Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653510 | PNY00238.1 | 80.000 | 50 | 9 | 1 | 1 | 49 | 28 | 77 | 7.70e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653510 | sp|F4J3R7|SPD1_ARATH | 74.000 | 50 | 12 | 1 | 1 | 49 | 236 | 285 | 2.02e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0653510 | 0.804801 | 1.814807e-49 | -8.615850e-47 |
| Msa0014710 | Msa0653510 | 0.828148 | 1.056045e-54 | -8.615850e-47 |
| Msa0017510 | Msa0653510 | 0.814753 | 1.311821e-51 | -8.615850e-47 |
| Msa0039330 | Msa0653510 | 0.808544 | 2.940068e-50 | -8.615850e-47 |
| Msa0044540 | Msa0653510 | -0.801181 | 1.016439e-48 | -8.615850e-47 |
| Msa0048000 | Msa0653510 | 0.800078 | 1.705808e-48 | -8.615850e-47 |
| Msa0094100 | Msa0653510 | 0.806717 | 7.183807e-50 | -8.615850e-47 |
| Msa0101810 | Msa0653510 | -0.824816 | 6.575267e-54 | -8.615850e-47 |
| Msa0607540 | Msa0653510 | 0.808640 | 2.803935e-50 | -8.615850e-47 |
| Msa0608620 | Msa0653510 | 0.803751 | 3.002037e-49 | -8.615850e-47 |
| Msa0621590 | Msa0653510 | 0.800252 | 1.572593e-48 | -8.615850e-47 |
| Msa0626090 | Msa0653510 | 0.821601 | 3.702508e-53 | -8.615850e-47 |
| Msa0638070 | Msa0653510 | 0.807449 | 5.027636e-50 | -8.615850e-47 |
| Msa0638280 | Msa0653510 | 0.815781 | 7.751480e-52 | -8.615850e-47 |
| Msa0638320 | Msa0653510 | 0.811101 | 8.285845e-51 | -8.615850e-47 |
| Msa0648880 | Msa0653510 | 0.803538 | 3.323467e-49 | -8.615850e-47 |
| Msa0653510 | Msa0657610 | 0.817480 | 3.227185e-52 | -8.615850e-47 |
| Msa0653510 | Msa0657670 | 0.805153 | 1.531917e-49 | -8.615850e-47 |
| Msa0653510 | Msa0657970 | 0.811774 | 5.916066e-51 | -8.615850e-47 |
| Msa0653510 | Msa0658570 | 0.835512 | 1.607193e-56 | -8.615850e-47 |
| Msa0653510 | Msa0669440 | 0.826289 | 2.944304e-54 | -8.615850e-47 |
| Msa0653510 | Msa0677270 | 0.806696 | 7.256082e-50 | -8.615850e-47 |
| Msa0653510 | Msa0678600 | 0.809927 | 1.485808e-50 | -8.615850e-47 |
| Msa0653510 | Msa0682550 | 0.802874 | 4.561256e-49 | -8.615850e-47 |
| Msa0653510 | Msa0690440 | 0.801260 | 9.793080e-49 | -8.615850e-47 |
| Msa0653510 | Msa0693380 | 0.803840 | 2.876753e-49 | -8.615850e-47 |
| Msa0653510 | Msa0696640 | 0.803530 | 3.336335e-49 | -8.615850e-47 |
| Msa0653510 | Msa0703490 | 0.808436 | 3.099901e-50 | -8.615850e-47 |
| Msa0653510 | Msa0715720 | 0.828620 | 8.124282e-55 | -8.615850e-47 |
| Msa0653510 | Msa0744040 | 0.819150 | 1.350812e-52 | -8.615850e-47 |
| Msa0653510 | Msa0756630 | -0.842302 | 2.809174e-58 | -8.615850e-47 |
| Msa0653510 | Msa0776030 | 0.808023 | 3.796069e-50 | -8.615850e-47 |
| Msa0653510 | Msa0776990 | 0.802262 | 6.099242e-49 | -8.615850e-47 |
| Msa0653510 | Msa0802470 | -0.824404 | 8.220907e-54 | -8.615850e-47 |
| Msa0653510 | Msa0828540 | 0.810270 | 1.253046e-50 | -8.615850e-47 |
| Msa0653510 | Msa0829620 | 0.801966 | 7.017589e-49 | -8.615850e-47 |
| Msa0653510 | Msa0843780 | -0.806305 | 8.776323e-50 | -8.615850e-47 |
| Msa0653510 | Msa0844900 | 0.828066 | 1.105432e-54 | -8.615850e-47 |
| Msa0653510 | Msa0867890 | 0.800980 | 1.117451e-48 | -8.615850e-47 |
| Msa0653510 | Msa0876850 | -0.827131 | 1.852770e-54 | -8.615850e-47 |
| Msa0653510 | Msa0880140 | 0.811286 | 7.555123e-51 | -8.615850e-47 |
| Msa0653510 | Msa0891040 | 0.853676 | 2.040932e-61 | -8.615850e-47 |
| Msa0653510 | Msa0907070 | 0.814489 | 1.501072e-51 | -8.615850e-47 |
| Msa0653510 | Msa0925290 | 0.807451 | 5.021514e-50 | -8.615850e-47 |
| Msa0653510 | Msa0927290 | 0.813852 | 2.074815e-51 | -8.615850e-47 |
| Msa0653510 | Msa0942080 | -0.816539 | 5.248660e-52 | -8.615850e-47 |
| Msa0653510 | Msa0956390 | 0.812585 | 3.937813e-51 | -8.615850e-47 |
| Msa0653510 | Msa0969520 | 0.810920 | 9.066743e-51 | -8.615850e-47 |
| Msa0653510 | Msa0969570 | 0.801575 | 8.440359e-49 | -8.615850e-47 |
| Msa0653510 | Msa0977180 | -0.820123 | 8.098712e-53 | -8.615850e-47 |
