Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273430 | XP_003607886.1 | 73.950 | 119 | 28 | 2 | 16 | 131 | 381 | 499 | 1.22e-48 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273430 | sp|P0C8Q4|Y4990_ARATH | 56.566 | 99 | 42 | 1 | 33 | 130 | 468 | 566 | 2.94e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273430 | Q2MGS1 | 73.950 | 119 | 28 | 2 | 16 | 131 | 381 | 499 | 5.83e-49 | 174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa1273430 | 0.809940 | 1.476157e-50 | -8.615850e-47 |
| Msa0653510 | Msa1273430 | 0.801108 | 1.051820e-48 | -8.615850e-47 |
| Msa0657970 | Msa1273430 | 0.813692 | 2.250372e-51 | -8.615850e-47 |
| Msa0760130 | Msa1273430 | 0.814527 | 1.472263e-51 | -8.615850e-47 |
| Msa0776990 | Msa1273430 | 0.821163 | 4.672730e-53 | -8.615850e-47 |
| Msa0796700 | Msa1273430 | 0.805411 | 1.352641e-49 | -8.615850e-47 |
| Msa0201070 | Msa1273430 | 0.839598 | 1.439521e-57 | -8.615850e-47 |
| Msa0220580 | Msa1273430 | 0.808206 | 3.471208e-50 | -8.615850e-47 |
| Msa0220740 | Msa1273430 | 0.811854 | 5.685075e-51 | -8.615850e-47 |
| Msa1239720 | Msa1273430 | 0.807752 | 4.334278e-50 | -8.615850e-47 |
| Msa1273430 | Msa1291660 | 0.824838 | 6.498733e-54 | -8.615850e-47 |
| Msa1273430 | Msa1392260 | 0.815216 | 1.035814e-51 | -8.615850e-47 |
| Msa1273430 | Msa1420290 | 0.806088 | 9.748887e-50 | -8.615850e-47 |
| Msa1273430 | Msa1436480 | 0.805312 | 1.418286e-49 | -8.615850e-47 |
| Msa0366970 | Msa1273430 | 0.803990 | 2.677027e-49 | -8.615850e-47 |
| Msa1075220 | Msa1273430 | -0.805676 | 1.189693e-49 | -8.615850e-47 |
| Msa1082500 | Msa1273430 | 0.801483 | 8.813922e-49 | -8.615850e-47 |
| Msa0243460 | Msa1273430 | 0.806770 | 6.998816e-50 | -8.615850e-47 |
| Msa0350870 | Msa1273430 | 0.826569 | 2.524365e-54 | -8.615850e-47 |
| Msa1162550 | Msa1273430 | -0.813311 | 2.729120e-51 | -8.615850e-47 |
| Msa1165540 | Msa1273430 | 0.809136 | 2.196369e-50 | -8.615850e-47 |
| Msa1195920 | Msa1273430 | 0.802037 | 6.782984e-49 | -8.615850e-47 |
| Msa0538600 | Msa1273430 | 0.806534 | 7.851204e-50 | -8.615850e-47 |
| Msa0569500 | Msa1273430 | 0.803240 | 3.831082e-49 | -8.615850e-47 |
| Msa0572480 | Msa1273430 | 0.801967 | 7.014319e-49 | -8.615850e-47 |
| Msa0844240 | Msa1273430 | 0.806228 | 9.107568e-50 | -8.615850e-47 |
| Msa0861130 | Msa1273430 | 0.800469 | 1.420086e-48 | -8.615850e-47 |
| Msa0892080 | Msa1273430 | 0.812971 | 3.240153e-51 | -8.615850e-47 |
| Msa0927290 | Msa1273430 | 0.805261 | 1.453971e-49 | -8.615850e-47 |
| Msa0967580 | Msa1273430 | 0.805308 | 1.421068e-49 | -8.615850e-47 |
| Msa0969520 | Msa1273430 | 0.814036 | 1.890107e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273430 | MtrunA17_Chr4g0043671 | 73.950 | 119 | 28 | 2 | 16 | 131 | 381 | 499 | 1.12e-52 | 174 |
| Msa1273430 | MtrunA17_Chr7g0241911 | 37.349 | 83 | 48 | 1 | 39 | 117 | 280 | 362 | 1.58e-11 | 60.5 |
| Msa1273430 | MtrunA17_Chr2g0282021 | 35.000 | 100 | 60 | 2 | 39 | 133 | 107 | 206 | 4.41e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273430 | AT4G19900.1 | 56.566 | 99 | 42 | 1 | 33 | 130 | 468 | 566 | 2.99e-31 | 117 |
| Msa1273430 | AT2G38152.1 | 39.362 | 94 | 49 | 2 | 39 | 124 | 209 | 302 | 1.74e-12 | 63.5 |
