AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1250890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250890 MtrunA17_Chr8g0366111 93.805 113 7 0 24 136 246 358 2.93e-73 222
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1250890 AT2G03800.1 70.435 115 30 1 25 135 202 316 3.90e-55 175
Msa1250890 AT2G03800.2 70.435 115 30 1 25 135 246 360 6.83e-55 176

Find 44 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTCTCCCTCTTCTTTA+AGG 0.099613 8_2:-46637787 Msa1250890:CDS
TCTACATTTGTTTCTCCTTT+TGG 0.150136 8_2:+46636170 None:intergenic
TGGGTTGGTCACCTACTTTC+TGG 0.174476 8_2:-46636215 Msa1250890:CDS
AACACTCAATAAAAGTAATT+TGG 0.197331 8_2:+46635748 None:intergenic
TATGTACCTATGTATTTATT+TGG 0.225111 8_2:-46635481 Msa1250890:three_prime_UTR
GCGGAGCAGAATATTAAAAT+TGG 0.268594 8_2:-46635775 Msa1250890:CDS
AATATAGGAAAGATGATGTT+TGG 0.316445 8_2:-46636235 Msa1250890:intron
TCACCTACTTTCTGGATATT+CGG 0.318220 8_2:-46636207 Msa1250890:CDS
GATAAGAAGAAAGTCCTTCT+TGG 0.358937 8_2:-46636661 Msa1250890:CDS
CTCCCTCTTCTTTAAGGAAA+GGG 0.375889 8_2:-46637781 Msa1250890:CDS
GGAGAAACAAATGTAGAGAT+TGG 0.379058 8_2:-46636164 Msa1250890:CDS
ACATTATGTGCCTCGGCATA+TGG 0.407678 8_2:-46636626 Msa1250890:CDS
AATTTACTGCAGGAGTTTCA+AGG 0.417491 8_2:-46635830 Msa1250890:intron
ATAAGAAGAAAGTCCTTCTT+GGG 0.451631 8_2:-46636660 Msa1250890:CDS
TTATTGAGTGTTGATTTAAG+AGG 0.465194 8_2:-46635737 Msa1250890:exon
TTCTGGATATTCGGTGCCAA+TGG 0.497093 8_2:-46636198 Msa1250890:CDS
TTCCCTTTCCTTAAAGAAGA+GGG 0.503208 8_2:+46637779 None:intergenic
ATGTAGAGATTGGAGGAACT+TGG 0.504571 8_2:-46636154 Msa1250890:CDS
ATATAGGAAAGATGATGTTT+GGG 0.508580 8_2:-46636234 Msa1250890:intron
TCTCCCTCTTCTTTAAGGAA+AGG 0.508950 8_2:-46637782 Msa1250890:CDS
GTCCTTCTTGGGATAGGCGG+TGG 0.509514 8_2:-46636649 Msa1250890:CDS
ATTTACTGCAGGAGTTTCAA+GGG 0.511764 8_2:-46635829 Msa1250890:intron
TGGCAGAAGAATGCCATCAC+AGG 0.525499 8_2:-46635805 Msa1250890:CDS
TGCGCAATAATTTCGCCACC+AGG 0.526598 8_2:+46636086 None:intergenic
AGGAAAGATGATGTTTGGGT+TGG 0.533495 8_2:-46636230 Msa1250890:CDS
AAGAAAGTCCTTCTTGGGAT+AGG 0.543921 8_2:-46636655 Msa1250890:CDS
ACTGCAGGAGTTTCAAGGGC+TGG 0.545446 8_2:-46635825 Msa1250890:intron
GAAACAAATGTAGAGATTGG+AGG 0.558298 8_2:-46636161 Msa1250890:CDS
CTCCGCGAGGAATCCTGTGA+TGG 0.566946 8_2:+46635792 None:intergenic
ATTCCCTTTCCTTAAAGAAG+AGG 0.567548 8_2:+46637778 None:intergenic
AATTCGCCAAATAAATACAT+AGG 0.569581 8_2:+46635475 None:intergenic
ACTAACTGCAGGATTTCAGA+AGG 0.571436 8_2:+46637746 None:intergenic
GCACCGAATATCCAGAAAGT+AGG 0.580008 8_2:+46636204 None:intergenic
GTGCCAATGGAAGATCCAAA+AGG 0.584393 8_2:-46636185 Msa1250890:CDS
GTCTATAAAAGCTGCATACG+AGG 0.587763 8_2:-46636126 Msa1250890:CDS
CTGATAATGCAGCCATGGTG+AGG 0.589998 8_2:-46637814 None:intergenic
GCGGTGGACATTATGTGCCT+CGG 0.594821 8_2:-46636633 Msa1250890:CDS
AATGTGCAGATTGCAGACAT+AGG 0.599856 8_2:-46635696 Msa1250890:three_prime_UTR
TTATTGCGCATCTTGACCAA+AGG 0.621535 8_2:-46636073 Msa1250890:intron
GTCCACCGCCTATCCCAAGA+AGG 0.624058 8_2:+46636647 None:intergenic
AAAGTCCTTCTTGGGATAGG+CGG 0.642444 8_2:-46636652 Msa1250890:CDS
AACACTACATCCATATGCCG+AGG 0.663300 8_2:+46636616 None:intergenic
