Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321260 | sp|Q2RAP3|ORR9_ORYSJ | 70.807 | 161 | 42 | 2 | 1 | 160 | 1 | 157 | 1.09e-75 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321260 | Q1RU46 | 94.972 | 179 | 7 | 1 | 1 | 179 | 1 | 177 | 1.44e-119 | 344 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1321260 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1321260 | 0.802021 | 6.835998e-49 | -8.615850e-47 |
| Msa0668220 | Msa1321260 | 0.801194 | 1.009988e-48 | -8.615850e-47 |
| Msa0685080 | Msa1321260 | 0.818032 | 2.422622e-52 | -8.615850e-47 |
| Msa0814160 | Msa1321260 | 0.819331 | 1.228403e-52 | -8.615850e-47 |
| Msa0150910 | Msa1321260 | 0.804564 | 2.033683e-49 | -8.615850e-47 |
| Msa0150920 | Msa1321260 | 0.815549 | 8.732600e-52 | -8.615850e-47 |
| Msa0177550 | Msa1321260 | 0.816106 | 6.559573e-52 | -8.615850e-47 |
| Msa0209060 | Msa1321260 | 0.800702 | 1.273022e-48 | -8.615850e-47 |
| Msa1321260 | Msa1355340 | 0.819659 | 1.034021e-52 | -8.615850e-47 |
| Msa1321260 | Msa1411550 | 0.801913 | 7.194577e-49 | -8.615850e-47 |
| Msa0366510 | Msa1321260 | 0.816431 | 5.549497e-52 | -8.615850e-47 |
| Msa0374040 | Msa1321260 | 0.811967 | 5.370907e-51 | -8.615850e-47 |
| Msa0418160 | Msa1321260 | 0.816362 | 5.750905e-52 | -8.615850e-47 |
| Msa0444230 | Msa1321260 | 0.803098 | 4.099628e-49 | -8.615850e-47 |
| Msa0464310 | Msa1321260 | 0.817836 | 2.681750e-52 | -8.615850e-47 |
| Msa0469450 | Msa1321260 | 0.801003 | 1.105379e-48 | -8.615850e-47 |
| Msa1006170 | Msa1321260 | 0.802250 | 6.132852e-49 | -8.615850e-47 |
| Msa1022490 | Msa1321260 | 0.802009 | 6.874128e-49 | -8.615850e-47 |
| Msa1022510 | Msa1321260 | 0.812434 | 4.247922e-51 | -8.615850e-47 |
| Msa1087380 | Msa1321260 | 0.816827 | 4.524560e-52 | -8.615850e-47 |
| Msa1106680 | Msa1321260 | 0.819104 | 1.383803e-52 | -8.615850e-47 |
| Msa0281190 | Msa1321260 | 0.809660 | 1.695524e-50 | -8.615850e-47 |
| Msa0287720 | Msa1321260 | 0.811761 | 5.956250e-51 | -8.615850e-47 |
| Msa0288540 | Msa1321260 | 0.809617 | 1.732086e-50 | -8.615850e-47 |
| Msa0346170 | Msa1321260 | 0.801943 | 7.094281e-49 | -8.615850e-47 |
| Msa0515130 | Msa1321260 | 0.818561 | 1.838244e-52 | -8.615850e-47 |
| Msa0515150 | Msa1321260 | 0.810216 | 1.287153e-50 | -8.615850e-47 |
| Msa0538450 | Msa1321260 | 0.810485 | 1.125888e-50 | -8.615850e-47 |
| Msa0538520 | Msa1321260 | 0.809603 | 1.743594e-50 | -8.615850e-47 |
| Msa0854840 | Msa1321260 | 0.818766 | 1.651919e-52 | -8.615850e-47 |
| Msa0896920 | Msa1321260 | 0.813864 | 2.062666e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321260 | MtrunA17_Chr8g0352871 | 94.972 | 179 | 7 | 1 | 1 | 179 | 1 | 177 | 2.78e-123 | 344 |
