Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828200 | XP_003597464.1 | 92.946 | 482 | 4 | 1 | 1 | 452 | 1 | 482 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828200 | G7IUF0 | 92.946 | 482 | 4 | 1 | 1 | 452 | 1 | 482 | 0.0 | 909 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011050 | Msa0828200 | 0.814407 | 1.565153e-51 | -8.615850e-47 |
| Msa0015090 | Msa0828200 | 0.801973 | 6.992671e-49 | -8.615850e-47 |
| Msa0026630 | Msa0828200 | 0.868309 | 7.185998e-66 | -8.615850e-47 |
| Msa0048390 | Msa0828200 | 0.821292 | 4.364068e-53 | -8.615850e-47 |
| Msa0051960 | Msa0828200 | 0.803798 | 2.934826e-49 | -8.615850e-47 |
| Msa0094710 | Msa0828200 | 0.814847 | 1.250506e-51 | -8.615850e-47 |
| Msa0101960 | Msa0828200 | 0.810849 | 9.393103e-51 | -8.615850e-47 |
| Msa0631320 | Msa0828200 | 0.806468 | 8.105782e-50 | -8.615850e-47 |
| Msa0641130 | Msa0828200 | 0.833290 | 5.807097e-56 | -8.615850e-47 |
| Msa0679670 | Msa0828200 | 0.812572 | 3.963984e-51 | -8.615850e-47 |
| Msa0734940 | Msa0828200 | 0.857696 | 1.368482e-62 | -8.615850e-47 |
| Msa0745250 | Msa0828200 | -0.810078 | 1.378511e-50 | -8.615850e-47 |
| Msa0771950 | Msa0828200 | 0.807343 | 5.295027e-50 | -8.615850e-47 |
| Msa0775560 | Msa0828200 | 0.804107 | 2.532030e-49 | -8.615850e-47 |
| Msa0812950 | Msa0828200 | 0.825787 | 3.875531e-54 | -8.615850e-47 |
| Msa0823540 | Msa0828200 | 0.812578 | 3.950581e-51 | -8.615850e-47 |
| Msa0828200 | Msa0862620 | 0.805296 | 1.429866e-49 | -8.615850e-47 |
| Msa0828200 | Msa0863720 | 0.818302 | 2.104135e-52 | -8.615850e-47 |
| Msa0828200 | Msa0921420 | 0.805430 | 1.339749e-49 | -8.615850e-47 |
| Msa0828200 | Msa1011250 | 0.815909 | 7.260318e-52 | -8.615850e-47 |
| Msa0828200 | Msa1023310 | 0.812401 | 4.318811e-51 | -8.615850e-47 |
| Msa0828200 | Msa1062040 | 0.819539 | 1.101165e-52 | -8.615850e-47 |
| Msa0828200 | Msa1070540 | 0.812214 | 4.744002e-51 | -8.615850e-47 |
| Msa0828200 | Msa1101240 | 0.810673 | 1.025531e-50 | -8.615850e-47 |
| Msa0828200 | Msa1107200 | 0.839288 | 1.733660e-57 | -8.615850e-47 |
| Msa0828200 | Msa1150780 | 0.817337 | 3.474629e-52 | -8.615850e-47 |
| Msa0828200 | Msa1171140 | 0.819920 | 9.012411e-53 | -8.615850e-47 |
| Msa0828200 | Msa1180720 | 0.830214 | 3.331428e-55 | -8.615850e-47 |
| Msa0828200 | Msa1183140 | 0.816375 | 5.711954e-52 | -8.615850e-47 |
| Msa0828200 | Msa1208370 | 0.811391 | 7.166377e-51 | -8.615850e-47 |
| Msa0828200 | Msa1208990 | 0.818024 | 2.432627e-52 | -8.615850e-47 |
| Msa0828200 | Msa1212050 | 0.801514 | 8.685001e-49 | -8.615850e-47 |
| Msa0828200 | Msa1214170 | 0.816540 | 5.246837e-52 | -8.615850e-47 |
| Msa0828200 | Msa1229480 | 0.809107 | 2.227731e-50 | -8.615850e-47 |
| Msa0828200 | Msa1231710 | 0.831175 | 1.937509e-55 | -8.615850e-47 |
| Msa0828200 | Msa1232920 | 0.823267 | 1.518815e-53 | -8.615850e-47 |
| Msa0828200 | Msa1236440 | 0.806852 | 6.725571e-50 | -8.615850e-47 |
| Msa0828200 | Msa1239400 | 0.803568 | 3.276980e-49 | -8.615850e-47 |
| Msa0828200 | Msa1259860 | 0.814450 | 1.531548e-51 | -8.615850e-47 |
| Msa0828200 | Msa1260680 | 0.830922 | 2.235611e-55 | -8.615850e-47 |
| Msa0828200 | Msa1272010 | 0.801909 | 7.207808e-49 | -8.615850e-47 |
| Msa0828200 | Msa1275510 | 0.845200 | 4.709895e-59 | -8.615850e-47 |
| Msa0828200 | Msa1277670 | 0.802061 | 6.706886e-49 | -8.615850e-47 |
| Msa0828200 | Msa1286210 | 0.806235 | 9.077740e-50 | -8.615850e-47 |
| Msa0828200 | Msa1309760 | 0.823237 | 1.543562e-53 | -8.615850e-47 |
| Msa0828200 | Msa1312440 | 0.864576 | 1.101253e-64 | -8.615850e-47 |
| Msa0828200 | Msa1360020 | 0.814013 | 1.911851e-51 | -8.615850e-47 |
| Msa0828200 | Msa1368610 | 0.806539 | 7.831665e-50 | -8.615850e-47 |
| Msa0828200 | Msa1369920 | -0.841933 | 3.517606e-58 | -8.615850e-47 |
| Msa0828200 | Msa1407880 | 0.801086 | 1.062848e-48 | -8.615850e-47 |
| Msa0828200 | Msa1423540 | 0.814900 | 1.217187e-51 | -8.615850e-47 |
| Msa0828200 | Msa1430130 | 0.800266 | 1.562354e-48 | -8.615850e-47 |
| Msa0828200 | Msa1460750 | 0.800576 | 1.350626e-48 | -8.615850e-47 |
| Msa0151220 | Msa0828200 | 0.801857 | 7.386569e-49 | -8.615850e-47 |
| Msa0152560 | Msa0828200 | 0.800264 | 1.563533e-48 | -8.615850e-47 |
| Msa0176260 | Msa0828200 | 0.820664 | 6.086533e-53 | -8.615850e-47 |
| Msa0222980 | Msa0828200 | 0.803213 | 3.880510e-49 | -8.615850e-47 |
| Msa0227360 | Msa0828200 | 0.975313 | 1.003017e-139 | -8.615850e-47 |
| Msa0364790 | Msa0828200 | 0.846161 | 2.584800e-59 | -8.615850e-47 |
| Msa0365950 | Msa0828200 | 0.820730 | 5.876818e-53 | -8.615850e-47 |
| Msa0388730 | Msa0828200 | 0.800071 | 1.711404e-48 | -8.615850e-47 |
| Msa0403470 | Msa0828200 | -0.801244 | 9.867107e-49 | -8.615850e-47 |
| Msa0412260 | Msa0828200 | 0.817015 | 4.104390e-52 | -8.615850e-47 |