| Msa0653510 | Msa0990960 | 0.835544 | 1.577628e-56 | -8.615850e-47 |
| Msa0653510 | Msa0991670 | 0.834126 | 3.588579e-56 | -8.615850e-47 |
| Msa0653510 | Msa0992490 | -0.802258 | 6.109862e-49 | -8.615850e-47 |
| Msa0653510 | Msa0993600 | 0.800418 | 1.454573e-48 | -8.615850e-47 |
| Msa0653510 | Msa1006850 | 0.814786 | 1.290356e-51 | -8.615850e-47 |
| Msa0653510 | Msa1014540 | 0.815814 | 7.624626e-52 | -8.615850e-47 |
| Msa0653510 | Msa1030970 | 0.822000 | 2.993268e-53 | -8.615850e-47 |
| Msa0653510 | Msa1040120 | 0.839619 | 1.421556e-57 | -8.615850e-47 |
| Msa0653510 | Msa1045200 | 0.805515 | 1.286154e-49 | -8.615850e-47 |
| Msa0653510 | Msa1068200 | -0.815176 | 1.057321e-51 | -8.615850e-47 |
| Msa0653510 | Msa1075220 | -0.839060 | 1.985288e-57 | -8.615850e-47 |
| Msa0653510 | Msa1080160 | 0.809267 | 2.058430e-50 | -8.615850e-47 |
| Msa0653510 | Msa1082500 | 0.833631 | 4.771860e-56 | -8.615850e-47 |
| Msa0653510 | Msa1083410 | 0.807099 | 5.963384e-50 | -8.615850e-47 |
| Msa0653510 | Msa1085300 | 0.817838 | 2.679484e-52 | -8.615850e-47 |
| Msa0653510 | Msa1085920 | 0.823010 | 1.743323e-53 | -8.615850e-47 |
| Msa0653510 | Msa1089040 | 0.808981 | 2.370789e-50 | -8.615850e-47 |
| Msa0653510 | Msa1097800 | 0.810265 | 1.256080e-50 | -8.615850e-47 |
| Msa0653510 | Msa1098560 | 0.826476 | 2.656122e-54 | -8.615850e-47 |
| Msa0653510 | Msa1116130 | -0.838357 | 3.017133e-57 | -8.615850e-47 |
| Msa0653510 | Msa1128160 | 0.816774 | 4.650486e-52 | -8.615850e-47 |
| Msa0653510 | Msa1139000 | -0.824304 | 8.678836e-54 | -8.615850e-47 |
| Msa0653510 | Msa1162550 | -0.827451 | 1.553475e-54 | -8.615850e-47 |
| Msa0653510 | Msa1165360 | 0.814389 | 1.579810e-51 | -8.615850e-47 |
| Msa0653510 | Msa1179120 | 0.802327 | 5.913022e-49 | -8.615850e-47 |
| Msa0653510 | Msa1181550 | 0.806136 | 9.525073e-50 | -8.615850e-47 |
| Msa0653510 | Msa1205130 | 0.834196 | 3.446484e-56 | -8.615850e-47 |
| Msa0653510 | Msa1207690 | 0.825470 | 4.607369e-54 | -8.615850e-47 |
| Msa0653510 | Msa1222970 | 0.827806 | 1.276510e-54 | -8.615850e-47 |
| Msa0653510 | Msa1228210 | 0.827021 | 1.969159e-54 | -8.615850e-47 |
| Msa0653510 | Msa1229600 | 0.817429 | 3.313155e-52 | -8.615850e-47 |
| Msa0653510 | Msa1233500 | 0.807623 | 4.617856e-50 | -8.615850e-47 |
| Msa0653510 | Msa1233890 | 0.825755 | 3.942695e-54 | -8.615850e-47 |
| Msa0653510 | Msa1238930 | 0.807023 | 6.189093e-50 | -8.615850e-47 |
| Msa0653510 | Msa1242220 | 0.837318 | 5.578617e-57 | -8.615850e-47 |
| Msa0653510 | Msa1242230 | 0.825648 | 4.179876e-54 | -8.615850e-47 |
| Msa0653510 | Msa1242240 | 0.820072 | 8.318251e-53 | -8.615850e-47 |
| Msa0653510 | Msa1258380 | -0.811618 | 6.396860e-51 | -8.615850e-47 |
| Msa0653510 | Msa1264020 | 0.841172 | 5.582017e-58 | -8.615850e-47 |
| Msa0653510 | Msa1267060 | 0.815233 | 1.026921e-51 | -8.615850e-47 |
| Msa0653510 | Msa1270610 | 0.811163 | 8.030668e-51 | -8.615850e-47 |
| Msa0653510 | Msa1271280 | 0.818502 | 1.895684e-52 | -8.615850e-47 |
| Msa0653510 | Msa1271300 | 0.820914 | 5.332811e-53 | -8.615850e-47 |
| Msa0653510 | Msa1273430 | 0.801108 | 1.051820e-48 | -8.615850e-47 |
| Msa0653510 | Msa1278840 | 0.813068 | 3.085867e-51 | -8.615850e-47 |
| Msa0653510 | Msa1279210 | 0.800292 | 1.542989e-48 | -8.615850e-47 |
| Msa0653510 | Msa1283840 | 0.835456 | 1.660603e-56 | -8.615850e-47 |
| Msa0653510 | Msa1283860 | 0.824219 | 9.089255e-54 | -8.615850e-47 |
| Msa0653510 | Msa1284260 | 0.841589 | 4.335129e-58 | -8.615850e-47 |
| Msa0653510 | Msa1291660 | 0.838274 | 3.170680e-57 | -8.615850e-47 |
| Msa0653510 | Msa1306850 | 0.800207 | 1.606121e-48 | -8.615850e-47 |
| Msa0653510 | Msa1310210 | 0.830374 | 3.043753e-55 | -8.615850e-47 |
| Msa0653510 | Msa1322860 | 0.844740 | 6.268194e-59 | -8.615850e-47 |
| Msa0653510 | Msa1322890 | 0.845595 | 3.682303e-59 | -8.615850e-47 |