Find 29 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTGAGCAACAGTTTC+AGG | 0.148240 | 8_3:-7156391 | Msa1273430:intron |
| TTGGTTGAATGGAGTGGATT+TGG | 0.252026 | 8_3:+7156493 | None:intergenic |
| TTCGGTAGGCATCGATTTAT+TGG | 0.258206 | 8_3:+7156429 | None:intergenic |
| TTTGAAGAGGATGGTGATTT+TGG | 0.261175 | 8_3:+7156474 | None:intergenic |
| CTGAAACTGTTGCTCAGAAT+TGG | 0.280361 | 8_3:+7156392 | None:intergenic |
| GAATTATTAAGAAAAGAAAA+TGG | 0.357206 | 8_3:+7153794 | None:intergenic |
| TGGTTGAATGGAGTGGATTT+GGG | 0.364667 | 8_3:+7156494 | None:intergenic |
| TAATAATTCTGTTGGTATAG+AGG | 0.385587 | 8_3:-7153780 | Msa1273430:CDS |
| TCCATGCAGTCTGTTCATAA+AGG | 0.396084 | 8_3:-7153196 | Msa1273430:intron |
| GTTATGTTGTATGAATGTTT+AGG | 0.431597 | 8_3:-7152883 | Msa1273430:three_prime_UTR |
| AGGGTTGCACAAAAGTTTGT+AGG | 0.443043 | 8_3:-7153102 | Msa1273430:CDS |
| GGTGTTTAAAGTTGCTGCTA+TGG | 0.449422 | 8_3:-7153027 | Msa1273430:exon |
| GTTGTCGGAAGTTCTTTGAA+TGG | 0.478176 | 8_3:-7153752 | Msa1273430:CDS |
| ACTGTTGCTCAGAATTGGAT+TGG | 0.495046 | 8_3:+7156397 | None:intergenic |
| TCTGTTCATAAAGGAATGCT+TGG | 0.498265 | 8_3:-7153187 | Msa1273430:CDS |
| GAACAAAACTATTAAACAGT+TGG | 0.519690 | 8_3:-7153076 | Msa1273430:CDS |
| GGTATAGAGGATCAAGTTGT+CGG | 0.521766 | 8_3:-7153767 | Msa1273430:CDS |
| ACCATCCTCTTCAAAATCGA+TGG | 0.522587 | 8_3:-7156466 | Msa1273430:exon |
| AAAGTATGATATCAGAGTCT+AGG | 0.533919 | 8_3:+7153822 | None:intergenic |
| TTGGATTGGAACCATCGATT+CGG | 0.545274 | 8_3:+7156411 | None:intergenic |
| ATCGATGCCTACCGAATCGA+TGG | 0.556909 | 8_3:-7156422 | Msa1273430:CDS |
| ATGACGATAACAGTTTGAGA+TGG | 0.623622 | 8_3:-7153146 | Msa1273430:CDS |
| ATTGGAACCATCGATTCGGT+AGG | 0.631479 | 8_3:+7156415 | None:intergenic |
| GATAACAGTTTGAGATGGAA+TGG | 0.632347 | 8_3:-7153141 | Msa1273430:CDS |
| GCAGCAACTTTAAACACCAA+AGG | 0.662455 | 8_3:+7153032 | None:intergenic |
| CTGCTATGGTAACAACGAGG+TGG | 0.705669 | 8_3:-7153013 | Msa1273430:three_prime_UTR |
| TGGTGCTGATCTATTGACGA+GGG | 0.734896 | 8_3:-7153121 | Msa1273430:CDS |
| ATGGTGCTGATCTATTGACG+AGG | 0.747090 | 8_3:-7153122 | Msa1273430:CDS |
| TTGCTGCTATGGTAACAACG+AGG | 0.825296 | 8_3:-7153016 | Msa1273430:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTGTATTATTGTATAT+GGG | - | chr8_3:7153466-7153485 | Msa1273430:intron | 10.0% |
| !! | TAATTTAATAAAGTTATGAA+GGG | - | chr8_3:7153814-7153833 | Msa1273430:CDS | 10.0% |
| !! | AATTCATATATATTTATATG+TGG | - | chr8_3:7155068-7155087 | Msa1273430:intron | 10.0% |
| !! | CAAAATATGAATCTATATAT+TGG | + | chr8_3:7153411-7153430 | None:intergenic | 15.0% |
| !!! | GATTCATATTTTGATTTAAT+AGG | - | chr8_3:7153418-7153437 | Msa1273430:intron | 15.0% |
| !! | GTTTATTGTATTATTGTATA+TGG | - | chr8_3:7153465-7153484 | Msa1273430:intron | 15.0% |
| !! | CTAATTTAATAAAGTTATGA+AGG | - | chr8_3:7153813-7153832 | Msa1273430:CDS | 15.0% |
| !! | AATTTAATAAAGTTATGAAG+GGG | - | chr8_3:7153815-7153834 | Msa1273430:CDS | 15.0% |
| !! | GTTATTCTATATAAATTCTA+AGG | + | chr8_3:7153858-7153877 | None:intergenic | 15.0% |
| !!! | TATTTATCTTGTCAATTTTA+CGG | + | chr8_3:7154380-7154399 | None:intergenic | 15.0% |
| !! | GAATTATTAAGAAAAGAAAA+TGG | + | chr8_3:7155553-7155572 | None:intergenic | 15.0% |
| !! | AAGAAGCAGAAAAATTAAAA+GGG | + | chr8_3:7153055-7153074 | None:intergenic | 20.0% |