| Msa0428200 | Msa0828200 | 0.806166 | 9.386023e-50 | -8.615850e-47 |
| Msa0431900 | Msa0828200 | 0.804810 | 1.806675e-49 | -8.615850e-47 |
| Msa0448610 | Msa0828200 | 0.804783 | 1.830387e-49 | -8.615850e-47 |
| Msa0456770 | Msa0828200 | 0.831311 | 1.793984e-55 | -8.615850e-47 |
| Msa0457990 | Msa0828200 | 0.807204 | 5.665672e-50 | -8.615850e-47 |
| Msa0240270 | Msa0828200 | 0.812050 | 5.151583e-51 | -8.615850e-47 |
| Msa0265270 | Msa0828200 | 0.800802 | 1.214913e-48 | -8.615850e-47 |
| Msa0265940 | Msa0828200 | 0.817696 | 2.885021e-52 | -8.615850e-47 |
| Msa0276430 | Msa0828200 | 0.815974 | 7.020048e-52 | -8.615850e-47 |
| Msa0302840 | Msa0828200 | 0.981519 | 8.709422e-153 | -8.615850e-47 |
| Msa0496970 | Msa0828200 | 0.821728 | 3.459342e-53 | -8.615850e-47 |
| Msa0518170 | Msa0828200 | 0.806154 | 9.438902e-50 | -8.615850e-47 |
| Msa0520770 | Msa0828200 | 0.805481 | 1.307690e-49 | -8.615850e-47 |
| Msa0534870 | Msa0828200 | 0.807098 | 5.967590e-50 | -8.615850e-47 |
| Msa0545050 | Msa0828200 | 0.837883 | 3.994961e-57 | -8.615850e-47 |
| Msa0573890 | Msa0828200 | 0.809682 | 1.677413e-50 | -8.615850e-47 |
| Msa0584600 | Msa0828200 | 0.807486 | 4.937244e-50 | -8.615850e-47 |
| Msa0600590 | Msa0828200 | 0.834123 | 3.594306e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828200 | MtrunA17_Chr2g0329071 | 92.946 | 482 | 4 | 1 | 1 | 452 | 1 | 482 | 0.0 | 909 |
| Msa0828200 | MtrunA17_Chr4g0033031 | 70.190 | 473 | 102 | 7 | 16 | 452 | 20 | 489 | 0.0 | 662 |
| Msa0828200 | MtrunA17_Chr3g0136071 | 31.401 | 207 | 119 | 7 | 32 | 232 | 19 | 208 | 6.94e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0828200 | AT4G12070.1 | 57.085 | 494 | 151 | 9 | 3 | 449 | 1 | 480 | 0.0 | 531 |
Find 115 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGAAAGTTACTTGAATT+TGG | 0.144686 | 5_4:-506157 | None:intergenic |
| AACAGACACTTGTAGATTAT+TGG | 0.210823 | 5_4:+507027 | Msa0828200:CDS |
| CATTCGATTGATAAAACTTT+TGG | 0.214288 | 5_4:-503632 | None:intergenic |
| AAGAGGAATTTGACACAATA+TGG | 0.226321 | 5_4:-503406 | None:intergenic |
| TTGTTCGAGCAGTTCGTTTA+TGG | 0.226809 | 5_4:+506664 | Msa0828200:CDS |
| TTCTCCTCCATGTCTTCCTT+TGG | 0.249282 | 5_4:+507176 | Msa0828200:CDS |
| AGATGGGACCATATAATTAT+TGG | 0.258835 | 5_4:-507739 | None:intergenic |
| CATGATCATGTTTCACTTTG+AGG | 0.290172 | 5_4:-503567 | None:intergenic |
| AATGTACCTGCTACACGTTC+AGG | 0.296544 | 5_4:+506980 | Msa0828200:CDS |
| ATTAATGCAGGTCAAGCTTC+TGG | 0.299561 | 5_4:+506265 | Msa0828200:CDS |
| TTTATATTCCAATAATTATA+TGG | 0.303248 | 5_4:+507731 | Msa0828200:three_prime_UTR |
| TGCTACTCTATCTGAAGCTT+TGG | 0.315662 | 5_4:-506194 | None:intergenic |
| TCTCCTCCATGTCTTCCTTT+GGG | 0.323310 | 5_4:+507177 | Msa0828200:CDS |
| TTGCCATCTGAAGTTCAAAT+TGG | 0.332426 | 5_4:+507271 | Msa0828200:CDS |
| TACTGTCCATTCATCTGCTT+TGG | 0.339181 | 5_4:-503669 | None:intergenic |
| CTTTGAAAGGTGAATTATAT+CGG | 0.339532 | 5_4:-503757 | None:intergenic |
| ATTTCTCTCTCTCTAGCAAC+TGG | 0.355297 | 5_4:+507425 | Msa0828200:CDS |
| GCTACTCTATCTGAAGCTTT+GGG | 0.356630 | 5_4:-506193 | None:intergenic |
| TTCTTCCCCGACGCATCATT+CGG | 0.367188 | 5_4:-503899 | None:intergenic |
| AGGAAGACATGGAGGAGAAT+TGG | 0.368027 | 5_4:-507172 | None:intergenic |
| AGAATCTAGAGATTAGTAAA+TGG | 0.384164 | 5_4:-503284 | None:intergenic |
| GTTGAATGCTTTGAGATTCA+AGG | 0.399457 | 5_4:+503986 | Msa0828200:CDS |
| TACAAAGAACAACAAAATAA+TGG | 0.399644 | 5_4:-507576 | None:intergenic |
| TGGATGTTCATGAAGACAAT+AGG | 0.400118 | 5_4:-506292 | None:intergenic |
| TCGAAGAGGCTCCGATGAAT+TGG | 0.407623 | 5_4:+503853 | Msa0828200:CDS |
| AATTTGACACAATATGGGTT+TGG | 0.409583 | 5_4:-503400 | None:intergenic |
| TATGAGTTTCATTTGAAAAC+CGG | 0.409910 | 5_4:-507294 | None:intergenic |
| TTAATGCAGGTCAAGCTTCT+GGG | 0.411481 | 5_4:+506266 | Msa0828200:CDS |
| TTTCTTCTTATTTAGCTGAC+TGG | 0.411795 | 5_4:+507646 | Msa0828200:three_prime_UTR |
| AGCTTTGGGGAGGAGCAATA+TGG | 0.411800 | 5_4:-506179 | None:intergenic |
| TCGGTTGGATCAGAAGCTTC+TGG | 0.416167 | 5_4:-507331 | None:intergenic |
| TGAAACCTCGCTAGTGATAT+CGG | 0.425137 | 5_4:-507350 | None:intergenic |
| ATGGATATGTTTCTTATCCA+TGG | 0.429426 | 5_4:+506104 | Msa0828200:CDS |
| TAGTGAGTAGGGACTCAGTT+TGG | 0.440285 | 5_4:-506312 | None:intergenic |
| ATAGAAAGCTCTCCTCCAAC+TGG | 0.440635 | 5_4:-506693 | None:intergenic |
| AAAGAAGAAGATTCAAAACT+TGG | 0.442147 | 5_4:+506729 | Msa0828200:CDS |
| ATGACCCGAATTATGTTGTC+GGG | 0.457753 | 5_4:+503945 | Msa0828200:CDS |
| CCATGGATGGTATCTTCAAC+AGG | 0.458400 | 5_4:+507082 | Msa0828200:CDS |
| ATCATTTACCTTAGTGAGTA+GGG | 0.465579 | 5_4:-506323 | None:intergenic |
| AACATAATTCGGGTCATCAA+TGG | 0.466943 | 5_4:-503939 | None:intergenic |
| AAAACCCGACAACATAATTC+GGG | 0.468163 | 5_4:-503949 | None:intergenic |
