Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366970 | RHN67914.1 | 68.768 | 682 | 170 | 10 | 1 | 664 | 1231 | 1887 | 0.0 | 865 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366970 | A0A396IU65 | 68.768 | 682 | 170 | 10 | 1 | 664 | 1231 | 1887 | 0.0 | 865 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0366970 | 0.805652 | 1.203981e-49 | -8.615850e-47 |
| Msa0017510 | Msa0366970 | 0.817782 | 2.758267e-52 | -8.615850e-47 |
| Msa0040450 | Msa0366970 | 0.809515 | 1.821677e-50 | -8.615850e-47 |
| Msa0073530 | Msa0366970 | 0.807656 | 4.544116e-50 | -8.615850e-47 |
| Msa0116770 | Msa0366970 | 0.820383 | 7.061783e-53 | -8.615850e-47 |
| Msa0157290 | Msa0366970 | 0.816429 | 5.554592e-52 | -8.615850e-47 |
| Msa0165210 | Msa0366970 | 0.805306 | 1.422766e-49 | -8.615850e-47 |
| Msa0165220 | Msa0366970 | 0.817553 | 3.106143e-52 | -8.615850e-47 |
| Msa0201070 | Msa0366970 | 0.816634 | 4.998547e-52 | -8.615850e-47 |
| Msa0212990 | Msa0366970 | 0.801330 | 9.476440e-49 | -8.615850e-47 |
| Msa0220580 | Msa0366970 | 0.806865 | 6.684426e-50 | -8.615850e-47 |
| Msa0366970 | Msa0432300 | 0.818588 | 1.812717e-52 | -8.615850e-47 |
| Msa0366970 | Msa0458090 | 0.818308 | 2.097313e-52 | -8.615850e-47 |
| Msa0366970 | Msa0476110 | 0.801521 | 8.658565e-49 | -8.615850e-47 |
| Msa0366970 | Msa0484780 | 0.823686 | 1.211687e-53 | -8.615850e-47 |
| Msa0366970 | Msa0497780 | 0.800273 | 1.557468e-48 | -8.615850e-47 |
| Msa0366970 | Msa0502890 | 0.806032 | 1.001677e-49 | -8.615850e-47 |
| Msa0366970 | Msa0507680 | 0.808129 | 3.604525e-50 | -8.615850e-47 |
| Msa0366970 | Msa0512900 | 0.803749 | 3.004740e-49 | -8.615850e-47 |
| Msa0366970 | Msa0533070 | 0.804684 | 1.919837e-49 | -8.615850e-47 |
| Msa0366970 | Msa0558690 | 0.804505 | 2.091751e-49 | -8.615850e-47 |
| Msa0366970 | Msa0567020 | 0.806254 | 8.993820e-50 | -8.615850e-47 |
| Msa0366970 | Msa0593650 | 0.812710 | 3.696005e-51 | -8.615850e-47 |
| Msa0366970 | Msa0657970 | 0.837727 | 4.383143e-57 | -8.615850e-47 |
| Msa0366970 | Msa0658570 | 0.804141 | 2.491097e-49 | -8.615850e-47 |
| Msa0366970 | Msa0689800 | 0.825031 | 5.850832e-54 | -8.615850e-47 |
| Msa0366970 | Msa0693380 | 0.852734 | 3.801456e-61 | -8.615850e-47 |
| Msa0366970 | Msa0703490 | 0.805778 | 1.132453e-49 | -8.615850e-47 |
| Msa0366970 | Msa0716530 | 0.800993 | 1.110220e-48 | -8.615850e-47 |
| Msa0366970 | Msa0759410 | 0.836542 | 8.803975e-57 | -8.615850e-47 |
| Msa0366970 | Msa0777790 | 0.808797 | 2.595823e-50 | -8.615850e-47 |
| Msa0366970 | Msa0777850 | 0.811691 | 6.169799e-51 | -8.615850e-47 |
| Msa0366970 | Msa0844240 | 0.817609 | 3.017536e-52 | -8.615850e-47 |
| Msa0366970 | Msa0880140 | 0.815726 | 7.974605e-52 | -8.615850e-47 |
| Msa0366970 | Msa0907070 | 0.813544 | 2.426193e-51 | -8.615850e-47 |
| Msa0366970 | Msa0909120 | 0.832820 | 7.600048e-56 | -8.615850e-47 |
| Msa0366970 | Msa0909140 | 0.805599 | 1.235050e-49 | -8.615850e-47 |
| Msa0366970 | Msa0953550 | 0.802927 | 4.447542e-49 | -8.615850e-47 |
| Msa0366970 | Msa0954550 | 0.805931 | 1.051937e-49 | -8.615850e-47 |
| Msa0366970 | Msa1014540 | 0.814145 | 1.788082e-51 | -8.615850e-47 |
| Msa0366970 | Msa1082500 | 0.844196 | 8.780770e-59 | -8.615850e-47 |
| Msa0366970 | Msa1085300 | 0.829079 | 6.289548e-55 | -8.615850e-47 |
| Msa0366970 | Msa1195920 | 0.829342 | 5.432868e-55 | -8.615850e-47 |
| Msa0366970 | Msa1228590 | 0.802264 | 6.093004e-49 | -8.615850e-47 |
| Msa0366970 | Msa1238470 | 0.800243 | 1.578809e-48 | -8.615850e-47 |
| Msa0366970 | Msa1238930 | 0.800099 | 1.689656e-48 | -8.615850e-47 |
| Msa0366970 | Msa1273430 | 0.803990 | 2.677027e-49 | -8.615850e-47 |
| Msa0366970 | Msa1283860 | 0.825760 | 3.932025e-54 | -8.615850e-47 |
| Msa0366970 | Msa1291660 | 0.826020 | 3.410400e-54 | -8.615850e-47 |
| Msa0366970 | Msa1299070 | 0.809907 | 1.499976e-50 | -8.615850e-47 |
| Msa0366970 | Msa1319650 | 0.809459 | 1.872290e-50 | -8.615850e-47 |
| Msa0366970 | Msa1322890 | 0.814736 | 1.323723e-51 | -8.615850e-47 |
| Msa0366970 | Msa1324780 | 0.826232 | 3.037084e-54 | -8.615850e-47 |
| Msa0366970 | Msa1373030 | 0.804965 | 1.676391e-49 | -8.615850e-47 |
| Msa0366970 | Msa1376890 | 0.802662 | 5.044686e-49 | -8.615850e-47 |
| Msa0366970 | Msa1378760 | 0.804266 | 2.345562e-49 | -8.615850e-47 |
| Msa0366970 | Msa1438970 | 0.808455 | 3.071002e-50 | -8.615850e-47 |
| Msa0366970 | Msa1460240 | 0.813737 | 2.199486e-51 | -8.615850e-47 |