| !! | AAAGAAGCAGAAAAATTAAA+AGG | + | chr8_3:7153056-7153075 | None:intergenic | 20.0% |
| !! | TTCTGAATAAATGAATTGAT+AGG | - | chr8_3:7153361-7153380 | Msa1273430:intron | 20.0% |
| !! | TTGAAGAGTTAAAAAGAAAA+GGG | - | chr8_3:7153917-7153936 | Msa1273430:intron | 20.0% |
| !!! | AGAAGTTACTATTGATTATT+AGG | - | chr8_3:7153974-7153993 | Msa1273430:intron | 20.0% |
| !!! | GAAGTTACTATTGATTATTA+GGG | - | chr8_3:7153975-7153994 | Msa1273430:intron | 20.0% |
| !! | ATTGATTATTAGGGATATTA+AGG | - | chr8_3:7153984-7154003 | Msa1273430:intron | 20.0% |
| !!! | TATATGCAAAGCTTTATTAA+CGG | - | chr8_3:7154204-7154223 | Msa1273430:intron | 20.0% |
| !!! | AATTGTCATATATCCATTTT+AGG | - | chr8_3:7154469-7154488 | Msa1273430:intron | 20.0% |
| !! | ATAAATCATTCATCCTAAAA+TGG | + | chr8_3:7154485-7154504 | None:intergenic | 20.0% |
| !!! | ATTTTAGGATGAATGATTTA+TGG | - | chr8_3:7154484-7154503 | Msa1273430:intron | 20.0% |
| !! | AGTCTAAAAATAAACAAAGT+GGG | + | chr8_3:7154555-7154574 | None:intergenic | 20.0% |
| !! | TTAATCAAGAAGATCATTTA+TGG | - | chr8_3:7154946-7154965 | Msa1273430:intron | 20.0% |
| !!! | ACCAATTTTTGAATATAGAA+TGG | - | chr8_3:7155224-7155243 | Msa1273430:intron | 20.0% |
| !! | TCCATTCTATATTCAAAAAT+TGG | + | chr8_3:7155228-7155247 | None:intergenic | 20.0% |
| !!! | TCTTTTCTTAATAATTCTGT+TGG | - | chr8_3:7155556-7155575 | Msa1273430:intron | 20.0% |
| !!! | AATGTTGTTTACAAAATGAA+AGG | + | chr8_3:7155662-7155681 | None:intergenic | 20.0% |
| !!! | TTTTGTAAACAACATTTTCA+AGG | - | chr8_3:7155666-7155685 | Msa1273430:intron | 20.0% |
| !! | ATAATATATCAGCATATTCA+AGG | + | chr8_3:7155977-7155996 | None:intergenic | 20.0% |
| !!! | CTTTATATTTTGATATCAAG+TGG | - | chr8_3:7156434-7156453 | Msa1273430:CDS | 20.0% |
| !!! | TTATGCTACTTTGAATGTTT+AGG | - | chr8_3:7153096-7153115 | Msa1273430:CDS | 25.0% |
| ! | TTTGAATGTTTAGGCTTAAA+GGG | - | chr8_3:7153105-7153124 | Msa1273430:CDS | 25.0% |
| ! | TAACTTTGTAAACTTTGTGA+AGG | - | chr8_3:7153307-7153326 | Msa1273430:intron | 25.0% |
| !! | ATCTATATATTGGTGACATT+GGG | + | chr8_3:7153401-7153420 | None:intergenic | 25.0% |
| !! | AATCTATATATTGGTGACAT+TGG | + | chr8_3:7153402-7153421 | None:intergenic | 25.0% |
| ! | TTATTGTATATGGGTTCTTT+AGG | - | chr8_3:7153475-7153494 | Msa1273430:intron | 25.0% |
| !!! | TTCTTTAGGTTGTTTATGTT+TGG | - | chr8_3:7153489-7153508 | Msa1273430:intron | 25.0% |
| !!! | TCTTTAGGTTGTTTATGTTT+GGG | - | chr8_3:7153490-7153509 | Msa1273430:intron | 25.0% |
| !! | TCCAATAGTTTTTATGTAGT+TGG | - | chr8_3:7153567-7153586 | Msa1273430:intron | 25.0% |
| ! | TCCAACTACATAAAAACTAT+TGG | + | chr8_3:7153571-7153590 | None:intergenic | 25.0% |
| !! | AATAGTTTTTATGTAGTTGG+AGG | - | chr8_3:7153570-7153589 | Msa1273430:intron | 25.0% |
| !! | ATTTCAGCTTAGTTATGTTT+TGG | - | chr8_3:7153668-7153687 | Msa1273430:intron | 25.0% |
| !!! | CTTTTCTTTTTAACTCTTCA+AGG | + | chr8_3:7153918-7153937 | None:intergenic | 25.0% |
| ! | CTTGAAGAGTTAAAAAGAAA+AGG | - | chr8_3:7153916-7153935 | Msa1273430:intron | 25.0% |
| ! | GCTGAAATTATGTCTATATA+TGG | - | chr8_3:7154141-7154160 | Msa1273430:intron | 25.0% |
| ! | TTGTAGTGTCAAGTTAATTA+AGG | - | chr8_3:7154227-7154246 | Msa1273430:intron | 25.0% |