AGAAGAGAGAAGCCTCACCA+TGG 0.684856 8_2:+46637802 None:intergenic
TGCCATCACAGGATTCCTCG+CGG 0.720531 8_2:-46635794 Msa1250890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAGAAAAATAAAAC+GGG + chr8_2:46635930-46635949 None:intergenic 10.0%
!!! AAGTTAATTTTTTTTATTCA+AGG + chr8_2:46636957-46636976 None:intergenic 10.0%
!!! GTTTGATATATATATTTTTT+TGG - chr8_2:46637304-46637323 Msa1250890:intron 10.0%
!! ATAAAAAAGAAAAATAAAAC+GGG + chr8_2:46635930-46635949 None:intergenic 10.0%
!!! AAGTTAATTTTTTTTATTCA+AGG + chr8_2:46636957-46636976 None:intergenic 10.0%
!!! GTTTGATATATATATTTTTT+TGG - chr8_2:46637304-46637323 Msa1250890:intron 10.0%
!!! CCTTAACTTAAATTATTTTT+GGG - chr8_2:46635888-46635907 Msa1250890:intron 15.0%
!! CATTGATAAAAAATTTAACT+TGG + chr8_2:46636439-46636458 None:intergenic 15.0%
!!! TTTTAGAGATTTTTAATAGA+AGG - chr8_2:46637628-46637647 Msa1250890:intron 15.0%
!!! CCTTAACTTAAATTATTTTT+GGG - chr8_2:46635888-46635907 Msa1250890:intron 15.0%
!! CATTGATAAAAAATTTAACT+TGG + chr8_2:46636439-46636458 None:intergenic 15.0%
!!! TTTTAGAGATTTTTAATAGA+AGG - chr8_2:46637628-46637647 Msa1250890:intron 15.0%
!!! GCCTTAACTTAAATTATTTT+TGG - chr8_2:46635887-46635906 Msa1250890:intron 20.0%
!!! CCCAAAAATAATTTAAGTTA+AGG + chr8_2:46635891-46635910 None:intergenic 20.0%
!! TTATTTATAAATACCATGTC+AGG - chr8_2:46635958-46635977 Msa1250890:intron 20.0%
!! TTCTATAATGAAAAATGAGA+AGG + chr8_2:46636393-46636412 None:intergenic 20.0%
!!! TTAAAGTTTCCTTCTAAAAT+CGG - chr8_2:46636494-46636513 Msa1250890:intron 20.0%
!! ATTATGGGAATAAATTACAT+TGG - chr8_2:46636714-46636733 Msa1250890:intron 20.0%
!!! TTTTTTTATTCAAGGTAACA+AGG + chr8_2:46636949-46636968 None:intergenic 20.0%
!! AACACTCAATAAAAGTAATT+TGG + chr8_2:46637485-46637504 None:intergenic 20.0%
!!! CTCTATTAGAAATAATTTTC+AGG - chr8_2:46637701-46637720 Msa1250890:intron 20.0%
!! TATGTACCTATGTATTTATT+TGG - chr8_2:46637749-46637768 Msa1250890:intron 20.0%
!!! GCCTTAACTTAAATTATTTT+TGG - chr8_2:46635887-46635906 Msa1250890:intron 20.0%
!!! CCCAAAAATAATTTAAGTTA+AGG + chr8_2:46635891-46635910 None:intergenic 20.0%
!! TTATTTATAAATACCATGTC+AGG - chr8_2:46635958-46635977 Msa1250890:intron 20.0%
!! TTCTATAATGAAAAATGAGA+AGG + chr8_2:46636393-46636412 None:intergenic 20.0%
!!! TTAAAGTTTCCTTCTAAAAT+CGG - chr8_2:46636494-46636513 Msa1250890:intron 20.0%
!! ATTATGGGAATAAATTACAT+TGG - chr8_2:46636714-46636733 Msa1250890:intron 20.0%
!!! TTTTTTTATTCAAGGTAACA+AGG + chr8_2:46636949-46636968 None:intergenic 20.0%
!! AACACTCAATAAAAGTAATT+TGG + chr8_2:46637485-46637504 None:intergenic 20.0%
!!! CTCTATTAGAAATAATTTTC+AGG - chr8_2:46637701-46637720 Msa1250890:intron 20.0%
!! TATGTACCTATGTATTTATT+TGG - chr8_2:46637749-46637768 Msa1250890:intron 20.0%
! TTTGAAAAATTTCACTGAGA+AGG + chr8_2:46635583-46635602 None:intergenic 25.0%
!! TTTAAGTTAAGGCTGAATAA+AGG + chr8_2:46635880-46635899 None:intergenic 25.0%
!!! CTTAAATTATTTTTGGGACT+TGG - chr8_2:46635894-46635913 Msa1250890:intron 25.0%
! AAAAGAAAAATAAAACGGGA+AGG + chr8_2:46635926-46635945 None:intergenic 25.0%
! AGTACACAGAAAATTATGTT+AGG + chr8_2:46636051-46636070 None:intergenic 25.0%