| AGAGGAATTTGACACAATAT+GGG | 0.474481 | 5_4:-503405 | None:intergenic |
| TCAGAAGCTTCTGGTGGCAA+TGG | 0.477271 | 5_4:-507322 | None:intergenic |
| GACCTCTTCAGTACGACTAA+TGG | 0.480305 | 5_4:-506757 | None:intergenic |
| CATCTGAAGTTCAAATTGGC+CGG | 0.481830 | 5_4:+507275 | Msa0828200:CDS |
| TTTAGAGGAGAAAGAAGAAG+AGG | 0.484665 | 5_4:-503423 | None:intergenic |
| CGTTTATGGTATGCTCCAGT+TGG | 0.489922 | 5_4:+506678 | Msa0828200:CDS |
| GGCAATGGCTGCAGCACAGA+AGG | 0.495943 | 5_4:-507253 | None:intergenic |
| CCACTTCTTCCACCTTTGAA+AGG | 0.496983 | 5_4:-503770 | None:intergenic |
| GTCTGTGCAAGGATAGCTTC+TGG | 0.498058 | 5_4:-507138 | None:intergenic |
| ATAATGTACACTATTGTACT+AGG | 0.499584 | 5_4:+507612 | Msa0828200:three_prime_UTR |
| AGCTTCAAGAAGCAGTAGAA+TGG | 0.500970 | 5_4:+506051 | Msa0828200:intron |
| CTCAAAGTGAAACATGATCA+TGG | 0.501211 | 5_4:+503568 | Msa0828200:exon |
| CCTTTCAAAGGTGGAAGAAG+TGG | 0.502285 | 5_4:+503770 | Msa0828200:CDS |
| ATTGTTCCGAATGATGCGTC+GGG | 0.503672 | 5_4:+503893 | Msa0828200:CDS |
| CCATGCATTTGCTCTTGCTA+GGG | 0.506175 | 5_4:-506242 | None:intergenic |
| CAGAAGCTTCTGGTGGCAAT+GGG | 0.506734 | 5_4:-507321 | None:intergenic |
| TCTTGCATCCTTCTCTCCCA+TGG | 0.511112 | 5_4:-506121 | None:intergenic |
| ATCTAGAGATTAGTAAATGG+TGG | 0.512523 | 5_4:-503281 | None:intergenic |
| TTATGGTATGCTCCAGTTGG+AGG | 0.512618 | 5_4:+506681 | Msa0828200:CDS |
| CTTCCTTTGGGACCGATCGT+TGG | 0.519217 | 5_4:+507189 | Msa0828200:CDS |
| CGGCCAATTTGAACTTCAGA+TGG | 0.521290 | 5_4:-507274 | None:intergenic |
| GAAGTTCCAAAGCAGATGAA+TGG | 0.521349 | 5_4:+503663 | Msa0828200:CDS |
| GATGACCCGAATTATGTTGT+CGG | 0.526077 | 5_4:+503944 | Msa0828200:CDS |
| GATCATTTACCTTAGTGAGT+AGG | 0.527150 | 5_4:-506324 | None:intergenic |
| AACTGAGTCCCTACTCACTA+AGG | 0.531054 | 5_4:+506315 | Msa0828200:CDS |
| TCAAGAAGCGTATAAGAAGA+AGG | 0.533469 | 5_4:+503808 | Msa0828200:CDS |
| TCCATGCATTTGCTCTTGCT+AGG | 0.533509 | 5_4:-506243 | None:intergenic |
| GCAAATGCATGGATTAATGC+AGG | 0.538218 | 5_4:+506253 | Msa0828200:CDS |
| ATGTACCTGCTACACGTTCA+GGG | 0.538477 | 5_4:+506981 | Msa0828200:CDS |
| TTTCTTATCCATGGGAGAGA+AGG | 0.539848 | 5_4:+506113 | Msa0828200:CDS |
| GCATTTGATTTGTAGAACAA+TGG | 0.540004 | 5_4:+507528 | Msa0828200:three_prime_UTR |
| CGCCATTAGTCGTACTGAAG+AGG | 0.541414 | 5_4:+506755 | Msa0828200:CDS |
| CGATATAATTCACCTTTCAA+AGG | 0.544816 | 5_4:+503758 | Msa0828200:CDS |
| TTGTAACTCCGCCAATTCAT+CGG | 0.546054 | 5_4:-503864 | None:intergenic |
| TATAATTCACCTTTCAAAGG+TGG | 0.547775 | 5_4:+503761 | Msa0828200:CDS |
| TGGATATGTTTCTTATCCAT+GGG | 0.548252 | 5_4:+506105 | Msa0828200:CDS |
| ACAGTAGATATGCTACAAAC+CGG | 0.548907 | 5_4:+503686 | Msa0828200:CDS |
| ACCTCGCTAGTGATATCGGT+TGG | 0.551736 | 5_4:-507346 | None:intergenic |
| CTTAGCCCTGAACGTGTAGC+AGG | 0.552589 | 5_4:-506986 | None:intergenic |
| AACTCTGGTGTGTCTGTGCA+AGG | 0.563105 | 5_4:-507149 | None:intergenic |
| CAAGGATAGCTTCTGGCTCA+AGG | 0.563411 | 5_4:-507131 | None:intergenic |
| TATTGTTCCGAATGATGCGT+CGG | 0.564442 | 5_4:+503892 | Msa0828200:CDS |
| ACAAGGACAAAACTACAAGA+TGG | 0.571738 | 5_4:+506085 | Msa0828200:CDS |
| AAGAGGCTCCGATGAATTGG+CGG | 0.571900 | 5_4:+503856 | Msa0828200:CDS |
| ATGGAGGAGAATTGGAACTC+TGG | 0.573386 | 5_4:-507164 | None:intergenic |
| GAAATCATGAAATCTGAATG+AGG | 0.576150 | 5_4:-507407 | None:intergenic |
| CCTGTTGAAGATACCATCCA+TGG | 0.578338 | 5_4:-507082 | None:intergenic |
| CCCTAGCAAGAGCAAATGCA+TGG | 0.578440 | 5_4:+506242 | Msa0828200:CDS |
| AAGCTCTTCGACTATGTCGC+CGG | 0.580294 | 5_4:-503705 | None:intergenic |
| CAACACCTATGTCTATTCCA+TGG | 0.584176 | 5_4:-506644 | None:intergenic |
| ATAGTCGAAGAGCTTCGAAT+CGG | 0.585608 | 5_4:+503713 | Msa0828200:CDS |
| TTTGTTTGGAAAACATAGAG+AGG | 0.592502 | 5_4:-503456 | None:intergenic |
| TAATGCAGGTCAAGCTTCTG+GGG | 0.594138 | 5_4:+506267 | Msa0828200:CDS |
| TCTAGAGATTAGTAAATGGT+GGG | 0.596630 | 5_4:-503280 | None:intergenic |
| CTACTCTATCTGAAGCTTTG+GGG | 0.596829 | 5_4:-506192 | None:intergenic |
| CGTTGGTTAATTCAAGCGGT+GGG | 0.598754 | 5_4:+507206 | Msa0828200:CDS |
| ATTTGAACTTCAGATGGCAA+TGG | 0.598877 | 5_4:-507268 | None:intergenic |
| TCGTTGGTTAATTCAAGCGG+TGG | 0.599562 | 5_4:+507205 | Msa0828200:CDS |
| GATTACCATGGAATAGACAT+AGG | 0.600024 | 5_4:+506639 | Msa0828200:CDS |
| AGGCTTGAGAGAGATACAGC+TGG | 0.610095 | 5_4:+507379 | Msa0828200:CDS |
| ATCGGTCCCAAAGGAAGACA+TGG | 0.611774 | 5_4:-507183 | None:intergenic |
| CGATCGTTGGTTAATTCAAG+CGG | 0.619505 | 5_4:+507202 | Msa0828200:CDS |
| TAACCAACGATCGGTCCCAA+AGG | 0.619719 | 5_4:-507192 | None:intergenic |
| GAATGGTAAATGCACTAACA+AGG | 0.621103 | 5_4:+506068 | Msa0828200:CDS |
| CTCTATCTGAAGCTTTGGGG+AGG | 0.627339 | 5_4:-506189 | None:intergenic |
| CGCTTGAATTAACCAACGAT+CGG | 0.631713 | 5_4:-507201 | None:intergenic |