| Msa0243710 | Msa0366970 | 0.813951 | 1.973327e-51 | -8.615850e-47 |
| Msa0258760 | Msa0366970 | 0.800922 | 1.148089e-48 | -8.615850e-47 |
| Msa0288100 | Msa0366970 | 0.820850 | 5.515169e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366970 | MtrunA17_Chr3g0107931 | 68.768 | 682 | 170 | 10 | 1 | 664 | 1231 | 1887 | 0.0 | 865 |
| Msa0366970 | MtrunA17_Chr3g0091861 | 56.283 | 748 | 198 | 15 | 1 | 655 | 1153 | 1864 | 0.0 | 711 |
| Msa0366970 | MtrunA17_Chr3g0108821 | 55.474 | 685 | 198 | 19 | 2 | 664 | 1203 | 1802 | 0.0 | 608 |
| Msa0366970 | MtrunA17_Chr3g0108071 | 49.271 | 686 | 219 | 13 | 1 | 634 | 353 | 961 | 0.0 | 543 |
| Msa0366970 | MtrunA17_Chr3g0108811 | 44.515 | 793 | 224 | 21 | 2 | 664 | 1224 | 1930 | 1.57e-159 | 504 |
| Msa0366970 | MtrunA17_Chr3g0105521 | 47.774 | 674 | 224 | 16 | 28 | 664 | 1023 | 1605 | 1.31e-156 | 491 |
| Msa0366970 | MtrunA17_Chr3g0105521 | 31.081 | 148 | 89 | 4 | 58 | 196 | 684 | 827 | 5.91e-11 | 66.2 |
| Msa0366970 | MtrunA17_Chr3g0108171 | 50.082 | 613 | 142 | 14 | 1 | 508 | 1073 | 1626 | 6.80e-153 | 486 |
| Msa0366970 | MtrunA17_Chr3g0108171 | 58.654 | 416 | 65 | 7 | 298 | 664 | 1610 | 1967 | 1.06e-123 | 404 |
| Msa0366970 | MtrunA17_Chr3g0108111 | 65.768 | 371 | 111 | 8 | 1 | 361 | 154 | 518 | 3.99e-148 | 443 |
| Msa0366970 | MtrunA17_Chr3g0108091 | 45.115 | 563 | 190 | 11 | 124 | 634 | 3 | 498 | 1.15e-129 | 392 |
| Msa0366970 | MtrunA17_Chr3g0108011 | 53.653 | 479 | 119 | 8 | 2 | 414 | 1241 | 1682 | 1.32e-126 | 411 |
| Msa0366970 | MtrunA17_Chr3g0107261 | 55.838 | 394 | 99 | 6 | 346 | 664 | 6 | 399 | 5.01e-124 | 374 |
| Msa0366970 | MtrunA17_Chr3g0087641 | 66.775 | 307 | 55 | 5 | 322 | 607 | 66 | 346 | 9.47e-123 | 368 |
| Msa0366970 | MtrunA17_Chr3g0097011 | 53.472 | 432 | 91 | 13 | 297 | 664 | 12 | 397 | 4.80e-117 | 355 |
| Msa0366970 | MtrunA17_Chr3g0108151 | 79.832 | 238 | 47 | 1 | 1 | 237 | 976 | 1213 | 9.68e-115 | 376 |
| Msa0366970 | MtrunA17_Chr3g0108151 | 54.908 | 326 | 95 | 7 | 354 | 664 | 1255 | 1543 | 3.37e-85 | 293 |
| Msa0366970 | MtrunA17_Chr3g0105591 | 48.584 | 459 | 161 | 12 | 243 | 664 | 15 | 435 | 6.69e-109 | 336 |
| Msa0366970 | MtrunA17_Chr3g0107271 | 68.145 | 248 | 71 | 5 | 1 | 247 | 9 | 249 | 1.02e-104 | 318 |
| Msa0366970 | MtrunA17_Chr3g0105551 | 48.438 | 448 | 167 | 11 | 255 | 664 | 1443 | 1864 | 1.45e-97 | 329 |
| Msa0366970 | MtrunA17_Chr3g0105551 | 51.351 | 259 | 94 | 6 | 28 | 270 | 1141 | 1383 | 3.66e-65 | 234 |
| Msa0366970 | MtrunA17_Chr3g0105551 | 29.949 | 197 | 123 | 5 | 8 | 196 | 756 | 945 | 1.95e-11 | 67.8 |
| Msa0366970 | MtrunA17_Chr3g0097601 | 65.315 | 222 | 76 | 1 | 2 | 223 | 11 | 231 | 1.88e-90 | 282 |
| Msa0366970 | MtrunA17_Chr3g0107641 | 74.737 | 190 | 47 | 1 | 475 | 664 | 4 | 192 | 1.97e-87 | 271 |
| Msa0366970 | MtrunA17_Chr3g0105481 | 42.572 | 451 | 153 | 10 | 28 | 460 | 1055 | 1417 | 3.49e-84 | 290 |
| Msa0366970 | MtrunA17_Chr2g0304131 | 55.597 | 268 | 86 | 3 | 430 | 664 | 48 | 315 | 5.10e-84 | 267 |
| Msa0366970 | MtrunA17_Chr3g0091851 | 62.083 | 240 | 62 | 3 | 439 | 664 | 1091 | 1315 | 2.18e-81 | 281 |
| Msa0366970 | MtrunA17_Chr3g0108761 | 67.708 | 192 | 48 | 1 | 473 | 664 | 3 | 180 | 5.88e-81 | 254 |
| Msa0366970 | MtrunA17_Chr3g0105471 | 56.693 | 254 | 83 | 3 | 430 | 664 | 1 | 246 | 1.68e-80 | 255 |
| Msa0366970 | MtrunA17_Chr3g0107171 | 45.536 | 336 | 107 | 9 | 349 | 664 | 104 | 383 | 5.70e-71 | 235 |
| Msa0366970 | MtrunA17_Chr3g0105601 | 51.406 | 249 | 103 | 4 | 4 | 239 | 238 | 481 | 1.27e-69 | 235 |
| Msa0366970 | MtrunA17_Chr3g0096701 | 45.098 | 357 | 156 | 10 | 63 | 409 | 39 | 365 | 3.44e-69 | 240 |
| Msa0366970 | MtrunA17_Chr3g0105501 | 57.949 | 195 | 66 | 5 | 35 | 224 | 1 | 184 | 1.27e-60 | 201 |
| Msa0366970 | MtrunA17_Chr3g0096771 | 48.988 | 247 | 77 | 4 | 444 | 664 | 66 | 289 | 3.45e-58 | 198 |
| Msa0366970 | MtrunA17_Chr3g0107081 | 54.124 | 194 | 74 | 3 | 58 | 251 | 29 | 207 | 5.08e-56 | 189 |
| Msa0366970 | MtrunA17_Chr2g0288311 | 64.881 | 168 | 29 | 4 | 75 | 240 | 30 | 169 | 2.69e-54 | 183 |
| Msa0366970 | MtrunA17_Chr7g0223911 | 65.942 | 138 | 40 | 1 | 527 | 664 | 30 | 160 | 2.80e-53 | 180 |
| Msa0366970 | MtrunA17_Chr7g0229711 | 53.416 | 161 | 52 | 3 | 492 | 652 | 2 | 139 | 1.32e-41 | 147 |
| Msa0366970 | MtrunA17_Chr3g0107201 | 37.209 | 344 | 147 | 12 | 141 | 474 | 2 | 286 | 4.40e-39 | 153 |