| Msa0653510 | Msa1324780 | 0.821983 | 3.020898e-53 | -8.615850e-47 |
| Msa0653510 | Msa1327050 | 0.840448 | 8.641412e-58 | -8.615850e-47 |
| Msa0653510 | Msa1340650 | 0.808127 | 3.607972e-50 | -8.615850e-47 |
| Msa0653510 | Msa1346370 | 0.809687 | 1.672624e-50 | -8.615850e-47 |
| Msa0653510 | Msa1350840 | 0.837753 | 4.315896e-57 | -8.615850e-47 |
| Msa0653510 | Msa1365040 | -0.810465 | 1.137231e-50 | -8.615850e-47 |
| Msa0653510 | Msa1367080 | 0.827963 | 1.169823e-54 | -8.615850e-47 |
| Msa0653510 | Msa1369530 | 0.818566 | 1.833308e-52 | -8.615850e-47 |
| Msa0653510 | Msa1372760 | 0.804605 | 1.993619e-49 | -8.615850e-47 |
| Msa0653510 | Msa1376890 | 0.834464 | 2.952514e-56 | -8.615850e-47 |
| Msa0653510 | Msa1378760 | 0.823958 | 1.046408e-53 | -8.615850e-47 |
| Msa0653510 | Msa1379850 | 0.817253 | 3.629870e-52 | -8.615850e-47 |
| Msa0653510 | Msa1384350 | 0.800150 | 1.649121e-48 | -8.615850e-47 |
| Msa0653510 | Msa1390050 | 0.803757 | 2.993307e-49 | -8.615850e-47 |
| Msa0653510 | Msa1392260 | 0.808344 | 3.244001e-50 | -8.615850e-47 |
| Msa0653510 | Msa1393410 | 0.828865 | 7.088265e-55 | -8.615850e-47 |
| Msa0653510 | Msa1401530 | 0.818692 | 1.716284e-52 | -8.615850e-47 |
| Msa0653510 | Msa1404540 | 0.802330 | 5.904175e-49 | -8.615850e-47 |
| Msa0653510 | Msa1408790 | 0.801462 | 8.901834e-49 | -8.615850e-47 |
| Msa0653510 | Msa1427760 | 0.816524 | 5.289986e-52 | -8.615850e-47 |
| Msa0653510 | Msa1429900 | 0.813532 | 2.440662e-51 | -8.615850e-47 |
| Msa0653510 | Msa1435420 | 0.825670 | 4.130607e-54 | -8.615850e-47 |
| Msa0653510 | Msa1444250 | -0.803603 | 3.222454e-49 | -8.615850e-47 |
| Msa0653510 | Msa1445610 | -0.800249 | 1.574462e-48 | -8.615850e-47 |
| Msa0653510 | Msa1451620 | -0.839143 | 1.890069e-57 | -8.615850e-47 |
| Msa0653510 | Msa1457670 | -0.812912 | 3.338477e-51 | -8.615850e-47 |
| Msa0653510 | Msa1461250 | -0.818950 | 1.500217e-52 | -8.615850e-47 |
| Msa0653510 | Msa1461300 | 0.807892 | 4.048309e-50 | -8.615850e-47 |
| Msa0653510 | Msa1464940 | 0.815525 | 8.839805e-52 | -8.615850e-47 |
| Msa0157290 | Msa0653510 | 0.813894 | 2.031532e-51 | -8.615850e-47 |
| Msa0188630 | Msa0653510 | 0.800054 | 1.725142e-48 | -8.615850e-47 |
| Msa0197660 | Msa0653510 | 0.800706 | 1.270953e-48 | -8.615850e-47 |
| Msa0201070 | Msa0653510 | 0.808611 | 2.844557e-50 | -8.615850e-47 |
| Msa0210450 | Msa0653510 | 0.805510 | 1.289295e-49 | -8.615850e-47 |
| Msa0217400 | Msa0653510 | 0.803613 | 3.206535e-49 | -8.615850e-47 |
| Msa0220580 | Msa0653510 | 0.835068 | 2.080061e-56 | -8.615850e-47 |
| Msa0220740 | Msa0653510 | 0.825744 | 3.967487e-54 | -8.615850e-47 |
| Msa0223410 | Msa0653510 | -0.825218 | 5.285060e-54 | -8.615850e-47 |
| Msa0226890 | Msa0653510 | 0.808620 | 2.832174e-50 | -8.615850e-47 |
| Msa0230770 | Msa0653510 | 0.805230 | 1.475881e-49 | -8.615850e-47 |
| Msa0237660 | Msa0653510 | 0.801331 | 9.470091e-49 | -8.615850e-47 |
| Msa0370110 | Msa0653510 | 0.814812 | 1.273238e-51 | -8.615850e-47 |
| Msa0373930 | Msa0653510 | 0.820557 | 6.442257e-53 | -8.615850e-47 |
| Msa0376590 | Msa0653510 | 0.806405 | 8.359865e-50 | -8.615850e-47 |
| Msa0395790 | Msa0653510 | 0.801556 | 8.516763e-49 | -8.615850e-47 |
| Msa0414950 | Msa0653510 | -0.811464 | 6.911419e-51 | -8.615850e-47 |
| Msa0436370 | Msa0653510 | 0.815286 | 9.993274e-52 | -8.615850e-47 |
| Msa0442850 | Msa0653510 | 0.827910 | 1.205263e-54 | -8.615850e-47 |
| Msa0443290 | Msa0653510 | 0.802452 | 5.573108e-49 | -8.615850e-47 |
| Msa0448550 | Msa0653510 | -0.817880 | 2.621187e-52 | -8.615850e-47 |
| Msa0449590 | Msa0653510 | -0.802670 | 5.025177e-49 | -8.615850e-47 |
| Msa0454440 | Msa0653510 | 0.807723 | 4.398296e-50 | -8.615850e-47 |
| Msa0459770 | Msa0653510 | -0.805052 | 1.607622e-49 | -8.615850e-47 |
| Msa0464900 | Msa0653510 | 0.800391 | 1.473116e-48 | -8.615850e-47 |