! CTGAATTGCATATATGTAAT+TGG - chr8_2:46636152-46636171 Msa1250890:CDS 25.0%
! AATGAACCAAACCTAAATAT+TGG + chr8_2:46636467-46636486 None:intergenic 25.0%
!!! AAATTTTCACCGATTTTAGA+AGG + chr8_2:46636506-46636525 None:intergenic 25.0%
! CAATTATAAAGTCACTGAAA+TGG + chr8_2:46636648-46636667 None:intergenic 25.0%
!! TGAATTTTCTGATTGATGAA+AGG - chr8_2:46636666-46636685 Msa1250890:CDS 25.0%
!! GAATTTTCTGATTGATGAAA+GGG - chr8_2:46636667-46636686 Msa1250890:CDS 25.0%
! TGCACACTTAAATAGATTAT+GGG - chr8_2:46636699-46636718 Msa1250890:intron 25.0%
! AATTACATTGGTGAAAAACA+TGG - chr8_2:46636726-46636745 Msa1250890:intron 25.0%
! ATTACATTGGTGAAAAACAT+GGG - chr8_2:46636727-46636746 Msa1250890:intron 25.0%
! AGAACTCAAGAGTAAAAAAA+AGG + chr8_2:46636865-46636884 None:intergenic 25.0%
! AATATAGGAAAGATGATGTT+TGG - chr8_2:46636995-46637014 Msa1250890:intron 25.0%
! ATATAGGAAAGATGATGTTT+GGG - chr8_2:46636996-46637015 Msa1250890:intron 25.0%
!! TACGATTTGAAACAGATAAT+AGG - chr8_2:46637334-46637353 Msa1250890:intron 25.0%
!!! TTATTGAGTGTTGATTTAAG+AGG - chr8_2:46637493-46637512 Msa1250890:intron 25.0%
!!! AATCACTTTTAATGCAAATC+TGG + chr8_2:46637581-46637600 None:intergenic 25.0%
! AATTCGCCAAATAAATACAT+AGG + chr8_2:46637758-46637777 None:intergenic 25.0%
! TTTGAAAAATTTCACTGAGA+AGG + chr8_2:46635583-46635602 None:intergenic 25.0%
!! TTTAAGTTAAGGCTGAATAA+AGG + chr8_2:46635880-46635899 None:intergenic 25.0%
!!! CTTAAATTATTTTTGGGACT+TGG - chr8_2:46635894-46635913 Msa1250890:intron 25.0%
! AAAAGAAAAATAAAACGGGA+AGG + chr8_2:46635926-46635945 None:intergenic 25.0%
! AGTACACAGAAAATTATGTT+AGG + chr8_2:46636051-46636070 None:intergenic 25.0%
! CTGAATTGCATATATGTAAT+TGG - chr8_2:46636152-46636171 Msa1250890:CDS 25.0%
! AATGAACCAAACCTAAATAT+TGG + chr8_2:46636467-46636486 None:intergenic 25.0%
!!! AAATTTTCACCGATTTTAGA+AGG + chr8_2:46636506-46636525 None:intergenic 25.0%
! CAATTATAAAGTCACTGAAA+TGG + chr8_2:46636648-46636667 None:intergenic 25.0%
!! TGAATTTTCTGATTGATGAA+AGG - chr8_2:46636666-46636685 Msa1250890:CDS 25.0%
!! GAATTTTCTGATTGATGAAA+GGG - chr8_2:46636667-46636686 Msa1250890:CDS 25.0%
! TGCACACTTAAATAGATTAT+GGG - chr8_2:46636699-46636718 Msa1250890:intron 25.0%
! AATTACATTGGTGAAAAACA+TGG - chr8_2:46636726-46636745 Msa1250890:intron 25.0%
! ATTACATTGGTGAAAAACAT+GGG - chr8_2:46636727-46636746 Msa1250890:intron 25.0%
! AGAACTCAAGAGTAAAAAAA+AGG + chr8_2:46636865-46636884 None:intergenic 25.0%
! AATATAGGAAAGATGATGTT+TGG - chr8_2:46636995-46637014 Msa1250890:intron 25.0%
! ATATAGGAAAGATGATGTTT+GGG - chr8_2:46636996-46637015 Msa1250890:intron 25.0%
!! TACGATTTGAAACAGATAAT+AGG - chr8_2:46637334-46637353 Msa1250890:intron 25.0%
!!! TTATTGAGTGTTGATTTAAG+AGG - chr8_2:46637493-46637512 Msa1250890:intron 25.0%
!!! AATCACTTTTAATGCAAATC+TGG + chr8_2:46637581-46637600 None:intergenic 25.0%
! AATTCGCCAAATAAATACAT+AGG + chr8_2:46637758-46637777 None:intergenic 25.0%
! TTCAATCTGTTTCTTCTTCT+TGG - chr8_2:46635675-46635694 Msa1250890:three_prime_UTR 30.0%
TTTCTTCTTCTTGGATAACT+AGG - chr8_2:46635684-46635703 Msa1250890:three_prime_UTR 30.0%
TAGCAAATTAATCAGACACT+TGG - chr8_2:46635722-46635741 Msa1250890:three_prime_UTR 30.0%