| Msa0366970 | MtrunA17_Chr1g0160951 | 35.019 | 257 | 155 | 6 | 5 | 254 | 1005 | 1256 | 1.66e-38 | 153 |
| Msa0366970 | MtrunA17_Chr3g0112521 | 88.732 | 71 | 8 | 0 | 579 | 649 | 6 | 76 | 1.56e-35 | 128 |
| Msa0366970 | MtrunA17_Chr3g0096801 | 48.428 | 159 | 59 | 4 | 141 | 297 | 2 | 139 | 4.36e-33 | 124 |
| Msa0366970 | MtrunA17_Chr3g0109131 | 76.316 | 76 | 18 | 0 | 589 | 664 | 97 | 172 | 6.62e-30 | 116 |
| Msa0366970 | MtrunA17_Chr5g0439121 | 31.085 | 341 | 196 | 14 | 18 | 347 | 1302 | 1614 | 4.06e-28 | 121 |
| Msa0366970 | MtrunA17_Chr5g0439121 | 31.977 | 172 | 104 | 4 | 14 | 179 | 978 | 1142 | 1.25e-12 | 71.6 |
| Msa0366970 | MtrunA17_Chr3g0100241 | 36.898 | 187 | 103 | 7 | 33 | 208 | 8 | 190 | 9.28e-24 | 100 |
| Msa0366970 | MtrunA17_Chr5g0443761 | 29.707 | 239 | 151 | 5 | 10 | 234 | 866 | 1101 | 1.04e-21 | 100 |
| Msa0366970 | MtrunA17_Chr3g0106021 | 56.410 | 78 | 34 | 0 | 1 | 78 | 310 | 387 | 3.61e-20 | 93.2 |
| Msa0366970 | MtrunA17_Chr3g0100261 | 35.556 | 180 | 100 | 4 | 41 | 208 | 1033 | 1208 | 5.10e-20 | 95.5 |
| Msa0366970 | MtrunA17_Chr8g0360991 | 32.530 | 166 | 101 | 3 | 57 | 217 | 1047 | 1206 | 1.02e-19 | 94.4 |
| Msa0366970 | MtrunA17_Chr3g0099591 | 35.227 | 176 | 97 | 7 | 31 | 196 | 1018 | 1186 | 5.00e-19 | 92.0 |
| Msa0366970 | MtrunA17_Chr3g0105491 | 52.500 | 80 | 24 | 2 | 592 | 664 | 1 | 73 | 5.53e-15 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAATTGTTTGACTATT+TGG | 0.126221 | 3_1:+62370952 | Msa0366970:CDS |
| AAATGCATTGCAAAAGATAT+TGG | 0.248077 | 3_1:+62372851 | Msa0366970:CDS |
| TGAAGATTTATGTTCTTCTT+TGG | 0.269961 | 3_1:+62372506 | Msa0366970:CDS |
| AATATTACAACTTTCAGATT+TGG | 0.275031 | 3_1:-62370474 | None:intergenic |
| ATTCTTCGCTGTTTCTAAAA+TGG | 0.302413 | 3_1:-62371624 | None:intergenic |
| CAGCTTGAAATTGAATTCTC+TGG | 0.310331 | 3_1:-62370524 | None:intergenic |
| CAATTCGAGTAATCTTAATA+TGG | 0.311873 | 3_1:-62373168 | None:intergenic |
| TCCATCTTTGGAAAGTCTTC+AGG | 0.319408 | 3_1:+62369951 | Msa0366970:CDS |
| TCAGCACCTTGTTCATCATT+AGG | 0.340219 | 3_1:+62371837 | Msa0366970:CDS |
| CTAACACATCCAACACACTA+TGG | 0.343716 | 3_1:-62372710 | None:intergenic |
| AGTTCATGATCTGTCTTTGC+TGG | 0.344423 | 3_1:-62371221 | None:intergenic |
| CTCAGGAAGTTCTTTACATA+TGG | 0.355099 | 3_1:-62370370 | None:intergenic |
| GGAGAAGTCAGCTCGTATTC+TGG | 0.361285 | 3_1:-62371088 | None:intergenic |
| GAACTTGTTGAAAATGTTCC+TGG | 0.365456 | 3_1:+62371239 | Msa0366970:CDS |
| AGCTTTGAAAGACATTGATT+TGG | 0.370240 | 3_1:+62370038 | Msa0366970:CDS |
| TTTAATTTATATCTTAAATT+CGG | 0.375505 | 3_1:+62370624 | Msa0366970:CDS |
| GCATGTTATTGAAGATGATT+TGG | 0.381284 | 3_1:+62370239 | Msa0366970:CDS |
| TAGCTCAGCTAGACAGTTGT+AGG | 0.394123 | 3_1:-62372670 | None:intergenic |
| AGTTCTTTACATATGGAGAT+TGG | 0.396868 | 3_1:-62370363 | None:intergenic |
| ACCTGAAGACTTTCCAAAGA+TGG | 0.399501 | 3_1:-62369952 | None:intergenic |
| TTAGGAGAAACTAAATGTAT+AGG | 0.406058 | 3_1:-62371653 | None:intergenic |
| ATACCTTCAGAAGGCTTTGA+AGG | 0.406731 | 3_1:-62372397 | None:intergenic |
| CCTTTCATGCTTGAAAATCA+AGG | 0.408133 | 3_1:+62370122 | Msa0366970:CDS |
| TTCACCTTCATCATCATTAG+TGG | 0.413717 | 3_1:-62372210 | None:intergenic |
| ACAAAAGATATCTTCTACAT+TGG | 0.415179 | 3_1:-62369983 | None:intergenic |
| ACGCATCTCTTCAACTTCCT+TGG | 0.421771 | 3_1:-62372892 | None:intergenic |
| TGTTGTAGACATAAAATTTG+AGG | 0.426586 | 3_1:-62370274 | None:intergenic |
| CTTCCTTGGTTACACACTGC+TGG | 0.430227 | 3_1:-62372878 | None:intergenic |
| TTTAGTTTCTCCTAAACAAA+AGG | 0.439656 | 3_1:+62371661 | Msa0366970:CDS |
| GATGTGGTTTCGATAAAGAT+TGG | 0.440119 | 3_1:+62372778 | Msa0366970:CDS |
| CATCCAACACACTATGGGTT+TGG | 0.445633 | 3_1:-62372704 | None:intergenic |
| ATCATTAAAACCTGTAGCTC+AGG | 0.451067 | 3_1:-62370387 | None:intergenic |
| TAAAGAACTTCCTGAGCTAC+AGG | 0.454338 | 3_1:+62370377 | Msa0366970:CDS |
| AGCTTGAAATTGAATTCTCT+GGG | 0.456655 | 3_1:-62370523 | None:intergenic |
| TAAGATTACTCGAATTGTAA+TGG | 0.459780 | 3_1:+62373174 | Msa0366970:three_prime_UTR |
| TGCTACCGTCAAACCTTCTC+AGG | 0.465275 | 3_1:+62371416 | Msa0366970:CDS |
| ATCAATGTCTTTCAAAGCTA+AGG | 0.466646 | 3_1:-62370034 | None:intergenic |
| CATAGTGTGTTGGATGTGTT+AGG | 0.467513 | 3_1:+62372711 | Msa0366970:CDS |
| TTCTTCTTTGGTTGTCACAA+GGG | 0.470736 | 3_1:+62372518 | Msa0366970:CDS |
| GTGTCCCATAAAAGAATTGA+AGG | 0.479716 | 3_1:-62372618 | None:intergenic |