| Msa0473240 | Msa0653510 | 0.842082 | 3.212880e-58 | -8.615850e-47 |
| Msa0480980 | Msa0653510 | 0.837425 | 5.236641e-57 | -8.615850e-47 |
| Msa0482190 | Msa0653510 | -0.814329 | 1.628434e-51 | -8.615850e-47 |
| Msa0243460 | Msa0653510 | 0.803543 | 3.315741e-49 | -8.615850e-47 |
| Msa0243710 | Msa0653510 | 0.830989 | 2.152121e-55 | -8.615850e-47 |
| Msa0258760 | Msa0653510 | 0.847009 | 1.516665e-59 | -8.615850e-47 |
| Msa0260810 | Msa0653510 | 0.803200 | 3.905594e-49 | -8.615850e-47 |
| Msa0265380 | Msa0653510 | 0.833502 | 5.140159e-56 | -8.615850e-47 |
| Msa0265820 | Msa0653510 | 0.812619 | 3.870898e-51 | -8.615850e-47 |
| Msa0266000 | Msa0653510 | -0.825578 | 4.343656e-54 | -8.615850e-47 |
| Msa0270270 | Msa0653510 | 0.815225 | 1.030924e-51 | -8.615850e-47 |
| Msa0287650 | Msa0653510 | 0.801184 | 1.014961e-48 | -8.615850e-47 |
| Msa0296560 | Msa0653510 | 0.800781 | 1.226926e-48 | -8.615850e-47 |
| Msa0296760 | Msa0653510 | 0.805139 | 1.542005e-49 | -8.615850e-47 |
| Msa0303360 | Msa0653510 | 0.814646 | 1.385757e-51 | -8.615850e-47 |
| Msa0323080 | Msa0653510 | 0.807072 | 6.042199e-50 | -8.615850e-47 |
| Msa0331920 | Msa0653510 | 0.812448 | 4.217297e-51 | -8.615850e-47 |
| Msa0333720 | Msa0653510 | -0.845896 | 3.050121e-59 | -8.615850e-47 |
| Msa0334350 | Msa0653510 | 0.803851 | 2.861916e-49 | -8.615850e-47 |
| Msa0335040 | Msa0653510 | 0.821152 | 4.700824e-53 | -8.615850e-47 |
| Msa0344830 | Msa0653510 | 0.826309 | 2.910975e-54 | -8.615850e-47 |
| Msa0344870 | Msa0653510 | 0.808805 | 2.585703e-50 | -8.615850e-47 |
| Msa0350870 | Msa0653510 | 0.801764 | 7.717833e-49 | -8.615850e-47 |
| Msa0356890 | Msa0653510 | -0.819789 | 9.659306e-53 | -8.615850e-47 |
| Msa0484780 | Msa0653510 | 0.814899 | 1.217862e-51 | -8.615850e-47 |
| Msa0485500 | Msa0653510 | -0.804168 | 2.458945e-49 | -8.615850e-47 |
| Msa0492880 | Msa0653510 | 0.826570 | 2.522798e-54 | -8.615850e-47 |
| Msa0498220 | Msa0653510 | 0.827702 | 1.352300e-54 | -8.615850e-47 |
| Msa0517490 | Msa0653510 | 0.807151 | 5.813503e-50 | -8.615850e-47 |
| Msa0524890 | Msa0653510 | -0.808114 | 3.630464e-50 | -8.615850e-47 |
| Msa0533070 | Msa0653510 | 0.824007 | 1.018956e-53 | -8.615850e-47 |
| Msa0536220 | Msa0653510 | 0.805998 | 1.018372e-49 | -8.615850e-47 |
| Msa0548280 | Msa0653510 | -0.833065 | 6.605656e-56 | -8.615850e-47 |
| Msa0553460 | Msa0653510 | 0.801635 | 8.203193e-49 | -8.615850e-47 |
| Msa0555020 | Msa0653510 | 0.814787 | 1.289645e-51 | -8.615850e-47 |
| Msa0558690 | Msa0653510 | 0.811016 | 8.644093e-51 | -8.615850e-47 |
| Msa0563840 | Msa0653510 | 0.806968 | 6.355593e-50 | -8.615850e-47 |
| Msa0566500 | Msa0653510 | -0.824138 | 9.494369e-54 | -8.615850e-47 |
| Msa0567020 | Msa0653510 | 0.811618 | 6.396860e-51 | -8.615850e-47 |
| Msa0572480 | Msa0653510 | 0.819683 | 1.020878e-52 | -8.615850e-47 |
| Msa0579390 | Msa0653510 | 0.800725 | 1.259462e-48 | -8.615850e-47 |
| Msa0581760 | Msa0653510 | 0.837246 | 5.819603e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653510 | MtrunA17_Chr1g0210231 | 78.000 | 50 | 10 | 1 | 1 | 49 | 225 | 274 | 2.06e-18 | 79.0 |
| Msa0653510 | MtrunA17_Chr8g0360481 | 68.000 | 50 | 15 | 1 | 1 | 49 | 207 | 256 | 5.31e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653510 | AT3G10420.1 | 74.000 | 50 | 12 | 1 | 1 | 49 | 236 | 285 | 1.46e-15 | 71.2 |
| Msa0653510 | AT3G10420.2 | 74.000 | 50 | 12 | 1 | 1 | 49 | 236 | 285 | 2.05e-15 | 70.9 |
| Msa0653510 | AT1G73170.2 | 58.491 | 53 | 21 | 1 | 1 | 52 | 92 | 144 | 4.58e-12 | 61.2 |
| Msa0653510 | AT1G73170.1 | 62.000 | 50 | 18 | 1 | 1 | 49 | 220 | 269 | 5.51e-12 | 60.8 |
| Msa0653510 | AT1G73170.3 | 62.000 | 50 | 18 | 1 | 1 | 49 | 220 | 269 | 5.51e-12 | 60.8 |
Find 31 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGTCCCTCATTTGGCTTT+GGG | 0.238096 | 4_3:+61548600 | Msa0653510:CDS |