| ! | ATTAAATGTGAGATTAGTGT+CGG | - | chr8_3:7154286-7154305 | Msa1273430:intron | 25.0% |
| ! | GTCTAAAAATAAACAAAGTG+GGG | + | chr8_3:7154554-7154573 | None:intergenic | 25.0% |
| ! | GAGTCTAAAAATAAACAAAG+TGG | + | chr8_3:7154556-7154575 | None:intergenic | 25.0% |
| ! | GACATAATACACATGAAATA+GGG | + | chr8_3:7154686-7154705 | None:intergenic | 25.0% |
| ! | TGACATAATACACATGAAAT+AGG | + | chr8_3:7154687-7154706 | None:intergenic | 25.0% |
| !! | TTCATCATTCTTTTACTTTG+TGG | - | chr8_3:7154772-7154791 | Msa1273430:intron | 25.0% |
| ! | GCTAGCTATGTAATATAATT+TGG | - | chr8_3:7154975-7154994 | Msa1273430:intron | 25.0% |
| !! | TATTTTTCACAATCTGCTAT+TGG | - | chr8_3:7155417-7155436 | Msa1273430:intron | 25.0% |
| ! | TAATAATTCTGTTGGTATAG+AGG | - | chr8_3:7155564-7155583 | Msa1273430:intron | 25.0% |
| ! | ATCACTCTTATCATTCAATA+TGG | + | chr8_3:7156067-7156086 | None:intergenic | 25.0% |
| ! | ATATTGAATGATAAGAGTGA+TGG | - | chr8_3:7156066-7156085 | Msa1273430:intron | 25.0% |
| ! | TATTGAATGATAAGAGTGAT+GGG | - | chr8_3:7156067-7156086 | Msa1273430:intron | 25.0% |
| ! | GAACAAAACTATTAAACAGT+TGG | - | chr8_3:7156268-7156287 | Msa1273430:intron | 25.0% |
| ! | GTTATGTTGTATGAATGTTT+AGG | - | chr8_3:7156461-7156480 | Msa1273430:exon | 25.0% |
| ! | AGAAAGAAGAACAGTGATTT+TGG | + | chr8_3:7153002-7153021 | None:intergenic | 30.0% |
| GTTCTTCTTTCTTAAATCGA+TGG | - | chr8_3:7153010-7153029 | Msa1273430:three_prime_UTR | 30.0% | |
| CTTTGAATGTTTAGGCTTAA+AGG | - | chr8_3:7153104-7153123 | Msa1273430:CDS | 30.0% | |
| ! | CTCAGTAATCAAGTTTTTGT+TGG | - | chr8_3:7153131-7153150 | Msa1273430:CDS | 30.0% |
| GGATTAGATCATGAAAACAT+TGG | + | chr8_3:7153174-7153193 | None:intergenic | 30.0% | |
| TTCATGATCTAATCCATCAA+AGG | - | chr8_3:7153179-7153198 | Msa1273430:CDS | 30.0% | |
| ! | TTTTGAATGCATCTTCGTTT+AGG | + | chr8_3:7153241-7153260 | None:intergenic | 30.0% |
| ! | TCAAAAGATGCACATTTTAC+TGG | - | chr8_3:7153255-7153274 | Msa1273430:intron | 30.0% |
| GTTAAGTAAACAACCAACTT+AGG | - | chr8_3:7153882-7153901 | Msa1273430:intron | 30.0% | |
| TTTAACTCTTCAAGGTAGTA+AGG | + | chr8_3:7153910-7153929 | None:intergenic | 30.0% | |
| AAAAAGAAAAGGGACATTGT+AGG | - | chr8_3:7153927-7153946 | Msa1273430:intron | 30.0% | |
| TTGTGCTTCATAAGAATTCA+GGG | + | chr8_3:7154036-7154055 | None:intergenic | 30.0% | |
| ATTGTGCTTCATAAGAATTC+AGG | + | chr8_3:7154037-7154056 | None:intergenic | 30.0% | |
| TGTCTATATATGGATGACTA+AGG | - | chr8_3:7154151-7154170 | Msa1273430:intron | 30.0% | |
| GTCTATATATGGATGACTAA+GGG | - | chr8_3:7154152-7154171 | Msa1273430:intron | 30.0% | |
| TACAGTTGAGGATTATTTGA+AGG | + | chr8_3:7154186-7154205 | None:intergenic | 30.0% | |
| TAACCTCGAATGTTTACTAA+CGG | + | chr8_3:7154263-7154282 | None:intergenic | 30.0% | |
| ! | GTCAATTTTACGGACAATAT+TGG | + | chr8_3:7154370-7154389 | None:intergenic | 30.0% |
| ! | TTTGGAATATCCTTACTTCT+TGG | + | chr8_3:7154584-7154603 | None:intergenic | 30.0% |
| ! | TTTATTGGCTAATGGTGTTA+TGG | - | chr8_3:7154647-7154666 | Msa1273430:intron | 30.0% |
| !! | TTATTGGCTAATGGTGTTAT+GGG | - | chr8_3:7154648-7154667 | Msa1273430:intron | 30.0% |
| ! | TTGCAACTTCATATGTTTTC+AGG | - | chr8_3:7154800-7154819 | Msa1273430:intron | 30.0% |
| AAACCTCTAGGTAATTTCAA+TGG | - | chr8_3:7154859-7154878 | Msa1273430:intron | 30.0% | |