| AGGTGCTGAAGTTTCTGTCT+TGG | 0.488437 | 3_1:-62371823 | None:intergenic |
| GATAAGTGAAGCAGATGGGT+TGG | 0.489341 | 3_1:+62370407 | Msa0366970:CDS |
| TATCTTAAATTCGGTTCTAC+CGG | 0.491689 | 3_1:+62370633 | Msa0366970:CDS |
| TTGATTGTTGTATTAAACAA+AGG | 0.497565 | 3_1:+62373140 | Msa0366970:three_prime_UTR |
| GAGACTCTCTAAAACAGCTT+CGG | 0.499626 | 3_1:-62372973 | None:intergenic |
| TCTTGAGTTATCTCTATGCC+AGG | 0.500501 | 3_1:-62371257 | None:intergenic |
| TTCCTTGGTTACACACTGCT+GGG | 0.501249 | 3_1:-62372877 | None:intergenic |
| ATCTGAGATGCAATAGAAAA+CGG | 0.501315 | 3_1:-62372373 | None:intergenic |
| GTTCTTCTTTGGTTGTCACA+AGG | 0.504198 | 3_1:+62372517 | Msa0366970:CDS |
| GCTGCTTTAAGTGCCCCTCT+TGG | 0.505217 | 3_1:+62373029 | Msa0366970:CDS |
| TGTCTTGGCATTAGCAGATG+TGG | 0.507157 | 3_1:-62371808 | None:intergenic |
| ATTACATTATATTCCTGAGA+AGG | 0.509639 | 3_1:-62371429 | None:intergenic |
| CTTTCATGCTTGAAAATCAA+GGG | 0.513889 | 3_1:+62370123 | Msa0366970:CDS |
| AAGAGCAAAGGCCACGATAG+TGG | 0.518465 | 3_1:+62371001 | Msa0366970:CDS |
| AAGTGAAGCAGATGGGTTGG+AGG | 0.524347 | 3_1:+62370410 | Msa0366970:CDS |
| GAAATTAAGCTCGAATATTG+AGG | 0.526699 | 3_1:+62372348 | Msa0366970:CDS |
| CTCTGGGCATGACTGAGGCT+TGG | 0.527396 | 3_1:-62370507 | None:intergenic |
| TTCGATAAAGATTGGTTGGA+TGG | 0.530095 | 3_1:+62372786 | Msa0366970:CDS |
| TGGTTTCGATAAAGATTGGT+TGG | 0.531340 | 3_1:+62372782 | Msa0366970:CDS |
| CTGTAAAACATCGTTTCATA+CGG | 0.531875 | 3_1:+62370544 | Msa0366970:CDS |
| TAATGATAAGTGAAGCAGAT+GGG | 0.535725 | 3_1:+62370403 | Msa0366970:CDS |
| CCAACACACTATGGGTTTGG+AGG | 0.537807 | 3_1:-62372701 | None:intergenic |
| AGATAGTCTAATAGCCAAGA+GGG | 0.546488 | 3_1:-62373043 | None:intergenic |
| TTACAAGATGTTCGCAGATG+TGG | 0.549714 | 3_1:+62372762 | Msa0366970:CDS |
| ATTTATTGTAGGAATTGAGT+GGG | 0.551845 | 3_1:+62369914 | None:intergenic |
| CATTTATTGTAGGAATTGAG+TGG | 0.552816 | 3_1:+62369913 | None:intergenic |
| TAACACATCCAACACACTAT+GGG | 0.560461 | 3_1:-62372709 | None:intergenic |
| ATAAATGAACAACCTCCACT+TGG | 0.563229 | 3_1:+62371384 | Msa0366970:CDS |
| AACAATAAAATACCTTCAGA+AGG | 0.567414 | 3_1:-62372406 | None:intergenic |
| GAGGAAATATTTGTAAGTGA+AGG | 0.573682 | 3_1:+62370429 | Msa0366970:CDS |
| ATATTCCTGAGAAGGTTTGA+CGG | 0.576725 | 3_1:-62371421 | None:intergenic |
| GTCGAAATAAGTGTTGAAGA+AGG | 0.579126 | 3_1:+62371783 | Msa0366970:CDS |
| ATTCCTTCAAAGCCTTCTGA+AGG | 0.579968 | 3_1:+62372394 | Msa0366970:CDS |
| GTAGGAATTGAGTGGGAATG+TGG | 0.582830 | 3_1:+62369921 | None:intergenic |
| TAAAGATTGGTTGGATGGTG+TGG | 0.583005 | 3_1:+62372791 | Msa0366970:CDS |
| CAGACACCTTATTATAGAAG+TGG | 0.584589 | 3_1:-62370172 | None:intergenic |
| GAATTCTCTGGGCATGACTG+AGG | 0.590696 | 3_1:-62370512 | None:intergenic |
| AATAAGGTGTCTGCCACAGT+TGG | 0.600697 | 3_1:+62370182 | Msa0366970:CDS |
| TTAATGATAAGTGAAGCAGA+TGG | 0.607892 | 3_1:+62370402 | Msa0366970:CDS |
| CCTCCAAACCCATAGTGTGT+TGG | 0.615763 | 3_1:+62372701 | Msa0366970:CDS |
| GTTACCACTAATGATGATGA+AGG | 0.626003 | 3_1:+62372206 | Msa0366970:CDS |
| TTCGCTAAGTAATAGATACA+AGG | 0.626158 | 3_1:+62372641 | Msa0366970:CDS |
| TTCCCAGCAGTGTGTAACCA+AGG | 0.627301 | 3_1:+62372875 | Msa0366970:CDS |
| ATACGAGCTGACTTCTCCAA+AGG | 0.633211 | 3_1:+62371093 | Msa0366970:CDS |
| GCATCAATTTCTCCAAGTGG+AGG | 0.633259 | 3_1:-62371396 | None:intergenic |
| GAATTGAAGGATGCTTAACA+AGG | 0.637134 | 3_1:-62372605 | None:intergenic |
| CAATTACATGATAAGAGCAA+AGG | 0.645874 | 3_1:+62370989 | Msa0366970:CDS |
| ATTCTTATAGTAACCAACTG+TGG | 0.649769 | 3_1:-62370195 | None:intergenic |
| AAGATAGTCTAATAGCCAAG+AGG | 0.657497 | 3_1:-62373044 | None:intergenic |
| TGAAGGTGATGATCACAAAG+TGG | 0.660475 | 3_1:+62370446 | Msa0366970:CDS |
| GTAGCATCAATTTCTCCAAG+TGG | 0.660743 | 3_1:-62371399 | None:intergenic |
| AATTGACCTAATGATGAACA+AGG | 0.677754 | 3_1:-62371843 | None:intergenic |
| GATAGTCTAATAGCCAAGAG+GGG | 0.686239 | 3_1:-62373042 | None:intergenic |
| TACTTTGACTTCAAACCCAG+CGG | 0.689226 | 3_1:-62371062 | None:intergenic |
| ATCAACAGCAGACCTCAGAG+AGG | 0.733741 | 3_1:+62370596 | Msa0366970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAATAGTTTTAAAAATAT+TGG | - | chr3_1:62370671-62370690 | None:intergenic | 10.0% |
| !!! | TTTTTATTATTAAATTTCCA+TGG | + | chr3_1:62371942-62371961 | Msa0366970:intron | 10.0% |
| !!! | TTTTATTATTAAATTTCCAT+GGG | + | chr3_1:62371943-62371962 | Msa0366970:intron | 10.0% |
