AlfalfaGEDB | Msa1273430

M. sativa cultivar zhongmu-4 / Msa1273430

KEGG: K01988
GO: -
PFAM: PF04488.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273430	XP_003607886.1	73.950	119	28	2	16	131	381	499	1.22e-48	174

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273430	sp\|P0C8Q4\|Y4990_ARATH	56.566	99	42	1	33	130	468	566	2.94e-30	117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273430	Q2MGS1	73.950	119	28	2	16	131	381	499	5.83e-49	174

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014710	Msa1273430	0.809940	1.476157e-50	-8.615850e-47
Msa0201070	Msa1273430	0.839598	1.439521e-57	-8.615850e-47
Msa0220580	Msa1273430	0.808206	3.471208e-50	-8.615850e-47
Msa0220740	Msa1273430	0.811854	5.685075e-51	-8.615850e-47
Msa0243460	Msa1273430	0.806770	6.998816e-50	-8.615850e-47
Msa0350870	Msa1273430	0.826569	2.524365e-54	-8.615850e-47
Msa0366970	Msa1273430	0.803990	2.677027e-49	-8.615850e-47
Msa0538600	Msa1273430	0.806534	7.851204e-50	-8.615850e-47
Msa0569500	Msa1273430	0.803240	3.831082e-49	-8.615850e-47
Msa0572480	Msa1273430	0.801967	7.014319e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273430	MtrunA17_Chr4g0043671	73.950	119	28	2	16	131	381	499	1.12e-52	174
Msa1273430	MtrunA17_Chr7g0241911	37.349	83	48	1	39	117	280	362	1.58e-11	60.5
Msa1273430	MtrunA17_Chr2g0282021	35.000	100	60	2	39	133	107	206	4.41e-11	58.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1273430	AT4G19900.1	56.566	99	42	1	33	130	468	566	2.99e-31	117
Msa1273430	AT2G38152.1	39.362	94	49	2	39	124	209	302	1.74e-12	63.5

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Find 29 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTATGATATCAGAGTCT+AGG	0.533919	8_3:+7153822	None:intergenic
ACCATCCTCTTCAAAATCGA+TGG	0.522587	8_3:-7156466	Msa1273430:exon
ACTGTTGCTCAGAATTGGAT+TGG	0.495046	8_3:+7156397	None:intergenic
AGGGTTGCACAAAAGTTTGT+AGG	0.443043	8_3:-7153102	Msa1273430:CDS
ATCGATGCCTACCGAATCGA+TGG	0.556909	8_3:-7156422	Msa1273430:CDS
ATGACGATAACAGTTTGAGA+TGG	0.623622	8_3:-7153146	Msa1273430:CDS
ATGGTGCTGATCTATTGACG+AGG	0.747090	8_3:-7153122	Msa1273430:CDS
ATTGGAACCATCGATTCGGT+AGG	0.631479	8_3:+7156415	None:intergenic
CAATTCTGAGCAACAGTTTC+AGG	0.148240	8_3:-7156391	Msa1273430:intron
CTGAAACTGTTGCTCAGAAT+TGG	0.280361	8_3:+7156392	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTCTTCTTTCTTAAATCGA+TGG	-	chr8_3:7153010-7153029	Msa1273430:three_prime_UTR	30.0%
CTTTGAATGTTTAGGCTTAA+AGG	-	chr8_3:7153104-7153123	Msa1273430:CDS	30.0%
GGATTAGATCATGAAAACAT+TGG	+	chr8_3:7153174-7153193	None:intergenic	30.0%
TTCATGATCTAATCCATCAA+AGG	-	chr8_3:7153179-7153198	Msa1273430:CDS	30.0%
GTTAAGTAAACAACCAACTT+AGG	-	chr8_3:7153882-7153901	Msa1273430:intron	30.0%
TTTAACTCTTCAAGGTAGTA+AGG	+	chr8_3:7153910-7153929	None:intergenic	30.0%
AAAAAGAAAAGGGACATTGT+AGG	-	chr8_3:7153927-7153946	Msa1273430:intron	30.0%
TTGTGCTTCATAAGAATTCA+GGG	+	chr8_3:7154036-7154055	None:intergenic	30.0%
ATTGTGCTTCATAAGAATTC+AGG	+	chr8_3:7154037-7154056	None:intergenic	30.0%
TGTCTATATATGGATGACTA+AGG	-	chr8_3:7154151-7154170	Msa1273430:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	7152825	7156541	7152825	ID=Msa1273430;Name=Msa1273430
chr8_3	mRNA	7152825	7156541	7152825	ID=Msa1273430-mRNA-1;Parent=Msa1273430;Name=Msa1273430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=72\|0.33\|0.75\|1\|0.66\|0.75\|4\|216\|138
chr8_3	exon	7152825	7153209	7152825	ID=Msa1273430-mRNA-1:exon:2791;Parent=Msa1273430-mRNA-1
chr8_3	exon	7153725	7153859	7153725	ID=Msa1273430-mRNA-1:exon:2790;Parent=Msa1273430-mRNA-1
chr8_3	exon	7154510	7154544	7154510	ID=Msa1273430-mRNA-1:exon:2789;Parent=Msa1273430-mRNA-1
chr8_3	exon	7156392	7156541	7156392	ID=Msa1273430-mRNA-1:exon:2788;Parent=Msa1273430-mRNA-1
chr8_3	five_prime_UTR	7156470	7156541	7156470	ID=Msa1273430-mRNA-1:five_prime_utr;Parent=Msa1273430-mRNA-1
chr8_3	CDS	7156392	7156469	7156392	ID=Msa1273430-mRNA-1:cds;Parent=Msa1273430-mRNA-1
chr8_3	CDS	7154510	7154544	7154510	ID=Msa1273430-mRNA-1:cds;Parent=Msa1273430-mRNA-1
chr8_3	CDS	7153725	7153859	7153725	ID=Msa1273430-mRNA-1:cds;Parent=Msa1273430-mRNA-1
chr8_3	CDS	7153041	7153209	7153041	ID=Msa1273430-mRNA-1:cds;Parent=Msa1273430-mRNA-1
chr8_3	three_prime_UTR	7152825	7153040	7152825	ID=Msa1273430-mRNA-1:three_prime_utr;Parent=Msa1273430-mRNA-1

Gene Sequence

>Msa1273430

ATGGTTTTCGCTTTGCTACCAATAAATCGATGCCTACCGAATCGATGGTTCCAATCCAATTCTGAGCAACAGTTTCAGGTGTCTCTGGTCTTCATTCTATTAAGAGTGATTTCATATGGTGGGATCTACCTAGACTCTGATATCATACTTTTGAAGCCATTTTCTTTTCTTAATAATTCTGTTGGTATAGAGGATCAAGTTGTCGGAAGTTCTTTGAATGGTTTTGTGATGACTTTTGGGAGGCACAGTCTGTTCATAAAGGAATGCTTGGAAGAGTTCTATATGACATATGACGATAACAGTTTGAGATGGAATGGTGCTGATCTATTGACGAGGGTTGCACAAAAGTTTGTAGGAGAGAACAAAACTATTAAACAGTTGGAGTTGAGTAAGTTTTATACAGCCTTTGGTGTTTAA

Protein sequence

>Msa1273430

MVFALLPINRCLPNRWFQSNSEQQFQVSLVFILLRVISYGGIYLDSDIILLKPFSFLNNSVGIEDQVVGSSLNGFVMTFGRHSLFIKECLEEFYMTYDDNSLRWNGADLLTRVAQKFVGENKTIKQLELSKFYTAFGV*