| Msa1321260 | MtrunA17_Chr3g0082861 | 81.529 | 157 | 25 | 3 | 8 | 162 | 3 | 157 | 3.62e-85 | 248 |
| Msa1321260 | MtrunA17_Chr7g0256551 | 73.077 | 156 | 41 | 1 | 1 | 155 | 1 | 156 | 1.86e-81 | 241 |
| Msa1321260 | MtrunA17_Chr3g0124861 | 58.125 | 160 | 56 | 2 | 6 | 155 | 19 | 177 | 1.01e-58 | 183 |
| Msa1321260 | MtrunA17_Chr4g0059571 | 54.762 | 168 | 64 | 3 | 4 | 170 | 21 | 177 | 1.70e-53 | 169 |
| Msa1321260 | MtrunA17_Chr5g0414931 | 57.746 | 142 | 56 | 1 | 8 | 149 | 15 | 152 | 2.49e-52 | 167 |
| Msa1321260 | MtrunA17_Chr1g0170741 | 59.859 | 142 | 52 | 2 | 8 | 149 | 7 | 143 | 6.34e-51 | 162 |
| Msa1321260 | MtrunA17_Chr3g0118211 | 52.174 | 161 | 60 | 3 | 4 | 156 | 18 | 169 | 1.59e-50 | 161 |
| Msa1321260 | MtrunA17_Chr3g0128691 | 57.246 | 138 | 49 | 3 | 10 | 145 | 19 | 148 | 3.10e-48 | 154 |
| Msa1321260 | MtrunA17_Chr4g0021731 | 79.787 | 94 | 11 | 1 | 1 | 94 | 3 | 88 | 4.45e-48 | 151 |
| Msa1321260 | MtrunA17_Chr8g0376881 | 29.193 | 161 | 90 | 4 | 11 | 167 | 31 | 171 | 3.79e-15 | 72.4 |
| Msa1321260 | MtrunA17_Chr8g0345901 | 28.777 | 139 | 82 | 1 | 11 | 149 | 38 | 159 | 8.67e-15 | 71.2 |
| Msa1321260 | MtrunA17_Chr7g0275891 | 31.159 | 138 | 76 | 3 | 11 | 148 | 11 | 129 | 2.01e-13 | 67.0 |
| Msa1321260 | MtrunA17_Chr7g0275401 | 30.714 | 140 | 77 | 3 | 9 | 148 | 9 | 128 | 2.06e-13 | 66.6 |
| Msa1321260 | MtrunA17_Chr3g0123131 | 27.273 | 165 | 93 | 4 | 11 | 168 | 19 | 163 | 4.53e-13 | 66.2 |
| Msa1321260 | MtrunA17_Chr1g0149851 | 31.159 | 138 | 75 | 3 | 11 | 148 | 11 | 128 | 8.49e-13 | 65.5 |
| Msa1321260 | MtrunA17_Chr1g0149841 | 30.435 | 138 | 76 | 3 | 11 | 148 | 11 | 128 | 1.32e-12 | 65.1 |
| Msa1321260 | MtrunA17_Chr1g0161431 | 28.276 | 145 | 84 | 3 | 11 | 155 | 17 | 141 | 1.62e-12 | 64.7 |
| Msa1321260 | MtrunA17_Chr3g0127941 | 28.058 | 139 | 83 | 2 | 11 | 149 | 58 | 179 | 2.46e-12 | 64.3 |
| Msa1321260 | MtrunA17_Chr4g0030271 | 30.882 | 136 | 77 | 2 | 11 | 146 | 91 | 209 | 3.74e-12 | 63.9 |
| Msa1321260 | MtrunA17_Chr4g0074411 | 27.711 | 166 | 99 | 4 | 11 | 176 | 24 | 168 | 4.87e-12 | 63.5 |
| Msa1321260 | MtrunA17_Chr3g0137101 | 27.381 | 168 | 93 | 4 | 11 | 178 | 14 | 152 | 7.37e-12 | 62.8 |
| Msa1321260 | MtrunA17_Chr4g0067981 | 28.082 | 146 | 85 | 3 | 9 | 154 | 35 | 160 | 1.60e-11 | 62.0 |
| Msa1321260 | MtrunA17_Chr1g0181811 | 27.941 | 136 | 81 | 1 | 11 | 146 | 87 | 205 | 3.94e-11 | 60.8 |
| Msa1321260 | MtrunA17_Chr7g0276361 | 26.087 | 138 | 85 | 1 | 9 | 146 | 14 | 134 | 8.08e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321260 | AT2G41310.1 | 52.995 | 217 | 61 | 1 | 1 | 176 | 1 | 217 | 6.96e-75 | 224 |
| Msa1321260 | AT3G57040.2 | 67.284 | 162 | 45 | 2 | 1 | 157 | 1 | 159 | 1.01e-73 | 221 |