| !!! | TTTATATATATGAATTTTGT+AGG | + | chr3_1:62372151-62372170 | Msa0366970:intron | 10.0% |
| !!! | TTTTTAAAACTATTACATGT+TGG | + | chr3_1:62370674-62370693 | Msa0366970:intron | 15.0% |
| !!! | ATTGAATCTTTTAAAATGTT+AGG | + | chr3_1:62370804-62370823 | Msa0366970:intron | 15.0% |
| !!! | TTTTAAAATGTTAGGTAAAA+TGG | + | chr3_1:62370812-62370831 | Msa0366970:intron | 15.0% |
| !! | ATGGTAAAACTTTAATTATT+AGG | + | chr3_1:62370831-62370850 | Msa0366970:intron | 15.0% |
| !! | AATATTACAACTTTCAGATT+TGG | - | chr3_1:62370477-62370496 | None:intergenic | 20.0% |
| !! | ATTTATATCCTTTAACCAAA+TGG | - | chr3_1:62370750-62370769 | None:intergenic | 20.0% |
| !! | TTGATTCAAATACATTATGA+TGG | - | chr3_1:62371166-62371185 | None:intergenic | 20.0% |
| !! | TAAATCTTATACTATTGACA+TGG | - | chr3_1:62371296-62371315 | None:intergenic | 20.0% |
| !! | AATAAGAACATATTACTTAG+TGG | - | chr3_1:62371354-62371373 | None:intergenic | 20.0% |
| !! | AAAGAATACAAGAAAAATGA+GGG | - | chr3_1:62371693-62371712 | None:intergenic | 20.0% |
| !! | AAAAGAATACAAGAAAAATG+AGG | - | chr3_1:62371694-62371713 | None:intergenic | 20.0% |
| !!! | TTTTAACACTTTTTCAATGT+AGG | + | chr3_1:62371711-62371730 | Msa0366970:intron | 20.0% |
| !!! | ACATTCATTTAATTTTAAGC+AGG | + | chr3_1:62371758-62371777 | Msa0366970:intron | 20.0% |
| !!! | CATTCATTTAATTTTAAGCA+GGG | + | chr3_1:62371759-62371778 | Msa0366970:intron | 20.0% |
| !!! | AATCTTCATCTATTTTAGAA+GGG | - | chr3_1:62372494-62372513 | None:intergenic | 20.0% |
| !!! | AAATCTTCATCTATTTTAGA+AGG | - | chr3_1:62372495-62372514 | None:intergenic | 20.0% |
| !!! | ATAGTAGTTCTTTTTAAATG+CGG | - | chr3_1:62373097-62373116 | None:intergenic | 20.0% |
| !! | TTGATTGTTGTATTAAACAA+AGG | + | chr3_1:62373140-62373159 | Msa0366970:three_prime_UTR | 20.0% |
| ! | ACAAAAGATATCTTCTACAT+TGG | - | chr3_1:62369986-62370005 | None:intergenic | 25.0% |
| !! | TTTTCTCCACTTCTATAATA+AGG | + | chr3_1:62370166-62370185 | Msa0366970:CDS | 25.0% |
| ! | TGTTGTAGACATAAAATTTG+AGG | - | chr3_1:62370277-62370296 | None:intergenic | 25.0% |
| ! | AATTAAAAATATCCTCTCTG+AGG | - | chr3_1:62370611-62370630 | None:intergenic | 25.0% |
| ! | ATCAACAAAAACATACCATT+TGG | + | chr3_1:62370732-62370751 | Msa0366970:intron | 25.0% |
| ! | AAAACATACCATTTGGTTAA+AGG | + | chr3_1:62370739-62370758 | Msa0366970:intron | 25.0% |
| ! | TTCTGAATTGTTTGACTATT+TGG | + | chr3_1:62370952-62370971 | Msa0366970:CDS | 25.0% |
| !!! | GCAAATTTTTTAGAGGTTTT+TGG | - | chr3_1:62371043-62371062 | None:intergenic | 25.0% |
| ! | AAGTAATATGTTCTTATTGC+AGG | + | chr3_1:62371356-62371375 | Msa0366970:intron | 25.0% |
| ! | ATTACATTATATTCCTGAGA+AGG | - | chr3_1:62371432-62371451 | None:intergenic | 25.0% |
| !! | TTTCTTTTTATGCAATCAGT+TGG | + | chr3_1:62371559-62371578 | Msa0366970:intron | 25.0% |
| ! | TTAGGAGAAACTAAATGTAT+AGG | - | chr3_1:62371656-62371675 | None:intergenic | 25.0% |
| !! | TTTAGTTTCTCCTAAACAAA+AGG | + | chr3_1:62371661-62371680 | Msa0366970:CDS | 25.0% |
| ! | AAGAATACAAGAAAAATGAG+GGG | - | chr3_1:62371692-62371711 | None:intergenic | 25.0% |
| ! | TAATGAAGTAAGCTTATTTC+AGG | + | chr3_1:62372055-62372074 | Msa0366970:intron | 25.0% |
| !! | ATATGAATTTTGTAGGAAGA+TGG | + | chr3_1:62372158-62372177 | Msa0366970:intron | 25.0% |
| ! | ATTTAGAGAAACTGAACAAA+AGG | - | chr3_1:62372314-62372333 | None:intergenic | 25.0% |
| ! | AACAATAAAATACCTTCAGA+AGG | - | chr3_1:62372409-62372428 | None:intergenic | 25.0% |
| ! | TAATTATGCATATTTGAGCA+AGG | - | chr3_1:62372448-62372467 | None:intergenic | 25.0% |
| ! | TTATACTTTCCTATACTTTC+AGG | + | chr3_1:62372465-62372484 | Msa0366970:intron | 25.0% |
| ! | TGAAGATTTATGTTCTTCTT+TGG | + | chr3_1:62372506-62372525 | Msa0366970:CDS | 25.0% |
| ! | ATAACTCAAAAAATTCAGAC+TGG | - | chr3_1:62372743-62372762 | None:intergenic | 25.0% |
| !!! | TTTTGAGAGAATTGTAAATC+AGG | - | chr3_1:62372834-62372853 | None:intergenic | 25.0% |
| ! | AAATGCATTGCAAAAGATAT+TGG | + | chr3_1:62372851-62372870 | Msa0366970:CDS | 25.0% |
| !! | AAACATTTTGAATCAACATG+TGG | + | chr3_1:62372923-62372942 | Msa0366970:CDS | 25.0% |
| ! | CAATTCGAGTAATCTTAATA+TGG | - | chr3_1:62373171-62373190 | None:intergenic | 25.0% |
| ! | TAAGATTACTCGAATTGTAA+TGG | + | chr3_1:62373174-62373193 | Msa0366970:three_prime_UTR | 25.0% |
| ATCAATGTCTTTCAAAGCTA+AGG | - | chr3_1:62370037-62370056 | None:intergenic | 30.0% | |