AACTGTGCATAGTATTACAA+GGG + chr8_2:46635793-46635812 None:intergenic 30.0%
TCTCTCTTATGTCTGAAAAA+TGG - chr8_2:46635841-46635860 Msa1250890:intron 30.0%
ATGCATGAAGGAATAATATG+AGG + chr8_2:46636110-46636129 None:intergenic 30.0%
! CATGATTTTTGAATGCATGA+AGG + chr8_2:46636122-46636141 None:intergenic 30.0%
ATATGCAATTCAGAAAGCTT+AGG + chr8_2:46636145-46636164 None:intergenic 30.0%
ATAAGAAGAAAGTCCTTCTT+GGG - chr8_2:46636570-46636589 Msa1250890:intron 30.0%
CTGCACACTTAAATAGATTA+TGG - chr8_2:46636698-46636717 Msa1250890:intron 30.0%
!!! TGCTTTGCTTTTTGCAATAT+AGG - chr8_2:46636980-46636999 Msa1250890:intron 30.0%
!! TCTACATTTGTTTCTCCTTT+TGG + chr8_2:46637063-46637082 None:intergenic 30.0%
ATGCACATTAAACTTACCTT+TGG + chr8_2:46637176-46637195 None:intergenic 30.0%
TGCAAACAATTGATTACAGA+AGG + chr8_2:46637202-46637221 None:intergenic 30.0%
TTTACCCTAAAATTTACTGC+AGG - chr8_2:46637390-46637409 Msa1250890:intron 30.0%
! AACTCCTGCAGTAAATTTTA+GGG + chr8_2:46637397-46637416 None:intergenic 30.0%
! AAACTCCTGCAGTAAATTTT+AGG + chr8_2:46637398-46637417 None:intergenic 30.0%
! TTCAATCTGTTTCTTCTTCT+TGG - chr8_2:46635675-46635694 Msa1250890:three_prime_UTR 30.0%
TTTCTTCTTCTTGGATAACT+AGG - chr8_2:46635684-46635703 Msa1250890:three_prime_UTR 30.0%
TAGCAAATTAATCAGACACT+TGG - chr8_2:46635722-46635741 Msa1250890:three_prime_UTR 30.0%
AACTGTGCATAGTATTACAA+GGG + chr8_2:46635793-46635812 None:intergenic 30.0%
TCTCTCTTATGTCTGAAAAA+TGG - chr8_2:46635841-46635860 Msa1250890:intron 30.0%
ATGCATGAAGGAATAATATG+AGG + chr8_2:46636110-46636129 None:intergenic 30.0%
! CATGATTTTTGAATGCATGA+AGG + chr8_2:46636122-46636141 None:intergenic 30.0%
ATATGCAATTCAGAAAGCTT+AGG + chr8_2:46636145-46636164 None:intergenic 30.0%
ATAAGAAGAAAGTCCTTCTT+GGG - chr8_2:46636570-46636589 Msa1250890:intron 30.0%
CTGCACACTTAAATAGATTA+TGG - chr8_2:46636698-46636717 Msa1250890:intron 30.0%
!!! TGCTTTGCTTTTTGCAATAT+AGG - chr8_2:46636980-46636999 Msa1250890:intron 30.0%
!! TCTACATTTGTTTCTCCTTT+TGG + chr8_2:46637063-46637082 None:intergenic 30.0%
ATGCACATTAAACTTACCTT+TGG + chr8_2:46637176-46637195 None:intergenic 30.0%
TGCAAACAATTGATTACAGA+AGG + chr8_2:46637202-46637221 None:intergenic 30.0%
TTTACCCTAAAATTTACTGC+AGG - chr8_2:46637390-46637409 Msa1250890:intron 30.0%
! AACTCCTGCAGTAAATTTTA+GGG + chr8_2:46637397-46637416 None:intergenic 30.0%
! AAACTCCTGCAGTAAATTTT+AGG + chr8_2:46637398-46637417 None:intergenic 30.0%
TTCCCTTTCCTTAAAGAAGA+GGG + chr8_2:46635454-46635473 None:intergenic 35.0%
ATTCCCTTTCCTTAAAGAAG+AGG + chr8_2:46635455-46635474 None:intergenic 35.0%
CTCATACTTAAACTAACTGC+AGG + chr8_2:46635498-46635517 None:intergenic 35.0%
! CTGCAGTTAGTTTAAGTATG+AGG - chr8_2:46635496-46635515 Msa1250890:three_prime_UTR 35.0%
ATTTCACTGAGAAGGATCAT+CGG + chr8_2:46635575-46635594 None:intergenic 35.0%
CAACTGTGCATAGTATTACA+AGG + chr8_2:46635794-46635813 None:intergenic 35.0%
TTTCAGACATAAGAGAGAAG+AGG + chr8_2:46635839-46635858 None:intergenic 35.0%
AAGTTAAGGCTGAATAAAGG+AGG + chr8_2:46635877-46635896 None:intergenic 35.0%
AGAAAAATAAAACGGGAAGG+AGG + chr8_2:46635923-46635942 None:intergenic 35.0%
GTTTCATCATAAACCTGACA+TGG + chr8_2:46635974-46635993 None:intergenic 35.0%