| ATTCCATTGAAATTACCTAG+AGG | + | chr8_3:7154865-7154884 | None:intergenic | 30.0% | |
| TTAATGTGATTAAGCAACGA+GGG | + | chr8_3:7155021-7155040 | None:intergenic | 30.0% | |
| CATTCACATAAATACGGATA+TGG | + | chr8_3:7155113-7155132 | None:intergenic | 30.0% | |
| ! | GCAAAGCATTCACATAAATA+CGG | + | chr8_3:7155119-7155138 | None:intergenic | 30.0% |
| ! | GTCTTCTGTTTTATCAGATA+TGG | - | chr8_3:7155490-7155509 | Msa1273430:intron | 30.0% |
| ! | TTCTGTTTTATCAGATATGG+TGG | - | chr8_3:7155493-7155512 | Msa1273430:intron | 30.0% |
| ! | TCTGTTTTATCAGATATGGT+GGG | - | chr8_3:7155494-7155513 | Msa1273430:intron | 30.0% |
| AAAGTATGATATCAGAGTCT+AGG | + | chr8_3:7155525-7155544 | None:intergenic | 30.0% | |
| !!! | AATGGTTTTGTGATGACTTT+TGG | - | chr8_3:7155610-7155629 | Msa1273430:intron | 30.0% |
| !!! | ATGGTTTTGTGATGACTTTT+GGG | - | chr8_3:7155611-7155630 | Msa1273430:intron | 30.0% |
| AATTGTTTCCTATGAGCATA+GGG | + | chr8_3:7155806-7155825 | None:intergenic | 30.0% | |
| TGAACAAAATCCTACTTTCA+AGG | + | chr8_3:7155898-7155917 | None:intergenic | 30.0% | |
| CATTCAATATGGTTGCAAAA+AGG | + | chr8_3:7156056-7156075 | None:intergenic | 30.0% | |
| ATTGAATGATAAGAGTGATG+GGG | - | chr8_3:7156068-7156087 | Msa1273430:intron | 30.0% | |
| !! | AGTAAGTTTTATACAGCCTT+TGG | - | chr8_3:7156296-7156315 | Msa1273430:intron | 30.0% |
| ! | ATCAAGTAGTGATGTTTTGT+TGG | - | chr8_3:7156407-7156426 | Msa1273430:CDS | 30.0% |
| ! | TTTGAAGAGGATGGTGATTT+TGG | + | chr8_3:7152873-7152892 | None:intergenic | 35.0% |
| !!! | GAAAACCATCGATTTTGAAG+AGG | + | chr8_3:7152886-7152905 | None:intergenic | 35.0% |
| ATGAAAACATTGGTCCGAAA+GGG | + | chr8_3:7153164-7153183 | None:intergenic | 35.0% | |
| TCTAATCCATCAAAGGAAGT+TGG | - | chr8_3:7153186-7153205 | Msa1273430:CDS | 35.0% | |
| ! | TAAAAGTGTGTCATGATACG+TGG | - | chr8_3:7153280-7153299 | Msa1273430:intron | 35.0% |
| CATCAAGAGGAACTAATTTG+AGG | - | chr8_3:7153618-7153637 | Msa1273430:intron | 35.0% | |
| ! | AAGAGGAACTAATTTGAGGT+GGG | - | chr8_3:7153622-7153641 | Msa1273430:intron | 35.0% |
| AAAAGGGACATTGTAGGTAA+AGG | - | chr8_3:7153933-7153952 | Msa1273430:intron | 35.0% | |
| GGTAAAGGAACAATCATGTA+CGG | - | chr8_3:7153948-7153967 | Msa1273430:intron | 35.0% | |
| ! | TCTGACTGGTATTTTGCAAA+AGG | - | chr8_3:7154081-7154100 | Msa1273430:intron | 35.0% |
| ! | CTGGTATTTTGCAAAAGGAA+TGG | - | chr8_3:7154086-7154105 | Msa1273430:intron | 35.0% |
| AAGCTTTGCATATACAGTTG+AGG | + | chr8_3:7154198-7154217 | None:intergenic | 35.0% | |
| TCCAATATTGTCTCCTATGT+CGG | + | chr8_3:7154335-7154354 | None:intergenic | 35.0% | |
| GAATGATTTATGGCCTCTTA+TGG | - | chr8_3:7154494-7154513 | Msa1273430:intron | 35.0% | |
| !! | GATTTCTAGTACACCATAAG+AGG | + | chr8_3:7154510-7154529 | None:intergenic | 35.0% |
| TATTCCAAATTGACCCATGT+TGG | - | chr8_3:7154595-7154614 | Msa1273430:intron | 35.0% | |
| CTTAATGTGATTAAGCAACG+AGG | + | chr8_3:7155022-7155041 | None:intergenic | 35.0% | |
| ATCGCAAATGGATGGATAAT+AGG | - | chr8_3:7155259-7155278 | Msa1273430:intron | 35.0% | |
| AAACAGTGAAAGCTGCATAA+CGG | + | chr8_3:7155360-7155379 | None:intergenic | 35.0% | |
| TGTTCTGATGTATGCATCTT+GGG | - | chr8_3:7155446-7155465 | Msa1273430:intron | 35.0% | |