| !! | AGCTTTGAAAGACATTGATT+TGG | + | chr3_1:62370038-62370057 | Msa0366970:CDS | 30.0% |
| !! | TTTTCAAGCATGAAAGGTTT+TGG | - | chr3_1:62370119-62370138 | None:intergenic | 30.0% |
| CTTTCATGCTTGAAAATCAA+GGG | + | chr3_1:62370123-62370142 | Msa0366970:CDS | 30.0% | |
| ATTCTTATAGTAACCAACTG+TGG | - | chr3_1:62370198-62370217 | None:intergenic | 30.0% | |
| GCATGTTATTGAAGATGATT+TGG | + | chr3_1:62370239-62370258 | Msa0366970:CDS | 30.0% | |
| AGTTCTTTACATATGGAGAT+TGG | - | chr3_1:62370366-62370385 | None:intergenic | 30.0% | |
| TTAATGATAAGTGAAGCAGA+TGG | + | chr3_1:62370402-62370421 | Msa0366970:CDS | 30.0% | |
| TAATGATAAGTGAAGCAGAT+GGG | + | chr3_1:62370403-62370422 | Msa0366970:CDS | 30.0% | |
| GAGGAAATATTTGTAAGTGA+AGG | + | chr3_1:62370429-62370448 | Msa0366970:CDS | 30.0% | |
| AGCTTGAAATTGAATTCTCT+GGG | - | chr3_1:62370526-62370545 | None:intergenic | 30.0% | |
| CTGTAAAACATCGTTTCATA+CGG | + | chr3_1:62370544-62370563 | Msa0366970:CDS | 30.0% | |
| GAATTGTCAAAAACAATCTC+TGG | + | chr3_1:62370566-62370585 | Msa0366970:CDS | 30.0% | |
| TATCTTAAATTCGGTTCTAC+CGG | + | chr3_1:62370633-62370652 | Msa0366970:CDS | 30.0% | |
| GATAGATATACAATTGCAAG+TGG | + | chr3_1:62370856-62370875 | Msa0366970:intron | 30.0% | |
| CAATTACATGATAAGAGCAA+AGG | + | chr3_1:62370989-62371008 | Msa0366970:CDS | 30.0% | |
| ! | AATTTTCAATACCACTATCG+TGG | - | chr3_1:62371015-62371034 | None:intergenic | 30.0% |
| ! | TTATGATGGTGATTGAATTC+AGG | - | chr3_1:62371152-62371171 | None:intergenic | 30.0% |
| ! | TAACTCAAGAAGTAATTTGC+AGG | + | chr3_1:62371270-62371289 | Msa0366970:intron | 30.0% |
| TTTATATGCACAAAATGAGG+TGG | - | chr3_1:62371461-62371480 | None:intergenic | 30.0% | |
| ! | AGCTTTATATGCACAAAATG+AGG | - | chr3_1:62371464-62371483 | None:intergenic | 30.0% |
| ! | TTTTTATGCAATCAGTTGGA+GGG | + | chr3_1:62371563-62371582 | Msa0366970:intron | 30.0% |
| !! | ATTCTTCGCTGTTTCTAAAA+TGG | - | chr3_1:62371627-62371646 | None:intergenic | 30.0% |
| AATTGACCTAATGATGAACA+AGG | - | chr3_1:62371846-62371865 | None:intergenic | 30.0% | |
| CTCTTATAAATGAAATCCCA+TGG | - | chr3_1:62371962-62371981 | None:intergenic | 30.0% | |
| !! | TGAAGTCTACTTTTCACATT+TGG | + | chr3_1:62372008-62372027 | Msa0366970:intron | 30.0% |
| GAAATTAAGCTCGAATATTG+AGG | + | chr3_1:62372348-62372367 | Msa0366970:CDS | 30.0% | |
| ! | ATCTGAGATGCAATAGAAAA+CGG | - | chr3_1:62372376-62372395 | None:intergenic | 30.0% |
| TCTAGTCTCCAAAAATCATT+TGG | + | chr3_1:62372551-62372570 | Msa0366970:CDS | 30.0% | |
| ! | ATCAACAGCCAAATGATTTT+TGG | - | chr3_1:62372562-62372581 | None:intergenic | 30.0% |
| ! | AGCATCCTTCAATTCTTTTA+TGG | + | chr3_1:62372613-62372632 | Msa0366970:CDS | 30.0% |
| ! | GCATCCTTCAATTCTTTTAT+GGG | + | chr3_1:62372614-62372633 | Msa0366970:CDS | 30.0% |
| TTCGCTAAGTAATAGATACA+AGG | + | chr3_1:62372641-62372660 | Msa0366970:CDS | 30.0% | |
| !!! | AGCACAAGTTTTAGAAACTA+AGG | + | chr3_1:62373007-62373026 | Msa0366970:CDS | 30.0% |
| ! | GACTATCTTTTGTCATCAAT+AGG | + | chr3_1:62373058-62373077 | Msa0366970:exon | 30.0% |
| ! | TGTGGATCATTTTCCATCTT+TGG | + | chr3_1:62369939-62369958 | Msa0366970:CDS | 35.0% |
| ! | ACAAAAAGGCATGTCATCAT+AGG | - | chr3_1:62370072-62370091 | None:intergenic | 35.0% |
| ! | TATGATGACATGCCTTTTTG+TGG | + | chr3_1:62370071-62370090 | Msa0366970:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | + | chr3_1:62370072-62370091 | Msa0366970:CDS | 35.0% |
| !!! | AATTTTTGGGACCCACAAAA+AGG | - | chr3_1:62370086-62370105 | None:intergenic | 35.0% |
| !! | CCTTGATTTTCAAGCATGAA+AGG | - | chr3_1:62370125-62370144 | None:intergenic | 35.0% |
| CCTTTCATGCTTGAAAATCA+AGG | + | chr3_1:62370122-62370141 | Msa0366970:CDS | 35.0% | |
| CAGACACCTTATTATAGAAG+TGG | - | chr3_1:62370175-62370194 | None:intergenic | 35.0% | |
| !!! | CAGCAAGTGTTTTTAGCTTT+GGG | - | chr3_1:62370311-62370330 | None:intergenic | 35.0% |
| !!! | ACAGCAAGTGTTTTTAGCTT+TGG | - | chr3_1:62370312-62370331 | None:intergenic | 35.0% |
| CTCAGGAAGTTCTTTACATA+TGG | - | chr3_1:62370373-62370392 | None:intergenic | 35.0% | |
| ATCATTAAAACCTGTAGCTC+AGG | - | chr3_1:62370390-62370409 | None:intergenic | 35.0% | |
| CAGCTTGAAATTGAATTCTC+TGG | - | chr3_1:62370527-62370546 | None:intergenic | 35.0% | |
| ATATTGGATAGAGTGTGTAC+CGG | - | chr3_1:62370655-62370674 | None:intergenic | 35.0% | |
| !! | AATAGATTGGTACTGACCTT+TGG | - | chr3_1:62371112-62371131 | None:intergenic | 35.0% |