TCTAGCTATGTCATTGCTAA+TGG + chr8_2:46635996-46636015 None:intergenic 35.0%
GATTGTGAGATTGCACTTAT+AGG - chr8_2:46636179-46636198 Msa1250890:CDS 35.0%
TTGCTTACAGTGAGACTATT+TGG - chr8_2:46636334-46636353 Msa1250890:intron 35.0%
TCAATGCAGAGCCAATATTT+AGG - chr8_2:46636453-46636472 Msa1250890:intron 35.0%
GATAAGAAGAAAGTCCTTCT+TGG - chr8_2:46636569-46636588 Msa1250890:intron 35.0%
TCACCTACTTTCTGGATATT+CGG - chr8_2:46637023-46637042 Msa1250890:intron 35.0%
GGAGAAACAAATGTAGAGAT+TGG - chr8_2:46637066-46637085 Msa1250890:intron 35.0%
GAAACAAATGTAGAGATTGG+AGG - chr8_2:46637069-46637088 Msa1250890:intron 35.0%
AATTTACTGCAGGAGTTTCA+AGG - chr8_2:46637400-46637419 Msa1250890:intron 35.0%
ATTTACTGCAGGAGTTTCAA+GGG - chr8_2:46637401-46637420 Msa1250890:intron 35.0%
GCGGAGCAGAATATTAAAAT+TGG - chr8_2:46637455-46637474 Msa1250890:intron 35.0%
!! TAATTTTCAGGCGCTTTAGA+AGG - chr8_2:46637713-46637732 Msa1250890:intron 35.0%
TTCCCTTTCCTTAAAGAAGA+GGG + chr8_2:46635454-46635473 None:intergenic 35.0%
ATTCCCTTTCCTTAAAGAAG+AGG + chr8_2:46635455-46635474 None:intergenic 35.0%
CTCATACTTAAACTAACTGC+AGG + chr8_2:46635498-46635517 None:intergenic 35.0%
! CTGCAGTTAGTTTAAGTATG+AGG - chr8_2:46635496-46635515 Msa1250890:three_prime_UTR 35.0%
ATTTCACTGAGAAGGATCAT+CGG + chr8_2:46635575-46635594 None:intergenic 35.0%
CAACTGTGCATAGTATTACA+AGG + chr8_2:46635794-46635813 None:intergenic 35.0%
TTTCAGACATAAGAGAGAAG+AGG + chr8_2:46635839-46635858 None:intergenic 35.0%
AAGTTAAGGCTGAATAAAGG+AGG + chr8_2:46635877-46635896 None:intergenic 35.0%
AGAAAAATAAAACGGGAAGG+AGG + chr8_2:46635923-46635942 None:intergenic 35.0%
GTTTCATCATAAACCTGACA+TGG + chr8_2:46635974-46635993 None:intergenic 35.0%
TCTAGCTATGTCATTGCTAA+TGG + chr8_2:46635996-46636015 None:intergenic 35.0%
GATTGTGAGATTGCACTTAT+AGG - chr8_2:46636179-46636198 Msa1250890:CDS 35.0%
TTGCTTACAGTGAGACTATT+TGG - chr8_2:46636334-46636353 Msa1250890:intron 35.0%
TCAATGCAGAGCCAATATTT+AGG - chr8_2:46636453-46636472 Msa1250890:intron 35.0%
GATAAGAAGAAAGTCCTTCT+TGG - chr8_2:46636569-46636588 Msa1250890:intron 35.0%
TCACCTACTTTCTGGATATT+CGG - chr8_2:46637023-46637042 Msa1250890:intron 35.0%
GGAGAAACAAATGTAGAGAT+TGG - chr8_2:46637066-46637085 Msa1250890:intron 35.0%
GAAACAAATGTAGAGATTGG+AGG - chr8_2:46637069-46637088 Msa1250890:intron 35.0%
AATTTACTGCAGGAGTTTCA+AGG - chr8_2:46637400-46637419 Msa1250890:intron 35.0%
ATTTACTGCAGGAGTTTCAA+GGG - chr8_2:46637401-46637420 Msa1250890:intron 35.0%
GCGGAGCAGAATATTAAAAT+TGG - chr8_2:46637455-46637474 Msa1250890:intron 35.0%
!! TAATTTTCAGGCGCTTTAGA+AGG - chr8_2:46637713-46637732 Msa1250890:intron 35.0%
TCTCTTCTCCCTCTTCTTTA+AGG - chr8_2:46635443-46635462 Msa1250890:three_prime_UTR 40.0%
! TCTCCCTCTTCTTTAAGGAA+AGG - chr8_2:46635448-46635467 Msa1250890:three_prime_UTR 40.0%
! CTCCCTCTTCTTTAAGGAAA+GGG - chr8_2:46635449-46635468 Msa1250890:three_prime_UTR 40.0%
ACTAACTGCAGGATTTCAGA+AGG + chr8_2:46635487-46635506 None:intergenic 40.0%
TTAAGTATGAGGCTCACACT+CGG - chr8_2:46635507-46635526 Msa1250890:three_prime_UTR 40.0%
! TCGGCTTGCATGAAAATTCA+GGG + chr8_2:46635556-46635575 None:intergenic 40.0%
!! ATCGGCTTGCATGAAAATTC+AGG + chr8_2:46635557-46635576 None:intergenic 40.0%