| TCTAGTCCCTCATTTGGCTT+TGG | 0.282579 | 4_3:+61548599 | Msa0653510:CDS |
| GTGGATACATCCAATGAAAT+TGG | 0.303806 | 4_3:+61546288 | Msa0653510:CDS |
| ACAAAGATGATGCAAGAAAA+TGG | 0.304915 | 4_3:+61548639 | Msa0653510:CDS |
| GGTGGAGATGTTCTTCTTGC+AGG | 0.311714 | 4_3:+61546312 | Msa0653510:CDS |
| CAATGCTGCATATTCACATT+TGG | 0.366625 | 4_3:-61546363 | None:intergenic |
| CATCTTTGTCTCTATTCTAT+AGG | 0.368076 | 4_3:-61548625 | None:intergenic |
| ATCTCCACCTCCAATTTCAT+TGG | 0.369281 | 4_3:-61546298 | None:intergenic |
| CGTGAAGCACGTAGCGATAG+TGG | 0.405578 | 4_3:+61546269 | Msa0653510:CDS |
| GGTTCCTCTAGTCCCTCATT+TGG | 0.423441 | 4_3:+61548593 | Msa0653510:CDS |
| GTGTGAAGGATTCAACAATA+TGG | 0.437580 | 4_3:+61548775 | Msa0653510:CDS |
| TGTAAAGAGGATTCATGTAT+TGG | 0.451962 | 4_3:+61548552 | Msa0653510:CDS |
| TGGTGGCTCTTCATTGCTGC+CGG | 0.475420 | 4_3:+61548572 | Msa0653510:CDS |
| ACAATATGGCAAATTGCAAA+TGG | 0.475777 | 4_3:+61548789 | Msa0653510:CDS |
| TAGTCCCTCATTTGGCTTTG+GGG | 0.481397 | 4_3:+61548601 | Msa0653510:CDS |
| GATGTTCTTCTTGCAGGCAT+AGG | 0.494679 | 4_3:+61546318 | Msa0653510:CDS |
| AAATGAGGGACTAGAGGAAC+CGG | 0.504340 | 4_3:-61548591 | None:intergenic |
| GAATCCTTCACACTATCTGC+AGG | 0.534749 | 4_3:-61548765 | None:intergenic |
| ACATCCAATGAAATTGGAGG+TGG | 0.549569 | 4_3:+61546294 | Msa0653510:CDS |
| TAGGTCCCCAAAGCCAAATG+AGG | 0.552454 | 4_3:-61548606 | None:intergenic |
| ATACATGAATCCTCTTTACA+TGG | 0.553024 | 4_3:-61548549 | None:intergenic |
| AGGATTAGAACCATGTAAAG+AGG | 0.573849 | 4_3:+61548539 | Msa0653510:intron |
| AGCACCTGCAGATAGTGTGA+AGG | 0.594876 | 4_3:+61548761 | Msa0653510:intron |
| AAAGAGGATTCATGTATTGG+TGG | 0.596504 | 4_3:+61548555 | Msa0653510:CDS |
| GATACATCCAATGAAATTGG+AGG | 0.601573 | 4_3:+61546291 | Msa0653510:CDS |
| GTGAATATGCAGCATTGTGT+TGG | 0.623077 | 4_3:+61546369 | Msa0653510:CDS |
| TCTTCTTGCAGGCATAGGCA+AGG | 0.624584 | 4_3:+61546323 | Msa0653510:CDS |
| TTGCAGGCATAGGCAAGGCA+AGG | 0.626398 | 4_3:+61546328 | Msa0653510:CDS |
| AGGTCCCCAAAGCCAAATGA+GGG | 0.631355 | 4_3:-61548605 | None:intergenic |
| AAAGCCAAATGAGGGACTAG+AGG | 0.635489 | 4_3:-61548597 | None:intergenic |
| CAGGCATAGGCAAGGCAAGG+AGG | 0.679532 | 4_3:+61546331 | Msa0653510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCGATAAAAAAATAAAAAAT+AGG | - | chr4_3:61547215-61547234 | None:intergenic | 10.0% |
| !! | TTAGATTAATTAACAAAAAA+AGG | + | chr4_3:61547307-61547326 | Msa0653510:intron | 10.0% |
| !! | TTATTTAAATGAAAAAAATG+AGG | + | chr4_3:61548130-61548149 | Msa0653510:intron | 10.0% |
| !! | TATTTAAATGAAAAAAATGA+GGG | + | chr4_3:61548131-61548150 | Msa0653510:intron | 10.0% |
| !!! | ATAAATTTTGAACATACAAA+AGG | + | chr4_3:61548674-61548693 | Msa0653510:intron | 15.0% |
| !! | AAGAATAGTGATTATAAATG+AGG | - | chr4_3:61546720-61546739 | None:intergenic | 20.0% |
| !! | TTGTTAAAAGGATATTCATT+TGG | - | chr4_3:61546864-61546883 | None:intergenic | 20.0% |
| !!! | AATACCAATCTCTATTATTT+TGG | + | chr4_3:61546938-61546957 | Msa0653510:intron | 20.0% |
| !! | GCAATTAAATATTATCCTTT+GGG | - | chr4_3:61547099-61547118 | None:intergenic | 20.0% |
| !! | AGCAATTAAATATTATCCTT+TGG | - | chr4_3:61547100-61547119 | None:intergenic | 20.0% |
| !!! | TTAAGTAGCATTTTTTTAGT+AGG | + | chr4_3:61547159-61547178 | Msa0653510:intron | 20.0% |
| !! | AATAAAAAATAGGTAAGTGA+GGG | - | chr4_3:61547205-61547224 | None:intergenic | 20.0% |
| !! | AAATAAAAAATAGGTAAGTG+AGG | - | chr4_3:61547206-61547225 | None:intergenic | 20.0% |
| !! | AAAGATCTACAATTACATAA+AGG | - | chr4_3:61547260-61547279 | None:intergenic | 20.0% |
| !! | AACATAAATGAAAATACTCT+TGG | + | chr4_3:61547722-61547741 | Msa0653510:intron | 20.0% |
| !! | AATAACAAAAATATTGAGTG+AGG | + | chr4_3:61547918-61547937 | Msa0653510:intron | 20.0% |
| !! | TGTTGAAGTTTAAATAATAC+TGG | + | chr4_3:61547978-61547997 | Msa0653510:intron | 20.0% |