| CTATGCATGGATCAATAGAT+TGG | - | chr3_1:62371125-62371144 | None:intergenic | 35.0% | |
| !! | GAACTTGTTGAAAATGTTCC+TGG | + | chr3_1:62371239-62371258 | Msa0366970:CDS | 35.0% |
| ATAAATGAACAACCTCCACT+TGG | + | chr3_1:62371384-62371403 | Msa0366970:CDS | 35.0% | |
| ATATTCCTGAGAAGGTTTGA+CGG | - | chr3_1:62371424-62371443 | None:intergenic | 35.0% | |
| ! | CTTTTTATGCAATCAGTTGG+AGG | + | chr3_1:62371562-62371581 | Msa0366970:intron | 35.0% |
| !! | GTCGAAATAAGTGTTGAAGA+AGG | + | chr3_1:62371783-62371802 | Msa0366970:CDS | 35.0% |
| ! | GTTACCACTAATGATGATGA+AGG | + | chr3_1:62372206-62372225 | Msa0366970:CDS | 35.0% |
| TTCACCTTCATCATCATTAG+TGG | - | chr3_1:62372213-62372232 | None:intergenic | 35.0% | |
| TTCTTCTTTGGTTGTCACAA+GGG | + | chr3_1:62372518-62372537 | Msa0366970:CDS | 35.0% | |
| GAATTGAAGGATGCTTAACA+AGG | - | chr3_1:62372608-62372627 | None:intergenic | 35.0% | |
| GTGTCCCATAAAAGAATTGA+AGG | - | chr3_1:62372621-62372640 | None:intergenic | 35.0% | |
| TAACACATCCAACACACTAT+GGG | - | chr3_1:62372712-62372731 | None:intergenic | 35.0% | |
| GATGTGGTTTCGATAAAGAT+TGG | + | chr3_1:62372778-62372797 | Msa0366970:CDS | 35.0% | |
| TGGTTTCGATAAAGATTGGT+TGG | + | chr3_1:62372782-62372801 | Msa0366970:CDS | 35.0% | |
| ! | TTCGATAAAGATTGGTTGGA+TGG | + | chr3_1:62372786-62372805 | Msa0366970:CDS | 35.0% |
| AGATAGTCTAATAGCCAAGA+GGG | - | chr3_1:62373046-62373065 | None:intergenic | 35.0% | |
| AAGATAGTCTAATAGCCAAG+AGG | - | chr3_1:62373047-62373066 | None:intergenic | 35.0% | |
| ! | TCCATCTTTGGAAAGTCTTC+AGG | + | chr3_1:62369951-62369970 | Msa0366970:CDS | 40.0% |
| ACCTGAAGACTTTCCAAAGA+TGG | - | chr3_1:62369955-62369974 | None:intergenic | 40.0% | |
| ! | TGGAGGGAGATCGAATTTTT+GGG | - | chr3_1:62370099-62370118 | None:intergenic | 40.0% |
| ! | TTGGAGGGAGATCGAATTTT+TGG | - | chr3_1:62370100-62370119 | None:intergenic | 40.0% |
| !!! | CAAGCATGAAAGGTTTTGGA+GGG | - | chr3_1:62370115-62370134 | None:intergenic | 40.0% |
| !! | TCAAGCATGAAAGGTTTTGG+AGG | - | chr3_1:62370116-62370135 | None:intergenic | 40.0% |
| TAAAGAACTTCCTGAGCTAC+AGG | + | chr3_1:62370377-62370396 | Msa0366970:CDS | 40.0% | |
| TGAAGGTGATGATCACAAAG+TGG | + | chr3_1:62370446-62370465 | Msa0366970:CDS | 40.0% | |
| ! | ACCTCTAAAAAATTTGCCGC+TGG | + | chr3_1:62371046-62371065 | Msa0366970:CDS | 40.0% |
| ! | CCTCTAAAAAATTTGCCGCT+GGG | + | chr3_1:62371047-62371066 | Msa0366970:CDS | 40.0% |
| ! | TACTTTGACTTCAAACCCAG+CGG | - | chr3_1:62371065-62371084 | None:intergenic | 40.0% |
| AGTTCATGATCTGTCTTTGC+TGG | - | chr3_1:62371224-62371243 | None:intergenic | 40.0% | |
| TCTTGAGTTATCTCTATGCC+AGG | - | chr3_1:62371260-62371279 | None:intergenic | 40.0% | |
| GTAGCATCAATTTCTCCAAG+TGG | - | chr3_1:62371402-62371421 | None:intergenic | 40.0% | |
| !! | AGGGGAAATGCCTTTTGTTT+AGG | - | chr3_1:62371674-62371693 | None:intergenic | 40.0% |
| TCAGCACCTTGTTCATCATT+AGG | + | chr3_1:62371837-62371856 | Msa0366970:CDS | 40.0% | |
| ATTCCTTCAAAGCCTTCTGA+AGG | + | chr3_1:62372394-62372413 | Msa0366970:CDS | 40.0% | |
| ! | ATACCTTCAGAAGGCTTTGA+AGG | - | chr3_1:62372400-62372419 | None:intergenic | 40.0% |
| GTTCTTCTTTGGTTGTCACA+AGG | + | chr3_1:62372517-62372536 | Msa0366970:CDS | 40.0% | |
| CTAACACATCCAACACACTA+TGG | - | chr3_1:62372713-62372732 | None:intergenic | 40.0% | |
| CATAGTGTGTTGGATGTGTT+AGG | + | chr3_1:62372711-62372730 | Msa0366970:CDS | 40.0% | |
| TTACAAGATGTTCGCAGATG+TGG | + | chr3_1:62372762-62372781 | Msa0366970:CDS | 40.0% | |
| ! | TAAAGATTGGTTGGATGGTG+TGG | + | chr3_1:62372791-62372810 | Msa0366970:CDS | 40.0% |
| !! | GAGACTCTCTAAAACAGCTT+CGG | - | chr3_1:62372976-62372995 | None:intergenic | 40.0% |
| GATAGTCTAATAGCCAAGAG+GGG | - | chr3_1:62373045-62373064 | None:intergenic | 40.0% | |
| ! | AATAAGGTGTCTGCCACAGT+TGG | + | chr3_1:62370182-62370201 | Msa0366970:CDS | 45.0% |
| GATAAGTGAAGCAGATGGGT+TGG | + | chr3_1:62370407-62370426 | Msa0366970:CDS | 45.0% | |
| !!! | CCCAGCGGCAAATTTTTTAG+AGG | - | chr3_1:62371050-62371069 | None:intergenic | 45.0% |
| ! | ATACGAGCTGACTTCTCCAA+AGG | + | chr3_1:62371093-62371112 | Msa0366970:CDS | 45.0% |
| GAATTCAGGTCTGCTATGCA+TGG | - | chr3_1:62371138-62371157 | None:intergenic | 45.0% | |
| GCATCAATTTCTCCAAGTGG+AGG | - | chr3_1:62371399-62371418 | None:intergenic | 45.0% | |
| TGTCTTGGCATTAGCAGATG+TGG | - | chr3_1:62371811-62371830 | None:intergenic | 45.0% | |
