AlfalfaGEDB | Msa1250890

M. sativa cultivar zhongmu-4 / Msa1250890

KEGG: K09716
GO: GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006399 GO:0006450 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051499 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360
PFAM: PF04414.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1250890	GAU38864.1	94.690	113	6	0	24	136	184	296	1.81e-70	223

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1250890	sp\|Q9ZPQ3\|GEK1_ARATH	70.435	115	30	1	25	135	202	316	3.83e-54	175

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1250890	A0A2Z6N1Z1	94.690	113	6	0	24	136	184	296	8.66e-71	223

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001790	Msa1250890	0.814993	1.161057e-51	-8.615850e-47
Msa0006070	Msa1250890	0.812911	3.339778e-51	-8.615850e-47
Msa0007440	Msa1250890	0.813069	3.085174e-51	-8.615850e-47
Msa0011170	Msa1250890	0.820456	6.794867e-53	-8.615850e-47
Msa0012040	Msa1250890	0.825070	5.727110e-54	-8.615850e-47
Msa0013050	Msa1250890	-0.818668	1.738589e-52	-8.615850e-47
Msa0014710	Msa1250890	0.821800	3.330161e-53	-8.615850e-47
Msa0015610	Msa1250890	0.815207	1.040430e-51	-8.615850e-47
Msa0017070	Msa1250890	0.800418	1.454702e-48	-8.615850e-47
Msa0017510	Msa1250890	0.817068	3.994736e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1250890	MtrunA17_Chr8g0366111	93.805	113	7	0	24	136	246	358	2.93e-73	222

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1250890	AT2G03800.1	70.435	115	30	1	25	135	202	316	3.90e-55	175
Msa1250890	AT2G03800.2	70.435	115	30	1	25	135	246	360	6.83e-55	176

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Find 44 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCCTTCTTGGGATAGG+CGG	0.642444	8_2:-46636652	Msa1250890:CDS
AACACTACATCCATATGCCG+AGG	0.663300	8_2:+46636616	None:intergenic
AACACTCAATAAAAGTAATT+TGG	0.197331	8_2:+46635748	None:intergenic
AAGAAAGTCCTTCTTGGGAT+AGG	0.543921	8_2:-46636655	Msa1250890:CDS
AATATAGGAAAGATGATGTT+TGG	0.316445	8_2:-46636235	Msa1250890:intron
AATGTGCAGATTGCAGACAT+AGG	0.599856	8_2:-46635696	Msa1250890:three_prime_UTR
AATTCGCCAAATAAATACAT+AGG	0.569581	8_2:+46635475	None:intergenic
AATTTACTGCAGGAGTTTCA+AGG	0.417491	8_2:-46635830	Msa1250890:intron
ACATTATGTGCCTCGGCATA+TGG	0.407678	8_2:-46636626	Msa1250890:CDS
ACTAACTGCAGGATTTCAGA+AGG	0.571436	8_2:+46637746	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCTTCTTCTTGGATAACT+AGG	-	chr8_2:46635684-46635703	Msa1250890:three_prime_UTR	30.0%
TAGCAAATTAATCAGACACT+TGG	-	chr8_2:46635722-46635741	Msa1250890:three_prime_UTR	30.0%
AACTGTGCATAGTATTACAA+GGG	+	chr8_2:46635793-46635812	None:intergenic	30.0%
TCTCTCTTATGTCTGAAAAA+TGG	-	chr8_2:46635841-46635860	Msa1250890:intron	30.0%
ATGCATGAAGGAATAATATG+AGG	+	chr8_2:46636110-46636129	None:intergenic	30.0%
ATATGCAATTCAGAAAGCTT+AGG	+	chr8_2:46636145-46636164	None:intergenic	30.0%
ATAAGAAGAAAGTCCTTCTT+GGG	-	chr8_2:46636570-46636589	Msa1250890:intron	30.0%
CTGCACACTTAAATAGATTA+TGG	-	chr8_2:46636698-46636717	Msa1250890:intron	30.0%
ATGCACATTAAACTTACCTT+TGG	+	chr8_2:46637176-46637195	None:intergenic	30.0%
TGCAAACAATTGATTACAGA+AGG	+	chr8_2:46637202-46637221	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	46635430	46637822	46635430	ID=Msa1250890;Name=Msa1250890
chr8_2	mRNA	46635430	46637822	46635430	ID=Msa1250890-mRNA-1;Parent=Msa1250890;Name=Msa1250890-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0\|0.66\|0.75\|1\|1\|1\|4\|323\|136
chr8_2	exon	46635430	46635840	46635430	ID=Msa1250890-mRNA-1:exon:14153;Parent=Msa1250890-mRNA-1
chr8_2	exon	46636074	46636250	46636074	ID=Msa1250890-mRNA-1:exon:14152;Parent=Msa1250890-mRNA-1
chr8_2	exon	46636616	46636690	46636616	ID=Msa1250890-mRNA-1:exon:14151;Parent=Msa1250890-mRNA-1
chr8_2	exon	46637752	46637822	46637752	ID=Msa1250890-mRNA-1:exon:14150;Parent=Msa1250890-mRNA-1
chr8_2	CDS	46637752	46637822	46637752	ID=Msa1250890-mRNA-1:cds;Parent=Msa1250890-mRNA-1
chr8_2	CDS	46636616	46636690	46636616	ID=Msa1250890-mRNA-1:cds;Parent=Msa1250890-mRNA-1
chr8_2	CDS	46636074	46636250	46636074	ID=Msa1250890-mRNA-1:cds;Parent=Msa1250890-mRNA-1
chr8_2	CDS	46635753	46635840	46635753	ID=Msa1250890-mRNA-1:cds;Parent=Msa1250890-mRNA-1
chr8_2	three_prime_UTR	46635430	46635752	46635430	ID=Msa1250890-mRNA-1:three_prime_utr;Parent=Msa1250890-mRNA-1

Gene Sequence

>Msa1250890

ATGGTGAGGCTTCTCTCTTCTCCCTCTTCTTTAAGGAAAGGGAATCTGAGTTTTCCTTCTGAAATCCTGCAGGAGAATGATAAGAAGAAAGTCCTTCTTGGGATAGGCGGTGGACATTATGTGCCTCGGCATATGGATGTAGTGTTGAAAGATGATGTTTGGGTTGGTCACCTACTTTCTGGATATTCGGTGCCAATGGAAGATCCAAAAGGAGAAACAAATGTAGAGATTGGAGGAACTTGGAAACAGTCTATAAAAGCTGCATACGAGGCAACTAAATCTGCTTTTCCTGGTGGCGAAATTATTGCGCATCTTGACCAAAGGAGTTTCAAGGGCTGGCAGAAGAATGCCATCACAGGATTCCTCGCGGAGCAGAATATTAAAATTGGAAAGCCAAATTACTTTTATTGA

Protein sequence

>Msa1250890

MVRLLSSPSSLRKGNLSFPSEILQENDKKKVLLGIGGGHYVPRHMDVVLKDDVWVGHLLSGYSVPMEDPKGETNVEIGGTWKQSIKAAYEATKSAFPGGEIIAHLDQRSFKGWQKNAITGFLAEQNIKIGKPNYFY*