| TTTCTCTCTCTCTAGCAACT+GGG | 0.634700 | 5_4:+507426 | Msa0828200:CDS |
| CTAGCGAGGTTTCACAATCG+AGG | 0.649633 | 5_4:+507359 | Msa0828200:CDS |
| ATAATGATTCGAGTTCGAAG+AGG | 0.657808 | 5_4:+503839 | Msa0828200:CDS |
| TCCAACCGATATCACTAGCG+AGG | 0.687705 | 5_4:+507345 | Msa0828200:CDS |
| GTTGGATCAGAAGCTTCTGG+TGG | 0.702542 | 5_4:-507328 | None:intergenic |
| TTGTTCCGAATGATGCGTCG+GGG | 0.714999 | 5_4:+503894 | Msa0828200:CDS |
| GGTCCCAAAGGAAGACATGG+AGG | 0.715574 | 5_4:-507180 | None:intergenic |
| TTATCAATCGAATGTCTACG+AGG | 0.747317 | 5_4:+503641 | Msa0828200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATGTATGATAAATT+TGG | - | chr5_4:503529-503548 | None:intergenic | 10.0% |
| !!! | AGTCTAATTTTTTAAAAAAT+TGG | - | chr5_4:505080-505099 | None:intergenic | 10.0% |
| !! | AAAAATTAGACTATAAATAT+AGG | + | chr5_4:505088-505107 | Msa0828200:intron | 10.0% |
| !!! | ATAATTTTATTGTAATATAC+AGG | + | chr5_4:506922-506941 | Msa0828200:intron | 10.0% |
| !!! | TAATTTTATTGTAATATACA+GGG | + | chr5_4:506923-506942 | Msa0828200:intron | 10.0% |
| !! | TTTATATTCCAATAATTATA+TGG | + | chr5_4:507731-507750 | Msa0828200:three_prime_UTR | 10.0% |
| !!! | TTCTTAAATATTTTTCAGAT+GGG | + | chr5_4:503318-503337 | Msa0828200:five_prime_UTR | 15.0% |
| !!! | AATTTTGAGTTATTTTATGA+AGG | - | chr5_4:503494-503513 | None:intergenic | 15.0% |
| !! | AATTAGAATTCTATAAACAA+GGG | - | chr5_4:504213-504232 | None:intergenic | 15.0% |
| !! | AAATTAGAATTCTATAAACA+AGG | - | chr5_4:504214-504233 | None:intergenic | 15.0% |
| !!! | TTTTTAAAAGATTTTTTCTC+CGG | + | chr5_4:504231-504250 | Msa0828200:intron | 15.0% |
| !!! | TAATGAATTTTATCTAAAGA+CGG | - | chr5_4:504293-504312 | None:intergenic | 15.0% |
| !! | ATGACATTATAAAAAGTTAT+TGG | - | chr5_4:504990-505009 | None:intergenic | 15.0% |
| !! | AGTTAATTATAATTAGTTGT+TGG | + | chr5_4:505588-505607 | Msa0828200:intron | 15.0% |
| !! | TTGATTATATAGTGATTATA+AGG | + | chr5_4:505611-505630 | Msa0828200:intron | 15.0% |
| !! | ATTATAAGGTAATTAATTGT+TGG | + | chr5_4:505625-505644 | Msa0828200:intron | 15.0% |
| !! | TATAATACATATAGTTAAAG+AGG | + | chr5_4:506872-506891 | Msa0828200:intron | 15.0% |
| !! | CATCTGAAAAATATTTAAGA+AGG | - | chr5_4:503319-503338 | None:intergenic | 20.0% |
| !!! | CTTCTTAAATATTTTTCAGA+TGG | + | chr5_4:503317-503336 | Msa0828200:five_prime_UTR | 20.0% |
| !!! | ATTCGATTGATAAAACTTTT+GGG | - | chr5_4:503634-503653 | None:intergenic | 20.0% |
| !! | TTAATCGAACTTTGAATTAT+TGG | - | chr5_4:504103-504122 | None:intergenic | 20.0% |
| !!! | TATCTGAATCGAAAAATTTT+AGG | - | chr5_4:504145-504164 | None:intergenic | 20.0% |
| !!! | AGGAATTTATTTTTTTGACT+TGG | + | chr5_4:504532-504551 | Msa0828200:intron | 20.0% |
| !!! | GGAATTTATTTTTTTGACTT+GGG | + | chr5_4:504533-504552 | Msa0828200:intron | 20.0% |
| !!! | GAATTTATTTTTTTGACTTG+GGG | + | chr5_4:504534-504553 | Msa0828200:intron | 20.0% |
| !!! | AGAATAATTTTTACAGTTGA+GGG | + | chr5_4:504577-504596 | Msa0828200:intron | 20.0% |
| !!! | TGTTTTTAGGACAAATATTT+TGG | + | chr5_4:504635-504654 | Msa0828200:intron | 20.0% |
| !! | TTCAAGAACTAACTTAAAAA+AGG | - | chr5_4:504773-504792 | None:intergenic | 20.0% |
| !! | AATGTAATTTAATTAGATGC+AGG | + | chr5_4:504805-504824 | Msa0828200:intron | 20.0% |
| !!! | CACATTTTAACTTTTAACAA+AGG | - | chr5_4:504868-504887 | None:intergenic | 20.0% |
| !!! | TTATTTTCCCTAATTATGAT+TGG | - | chr5_4:505117-505136 | None:intergenic | 20.0% |
| !! | ATAGGGTTTAATAAAAGAAA+AGG | - | chr5_4:505166-505185 | None:intergenic | 20.0% |
| !! | AGATGAATTTCATTTCTATA+TGG | - | chr5_4:505230-505249 | None:intergenic | 20.0% |
| !! | AGATGTTATAGATAAATGTT+CGG | + | chr5_4:505515-505534 | Msa0828200:intron | 20.0% |
| !!! | AATTGGTGATTTATTAGATT+CGG | + | chr5_4:505541-505560 | Msa0828200:intron | 20.0% |
| !! | AAGAATTTCAATTGATTGTA+AGG | + | chr5_4:505793-505812 | Msa0828200:intron | 20.0% |
| !! | TACAAAGAACAACAAAATAA+TGG | - | chr5_4:507579-507598 | None:intergenic | 20.0% |
| ! | AGAATCTAGAGATTAGTAAA+TGG | - | chr5_4:503287-503306 | None:intergenic | 25.0% |
| !!! | AGAGGTTTTTATGTTTTTAG+AGG | - | chr5_4:503441-503460 | None:intergenic | 25.0% |
| !!! | TTTGAGTTATTTTATGAAGG+TGG | - | chr5_4:503491-503510 | None:intergenic | 25.0% |
| !! | CATTCGATTGATAAAACTTT+TGG | - | chr5_4:503635-503654 | None:intergenic | 25.0% |
| !! | CTTTGAAAGGTGAATTATAT+CGG | - | chr5_4:503760-503779 | None:intergenic | 25.0% |
| ! | AAAGTCAAAAAGCAAAAGAA+AGG | - | chr5_4:504034-504053 | None:intergenic | 25.0% |
| ! | TAATTCAAAGTTCGATTAAG+AGG | + | chr5_4:504104-504123 | Msa0828200:intron | 25.0% |
| !! | TTTTAAACGATTCGTCTTTA+AGG | + | chr5_4:504182-504201 | Msa0828200:intron | 25.0% |
| ! | GCTAAATCAATTAGTTAGTT+TGG | + | chr5_4:504322-504341 | Msa0828200:intron | 25.0% |