| Msa1321260 | AT3G57040.1 | 67.284 | 162 | 45 | 2 | 1 | 157 | 1 | 159 | 1.01e-73 | 221 |
| Msa1321260 | AT1G59940.1 | 61.429 | 140 | 46 | 2 | 7 | 146 | 31 | 162 | 1.81e-55 | 175 |
| Msa1321260 | AT1G59940.2 | 61.429 | 140 | 46 | 2 | 7 | 146 | 123 | 254 | 1.36e-53 | 173 |
| Msa1321260 | AT1G10470.1 | 60.000 | 140 | 48 | 1 | 7 | 146 | 32 | 163 | 1.38e-53 | 171 |
| Msa1321260 | AT1G10470.3 | 60.000 | 140 | 48 | 1 | 7 | 146 | 18 | 149 | 1.49e-53 | 171 |
| Msa1321260 | AT3G48100.1 | 56.757 | 148 | 55 | 2 | 2 | 148 | 18 | 157 | 1.72e-53 | 168 |
| Msa1321260 | AT5G62920.1 | 60.870 | 138 | 46 | 1 | 9 | 146 | 25 | 154 | 2.01e-52 | 166 |
| Msa1321260 | AT1G19050.1 | 54.795 | 146 | 58 | 1 | 8 | 153 | 23 | 160 | 9.72e-52 | 165 |
| Msa1321260 | AT3G56380.1 | 53.793 | 145 | 60 | 1 | 4 | 148 | 15 | 152 | 1.46e-51 | 162 |
| Msa1321260 | AT2G40670.1 | 53.901 | 141 | 60 | 2 | 8 | 148 | 28 | 163 | 3.88e-50 | 159 |
| Msa1321260 | AT1G74890.1 | 55.172 | 145 | 57 | 1 | 8 | 152 | 17 | 153 | 4.10e-50 | 160 |
| Msa1321260 | AT3G56380.2 | 53.425 | 146 | 60 | 2 | 4 | 148 | 15 | 153 | 8.38e-50 | 158 |
| Msa1321260 | AT2G40670.2 | 53.521 | 142 | 60 | 3 | 8 | 148 | 28 | 164 | 2.14e-48 | 155 |
| Msa1321260 | AT2G07440.1 | 66.667 | 66 | 22 | 0 | 95 | 160 | 9 | 74 | 7.58e-26 | 96.7 |
| Msa1321260 | AT1G10470.2 | 64.151 | 53 | 19 | 0 | 94 | 146 | 35 | 87 | 7.95e-18 | 77.0 |
| Msa1321260 | AT1G67710.1 | 29.861 | 144 | 81 | 3 | 11 | 154 | 13 | 136 | 2.11e-13 | 67.8 |
| Msa1321260 | AT5G60100.7 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 2.20e-13 | 67.4 |
| Msa1321260 | AT5G60100.6 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 2.20e-13 | 67.4 |
| Msa1321260 | AT5G60100.4 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 2.20e-13 | 67.4 |
| Msa1321260 | AT5G60100.2 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 2.51e-13 | 67.4 |
| Msa1321260 | AT5G60100.5 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 3.76e-13 | 67.0 |
| Msa1321260 | AT5G60100.3 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 3.76e-13 | 67.0 |
| Msa1321260 | AT5G60100.1 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 3.76e-13 | 67.0 |
| Msa1321260 | AT5G07210.2 | 31.655 | 139 | 74 | 3 | 10 | 148 | 17 | 134 | 4.55e-13 | 67.0 |
| Msa1321260 | AT2G25180.1 | 28.049 | 164 | 94 | 4 | 3 | 162 | 7 | 150 | 7.51e-13 | 66.2 |
| Msa1321260 | AT5G02810.1 | 29.412 | 136 | 79 | 3 | 11 | 146 | 80 | 198 | 1.70e-12 | 65.1 |
| Msa1321260 | AT5G24470.1 | 26.619 | 139 | 83 | 2 | 11 | 149 | 54 | 173 | 5.03e-11 | 60.8 |
Find 38 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATAGCTGAACTGGTTTC+AGG | 0.198335 | 8_4:+26627753 | None:intergenic |
| CCTCACCTGTTTATCCTAGA+TGG | 0.262329 | 8_4:+26627952 | None:intergenic |