TTTCAAACAGCTCTCTTCAC+AGG - chr8_2:46635596-46635615 Msa1250890:three_prime_UTR 40.0%
TGAAGAATTGCTTCCTTGCT+AGG - chr8_2:46635745-46635764 Msa1250890:exon 40.0%
AAGAGAGAAGAGGTTTGCAA+TGG + chr8_2:46635829-46635848 None:intergenic 40.0%
GTTGTGAACTTGTGATTGAC+TGG - chr8_2:46636076-46636095 Msa1250890:CDS 40.0%
!! AATGTCCCTTTTGAGCATTG+AGG - chr8_2:46636367-46636386 Msa1250890:intron 40.0%
! GCAGAGCCAATATTTAGGTT+TGG - chr8_2:46636458-46636477 Msa1250890:intron 40.0%
AAGAAAGTCCTTCTTGGGAT+AGG - chr8_2:46636575-46636594 Msa1250890:intron 40.0%
CTCCACTGGAATGAAGATAA+AGG - chr8_2:46636757-46636776 Msa1250890:intron 40.0%
CACCTTTATCTTCATTCCAG+TGG + chr8_2:46636762-46636781 None:intergenic 40.0%
CACTGGAATGAAGATAAAGG+TGG - chr8_2:46636760-46636779 Msa1250890:intron 40.0%
AGGAAAGATGATGTTTGGGT+TGG - chr8_2:46637000-46637019 Msa1250890:intron 40.0%
! TCTCCTTTTGGATCTTCCAT+TGG + chr8_2:46637051-46637070 None:intergenic 40.0%
ATGTAGAGATTGGAGGAACT+TGG - chr8_2:46637076-46637095 Msa1250890:intron 40.0%
GTCTATAAAAGCTGCATACG+AGG - chr8_2:46637104-46637123 Msa1250890:intron 40.0%
!! GCAACTAAATCTGCTTTTCC+TGG - chr8_2:46637126-46637145 Msa1250890:intron 40.0%
!! ACTAAATCTGCTTTTCCTGG+TGG - chr8_2:46637129-46637148 Msa1250890:intron 40.0%
TTATTGCGCATCTTGACCAA+AGG - chr8_2:46637157-46637176 Msa1250890:intron 40.0%
! TTTTAATATTCTGCTCCGCG+AGG + chr8_2:46637454-46637473 None:intergenic 40.0%
AATGTGCAGATTGCAGACAT+AGG - chr8_2:46637534-46637553 Msa1250890:intron 40.0%
TCTCTTCTCCCTCTTCTTTA+AGG - chr8_2:46635443-46635462 Msa1250890:three_prime_UTR 40.0%
! TCTCCCTCTTCTTTAAGGAA+AGG - chr8_2:46635448-46635467 Msa1250890:three_prime_UTR 40.0%
! CTCCCTCTTCTTTAAGGAAA+GGG - chr8_2:46635449-46635468 Msa1250890:three_prime_UTR 40.0%
ACTAACTGCAGGATTTCAGA+AGG + chr8_2:46635487-46635506 None:intergenic 40.0%
TTAAGTATGAGGCTCACACT+CGG - chr8_2:46635507-46635526 Msa1250890:three_prime_UTR 40.0%
! TCGGCTTGCATGAAAATTCA+GGG + chr8_2:46635556-46635575 None:intergenic 40.0%
!! ATCGGCTTGCATGAAAATTC+AGG + chr8_2:46635557-46635576 None:intergenic 40.0%
TTTCAAACAGCTCTCTTCAC+AGG - chr8_2:46635596-46635615 Msa1250890:three_prime_UTR 40.0%
TGAAGAATTGCTTCCTTGCT+AGG - chr8_2:46635745-46635764 Msa1250890:exon 40.0%
AAGAGAGAAGAGGTTTGCAA+TGG + chr8_2:46635829-46635848 None:intergenic 40.0%
GTTGTGAACTTGTGATTGAC+TGG - chr8_2:46636076-46636095 Msa1250890:CDS 40.0%
!! AATGTCCCTTTTGAGCATTG+AGG - chr8_2:46636367-46636386 Msa1250890:intron 40.0%
! GCAGAGCCAATATTTAGGTT+TGG - chr8_2:46636458-46636477 Msa1250890:intron 40.0%
AAGAAAGTCCTTCTTGGGAT+AGG - chr8_2:46636575-46636594 Msa1250890:intron 40.0%
CTCCACTGGAATGAAGATAA+AGG - chr8_2:46636757-46636776 Msa1250890:intron 40.0%
CACCTTTATCTTCATTCCAG+TGG + chr8_2:46636762-46636781 None:intergenic 40.0%
CACTGGAATGAAGATAAAGG+TGG - chr8_2:46636760-46636779 Msa1250890:intron 40.0%
AGGAAAGATGATGTTTGGGT+TGG - chr8_2:46637000-46637019 Msa1250890:intron 40.0%
! TCTCCTTTTGGATCTTCCAT+TGG + chr8_2:46637051-46637070 None:intergenic 40.0%
ATGTAGAGATTGGAGGAACT+TGG - chr8_2:46637076-46637095 Msa1250890:intron 40.0%
GTCTATAAAAGCTGCATACG+AGG - chr8_2:46637104-46637123 Msa1250890:intron 40.0%