| ! | AAAGGAAATAAAAATGTAGC+GGG | - | chr5_4:504407-504426 | None:intergenic | 25.0% |
| ! | GAAAGGAAATAAAAATGTAG+CGG | - | chr5_4:504408-504427 | None:intergenic | 25.0% |
| !! | CTTGTTTGTTTCAACTTTTA+AGG | + | chr5_4:504472-504491 | Msa0828200:intron | 25.0% |
| !! | GAGAATAATTTTTACAGTTG+AGG | + | chr5_4:504576-504595 | Msa0828200:intron | 25.0% |
| ! | AGATTTACATCATGTCAATT+TGG | + | chr5_4:504899-504918 | Msa0828200:intron | 25.0% |
| ! | ATTTCATTTCTATATGGAGT+AGG | - | chr5_4:505224-505243 | None:intergenic | 25.0% |
| ! | TATATATCTATAGCAAAGTG+GGG | - | chr5_4:505496-505515 | None:intergenic | 25.0% |
| ! | CTATATATCTATAGCAAAGT+GGG | - | chr5_4:505497-505516 | None:intergenic | 25.0% |
| ! | TCTATATATCTATAGCAAAG+TGG | - | chr5_4:505498-505517 | None:intergenic | 25.0% |
| ! | AGATAAATGTTCGGTATAAT+TGG | + | chr5_4:505524-505543 | Msa0828200:intron | 25.0% |
| ! | ATTGTAAAAATGTCTCACAT+AGG | + | chr5_4:505722-505741 | Msa0828200:intron | 25.0% |
| ! | GAAAGAAAGTTACTTGAATT+TGG | - | chr5_4:506160-506179 | None:intergenic | 25.0% |
| ! | TTAACTTAATCAACTAAGCT+TGG | + | chr5_4:506368-506387 | Msa0828200:intron | 25.0% |
| ! | TAACTTAATCAACTAAGCTT+GGG | + | chr5_4:506369-506388 | Msa0828200:intron | 25.0% |
| ! | AAAGAAGAAGATTCAAAACT+TGG | + | chr5_4:506729-506748 | Msa0828200:CDS | 25.0% |
| ! | TATGAGTTTCATTTGAAAAC+CGG | - | chr5_4:507297-507316 | None:intergenic | 25.0% |
| ! | ATAATGTACACTATTGTACT+AGG | + | chr5_4:507612-507631 | Msa0828200:three_prime_UTR | 25.0% |
| TCTAGAGATTAGTAAATGGT+GGG | - | chr5_4:503283-503302 | None:intergenic | 30.0% | |
| ATCTAGAGATTAGTAAATGG+TGG | - | chr5_4:503284-503303 | None:intergenic | 30.0% | |
| AATTTGACACAATATGGGTT+TGG | - | chr5_4:503403-503422 | None:intergenic | 30.0% | |
| AGAGGAATTTGACACAATAT+GGG | - | chr5_4:503408-503427 | None:intergenic | 30.0% | |
| AAGAGGAATTTGACACAATA+TGG | - | chr5_4:503409-503428 | None:intergenic | 30.0% | |
| TTTGTTTGGAAAACATAGAG+AGG | - | chr5_4:503459-503478 | None:intergenic | 30.0% | |
| !! | TTGATAAAACTTTTGGGTCT+CGG | - | chr5_4:503628-503647 | None:intergenic | 30.0% |
| CGATATAATTCACCTTTCAA+AGG | + | chr5_4:503758-503777 | Msa0828200:CDS | 30.0% | |
| TATAATTCACCTTTCAAAGG+TGG | + | chr5_4:503761-503780 | Msa0828200:CDS | 30.0% | |
| AAAAACCCGACAACATAATT+CGG | - | chr5_4:503953-503972 | None:intergenic | 30.0% | |
| CAAGTAGCAAACTATGTAAT+CGG | + | chr5_4:504507-504526 | Msa0828200:intron | 30.0% | |
| AAGTAGCAAACTATGTAATC+GGG | + | chr5_4:504508-504527 | Msa0828200:intron | 30.0% | |
| ! | GCTGAAATGTACATGTTTTT+AGG | + | chr5_4:504622-504641 | Msa0828200:intron | 30.0% |
| TAGAAATCAAACAAATGCAG+CGG | - | chr5_4:504672-504691 | None:intergenic | 30.0% | |
| ! | TGTTTGATTTCTATGACTGA+CGG | + | chr5_4:504679-504698 | Msa0828200:intron | 30.0% |
| TGCAGGTGTAAAAATTTACA+CGG | + | chr5_4:504822-504841 | Msa0828200:intron | 30.0% | |
| CATGTCAATTTGGATACATT+AGG | + | chr5_4:504909-504928 | Msa0828200:intron | 30.0% | |
| ATAGGACTCCAATCATAATT+AGG | + | chr5_4:505106-505125 | Msa0828200:intron | 30.0% | |
| TAGGACTCCAATCATAATTA+GGG | + | chr5_4:505107-505126 | Msa0828200:intron | 30.0% | |
| ACAACTCACATGATAAGATA+GGG | - | chr5_4:505183-505202 | None:intergenic | 30.0% | |
| AACAACTCACATGATAAGAT+AGG | - | chr5_4:505184-505203 | None:intergenic | 30.0% | |
| AACAAAGTGACATAAATTGC+TGG | - | chr5_4:505276-505295 | None:intergenic | 30.0% | |
| !! | TTATGTCACTTTGTTTGAAC+TGG | + | chr5_4:505281-505300 | Msa0828200:intron | 30.0% |
| CTTTGTTGAATGTTGACAAT+AGG | + | chr5_4:505308-505327 | Msa0828200:intron | 30.0% | |
| !! | ATGTTTTTGCCTCAAACAAA+AGG | - | chr5_4:505339-505358 | None:intergenic | 30.0% |
| !! | CAACACTAGTTCTATCTAAT+GGG | - | chr5_4:505696-505715 | None:intergenic | 30.0% |
| AAGTCTTCAATCAGAAATGT+CGG | - | chr5_4:505841-505860 | None:intergenic | 30.0% | |
| TTTCTGATTGAAGACTTGTA+AGG | + | chr5_4:505844-505863 | Msa0828200:intron | 30.0% | |
| ATGGATATGTTTCTTATCCA+TGG | + | chr5_4:506104-506123 | Msa0828200:CDS | 30.0% | |
| TGGATATGTTTCTTATCCAT+GGG | + | chr5_4:506105-506124 | Msa0828200:CDS | 30.0% | |
| ATCATTTACCTTAGTGAGTA+GGG | - | chr5_4:506326-506345 | None:intergenic | 30.0% | |
| TCACACAAAAAAGACTTAGT+AGG | + | chr5_4:506345-506364 | Msa0828200:intron | 30.0% | |
| ! | GAGAATCGAAAACTCATTTT+TGG | + | chr5_4:506391-506410 | Msa0828200:intron | 30.0% |
| AACCACTTAAGTTACATGTT+TGG | - | chr5_4:506428-506447 | None:intergenic | 30.0% | |
| TAACATGACATACTAACACA+TGG | + | chr5_4:506505-506524 | Msa0828200:intron | 30.0% | |
| AACAGACACTTGTAGATTAT+TGG | + | chr5_4:507027-507046 | Msa0828200:CDS | 30.0% | |
| GAAATCATGAAATCTGAATG+AGG | - | chr5_4:507410-507429 | None:intergenic | 30.0% | |
| !! | GCATTTGATTTGTAGAACAA+TGG | + | chr5_4:507528-507547 | Msa0828200:three_prime_UTR | 30.0% |