| !! | AAGTTTAAATAATACTGGAA+TGG | + | chr4_3:61547983-61548002 | Msa0653510:intron | 20.0% |
| !! | AGTTTAAATAATACTGGAAT+GGG | + | chr4_3:61547984-61548003 | Msa0653510:intron | 20.0% |
| !! | ATTTCTACCTATTTAACATT+TGG | + | chr4_3:61548096-61548115 | Msa0653510:intron | 20.0% |
| !!! | TGTTAATGAACCATTTTTTT+TGG | + | chr4_3:61548484-61548503 | Msa0653510:intron | 20.0% |
| !!! | TTTTCTTTGTCCAAAAAAAA+TGG | - | chr4_3:61548497-61548516 | None:intergenic | 20.0% |
| !! | TAAATACATCATATTCTGAT+TGG | - | chr4_3:61548742-61548761 | None:intergenic | 20.0% |
| ! | AGTCAAACATATCACAAAAA+GGG | - | chr4_3:61546441-61546460 | None:intergenic | 25.0% |
| ! | TTGATGTTGAGATCTAAATT+GGG | - | chr4_3:61546487-61546506 | None:intergenic | 25.0% |
| ! | TTTGATGTTGAGATCTAAAT+TGG | - | chr4_3:61546488-61546507 | None:intergenic | 25.0% |
| ! | GACTTACATAAAATGAAGTT+TGG | - | chr4_3:61546532-61546551 | None:intergenic | 25.0% |
| ! | GTGAAATATTAGTGTAAATG+AGG | - | chr4_3:61546791-61546810 | None:intergenic | 25.0% |
| !! | TCACTAAAAAATCAGTGTTT+TGG | + | chr4_3:61546807-61546826 | Msa0653510:intron | 25.0% |
| ! | GTAGTGTTATGATTGTTAAA+AGG | - | chr4_3:61546876-61546895 | None:intergenic | 25.0% |
| ! | GAAACCAAAATAATAGAGAT+TGG | - | chr4_3:61546945-61546964 | None:intergenic | 25.0% |
| !!! | TTTTTAGTAGGATCATTTGA+TGG | + | chr4_3:61547171-61547190 | Msa0653510:intron | 25.0% |
| ! | AGGTTCTCAAAAAGATAAAA+AGG | - | chr4_3:61547240-61547259 | None:intergenic | 25.0% |
| ! | AGAACAAATTGTAAAGTCAA+AGG | + | chr4_3:61547547-61547566 | Msa0653510:intron | 25.0% |
| ! | ACAATAACACAGGAAAAAAT+TGG | - | chr4_3:61547757-61547776 | None:intergenic | 25.0% |
| !!! | TTTTTCCTGTGTTATTGTAT+AGG | + | chr4_3:61547759-61547778 | Msa0653510:intron | 25.0% |
| ! | GTTTAAATAATACTGGAATG+GGG | + | chr4_3:61547985-61548004 | Msa0653510:intron | 25.0% |
| ! | TTGATTCTCATGTAAATGAT+AGG | + | chr4_3:61548519-61548538 | Msa0653510:intron | 25.0% |
| CAGTCAAACATATCACAAAA+AGG | - | chr4_3:61546442-61546461 | None:intergenic | 30.0% | |
| TGATGTTGAGATCTAAATTG+GGG | - | chr4_3:61546486-61546505 | None:intergenic | 30.0% | |
| GTAAGTCAAAAAAATCACCT+TGG | + | chr4_3:61546545-61546564 | Msa0653510:intron | 30.0% | |
| AAAATTTAGCATATGCTCCA+AGG | - | chr4_3:61546565-61546584 | None:intergenic | 30.0% | |
| ! | TTTTCAATCACCATGAATGA+AGG | + | chr4_3:61546599-61546618 | Msa0653510:intron | 30.0% |
| TAGTAAGGTTTATGTCAAGA+AGG | - | chr4_3:61546647-61546666 | None:intergenic | 30.0% | |
| !!! | GGGAAGGTATTATTTTAGTA+AGG | - | chr4_3:61546662-61546681 | None:intergenic | 30.0% |
| ! | TTTTCAGTGATCTAGATAGA+AGG | - | chr4_3:61546911-61546930 | None:intergenic | 30.0% |
| TCTATCTAGATCACTGAAAA+TGG | + | chr4_3:61546911-61546930 | Msa0653510:intron | 30.0% | |
| GCATAATATCATGATGCAAT+TGG | - | chr4_3:61547449-61547468 | None:intergenic | 30.0% | |
| CTTTCAATCTATCTCAAGTT+GGG | - | chr4_3:61547475-61547494 | None:intergenic | 30.0% | |
| TCTTTCAATCTATCTCAAGT+TGG | - | chr4_3:61547476-61547495 | None:intergenic | 30.0% | |
| ! | GACTTTACAATTTGTTCTCA+AGG | - | chr4_3:61547545-61547564 | None:intergenic | 30.0% |
| TAGTCACAGCTTAAAATGTA+GGG | - | chr4_3:61547604-61547623 | None:intergenic | 30.0% | |
| ATAGTCACAGCTTAAAATGT+AGG | - | chr4_3:61547605-61547624 | None:intergenic | 30.0% | |
| TGAATCCTATACAATAACAC+AGG | - | chr4_3:61547767-61547786 | None:intergenic | 30.0% | |
| TAATACAATTACACACGCAA+AGG | - | chr4_3:61547828-61547847 | None:intergenic | 30.0% | |
| ACAAAAATATTGAGTGAGGA+CGG | + | chr4_3:61547922-61547941 | Msa0653510:intron | 30.0% | |
| ! | TTTTCATCAACTTTCTGTGA+TGG | + | chr4_3:61548021-61548040 | Msa0653510:intron | 30.0% |
| ! | AACTTTCTGTGATGGAATAT+AGG | + | chr4_3:61548029-61548048 | Msa0653510:intron | 30.0% |
| CTTCAAGCCAAATGTTAAAT+AGG | - | chr4_3:61548106-61548125 | None:intergenic | 30.0% | |
