AlfalfaGEDB | Msa0366970

M. sativa cultivar zhongmu-4 / Msa0366970

KEGG: K13459
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0366970	RHN67914.1	68.768	682	170	10	1	664	1231	1887	0.0	865

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0366970	A0A396IU65	68.768	682	170	10	1	664	1231	1887	0.0	865

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014710	Msa0366970	0.805652	1.203981e-49	-8.615850e-47
Msa0017510	Msa0366970	0.817782	2.758267e-52	-8.615850e-47
Msa0040450	Msa0366970	0.809515	1.821677e-50	-8.615850e-47
Msa0073530	Msa0366970	0.807656	4.544116e-50	-8.615850e-47
Msa0116770	Msa0366970	0.820383	7.061783e-53	-8.615850e-47
Msa0157290	Msa0366970	0.816429	5.554592e-52	-8.615850e-47
Msa0165210	Msa0366970	0.805306	1.422766e-49	-8.615850e-47
Msa0165220	Msa0366970	0.817553	3.106143e-52	-8.615850e-47
Msa0201070	Msa0366970	0.816634	4.998547e-52	-8.615850e-47
Msa0212990	Msa0366970	0.801330	9.476440e-49	-8.615850e-47

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0366970	MtrunA17_Chr3g0107931	68.768	682	170	10	1	664	1231	1887	0.0	865
Msa0366970	MtrunA17_Chr3g0091861	56.283	748	198	15	1	655	1153	1864	0.0	711
Msa0366970	MtrunA17_Chr3g0108821	55.474	685	198	19	2	664	1203	1802	0.0	608
Msa0366970	MtrunA17_Chr3g0108071	49.271	686	219	13	1	634	353	961	0.0	543
Msa0366970	MtrunA17_Chr3g0108811	44.515	793	224	21	2	664	1224	1930	1.57e-159	504
Msa0366970	MtrunA17_Chr3g0105521	47.774	674	224	16	28	664	1023	1605	1.31e-156	491
Msa0366970	MtrunA17_Chr3g0105521	31.081	148	89	4	58	196	684	827	5.91e-11	66.2
Msa0366970	MtrunA17_Chr3g0108171	50.082	613	142	14	1	508	1073	1626	6.80e-153	486
Msa0366970	MtrunA17_Chr3g0108171	58.654	416	65	7	298	664	1610	1967	1.06e-123	404
Msa0366970	MtrunA17_Chr3g0108111	65.768	371	111	8	1	361	154	518	3.99e-148	443

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 95 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCATTGCAAAAGATAT+TGG	0.248077	3_1:+62372851	Msa0366970:CDS
AACAATAAAATACCTTCAGA+AGG	0.567414	3_1:-62372406	None:intergenic
AAGAGCAAAGGCCACGATAG+TGG	0.518465	3_1:+62371001	Msa0366970:CDS
AAGATAGTCTAATAGCCAAG+AGG	0.657497	3_1:-62373044	None:intergenic
AAGTGAAGCAGATGGGTTGG+AGG	0.524347	3_1:+62370410	Msa0366970:CDS
AATAAGGTGTCTGCCACAGT+TGG	0.600697	3_1:+62370182	Msa0366970:CDS
AATATTACAACTTTCAGATT+TGG	0.275031	3_1:-62370474	None:intergenic
AATTGACCTAATGATGAACA+AGG	0.677754	3_1:-62371843	None:intergenic
ACAAAAGATATCTTCTACAT+TGG	0.415179	3_1:-62369983	None:intergenic
ACCTGAAGACTTTCCAAAGA+TGG	0.399501	3_1:-62369952	None:intergenic

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCAATGTCTTTCAAAGCTA+AGG	-	chr3_1:62370037-62370056	None:intergenic	30.0%
CTTTCATGCTTGAAAATCAA+GGG	+	chr3_1:62370123-62370142	Msa0366970:CDS	30.0%
ATTCTTATAGTAACCAACTG+TGG	-	chr3_1:62370198-62370217	None:intergenic	30.0%
GCATGTTATTGAAGATGATT+TGG	+	chr3_1:62370239-62370258	Msa0366970:CDS	30.0%
AGTTCTTTACATATGGAGAT+TGG	-	chr3_1:62370366-62370385	None:intergenic	30.0%
TTAATGATAAGTGAAGCAGA+TGG	+	chr3_1:62370402-62370421	Msa0366970:CDS	30.0%
TAATGATAAGTGAAGCAGAT+GGG	+	chr3_1:62370403-62370422	Msa0366970:CDS	30.0%
GAGGAAATATTTGTAAGTGA+AGG	+	chr3_1:62370429-62370448	Msa0366970:CDS	30.0%
AGCTTGAAATTGAATTCTCT+GGG	-	chr3_1:62370526-62370545	None:intergenic	30.0%
CTGTAAAACATCGTTTCATA+CGG	+	chr3_1:62370544-62370563	Msa0366970:CDS	30.0%