| !! | AGGTGCTGAAGTTTCTGTCT+TGG | - | chr3_1:62371826-62371845 | None:intergenic | 45.0% |
| ACCACGACAACAATACTCGA+AGG | - | chr3_1:62371923-62371942 | None:intergenic | 45.0% | |
| ! | GAAGGGTCACCTGAAAGTAT+AGG | - | chr3_1:62372477-62372496 | None:intergenic | 45.0% |
| TAGCTCAGCTAGACAGTTGT+AGG | - | chr3_1:62372673-62372692 | None:intergenic | 45.0% | |
| CATCCAACACACTATGGGTT+TGG | - | chr3_1:62372707-62372726 | None:intergenic | 45.0% | |
| TTCCTTGGTTACACACTGCT+GGG | - | chr3_1:62372880-62372899 | None:intergenic | 45.0% | |
| ACGCATCTCTTCAACTTCCT+TGG | - | chr3_1:62372895-62372914 | None:intergenic | 45.0% | |
| !!! | TTTAATTTATATCTTAAATT+CGG | + | chr3_1:62370624-62370643 | Msa0366970:CDS | 5.0% |
| !!! | TCAATAATTTTTTATTTTTT+TGG | - | chr3_1:62370789-62370808 | None:intergenic | 5.0% |
| !! | AAGTGAAGCAGATGGGTTGG+AGG | + | chr3_1:62370410-62370429 | Msa0366970:CDS | 50.0% |
| GAATTCTCTGGGCATGACTG+AGG | - | chr3_1:62370515-62370534 | None:intergenic | 50.0% | |
| ATCAACAGCAGACCTCAGAG+AGG | + | chr3_1:62370596-62370615 | Msa0366970:CDS | 50.0% | |
| AAGAGCAAAGGCCACGATAG+TGG | + | chr3_1:62371001-62371020 | Msa0366970:CDS | 50.0% | |
| GGAGAAGTCAGCTCGTATTC+TGG | - | chr3_1:62371091-62371110 | None:intergenic | 50.0% | |
| TGCTACCGTCAAACCTTCTC+AGG | + | chr3_1:62371416-62371435 | Msa0366970:CDS | 50.0% | |
| ! | GCCTTCGAGTATTGTTGTCG+TGG | + | chr3_1:62371919-62371938 | Msa0366970:intron | 50.0% |
| CCAACACACTATGGGTTTGG+AGG | - | chr3_1:62372704-62372723 | None:intergenic | 50.0% | |
| CCTCCAAACCCATAGTGTGT+TGG | + | chr3_1:62372701-62372720 | Msa0366970:CDS | 50.0% | |
| TTCCCAGCAGTGTGTAACCA+AGG | + | chr3_1:62372875-62372894 | Msa0366970:CDS | 50.0% | |
| CTTCCTTGGTTACACACTGC+TGG | - | chr3_1:62372881-62372900 | None:intergenic | 50.0% | |
| ! | GCTGCTTTAAGTGCCCCTCT+TGG | + | chr3_1:62373029-62373048 | Msa0366970:CDS | 55.0% |
| CTCTGGGCATGACTGAGGCT+TGG | - | chr3_1:62370510-62370529 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 62369928 | 62373197 | 62369928 | ID=Msa0366970;Name=Msa0366970 |
| chr3_1 | mRNA | 62369928 | 62373197 | 62369928 | ID=Msa0366970-mRNA-1;Parent=Msa0366970;Name=Msa0366970-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.87|0.66|1|1|1|9|139|664 |
| chr3_1 | exon | 62369928 | 62370654 | 62369928 | ID=Msa0366970-mRNA-1:exon:12095;Parent=Msa0366970-mRNA-1 |
| chr3_1 | exon | 62370951 | 62371114 | 62370951 | ID=Msa0366970-mRNA-1:exon:12096;Parent=Msa0366970-mRNA-1 |
| chr3_1 | exon | 62371206 | 62371280 | 62371206 | ID=Msa0366970-mRNA-1:exon:12097;Parent=Msa0366970-mRNA-1 |
| chr3_1 | exon | 62371378 | 62371446 | 62371378 | ID=Msa0366970-mRNA-1:exon:12098;Parent=Msa0366970-mRNA-1 |
| chr3_1 | exon | 62371578 | 62371703 | 62371578 | ID=Msa0366970-mRNA-1:exon:12099;Parent=Msa0366970-mRNA-1 |
| chr3_1 | exon | 62371780 | 62371893 | 62371780 | ID=Msa0366970-mRNA-1:exon:12100;Parent=Msa0366970-mRNA-1 |
| chr3_1 | exon | 62372173 | 62372227 | 62372173 | ID=Msa0366970-mRNA-1:exon:12101;Parent=Msa0366970-mRNA-1 |
| chr3_1 | exon | 62372323 | 62372415 | 62372323 | ID=Msa0366970-mRNA-1:exon:12102;Parent=Msa0366970-mRNA-1 |
| chr3_1 | exon | 62372487 | 62373197 | 62372487 | ID=Msa0366970-mRNA-1:exon:12103;Parent=Msa0366970-mRNA-1 |
| chr3_1 | CDS | 62369928 | 62370654 | 62369928 | ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1 |
| chr3_1 | CDS | 62370951 | 62371114 | 62370951 | ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1 |
| chr3_1 | CDS | 62371206 | 62371280 | 62371206 | ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1 |
| chr3_1 | CDS | 62371378 | 62371446 | 62371378 | ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1 |
| chr3_1 | CDS | 62371578 | 62371703 | 62371578 | ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1 |
| chr3_1 | CDS | 62371780 | 62371893 | 62371780 | ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1 |
| chr3_1 | CDS | 62372173 | 62372227 | 62372173 | ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1 |
| chr3_1 | CDS | 62372323 | 62372415 | 62372323 | ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1 |
| chr3_1 | CDS | 62372487 | 62373058 | 62372487 | ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1 |
| chr3_1 | three_prime_UTR | 62373059 | 62373197 | 62373059 | ID=Msa0366970-mRNA-1:three_prime_utr;Parent=Msa0366970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