| ATACATGAATCCTCTTTACA+TGG | - | chr4_3:61548552-61548571 | None:intergenic | 30.0% | |
| TGTAAAGAGGATTCATGTAT+TGG | + | chr4_3:61548552-61548571 | Msa0653510:CDS | 30.0% | |
| CATCTTTGTCTCTATTCTAT+AGG | - | chr4_3:61548628-61548647 | None:intergenic | 30.0% | |
| ACAAAGATGATGCAAGAAAA+TGG | + | chr4_3:61548639-61548658 | Msa0653510:CDS | 30.0% | |
| AACATACAAAAGGAGAAGAA+AGG | + | chr4_3:61548684-61548703 | Msa0653510:intron | 30.0% | |
| AAAGGAAAAACAACTCATGA+AGG | + | chr4_3:61548702-61548721 | Msa0653510:intron | 30.0% | |
| ACAATATGGCAAATTGCAAA+TGG | + | chr4_3:61548789-61548808 | Msa0653510:CDS | 30.0% | |
| GTGGATACATCCAATGAAAT+TGG | + | chr4_3:61546288-61546307 | Msa0653510:CDS | 35.0% | |
| GATACATCCAATGAAATTGG+AGG | + | chr4_3:61546291-61546310 | Msa0653510:CDS | 35.0% | |
| CAATGCTGCATATTCACATT+TGG | - | chr4_3:61546366-61546385 | None:intergenic | 35.0% | |
| ATGAAGGGTTTATATAGGGA+AGG | - | chr4_3:61546678-61546697 | None:intergenic | 35.0% | |
| GGTGATGAAGGGTTTATATA+GGG | - | chr4_3:61546682-61546701 | None:intergenic | 35.0% | |
| ! | TGGTGATGAAGGGTTTATAT+AGG | - | chr4_3:61546683-61546702 | None:intergenic | 35.0% |
| ATGAGGAAAAGTGATGCAAA+TGG | - | chr4_3:61546703-61546722 | None:intergenic | 35.0% | |
| !! | AAAAATCAGTGTTTTGGACC+TGG | + | chr4_3:61546813-61546832 | Msa0653510:intron | 35.0% |
| !! | AAAATCAGTGTTTTGGACCT+GGG | + | chr4_3:61546814-61546833 | Msa0653510:intron | 35.0% |
| ! | ATTTGGCATCTGTGATTTTG+AGG | - | chr4_3:61546847-61546866 | None:intergenic | 35.0% |
| AATTGCTCAGTTTAGTGCTT+TGG | + | chr4_3:61547113-61547132 | Msa0653510:intron | 35.0% | |
| AAAAAATAGGTAAGTGAGGG+AGG | - | chr4_3:61547202-61547221 | None:intergenic | 35.0% | |
| ATGATGACACATTCTCTAGA+TGG | + | chr4_3:61547504-61547523 | Msa0653510:intron | 35.0% | |
| CAAAAATATTGAGTGAGGAC+GGG | + | chr4_3:61547923-61547942 | Msa0653510:intron | 35.0% | |
| ! | AGACATTCAAGATTTTGAGC+TGG | + | chr4_3:61548295-61548314 | Msa0653510:intron | 35.0% |
| ! | GACATTCAAGATTTTGAGCT+GGG | + | chr4_3:61548296-61548315 | Msa0653510:intron | 35.0% |
| TCAAAGTTTCCCAATGTGTT+TGG | - | chr4_3:61548351-61548370 | None:intergenic | 35.0% | |
| AGGATTAGAACCATGTAAAG+AGG | + | chr4_3:61548539-61548558 | Msa0653510:intron | 35.0% | |
| AAAGAGGATTCATGTATTGG+TGG | + | chr4_3:61548555-61548574 | Msa0653510:CDS | 35.0% | |
| GTGTGAAGGATTCAACAATA+TGG | + | chr4_3:61548775-61548794 | Msa0653510:CDS | 35.0% | |
| ACATCCAATGAAATTGGAGG+TGG | + | chr4_3:61546294-61546313 | Msa0653510:CDS | 40.0% | |
| ATCTCCACCTCCAATTTCAT+TGG | - | chr4_3:61546301-61546320 | None:intergenic | 40.0% | |
| GTGAATATGCAGCATTGTGT+TGG | + | chr4_3:61546369-61546388 | Msa0653510:CDS | 40.0% | |
| GTTGAGATCTAAATTGGGGA+AGG | - | chr4_3:61546482-61546501 | None:intergenic | 40.0% | |
| ACAATGCACTCCTTCATTCA+TGG | - | chr4_3:61546612-61546631 | None:intergenic | 40.0% | |
| ! | GTGATGCAAATGGTGATGAA+GGG | - | chr4_3:61546693-61546712 | None:intergenic | 40.0% |
| ! | AGTGATGCAAATGGTGATGA+AGG | - | chr4_3:61546694-61546713 | None:intergenic | 40.0% |
| ACACATACAGTGCTCAGTTT+AGG | + | chr4_3:61547064-61547083 | Msa0653510:intron | 40.0% | |
| TTTAGGTCTCAACATCCCAA+AGG | + | chr4_3:61547081-61547100 | Msa0653510:intron | 40.0% | |
| ! | TAGTAGGATCATTTGATGGC+TGG | + | chr4_3:61547175-61547194 | Msa0653510:intron | 40.0% |
| !! | CAATCTATCTCAAGTTGGGT+AGG | - | chr4_3:61547471-61547490 | None:intergenic | 40.0% |
| ! | TAAAATGTAGGGAGGTGTGA+AGG | - | chr4_3:61547593-61547612 | None:intergenic | 40.0% |
| TCACAGCTTAAAATGTAGGG+AGG | - | chr4_3:61547601-61547620 | None:intergenic | 40.0% | |
| ATGGGATTCACAATCTTGCT+TGG | + | chr4_3:61547686-61547705 | Msa0653510:intron | 40.0% | |
| TGGGATTCACAATCTTGCTT+GGG | + | chr4_3:61547687-61547706 | Msa0653510:intron | 40.0% | |