| AGGTATGTCTTTGAAAGATT+TGG | 0.295699 | 8_4:+26628002 | None:intergenic |
| AGTAAGGCCTTGAAATTTCT+TGG | 0.299900 | 8_4:-26629196 | Msa1321260:CDS |
| AGAGAATCAGTTCCATGTTT+TGG | 0.307421 | 8_4:-26629462 | Msa1321260:CDS |
| AAAATCTAAATGCCAACTTT+TGG | 0.343059 | 8_4:+26627614 | None:intergenic |
| TATTGCTTCAGAAATTAATC+AGG | 0.389954 | 8_4:-26629137 | Msa1321260:intron |
| TGATTAATTTCTGAAGCAAT+AGG | 0.390281 | 8_4:+26629139 | None:intergenic |
| CTTACATCTGATAGCTGAAC+TGG | 0.391326 | 8_4:+26627746 | None:intergenic |
| TACAGTTGATTCCGCTAGTA+AGG | 0.395161 | 8_4:-26629212 | Msa1321260:CDS |
| ATGTTCCATCTAGGATAAAC+AGG | 0.425302 | 8_4:-26627957 | Msa1321260:intron |
| AAGCAAACCAAGAAATTTCA+AGG | 0.430996 | 8_4:+26629189 | None:intergenic |
| TATTGTATGCCAGGGATGAC+TGG | 0.449232 | 8_4:-26628994 | Msa1321260:CDS |
| ATAACAGATTATTGTATGCC+AGG | 0.463952 | 8_4:-26629003 | Msa1321260:CDS |
| GAAATTTCTTGGTTTGCTTG+AGG | 0.464582 | 8_4:-26629185 | Msa1321260:CDS |
| TTTGTTGAAATCAAAAGTTA+AGG | 0.471711 | 8_4:-26627708 | Msa1321260:CDS |
| AACAACCTATCAACATCAAA+AGG | 0.471937 | 8_4:-26627676 | Msa1321260:CDS |
| TTGTAATTGTATCAGATGTT+TGG | 0.481004 | 8_4:-26627798 | Msa1321260:intron |
| CAACATCAAAAGGAGGGGTA+TGG | 0.485959 | 8_4:-26627666 | Msa1321260:CDS |
| TCTGAGGACATTATCACAAC+AGG | 0.486527 | 8_4:+26627982 | None:intergenic |
| CCTCAGAGAATGTTCCATCT+AGG | 0.494035 | 8_4:-26627966 | Msa1321260:CDS |
| TGTATCAGATGTTTGGAAGA+GGG | 0.502137 | 8_4:-26627791 | Msa1321260:intron |
| TTGTATCAGATGTTTGGAAG+AGG | 0.508259 | 8_4:-26627792 | Msa1321260:intron |
| TTGATAGAATGTTGATTGAG+AGG | 0.516155 | 8_4:-26629421 | Msa1321260:CDS |
| GATAAAACTAGGCCAAAAGT+TGG | 0.541987 | 8_4:-26627626 | Msa1321260:CDS |
| AGATCATAGCCAGTCATCCC+TGG | 0.546401 | 8_4:+26628985 | None:intergenic |
| ACCTATCAACATCAAAAGGA+GGG | 0.550631 | 8_4:-26627672 | Msa1321260:CDS |
| TAACAGATTATTGTATGCCA+GGG | 0.564090 | 8_4:-26629002 | Msa1321260:CDS |
| TATCATCAACAGCCAAAACA+TGG | 0.580138 | 8_4:+26629450 | None:intergenic |
| GTTTGCTTGAGGATGAAATG+AGG | 0.583679 | 8_4:-26629174 | Msa1321260:CDS |
| GTCAATCACCAGATAAAACT+AGG | 0.591896 | 8_4:-26627637 | Msa1321260:CDS |
| TATCTCTCAAGTAATGGGCA+TGG | 0.605342 | 8_4:-26629489 | None:intergenic |
| GTATCAGATGTTTGGAAGAG+GGG | 0.607171 | 8_4:-26627790 | Msa1321260:intron |
| TATCAGATGTTTGGAAGAGG+GGG | 0.611980 | 8_4:-26627789 | Msa1321260:intron |
| CCTATCAACATCAAAAGGAG+GGG | 0.627145 | 8_4:-26627671 | Msa1321260:CDS |
| AACCTATCAACATCAAAAGG+AGG | 0.630458 | 8_4:-26627673 | Msa1321260:CDS |
| AAATTTCAAGGCCTTACTAG+CGG | 0.637282 | 8_4:+26629201 | None:intergenic |
