGGTTAGATCAGAAGAAAGCAAACAGAAAATTGGTGGTGCTGATGATATTTTCATTGGGGATATCAGAAATGCCGAAAGCATTGTTCCTGCAATTCAAGGTACAGATGCTCTCATCATTCTCACTAGTGCTGTCCCACAAATGAAACCTGGGTTTGATCCAACCAAAGGTGGAAGGCCTGAGTTTTATTTTGATGATGGTTCATATCCCGAACAGGTTGACTGGATTGGGCAGAAAAATCAAATAGATGCTGCTAAGGCTGCAGGAGTGAAGCATATTGTGTTGGTTGGGTCTATGGGTGGAACAAACCCTAACCATCCTTTGAACAGTTTGGGAAATGGAAATATACTGGTTTGGAAAAGAAAAGCTGAAGAATATCTGTCCAATTCTGGTGTTCCTTACACGATCATAAGACCTGGTGGCTTGCTTGATAAAGAAGGAGGTGTTCGGGAACTCATTGTAGGAAAGGATGATGAACTTCTTCAGACCGAAACTAAAACTATTCCTAGAGCTGATGTAGCAGAAGTCTGCGTTCAGGCACTAAATTATGAGGAGACTAAATTCAAGGCATTTGACCTAGCATCAAAACCTGAGGGTGCAGGTGAACCAACAAAGGACTTCAAGGCTTTGTTTTCCCAGATCAATTCTCGTTTTTGA

Protein sequence

>Msa0670980

MAGSSQTTVLVTGAGGRTGQIVYKKLKEKRDQYIARGLVRSEESKQKIGGADDIFIGDIRNAESIVPAIQGTDALIILTSAVPQMKPGFDPTKGGRPEFYFDDGSYPEQVDWIGQKNQIDAAKAAGVKHIVLVGSMGGTNPNHPLNSLGNGNILVWKRKAEEYLSNSGVPYTIIRPGGLLDKEGGVRELIVGKDDELLQTETKTIPRADVAEVCVQALNYEETKFKAFDLASKPEGAGEPTKDFKALFSQINSRF*