| GGGAGATTAGAATGCATTGA+AGG | + | chr4_3:61548316-61548335 | Msa0653510:intron | 40.0% | |
| GAATGCATTGAAGGAGTTGT+TGG | + | chr4_3:61548325-61548344 | Msa0653510:intron | 40.0% | |
| AGTTGTTGGCCAAACACATT+GGG | + | chr4_3:61548339-61548358 | Msa0653510:intron | 40.0% | |
| ACATTGGGAAACTTTGACGA+AGG | + | chr4_3:61548354-61548373 | Msa0653510:intron | 40.0% | |
| GAGTTATGTGAAAGCAAAGC+TGG | - | chr4_3:61548385-61548404 | None:intergenic | 40.0% | |
| GATGTTCTTCTTGCAGGCAT+AGG | + | chr4_3:61546318-61546337 | Msa0653510:CDS | 45.0% | |
| TGTTCTGCCGTCTCAAATCT+TGG | + | chr4_3:61547657-61547676 | Msa0653510:intron | 45.0% | |
| GTTCTGCCGTCTCAAATCTT+GGG | + | chr4_3:61547658-61547677 | Msa0653510:intron | 45.0% | |
| TCCCAACCCAAGATTTGAGA+CGG | - | chr4_3:61547667-61547686 | None:intergenic | 45.0% | |
| !! | TCTCAAATCTTGGGTTGGGA+TGG | + | chr4_3:61547667-61547686 | Msa0653510:intron | 45.0% |
| !! | CTCAAATCTTGGGTTGGGAT+GGG | + | chr4_3:61547668-61547687 | Msa0653510:intron | 45.0% |
| GAGTTGTTGGCCAAACACAT+TGG | + | chr4_3:61548338-61548357 | Msa0653510:intron | 45.0% | |
| AAATGAGGGACTAGAGGAAC+CGG | - | chr4_3:61548594-61548613 | None:intergenic | 45.0% | |
| AAAGCCAAATGAGGGACTAG+AGG | - | chr4_3:61548600-61548619 | None:intergenic | 45.0% | |
| ! | TCTAGTCCCTCATTTGGCTT+TGG | + | chr4_3:61548599-61548618 | Msa0653510:CDS | 45.0% |
| !! | CTAGTCCCTCATTTGGCTTT+GGG | + | chr4_3:61548600-61548619 | Msa0653510:CDS | 45.0% |
| !! | TAGTCCCTCATTTGGCTTTG+GGG | + | chr4_3:61548601-61548620 | Msa0653510:CDS | 45.0% |
| GAATCCTTCACACTATCTGC+AGG | - | chr4_3:61548768-61548787 | None:intergenic | 45.0% | |
| !! | AATATATTGTATTATTATAT+AGG | + | chr4_3:61548179-61548198 | Msa0653510:intron | 5.0% |
| GGTGGAGATGTTCTTCTTGC+AGG | + | chr4_3:61546312-61546331 | Msa0653510:CDS | 50.0% | |
| TCTTCTTGCAGGCATAGGCA+AGG | + | chr4_3:61546323-61546342 | Msa0653510:CDS | 50.0% | |
| TGCCGTCTCAAATCTTGGGT+TGG | + | chr4_3:61547662-61547681 | Msa0653510:intron | 50.0% | |
| GCCGTCTCAAATCTTGGGTT+GGG | + | chr4_3:61547663-61547682 | Msa0653510:intron | 50.0% | |
| GGTTCCTCTAGTCCCTCATT+TGG | + | chr4_3:61548593-61548612 | Msa0653510:CDS | 50.0% | |
| AGGTCCCCAAAGCCAAATGA+GGG | - | chr4_3:61548608-61548627 | None:intergenic | 50.0% | |
| TAGGTCCCCAAAGCCAAATG+AGG | - | chr4_3:61548609-61548628 | None:intergenic | 50.0% | |
| AGCACCTGCAGATAGTGTGA+AGG | + | chr4_3:61548761-61548780 | Msa0653510:intron | 50.0% | |
| CGTGAAGCACGTAGCGATAG+TGG | + | chr4_3:61546269-61546288 | Msa0653510:CDS | 55.0% | |
| TTGCAGGCATAGGCAAGGCA+AGG | + | chr4_3:61546328-61546347 | Msa0653510:CDS | 55.0% | |
| !! | GATTTTGAGGACGTGCTCCC+AGG | - | chr4_3:61546834-61546853 | None:intergenic | 55.0% |
| TGGTGGCTCTTCATTGCTGC+CGG | + | chr4_3:61548572-61548591 | Msa0653510:CDS | 55.0% | |
| CAGGCATAGGCAAGGCAAGG+AGG | + | chr4_3:61546331-61546350 | Msa0653510:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 61546252 | 61548818 | 61546252 | ID=Msa0653510;Name=Msa0653510 |
| chr4_3 | mRNA | 61546252 | 61548818 | 61546252 | ID=Msa0653510-mRNA-1;Parent=Msa0653510;Name=Msa0653510-mRNA-1;_AED=0.68;_eAED=0.68;_QI=0|0|0|0.33|1|1|3|0|105 |
| chr4_3 | exon | 61546252 | 61546390 | 61546252 | ID=Msa0653510-mRNA-1:exon:16903;Parent=Msa0653510-mRNA-1 |
| chr4_3 | exon | 61548541 | 61548663 | 61548541 | ID=Msa0653510-mRNA-1:exon:16904;Parent=Msa0653510-mRNA-1 |
| chr4_3 | exon | 61548763 | 61548818 | 61548763 | ID=Msa0653510-mRNA-1:exon:16905;Parent=Msa0653510-mRNA-1 |
| chr4_3 | CDS | 61546252 | 61546390 | 61546252 | ID=Msa0653510-mRNA-1:cds;Parent=Msa0653510-mRNA-1 |
| chr4_3 | CDS | 61548541 | 61548663 | 61548541 | ID=Msa0653510-mRNA-1:cds;Parent=Msa0653510-mRNA-1 |
| chr4_3 | CDS | 61548763 | 61548818 | 61548763 | ID=Msa0653510-mRNA-1:cds;Parent=Msa0653510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