| ! | TTTCTTCTTATTTAGCTGAC+TGG | + | chr5_4:507646-507665 | Msa0828200:three_prime_UTR | 30.0% |
| ! | TAATGTGTTTTGTCTATGTG+AGG | + | chr5_4:507701-507720 | Msa0828200:three_prime_UTR | 30.0% |
| AGATGGGACCATATAATTAT+TGG | - | chr5_4:507742-507761 | None:intergenic | 30.0% | |
| TTTAGAGGAGAAAGAAGAAG+AGG | - | chr5_4:503426-503445 | None:intergenic | 35.0% | |
| !!! | GGTGGTTTTTTTCGTTTGTT+TGG | - | chr5_4:503473-503492 | None:intergenic | 35.0% |
| CATGATCATGTTTCACTTTG+AGG | - | chr5_4:503570-503589 | None:intergenic | 35.0% | |
| CTCAAAGTGAAACATGATCA+TGG | + | chr5_4:503568-503587 | Msa0828200:exon | 35.0% | |
| !! | TGATAAAACTTTTGGGTCTC+GGG | - | chr5_4:503627-503646 | None:intergenic | 35.0% |
| TTATCAATCGAATGTCTACG+AGG | + | chr5_4:503641-503660 | Msa0828200:CDS | 35.0% | |
| ACAGTAGATATGCTACAAAC+CGG | + | chr5_4:503686-503705 | Msa0828200:CDS | 35.0% | |
| ! | TCAAGAAGCGTATAAGAAGA+AGG | + | chr5_4:503808-503827 | Msa0828200:CDS | 35.0% |
| ! | ATAATGATTCGAGTTCGAAG+AGG | + | chr5_4:503839-503858 | Msa0828200:CDS | 35.0% |
| AACATAATTCGGGTCATCAA+TGG | - | chr5_4:503942-503961 | None:intergenic | 35.0% | |
| AAAACCCGACAACATAATTC+GGG | - | chr5_4:503952-503971 | None:intergenic | 35.0% | |
| ! | GAATTATGTTGTCGGGTTTT+TGG | + | chr5_4:503952-503971 | Msa0828200:CDS | 35.0% |
| !! | GTTGAATGCTTTGAGATTCA+AGG | + | chr5_4:503986-504005 | Msa0828200:CDS | 35.0% |
| AAAAGAAAGGAAGTTGAGGT+TGG | - | chr5_4:504021-504040 | None:intergenic | 35.0% | |
| AAGCAAAAGAAAGGAAGTTG+AGG | - | chr5_4:504025-504044 | None:intergenic | 35.0% | |
| TGAAGTAAATCACGTGAGAA+AGG | - | chr5_4:504425-504444 | None:intergenic | 35.0% | |
| !!! | TGACTGACGGCAATTTTTTT+TGG | + | chr5_4:504692-504711 | Msa0828200:intron | 35.0% |
| ATGAAACTTGTGATGTCACA+TGG | + | chr5_4:505414-505433 | Msa0828200:intron | 35.0% | |
| TGAAACTTGTGATGTCACAT+GGG | + | chr5_4:505415-505434 | Msa0828200:intron | 35.0% | |
| GTGGGGATGTAATAAAAAGT+GGG | - | chr5_4:505479-505498 | None:intergenic | 35.0% | |
| AGTGGGGATGTAATAAAAAG+TGG | - | chr5_4:505480-505499 | None:intergenic | 35.0% | |
| ! | GATTCGGTTTGATATTGATC+AGG | + | chr5_4:505557-505576 | Msa0828200:intron | 35.0% |
| !! | CCAACACTAGTTCTATCTAA+TGG | - | chr5_4:505697-505716 | None:intergenic | 35.0% |
| CCATTAGATAGAACTAGTGT+TGG | + | chr5_4:505694-505713 | Msa0828200:intron | 35.0% | |
| ! | TTTCTTCTTTCCTTTTGCGT+GGG | - | chr5_4:505758-505777 | None:intergenic | 35.0% |
| GAAAGAAGAAAGATTTGTCG+TGG | + | chr5_4:505767-505786 | Msa0828200:intron | 35.0% | |
| CTTCTTGAAGCTGAAAATTG+TGG | - | chr5_4:506043-506062 | None:intergenic | 35.0% | |
| GAATGGTAAATGCACTAACA+AGG | + | chr5_4:506068-506087 | Msa0828200:CDS | 35.0% | |
| ACAAGGACAAAACTACAAGA+TGG | + | chr5_4:506085-506104 | Msa0828200:CDS | 35.0% | |
| TGGATGTTCATGAAGACAAT+AGG | - | chr5_4:506295-506314 | None:intergenic | 35.0% | |
| GATCATTTACCTTAGTGAGT+AGG | - | chr5_4:506327-506346 | None:intergenic | 35.0% | |
| CTCCAAACATGTAACTTAAG+TGG | + | chr5_4:506423-506442 | Msa0828200:intron | 35.0% | |
| ACATTCGAAGAAGTTTGAGA+AGG | + | chr5_4:506456-506475 | Msa0828200:intron | 35.0% | |
| GAAGTTTGAGAAGGAAGTTT+AGG | + | chr5_4:506465-506484 | Msa0828200:intron | 35.0% | |
| ! | TTGAGAAGGAAGTTTAGGAT+TGG | + | chr5_4:506470-506489 | Msa0828200:intron | 35.0% |
| GTGTTAGTATGTCATGTTAG+AGG | - | chr5_4:506504-506523 | None:intergenic | 35.0% | |
| GGTAATCCTCAAAACCATAA+AGG | - | chr5_4:506626-506645 | None:intergenic | 35.0% | |
| !!! | TATGGTTTTGAGGATTACCA+TGG | + | chr5_4:506627-506646 | Msa0828200:intron | 35.0% |
| GATTACCATGGAATAGACAT+AGG | + | chr5_4:506639-506658 | Msa0828200:CDS | 35.0% | |
| ATAATCGACAAGAGAAGAGA+TGG | - | chr5_4:506790-506809 | None:intergenic | 35.0% | |
| !! | CAAACCAAAAAGTACTTCCA+TGG | + | chr5_4:507065-507084 | Msa0828200:CDS | 35.0% |
| ATTTGAACTTCAGATGGCAA+TGG | - | chr5_4:507271-507290 | None:intergenic | 35.0% | |
| ! | TTGCCATCTGAAGTTCAAAT+TGG | + | chr5_4:507271-507290 | Msa0828200:CDS | 35.0% |
| GAAGTTCCAAAGCAGATGAA+TGG | + | chr5_4:503663-503682 | Msa0828200:CDS | 40.0% | |
| TACTGTCCATTCATCTGCTT+TGG | - | chr5_4:503672-503691 | None:intergenic | 40.0% | |
| ATAGTCGAAGAGCTTCGAAT+CGG | + | chr5_4:503713-503732 | Msa0828200:CDS | 40.0% | |
| TTGTAACTCCGCCAATTCAT+CGG | - | chr5_4:503867-503886 | None:intergenic | 40.0% | |
| TATTGTTCCGAATGATGCGT+CGG | + | chr5_4:503892-503911 | Msa0828200:CDS | 40.0% | |
| GATGACCCGAATTATGTTGT+CGG | + | chr5_4:503944-503963 | Msa0828200:CDS | 40.0% | |
| ATGACCCGAATTATGTTGTC+GGG | + | chr5_4:503945-503964 | Msa0828200:CDS | 40.0% | |
| GAACAGAACTTCATCGTCAT+CGG | - | chr5_4:504081-504100 | None:intergenic | 40.0% | |
| CGTGTGGCAATAATCTTAAC+AGG | + | chr5_4:504447-504466 | Msa0828200:intron | 40.0% | |