| TTCCTATGAGCATAGCAATT+GGG | + | chr8_3:7155800-7155819 | None:intergenic | 35.0% | |
| TTTCCTATGAGCATAGCAAT+TGG | + | chr8_3:7155801-7155820 | None:intergenic | 35.0% | |
| GAATTGTTTCCTATGAGCAT+AGG | + | chr8_3:7155807-7155826 | None:intergenic | 35.0% | |
| TTTCAAGGCTTAACTCATGT+AGG | + | chr8_3:7155883-7155902 | None:intergenic | 35.0% | |
| ATGAGTTAAGCCTTGAAAGT+AGG | - | chr8_3:7155885-7155904 | Msa1273430:intron | 35.0% | |
| AATATGGTTGCAAAAAGGCA+CGG | + | chr8_3:7156051-7156070 | None:intergenic | 35.0% | |
| TCTGTTCATAAAGGAATGCT+TGG | - | chr8_3:7156157-7156176 | Msa1273430:intron | 35.0% | |
| ATGACGATAACAGTTTGAGA+TGG | - | chr8_3:7156198-7156217 | Msa1273430:intron | 35.0% | |
| ! | GATAACAGTTTGAGATGGAA+TGG | - | chr8_3:7156203-7156222 | Msa1273430:intron | 35.0% |
| ! | TGGTTGAATGGAGTGGATTT+GGG | + | chr8_3:7152853-7152872 | None:intergenic | 40.0% |
| ! | TTGGTTGAATGGAGTGGATT+TGG | + | chr8_3:7152854-7152873 | None:intergenic | 40.0% |
| !!! | GTGATTTTGGTTGAATGGAG+TGG | + | chr8_3:7152860-7152879 | None:intergenic | 40.0% |
| !!! | GGATGGTGATTTTGGTTGAA+TGG | + | chr8_3:7152865-7152884 | None:intergenic | 40.0% |
| ACCATCCTCTTCAAAATCGA+TGG | - | chr8_3:7152878-7152897 | Msa1273430:three_prime_UTR | 40.0% | |
| !!! | ACCATCGATTTTGAAGAGGA+TGG | + | chr8_3:7152882-7152901 | None:intergenic | 40.0% |
| !! | TTCGGTAGGCATCGATTTAT+TGG | + | chr8_3:7152918-7152937 | None:intergenic | 40.0% |
| ! | TTGGATTGGAACCATCGATT+CGG | + | chr8_3:7152936-7152955 | None:intergenic | 40.0% |
| ACTGTTGCTCAGAATTGGAT+TGG | + | chr8_3:7152950-7152969 | None:intergenic | 40.0% | |
| CTGAAACTGTTGCTCAGAAT+TGG | + | chr8_3:7152955-7152974 | None:intergenic | 40.0% | |
| CAATTCTGAGCAACAGTTTC+AGG | - | chr8_3:7152953-7152972 | Msa1273430:three_prime_UTR | 40.0% | |
| TGAAAACATTGGTCCGAAAG+GGG | + | chr8_3:7153163-7153182 | None:intergenic | 40.0% | |
| CATGAAAACATTGGTCCGAA+AGG | + | chr8_3:7153165-7153184 | None:intergenic | 40.0% | |
| GTTGGAGGAAAAGTAGAAGT+TGG | - | chr8_3:7153585-7153604 | Msa1273430:intron | 40.0% | |
| AAAAGTAGAAGTTGGAGGCT+TGG | - | chr8_3:7153593-7153612 | Msa1273430:intron | 40.0% | |
| AAAGTAGAAGTTGGAGGCTT+GGG | - | chr8_3:7153594-7153613 | Msa1273430:intron | 40.0% | |
| CAAGAGGAACTAATTTGAGG+TGG | - | chr8_3:7153621-7153640 | Msa1273430:intron | 40.0% | |
| ! | TCCTTCCTTTTTGACCCTAA+GGG | + | chr8_3:7153733-7153752 | None:intergenic | 40.0% |
| ! | TTCCTTCCTTTTTGACCCTA+AGG | + | chr8_3:7153734-7153753 | None:intergenic | 40.0% |
| ! | AGGTAGTAAGGTACCTAAGT+TGG | + | chr8_3:7153898-7153917 | None:intergenic | 40.0% |
| AAGACAAACTCGAATCTGAC+TGG | - | chr8_3:7154067-7154086 | Msa1273430:intron | 40.0% | |
| TGACCGTTAGTAAACATTCG+AGG | - | chr8_3:7154257-7154276 | Msa1273430:intron | 40.0% | |
| ! | AAATGTGAGATTAGTGTCGG+TGG | - | chr8_3:7154289-7154308 | Msa1273430:intron | 40.0% |
| !! | AATGTGAGATTAGTGTCGGT+GGG | - | chr8_3:7154290-7154309 | Msa1273430:intron | 40.0% |
| AGAAATCCACTGAGACAAGT+AGG | - | chr8_3:7154523-7154542 | Msa1273430:CDS | 40.0% | |
| GACTCATGTACCAAGAAGTA+AGG | - | chr8_3:7154571-7154590 | Msa1273430:intron | 40.0% | |
| CAATCCAACATGGGTCAATT+TGG | + | chr8_3:7154602-7154621 | None:intergenic | 40.0% | |
| CAAATTGACCCATGTTGGAT+TGG | - | chr8_3:7154600-7154619 | Msa1273430:intron | 40.0% | |