Showing 1 to 10 of 170 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	62369928	62373197	62369928	ID=Msa0366970;Name=Msa0366970
chr3_1	mRNA	62369928	62373197	62369928	ID=Msa0366970-mRNA-1;Parent=Msa0366970;Name=Msa0366970-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.87\|0.66\|1\|1\|1\|9\|139\|664
chr3_1	exon	62369928	62370654	62369928	ID=Msa0366970-mRNA-1:exon:12095;Parent=Msa0366970-mRNA-1
chr3_1	exon	62370951	62371114	62370951	ID=Msa0366970-mRNA-1:exon:12096;Parent=Msa0366970-mRNA-1
chr3_1	exon	62371206	62371280	62371206	ID=Msa0366970-mRNA-1:exon:12097;Parent=Msa0366970-mRNA-1
chr3_1	exon	62371378	62371446	62371378	ID=Msa0366970-mRNA-1:exon:12098;Parent=Msa0366970-mRNA-1
chr3_1	exon	62371578	62371703	62371578	ID=Msa0366970-mRNA-1:exon:12099;Parent=Msa0366970-mRNA-1
chr3_1	exon	62371780	62371893	62371780	ID=Msa0366970-mRNA-1:exon:12100;Parent=Msa0366970-mRNA-1
chr3_1	exon	62372173	62372227	62372173	ID=Msa0366970-mRNA-1:exon:12101;Parent=Msa0366970-mRNA-1
chr3_1	exon	62372323	62372415	62372323	ID=Msa0366970-mRNA-1:exon:12102;Parent=Msa0366970-mRNA-1
chr3_1	exon	62372487	62373197	62372487	ID=Msa0366970-mRNA-1:exon:12103;Parent=Msa0366970-mRNA-1
chr3_1	CDS	62369928	62370654	62369928	ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1
chr3_1	CDS	62370951	62371114	62370951	ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1
chr3_1	CDS	62371206	62371280	62371206	ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1
chr3_1	CDS	62371378	62371446	62371378	ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1
chr3_1	CDS	62371578	62371703	62371578	ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1
chr3_1	CDS	62371780	62371893	62371780	ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1
chr3_1	CDS	62372173	62372227	62372173	ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1
chr3_1	CDS	62372323	62372415	62372323	ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1
chr3_1	CDS	62372487	62373058	62372487	ID=Msa0366970-mRNA-1:cds;Parent=Msa0366970-mRNA-1
chr3_1	three_prime_UTR	62373059	62373197	62373059	ID=Msa0366970-mRNA-1:three_prime_utr;Parent=Msa0366970-mRNA-1