| AGCAAACTATGTAATCGGGA+AGG | + | chr5_4:504512-504531 | Msa0828200:intron | 40.0% | |
| !!! | TTTTGACTTGGGGTGTAAGT+TGG | + | chr5_4:504544-504563 | Msa0828200:intron | 40.0% |
| ! | GTCACTTTGTTTGAACTGGT+TGG | + | chr5_4:505285-505304 | Msa0828200:intron | 40.0% |
| TTTGCCTCAAACAAAAGGTG+TGG | - | chr5_4:505334-505353 | None:intergenic | 40.0% | |
| TACATCATTCATGTGCAGCA+AGG | - | chr5_4:505442-505461 | None:intergenic | 40.0% | |
| ! | CTTTCTTCTTTCCTTTTGCG+TGG | - | chr5_4:505759-505778 | None:intergenic | 40.0% |
| ! | ATGAAGCACTAACACAGACA+CGG | - | chr5_4:505952-505971 | None:intergenic | 40.0% |
| AGCTTCAAGAAGCAGTAGAA+TGG | + | chr5_4:506051-506070 | Msa0828200:intron | 40.0% | |
| TTTCTTATCCATGGGAGAGA+AGG | + | chr5_4:506113-506132 | Msa0828200:CDS | 40.0% | |
| ! | CTACTCTATCTGAAGCTTTG+GGG | - | chr5_4:506195-506214 | None:intergenic | 40.0% |
| ! | GCTACTCTATCTGAAGCTTT+GGG | - | chr5_4:506196-506215 | None:intergenic | 40.0% |
| ! | TGCTACTCTATCTGAAGCTT+TGG | - | chr5_4:506197-506216 | None:intergenic | 40.0% |
| ! | GCAAATGCATGGATTAATGC+AGG | + | chr5_4:506253-506272 | Msa0828200:CDS | 40.0% |
| ATTAATGCAGGTCAAGCTTC+TGG | + | chr5_4:506265-506284 | Msa0828200:CDS | 40.0% | |
| TTAATGCAGGTCAAGCTTCT+GGG | + | chr5_4:506266-506285 | Msa0828200:CDS | 40.0% | |
| CCAGATATCTGTCACACAAA+CGG | - | chr5_4:506537-506556 | None:intergenic | 40.0% | |
| CATAAAGGCTTGCATTTGCT+AGG | - | chr5_4:506611-506630 | None:intergenic | 40.0% | |
| CTAGCAAATGCAAGCCTTTA+TGG | + | chr5_4:506609-506628 | Msa0828200:intron | 40.0% | |
| !! | TGCAAGCCTTTATGGTTTTG+AGG | + | chr5_4:506617-506636 | Msa0828200:intron | 40.0% |
| CAACACCTATGTCTATTCCA+TGG | - | chr5_4:506647-506666 | None:intergenic | 40.0% | |
| TTGTTCGAGCAGTTCGTTTA+TGG | + | chr5_4:506664-506683 | Msa0828200:CDS | 40.0% | |
| !!! | CCATCCATGGAAGTACTTTT+TGG | - | chr5_4:507072-507091 | None:intergenic | 40.0% |
| !! | CCAAAAAGTACTTCCATGGA+TGG | + | chr5_4:507069-507088 | Msa0828200:CDS | 40.0% |
| CGCTTGAATTAACCAACGAT+CGG | - | chr5_4:507204-507223 | None:intergenic | 40.0% | |
| ! | CGATCGTTGGTTAATTCAAG+CGG | + | chr5_4:507202-507221 | Msa0828200:CDS | 40.0% |
| ! | CATCTGAAGTTCAAATTGGC+CGG | + | chr5_4:507275-507294 | Msa0828200:CDS | 40.0% |
| TGAAACCTCGCTAGTGATAT+CGG | - | chr5_4:507353-507372 | None:intergenic | 40.0% | |
| ATTTCTCTCTCTCTAGCAAC+TGG | + | chr5_4:507425-507444 | Msa0828200:CDS | 40.0% | |
| TTTCTCTCTCTCTAGCAACT+GGG | + | chr5_4:507426-507445 | Msa0828200:CDS | 40.0% | |
| ! | GTGTTTTGTCTATGTGAGGT+TGG | + | chr5_4:507705-507724 | Msa0828200:three_prime_UTR | 40.0% |
| !! | AAAACTTTTGGGTCTCGGGT+TGG | - | chr5_4:503623-503642 | None:intergenic | 45.0% |
| CCACTTCTTCCACCTTTGAA+AGG | - | chr5_4:503773-503792 | None:intergenic | 45.0% | |
| CCTTTCAAAGGTGGAAGAAG+TGG | + | chr5_4:503770-503789 | Msa0828200:CDS | 45.0% | |
| ATTGTTCCGAATGATGCGTC+GGG | + | chr5_4:503893-503912 | Msa0828200:CDS | 45.0% | |
| !!! | TTCTCCGGTTTTGAGCAAGA+TGG | + | chr5_4:504246-504265 | Msa0828200:intron | 45.0% |
| !!! | TCTCCGGTTTTGAGCAAGAT+GGG | + | chr5_4:504247-504266 | Msa0828200:intron | 45.0% |
| CGTGATTTACTTCACACGTG+TGG | + | chr5_4:504431-504450 | Msa0828200:intron | 45.0% | |
| !! | TAGGCCACACCTTTTGTTTG+AGG | + | chr5_4:505327-505346 | Msa0828200:intron | 45.0% |
| AAAGAACACACCCACGCAAA+AGG | + | chr5_4:505745-505764 | Msa0828200:intron | 45.0% | |
| TGACGTGTCAGTGTTGTGTA+TGG | + | chr5_4:505923-505942 | Msa0828200:intron | 45.0% | |
| CCATGCATTTGCTCTTGCTA+GGG | - | chr5_4:506245-506264 | None:intergenic | 45.0% | |
| TCCATGCATTTGCTCTTGCT+AGG | - | chr5_4:506246-506265 | None:intergenic | 45.0% | |
| TAATGCAGGTCAAGCTTCTG+GGG | + | chr5_4:506267-506286 | Msa0828200:CDS | 45.0% | |
| TAGTGAGTAGGGACTCAGTT+TGG | - | chr5_4:506315-506334 | None:intergenic | 45.0% | |
| AACTGAGTCCCTACTCACTA+AGG | + | chr5_4:506315-506334 | Msa0828200:CDS | 45.0% | |
| CCGTTTGTGTGACAGATATC+TGG | + | chr5_4:506534-506553 | Msa0828200:intron | 45.0% | |
| CGTTTATGGTATGCTCCAGT+TGG | + | chr5_4:506678-506697 | Msa0828200:CDS | 45.0% | |
| TTATGGTATGCTCCAGTTGG+AGG | + | chr5_4:506681-506700 | Msa0828200:CDS | 45.0% | |
| ATAGAAAGCTCTCCTCCAAC+TGG | - | chr5_4:506696-506715 | None:intergenic | 45.0% | |
| GACCTCTTCAGTACGACTAA+TGG | - | chr5_4:506760-506779 | None:intergenic | 45.0% | |
| AATGTACCTGCTACACGTTC+AGG | + | chr5_4:506980-506999 | Msa0828200:CDS | 45.0% | |
| ATGTACCTGCTACACGTTCA+GGG | + | chr5_4:506981-507000 | Msa0828200:CDS | 45.0% | |
| CCTGTTGAAGATACCATCCA+TGG | - | chr5_4:507085-507104 | None:intergenic | 45.0% | |
| CCATGGATGGTATCTTCAAC+AGG | + | chr5_4:507082-507101 | Msa0828200:CDS | 45.0% | |
| ATGGAGGAGAATTGGAACTC+TGG | - | chr5_4:507167-507186 | None:intergenic | 45.0% | |
| AGGAAGACATGGAGGAGAAT+TGG | - | chr5_4:507175-507194 | None:intergenic | 45.0% | |