!! GCAACTAAATCTGCTTTTCC+TGG - chr8_2:46637126-46637145 Msa1250890:intron 40.0%
!! ACTAAATCTGCTTTTCCTGG+TGG - chr8_2:46637129-46637148 Msa1250890:intron 40.0%
TTATTGCGCATCTTGACCAA+AGG - chr8_2:46637157-46637176 Msa1250890:intron 40.0%
! TTTTAATATTCTGCTCCGCG+AGG + chr8_2:46637454-46637473 None:intergenic 40.0%
AATGTGCAGATTGCAGACAT+AGG - chr8_2:46637534-46637553 Msa1250890:intron 40.0%
CGGCTTGCATGAAAATTCAG+GGG + chr8_2:46635555-46635574 None:intergenic 45.0%
GTAGCAGAAGCAGAAACAGA+AGG + chr8_2:46635655-46635674 None:intergenic 45.0%
ACATACAGAGTCACCTAGCA+AGG + chr8_2:46635761-46635780 None:intergenic 45.0%
GAAGGCCTCAATGCTCAAAA+GGG + chr8_2:46636375-46636394 None:intergenic 45.0%
AGAAGGCCTCAATGCTCAAA+AGG + chr8_2:46636376-46636395 None:intergenic 45.0%
ATTCTCACACTCTTCCTGCA+GGG - chr8_2:46636541-46636560 Msa1250890:intron 45.0%
CTTCTTATCATTCTCCCTGC+AGG + chr8_2:46636558-46636577 None:intergenic 45.0%
AAAGTCCTTCTTGGGATAGG+CGG - chr8_2:46636578-46636597 Msa1250890:intron 45.0%
ACATTATGTGCCTCGGCATA+TGG - chr8_2:46636604-46636623 Msa1250890:intron 45.0%
AACACTACATCCATATGCCG+AGG + chr8_2:46636617-46636636 None:intergenic 45.0%
ACATGGGAGTTAAACTCCAC+TGG - chr8_2:46636743-46636762 Msa1250890:intron 45.0%
GCACCGAATATCCAGAAAGT+AGG + chr8_2:46637029-46637048 None:intergenic 45.0%
!! TTCTGGATATTCGGTGCCAA+TGG - chr8_2:46637032-46637051 Msa1250890:intron 45.0%
GTGCCAATGGAAGATCCAAA+AGG - chr8_2:46637045-46637064 Msa1250890:intron 45.0%
CGGCTTGCATGAAAATTCAG+GGG + chr8_2:46635555-46635574 None:intergenic 45.0%
GTAGCAGAAGCAGAAACAGA+AGG + chr8_2:46635655-46635674 None:intergenic 45.0%
ACATACAGAGTCACCTAGCA+AGG + chr8_2:46635761-46635780 None:intergenic 45.0%
GAAGGCCTCAATGCTCAAAA+GGG + chr8_2:46636375-46636394 None:intergenic 45.0%
AGAAGGCCTCAATGCTCAAA+AGG + chr8_2:46636376-46636395 None:intergenic 45.0%
ATTCTCACACTCTTCCTGCA+GGG - chr8_2:46636541-46636560 Msa1250890:intron 45.0%
CTTCTTATCATTCTCCCTGC+AGG + chr8_2:46636558-46636577 None:intergenic 45.0%
AAAGTCCTTCTTGGGATAGG+CGG - chr8_2:46636578-46636597 Msa1250890:intron 45.0%
ACATTATGTGCCTCGGCATA+TGG - chr8_2:46636604-46636623 Msa1250890:intron 45.0%
AACACTACATCCATATGCCG+AGG + chr8_2:46636617-46636636 None:intergenic 45.0%
ACATGGGAGTTAAACTCCAC+TGG - chr8_2:46636743-46636762 Msa1250890:intron 45.0%
GCACCGAATATCCAGAAAGT+AGG + chr8_2:46637029-46637048 None:intergenic 45.0%
!! TTCTGGATATTCGGTGCCAA+TGG - chr8_2:46637032-46637051 Msa1250890:intron 45.0%
GTGCCAATGGAAGATCCAAA+AGG - chr8_2:46637045-46637064 Msa1250890:intron 45.0%
!! TATAAAAAAGAAAAATAAAA+CGG + chr8_2:46635931-46635950 None:intergenic 5.0%
!! TATAAAAAAGAAAAATAAAA+CGG + chr8_2:46635931-46635950 None:intergenic 5.0%
GATTCTCACACTCTTCCTGC+AGG - chr8_2:46636540-46636559 Msa1250890:intron 50.0%
!! TGGGTTGGTCACCTACTTTC+TGG - chr8_2:46637015-46637034 Msa1250890:intron 50.0%
TGCGCAATAATTTCGCCACC+AGG + chr8_2:46637147-46637166 None:intergenic 50.0%
TGGCAGAAGAATGCCATCAC+AGG - chr8_2:46637425-46637444 Msa1250890:intron 50.0%
GATTCTCACACTCTTCCTGC+AGG - chr8_2:46636540-46636559 Msa1250890:intron 50.0%
!! TGGGTTGGTCACCTACTTTC+TGG - chr8_2:46637015-46637034 Msa1250890:intron 50.0%