Gene Sequence

>Msa0366970

TTGAGTGGGAATGTGGATCATTTTCCATCTTTGGAAAGTCTTCAGGTAAAGAACTCCAATGTAGAAGATATCTTTTGTCTGAATGAAATAAATGAACAACAAATGACCTTAGCTTTGAAAGACATTGATTTGGATGTTTTGCCTATGATGACATGCCTTTTTGTGGGTCCCAAAAATTCGATCTCCCTCCAAAACCTTTCATGCTTGAAAATCAAGGGATGTGAAAAATTGAAAATTGTTTTCTCCACTTCTATAATAAGGTGTCTGCCACAGTTGGTTACTATAAGAATTGAAGAATGCAAAGAGTTGAAGCATGTTATTGAAGATGATTTGGCGAATAAAAACTCCTCAAATTTTATGTCTACAACAAAGACATGCTTCCCAAAGCTAAAAACACTTGCTGTAGTAAAGTGCAACAAGTTGAAAGATGTGTTTCCAATCTCCATATGTAAAGAACTTCCTGAGCTACAGGTTTTAATGATAAGTGAAGCAGATGGGTTGGAGGAAATATTTGTAAGTGAAGGTGATGATCACAAAGTGGAGATTCCAAATCTGAAAGTTGTAATATTTGAAAATCTACCAAGCCTCAGTCATGCCCAGAGAATTCAATTTCAAGCTGTAAAACATCGTTTCATACGGAATTGTCAAAAACAATCTCTGGCTTCAGCATCAACAGCAGACCTCAGAGAGGATATTTTTAATTTATATCTTAAATTCGGTTCTACCGATTCTGAATTGTTTGACTATTTGGTGACTCTGTTTCGACAATTACATGATAAGAGCAAAGGCCACGATAGTGGTATTGAAAATTCTACTCCAAAAACCTCTAAAAAATTTGCCGCTGGGTTTGAAGTCAAAGTATCACCAGAATACGAGCTGACTTCTCCAAAGAAAAAAATGAAACAACCAGCAAAGACAGATCATGAACTTGTTGAAAATGTTCCTGGCATAGAGATAACTCAAGAAGAGTTGATAAATGAACAACCTCCACTTGGAGAAATTGATGCTACCGTCAAACCTTCTCAGGAATATAATTTGGAGGGTTCTACATCAGAAACAAATGTCGCATCAACTTTGTCGACCATTTTAGAAACAGCGAAGAATGAGCTACCTATACATTTAGTTTCTCCTAAACAAAAGGCATTTCCCCTCATTTTTCTTGGTGTCGAAATAAGTGTTGAAGAAGGAACCACATCTGCTAATGCCAAGACAGAAACTTCAGCACCTTGTTCATCATTAGGTCAATTAGCTTCTTCTAAGCATAAAACTTCACAAGAAGATGGTGATGTTACTACTCAATATGTTGATGTTACCACTAATGATGATGAAGTTTCTCTAAATGATGATGTTGTCATGAAATTAAGCTCGAATATTGAGGATCCGTTTTCTATTGCATCTCAGATTCCTTCAAAGCCTTCTGAAGGTGACCCTTCTAAAATAGATGAAGATTTATGTTCTTCTTTGGTTGTCACAAGGGAGCTTGAGAATCTAGTCTCCAAAAATCATTTGGCTGTTGATAACTTGTCTTTGTTGACTAATTTCCTTGTTAAGCATCCTTCAATTCTTTTATGGGACACTTCGCTAAGTAATAGATACAAGGCTTATGCCTACAACTGTCTAGCTGAGCTATTGAAATTCCTCCAAACCCATAGTGTGTTGGATGTGTTAGGTTCAAGCCAGTCTGAATTTTTTGAGTTATTACAAGATGTTCGCAGATGTGGTTTCGATAAAGATTGGTTGGATGGTGTGGAAAAGCGCGCTTTGTTTCCTGATTTACAATTCTCTCAAAATGCATTGCAAAAGATATTGGATTCCCAGCAGTGTGTAACCAAGGAAGTTGAAGAGATGCGTTTAAAGATAAACATTTTGAATCAACATGTGGAAGATCTTAAGCATCAATTGAAAGTCTCCGAAGCTGTTTTAGAGAGTCTCATTAAACAGAAAGCACAAGTTTTAGAAACTAAGGCTGCTTTAAGTGCCCCTCTTGGCTATTAG

Protein sequence

>Msa0366970

LSGNVDHFPSLESLQVKNSNVEDIFCLNEINEQQMTLALKDIDLDVLPMMTCLFVGPKNSISLQNLSCLKIKGCEKLKIVFSTSIIRCLPQLVTIRIEECKELKHVIEDDLANKNSSNFMSTTKTCFPKLKTLAVVKCNKLKDVFPISICKELPELQVLMISEADGLEEIFVSEGDDHKVEIPNLKVVIFENLPSLSHAQRIQFQAVKHRFIRNCQKQSLASASTADLREDIFNLYLKFGSTDSELFDYLVTLFRQLHDKSKGHDSGIENSTPKTSKKFAAGFEVKVSPEYELTSPKKKMKQPAKTDHELVENVPGIEITQEELINEQPPLGEIDATVKPSQEYNLEGSTSETNVASTLSTILETAKNELPIHLVSPKQKAFPLIFLGVEISVEEGTTSANAKTETSAPCSSLGQLASSKHKTSQEDGDVTTQYVDVTTNDDEVSLNDDVVMKLSSNIEDPFSIASQIPSKPSEGDPSKIDEDLCSSLVVTRELENLVSKNHLAVDNLSLLTNFLVKHPSILLWDTSLSNRYKAYAYNCLAELLKFLQTHSVLDVLGSSQSEFFELLQDVRRCGFDKDWLDGVEKRALFPDLQFSQNALQKILDSQQCVTKEVEEMRLKINILNQHVEDLKHQLKVSEAVLESLIKQKAQVLETKAALSAPLGY*