| ACAAGTCTCCAATCCAACAT+GGG | + | chr8_3:7154611-7154630 | None:intergenic | 40.0% | |
| AACAAGTCTCCAATCCAACA+TGG | + | chr8_3:7154612-7154631 | None:intergenic | 40.0% | |
| TCATCATGTCCGTGCTTTAT+TGG | - | chr8_3:7154632-7154651 | Msa1273430:intron | 40.0% | |
| CACCATTAGCCAATAAAGCA+CGG | + | chr8_3:7154644-7154663 | None:intergenic | 40.0% | |
| !! | CTAATGGTGTTATGGGATCA+AGG | - | chr8_3:7154655-7154674 | Msa1273430:intron | 40.0% |
| GAAGAAACTGAAGTTCGCAA+AGG | + | chr8_3:7154755-7154774 | None:intergenic | 40.0% | |
| !!! | CATATGTTTTCAGGTGTCTC+TGG | - | chr8_3:7154809-7154828 | Msa1273430:intron | 40.0% |
| GAGTGATTTCGTAAACCTCT+AGG | - | chr8_3:7154847-7154866 | Msa1273430:intron | 40.0% | |
| GCAACGAGGGAATAGAAAAA+TGG | + | chr8_3:7155008-7155027 | None:intergenic | 40.0% | |
| AGATTCCTGAACATCGCAAA+TGG | - | chr8_3:7155247-7155266 | Msa1273430:intron | 40.0% | |
| CTGTTCTGATGTATGCATCT+TGG | - | chr8_3:7155445-7155464 | Msa1273430:intron | 40.0% | |
| ! | GGTATAGAGGATCAAGTTGT+CGG | - | chr8_3:7155577-7155596 | Msa1273430:intron | 40.0% |
| GTTGTCGGAAGTTCTTTGAA+TGG | - | chr8_3:7155592-7155611 | Msa1273430:intron | 40.0% | |
| ! | GTTTTGTGATGACTTTTGGG+AGG | - | chr8_3:7155614-7155633 | Msa1273430:intron | 40.0% |
| AACCCAATTGCTATGCTCAT+AGG | - | chr8_3:7155795-7155814 | Msa1273430:intron | 40.0% | |
| CTTTGTTAGCGGAGAGAAAA+GGG | + | chr8_3:7155829-7155848 | None:intergenic | 40.0% | |
| TCTTTGTTAGCGGAGAGAAA+AGG | + | chr8_3:7155830-7155849 | None:intergenic | 40.0% | |
| GCATAGGGTTTCTTTGTTAG+CGG | + | chr8_3:7155840-7155859 | None:intergenic | 40.0% | |
| CAAAGAAACCCTATGCTCAT+AGG | - | chr8_3:7155844-7155863 | Msa1273430:intron | 40.0% | |
| AGGCTTAACTCATGTAGGAA+GGG | + | chr8_3:7155878-7155897 | None:intergenic | 40.0% | |
| AAGGCTTAACTCATGTAGGA+AGG | + | chr8_3:7155879-7155898 | None:intergenic | 40.0% | |
| TCCATGCAGTCTGTTCATAA+AGG | - | chr8_3:7156148-7156167 | Msa1273430:intron | 40.0% | |
| TCCTTTATGAACAGACTGCA+TGG | + | chr8_3:7156152-7156171 | None:intergenic | 40.0% | |
| AGGGTTGCACAAAAGTTTGT+AGG | - | chr8_3:7156242-7156261 | Msa1273430:intron | 40.0% | |
| GCAGCAACTTTAAACACCAA+AGG | + | chr8_3:7156315-7156334 | None:intergenic | 40.0% | |
| ! | GGTGTTTAAAGTTGCTGCTA+TGG | - | chr8_3:7156317-7156336 | Msa1273430:intron | 40.0% |
| !! | ATTGGAACCATCGATTCGGT+AGG | + | chr8_3:7152932-7152951 | None:intergenic | 45.0% |
| GAAAACATTGGTCCGAAAGG+GGG | + | chr8_3:7153162-7153181 | None:intergenic | 45.0% | |
| !! | TCCATCAAAGGAAGTTGGTG+TGG | - | chr8_3:7153191-7153210 | Msa1273430:intron | 45.0% |
| ACCACACCAACTTCCTTTGA+TGG | + | chr8_3:7153195-7153214 | None:intergenic | 45.0% | |
| TTGACCCCTTTGTGCTTTGT+TGG | - | chr8_3:7153541-7153560 | Msa1273430:intron | 45.0% | |
| ! | TGACCCCTTTGTGCTTTGTT+GGG | - | chr8_3:7153542-7153561 | Msa1273430:intron | 45.0% |
| AACCCCAACAAAGCACAAAG+GGG | + | chr8_3:7153548-7153567 | None:intergenic | 45.0% | |
| GAACCCCAACAAAGCACAAA+GGG | + | chr8_3:7153549-7153568 | None:intergenic | 45.0% | |
| GGAGGAAAAGTAGAAGTTGG+AGG | - | chr8_3:7153588-7153607 | Msa1273430:intron | 45.0% | |
| AAGTAGAAGTTGGAGGCTTG+GGG | - | chr8_3:7153595-7153614 | Msa1273430:intron | 45.0% | |