TGCGCAATAATTTCGCCACC+AGG + chr8_2:46637147-46637166 None:intergenic 50.0%
TGGCAGAAGAATGCCATCAC+AGG - chr8_2:46637425-46637444 Msa1250890:intron 50.0%
GTATGAGGCTCACACTCGGA+AGG - chr8_2:46635511-46635530 Msa1250890:three_prime_UTR 55.0%
GCGGTGGACATTATGTGCCT+CGG - chr8_2:46636597-46636616 Msa1250890:intron 55.0%
ACTGCAGGAGTTTCAAGGGC+TGG - chr8_2:46637405-46637424 Msa1250890:intron 55.0%
TGCCATCACAGGATTCCTCG+CGG - chr8_2:46637436-46637455 Msa1250890:intron 55.0%
GTATGAGGCTCACACTCGGA+AGG - chr8_2:46635511-46635530 Msa1250890:three_prime_UTR 55.0%
GCGGTGGACATTATGTGCCT+CGG - chr8_2:46636597-46636616 Msa1250890:intron 55.0%
ACTGCAGGAGTTTCAAGGGC+TGG - chr8_2:46637405-46637424 Msa1250890:intron 55.0%
TGCCATCACAGGATTCCTCG+CGG - chr8_2:46637436-46637455 Msa1250890:intron 55.0%
GCTCTCTTCACAGGTGCGCA+CGG - chr8_2:46635605-46635624 Msa1250890:three_prime_UTR 60.0%
GTCCTTCTTGGGATAGGCGG+TGG - chr8_2:46636581-46636600 Msa1250890:intron 60.0%
GTCCACCGCCTATCCCAAGA+AGG + chr8_2:46636586-46636605 None:intergenic 60.0%
CTCCGCGAGGAATCCTGTGA+TGG + chr8_2:46637441-46637460 None:intergenic 60.0%
GCTCTCTTCACAGGTGCGCA+CGG - chr8_2:46635605-46635624 Msa1250890:three_prime_UTR 60.0%
GTCCTTCTTGGGATAGGCGG+TGG - chr8_2:46636581-46636600 Msa1250890:intron 60.0%
GTCCACCGCCTATCCCAAGA+AGG + chr8_2:46636586-46636605 None:intergenic 60.0%
CTCCGCGAGGAATCCTGTGA+TGG + chr8_2:46637441-46637460 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 46635430 46637822 46635430 ID=Msa1250890;Name=Msa1250890
chr8_2 mRNA 46635430 46637822 46635430 ID=Msa1250890-mRNA-1;Parent=Msa1250890;Name=Msa1250890-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0.66|0.75|1|1|1|4|323|136
chr8_2 exon 46635430 46635840 46635430 ID=Msa1250890-mRNA-1:exon:14153;Parent=Msa1250890-mRNA-1
chr8_2 exon 46636074 46636250 46636074 ID=Msa1250890-mRNA-1:exon:14152;Parent=Msa1250890-mRNA-1
chr8_2 exon 46636616 46636690 46636616 ID=Msa1250890-mRNA-1:exon:14151;Parent=Msa1250890-mRNA-1
chr8_2 exon 46637752 46637822 46637752 ID=Msa1250890-mRNA-1:exon:14150;Parent=Msa1250890-mRNA-1
chr8_2 CDS 46637752 46637822 46637752 ID=Msa1250890-mRNA-1:cds;Parent=Msa1250890-mRNA-1
chr8_2 CDS 46636616 46636690 46636616 ID=Msa1250890-mRNA-1:cds;Parent=Msa1250890-mRNA-1
chr8_2 CDS 46636074 46636250 46636074 ID=Msa1250890-mRNA-1:cds;Parent=Msa1250890-mRNA-1
chr8_2 CDS 46635753 46635840 46635753 ID=Msa1250890-mRNA-1:cds;Parent=Msa1250890-mRNA-1
chr8_2 three_prime_UTR 46635430 46635752 46635430 ID=Msa1250890-mRNA-1:three_prime_utr;Parent=Msa1250890-mRNA-1
Gene Sequence

>Msa1250890

ATGGTGAGGCTTCTCTCTTCTCCCTCTTCTTTAAGGAAAGGGAATCTGAGTTTTCCTTCTGAAATCCTGCAGGAGAATGATAAGAAGAAAGTCCTTCTTGGGATAGGCGGTGGACATTATGTGCCTCGGCATATGGATGTAGTGTTGAAAGATGATGTTTGGGTTGGTCACCTACTTTCTGGATATTCGGTGCCAATGGAAGATCCAAAAGGAGAAACAAATGTAGAGATTGGAGGAACTTGGAAACAGTCTATAAAAGCTGCATACGAGGCAACTAAATCTGCTTTTCCTGGTGGCGAAATTATTGCGCATCTTGACCAAAGGAGTTTCAAGGGCTGGCAGAAGAATGCCATCACAGGATTCCTCGCGGAGCAGAATATTAAAATTGGAAAGCCAAATTACTTTTATTGA

Protein sequence

>Msa1250890

MVRLLSSPSSLRKGNLSFPSEILQENDKKKVLLGIGGGHYVPRHMDVVLKDDVWVGHLLSGYSVPMEDPKGETNVEIGGTWKQSIKAAYEATKSAFPGGEIIAHLDQRSFKGWQKNAITGFLAEQNIKIGKPNYFY*