| TTCTCCTCCATGTCTTCCTT+TGG | + | chr5_4:507176-507195 | Msa0828200:CDS | 45.0% | |
| TCTCCTCCATGTCTTCCTTT+GGG | + | chr5_4:507177-507196 | Msa0828200:CDS | 45.0% | |
| ! | TCGTTGGTTAATTCAAGCGG+TGG | + | chr5_4:507205-507224 | Msa0828200:CDS | 45.0% |
| ! | CGTTGGTTAATTCAAGCGGT+GGG | + | chr5_4:507206-507225 | Msa0828200:CDS | 45.0% |
| CGGCCAATTTGAACTTCAGA+TGG | - | chr5_4:507277-507296 | None:intergenic | 45.0% | |
| !!! | TTTTTTAAGAAAAATATAAA+CGG | - | chr5_4:504937-504956 | None:intergenic | 5.0% |
| !!! | TCATTTTATTAAATTATTAT+CGG | + | chr5_4:505897-505916 | Msa0828200:intron | 5.0% |
| AAGCTCTTCGACTATGTCGC+CGG | - | chr5_4:503708-503727 | None:intergenic | 50.0% | |
| TCGAAGAGGCTCCGATGAAT+TGG | + | chr5_4:503853-503872 | Msa0828200:CDS | 50.0% | |
| AAGAGGCTCCGATGAATTGG+CGG | + | chr5_4:503856-503875 | Msa0828200:CDS | 50.0% | |
| TTGTTCCGAATGATGCGTCG+GGG | + | chr5_4:503894-503913 | Msa0828200:CDS | 50.0% | |
| TTCTTCCCCGACGCATCATT+CGG | - | chr5_4:503902-503921 | None:intergenic | 50.0% | |
| CAGAACTTCATCGTCATCGG+AGG | - | chr5_4:504078-504097 | None:intergenic | 50.0% | |
| !!! | CTCCGGTTTTGAGCAAGATG+GGG | + | chr5_4:504248-504267 | Msa0828200:intron | 50.0% |
| !! | TGTCGGTGCTACAGAGAAGT+TGG | - | chr5_4:505824-505843 | None:intergenic | 50.0% |
| TCTTGCATCCTTCTCTCCCA+TGG | - | chr5_4:506124-506143 | None:intergenic | 50.0% | |
| !! | AGCTTTGGGGAGGAGCAATA+TGG | - | chr5_4:506182-506201 | None:intergenic | 50.0% |
| !! | CTCTATCTGAAGCTTTGGGG+AGG | - | chr5_4:506192-506211 | None:intergenic | 50.0% |
| CCCTAGCAAGAGCAAATGCA+TGG | + | chr5_4:506242-506261 | Msa0828200:CDS | 50.0% | |
| GCTTCTGCTACTGTGAATGC+AGG | + | chr5_4:506564-506583 | Msa0828200:intron | 50.0% | |
| CGCCATTAGTCGTACTGAAG+AGG | + | chr5_4:506755-506774 | Msa0828200:CDS | 50.0% | |
| !! | CAAGGATAGCTTCTGGCTCA+AGG | - | chr5_4:507134-507153 | None:intergenic | 50.0% |
| GTCTGTGCAAGGATAGCTTC+TGG | - | chr5_4:507141-507160 | None:intergenic | 50.0% | |
| AACTCTGGTGTGTCTGTGCA+AGG | - | chr5_4:507152-507171 | None:intergenic | 50.0% | |
| ATCGGTCCCAAAGGAAGACA+TGG | - | chr5_4:507186-507205 | None:intergenic | 50.0% | |
| TAACCAACGATCGGTCCCAA+AGG | - | chr5_4:507195-507214 | None:intergenic | 50.0% | |
| CAGAAGCTTCTGGTGGCAAT+GGG | - | chr5_4:507324-507343 | None:intergenic | 50.0% | |
| TCAGAAGCTTCTGGTGGCAA+TGG | - | chr5_4:507325-507344 | None:intergenic | 50.0% | |
| GTTGGATCAGAAGCTTCTGG+TGG | - | chr5_4:507331-507350 | None:intergenic | 50.0% | |
| TCGGTTGGATCAGAAGCTTC+TGG | - | chr5_4:507334-507353 | None:intergenic | 50.0% | |
| TCCAACCGATATCACTAGCG+AGG | + | chr5_4:507345-507364 | Msa0828200:CDS | 50.0% | |
| ACCTCGCTAGTGATATCGGT+TGG | - | chr5_4:507349-507368 | None:intergenic | 50.0% | |
| CTAGCGAGGTTTCACAATCG+AGG | + | chr5_4:507359-507378 | Msa0828200:CDS | 50.0% | |
| AGGCTTGAGAGAGATACAGC+TGG | + | chr5_4:507379-507398 | Msa0828200:CDS | 50.0% | |
| CGCCCCATCTTGCTCAAAAC+CGG | - | chr5_4:504253-504272 | None:intergenic | 55.0% | |
| !!! | CGGTTTTGAGCAAGATGGGG+CGG | + | chr5_4:504251-504270 | Msa0828200:intron | 55.0% |
| CTTAGCCCTGAACGTGTAGC+AGG | - | chr5_4:506989-507008 | None:intergenic | 55.0% | |
| GGTCCCAAAGGAAGACATGG+AGG | - | chr5_4:507183-507202 | None:intergenic | 55.0% | |
| !! | CTTCCTTTGGGACCGATCGT+TGG | + | chr5_4:507189-507208 | Msa0828200:CDS | 55.0% |
| GGCAATGGCTGCAGCACAGA+AGG | - | chr5_4:507256-507275 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 503266 | 507761 | 503266 | ID=Msa0828200;Name=Msa0828200 |
| chr5_4 | mRNA | 503266 | 507761 | 503266 | ID=Msa0828200-mRNA-1;Parent=Msa0828200;Name=Msa0828200-mRNA-1;_AED=0.04;_eAED=0.04;_QI=315|0.66|0.75|1|1|1|4|308|452 |
| chr5_4 | exon | 503266 | 504007 | 503266 | ID=Msa0828200-mRNA-1:exon:78;Parent=Msa0828200-mRNA-1 |
| chr5_4 | exon | 506053 | 506336 | 506053 | ID=Msa0828200-mRNA-1:exon:79;Parent=Msa0828200-mRNA-1 |
| chr5_4 | exon | 506639 | 506776 | 506639 | ID=Msa0828200-mRNA-1:exon:80;Parent=Msa0828200-mRNA-1 |
| chr5_4 | exon | 506944 | 507761 | 506944 | ID=Msa0828200-mRNA-1:exon:81;Parent=Msa0828200-mRNA-1 |
| chr5_4 | five_prime_UTR | 503266 | 503580 | 503266 | ID=Msa0828200-mRNA-1:five_prime_utr;Parent=Msa0828200-mRNA-1 |
| chr5_4 | CDS | 503581 | 504007 | 503581 | ID=Msa0828200-mRNA-1:cds;Parent=Msa0828200-mRNA-1 |
| chr5_4 | CDS | 506053 | 506336 | 506053 | ID=Msa0828200-mRNA-1:cds;Parent=Msa0828200-mRNA-1 |
| chr5_4 | CDS | 506639 | 506776 | 506639 | ID=Msa0828200-mRNA-1:cds;Parent=Msa0828200-mRNA-1 |
| chr5_4 | CDS | 506944 | 507453 | 506944 | ID=Msa0828200-mRNA-1:cds;Parent=Msa0828200-mRNA-1 |
| chr5_4 | three_prime_UTR | 507454 | 507761 | 507454 | ID=Msa0828200-mRNA-1:three_prime_utr;Parent=Msa0828200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