| ATGCACACATACTGTGCACT+CGG | - | chr8_3:7153707-7153726 | Msa1273430:intron | 45.0% | |
| GCCGACATAGGAGACAATAT+TGG | - | chr8_3:7154331-7154350 | Msa1273430:intron | 45.0% | |
| GTGAAACCTACTTGTCTCAG+TGG | + | chr8_3:7154532-7154551 | None:intergenic | 45.0% | |
| ! | GTCCGTGCTTTATTGGCTAA+TGG | - | chr8_3:7154639-7154658 | Msa1273430:intron | 45.0% |
| TCCTGAACATCGCAAATGGA+TGG | - | chr8_3:7155251-7155270 | Msa1273430:intron | 45.0% | |
| TCCATCCATTTGCGATGTTC+AGG | + | chr8_3:7155255-7155274 | None:intergenic | 45.0% | |
| !! | ATGGTGCTGATCTATTGACG+AGG | - | chr8_3:7156222-7156241 | Msa1273430:intron | 45.0% |
| !! | TGGTGCTGATCTATTGACGA+GGG | - | chr8_3:7156223-7156242 | Msa1273430:intron | 45.0% |
| TTGCTGCTATGGTAACAACG+AGG | - | chr8_3:7156328-7156347 | Msa1273430:intron | 45.0% | |
| ATCGATGCCTACCGAATCGA+TGG | - | chr8_3:7152922-7152941 | Msa1273430:three_prime_UTR | 50.0% | |
| !! | TTGTTGGCTTCACCCCCTTT+CGG | - | chr8_3:7153147-7153166 | Msa1273430:CDS | 50.0% |
| ! | GACCCCTTTGTGCTTTGTTG+GGG | - | chr8_3:7153543-7153562 | Msa1273430:intron | 50.0% |
| GGAACCCCAACAAAGCACAA+AGG | + | chr8_3:7153550-7153569 | None:intergenic | 50.0% | |
| GCCCTTAGGGTCAAAAAGGA+AGG | - | chr8_3:7153729-7153748 | Msa1273430:CDS | 50.0% | |
| ATCTAACGCGTTGCCGACAT+AGG | - | chr8_3:7154319-7154338 | Msa1273430:intron | 50.0% | |
| !! | TGATGACTTTTGGGAGGCAC+AGG | - | chr8_3:7155620-7155639 | Msa1273430:intron | 50.0% |
| CTGCTATGGTAACAACGAGG+TGG | - | chr8_3:7156331-7156350 | Msa1273430:intron | 50.0% | |
| ATACTGTGCACTCGGCCCTT+AGG | - | chr8_3:7153715-7153734 | Msa1273430:intron | 55.0% | |
| TACTGTGCACTCGGCCCTTA+GGG | - | chr8_3:7153716-7153735 | Msa1273430:intron | 55.0% | |
| CTCGGCCCTTAGGGTCAAAA+AGG | - | chr8_3:7153725-7153744 | Msa1273430:CDS | 55.0% | |
| ! | TGGAGGCTTGGGGCATCAAG+AGG | - | chr8_3:7153605-7153624 | Msa1273430:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 7152825 | 7156541 | 7152825 | ID=Msa1273430;Name=Msa1273430 |
| chr8_3 | mRNA | 7152825 | 7156541 | 7152825 | ID=Msa1273430-mRNA-1;Parent=Msa1273430;Name=Msa1273430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=72|0.33|0.75|1|0.66|0.75|4|216|138 |
| chr8_3 | exon | 7152825 | 7153209 | 7152825 | ID=Msa1273430-mRNA-1:exon:2791;Parent=Msa1273430-mRNA-1 |
| chr8_3 | exon | 7153725 | 7153859 | 7153725 | ID=Msa1273430-mRNA-1:exon:2790;Parent=Msa1273430-mRNA-1 |
| chr8_3 | exon | 7154510 | 7154544 | 7154510 | ID=Msa1273430-mRNA-1:exon:2789;Parent=Msa1273430-mRNA-1 |
| chr8_3 | exon | 7156392 | 7156541 | 7156392 | ID=Msa1273430-mRNA-1:exon:2788;Parent=Msa1273430-mRNA-1 |
| chr8_3 | five_prime_UTR | 7156470 | 7156541 | 7156470 | ID=Msa1273430-mRNA-1:five_prime_utr;Parent=Msa1273430-mRNA-1 |
| chr8_3 | CDS | 7156392 | 7156469 | 7156392 | ID=Msa1273430-mRNA-1:cds;Parent=Msa1273430-mRNA-1 |
| chr8_3 | CDS | 7154510 | 7154544 | 7154510 | ID=Msa1273430-mRNA-1:cds;Parent=Msa1273430-mRNA-1 |
| chr8_3 | CDS | 7153725 | 7153859 | 7153725 | ID=Msa1273430-mRNA-1:cds;Parent=Msa1273430-mRNA-1 |
| chr8_3 | CDS | 7153041 | 7153209 | 7153041 | ID=Msa1273430-mRNA-1:cds;Parent=Msa1273430-mRNA-1 |
| chr8_3 | three_prime_UTR | 7152825 | 7153040 | 7152825 | ID=Msa1273430-mRNA-1:three_prime_utr;Parent=Msa1273430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