| CCTAGATGGAACATTCTCTG+AGG | 0.709864 | 8_4:+26627966 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAAAATAATAAATTTGTT+CGG | - | chr8_4:26628443-26628462 | Msa1321260:intron | 10.0% |
| !!! | AGTTTTTTAATTTTTTACAT+TGG | + | chr8_4:26628481-26628500 | None:intergenic | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr8_4:26628509-26628528 | Msa1321260:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr8_4:26628557-26628576 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr8_4:26628558-26628577 | None:intergenic | 10.0% |
| !!! | TCTAAAATAATAAATTTGTT+CGG | - | chr8_4:26628443-26628462 | Msa1321260:intron | 10.0% |
| !!! | AGTTTTTTAATTTTTTACAT+TGG | + | chr8_4:26628481-26628500 | None:intergenic | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr8_4:26628509-26628528 | Msa1321260:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr8_4:26628557-26628576 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr8_4:26628558-26628577 | None:intergenic | 10.0% |
| !!! | TTGTATAGTCTATTATTTTT+TGG | - | chr8_4:26627802-26627821 | Msa1321260:intron | 15.0% |
| !! | TACTGAATTGATAAATATTA+TGG | - | chr8_4:26627991-26628010 | Msa1321260:CDS | 15.0% |
| !!! | TATTTTGCTTTTCTATTTAT+AGG | - | chr8_4:26628296-26628315 | Msa1321260:intron | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | - | chr8_4:26628405-26628424 | Msa1321260:intron | 15.0% |
| !!! | GATTAGTTAATTGAAAATTT+GGG | + | chr8_4:26628945-26628964 | None:intergenic | 15.0% |
| !!! | AGATTAGTTAATTGAAAATT+TGG | + | chr8_4:26628946-26628965 | None:intergenic | 15.0% |
| !!! | TTGTATAGTCTATTATTTTT+TGG | - | chr8_4:26627802-26627821 | Msa1321260:intron | 15.0% |
| !! | TACTGAATTGATAAATATTA+TGG | - | chr8_4:26627991-26628010 | Msa1321260:CDS | 15.0% |
| !!! | TATTTTGCTTTTCTATTTAT+AGG | - | chr8_4:26628296-26628315 | Msa1321260:intron | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | - | chr8_4:26628405-26628424 | Msa1321260:intron | 15.0% |
| !!! | GATTAGTTAATTGAAAATTT+GGG | + | chr8_4:26628945-26628964 | None:intergenic | 15.0% |
| !!! | AGATTAGTTAATTGAAAATT+TGG | + | chr8_4:26628946-26628965 | None:intergenic | 15.0% |
| !! | TAGGAAACAATTTAGAAAAT+AGG | - | chr8_4:26628315-26628334 | Msa1321260:intron | 20.0% |
| !! | TCTAAATTAATAAATGTCTC+CGG | - | chr8_4:26628844-26628863 | Msa1321260:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr8_4:26628871-26628890 | None:intergenic | 20.0% |
| !!! | AAATGCAAAGTCTTATATTA+TGG | - | chr8_4:26629238-26629257 | Msa1321260:intron | 20.0% |
| !!! | ACAATTACAAACAATTTGTT+AGG | + | chr8_4:26629287-26629306 | None:intergenic | 20.0% |
| !! | TTTGTTGAAATCAAAAGTTA+AGG | - | chr8_4:26629387-26629406 | Msa1321260:intron | 20.0% |
| !! | TAGGAAACAATTTAGAAAAT+AGG | - | chr8_4:26628315-26628334 | Msa1321260:intron | 20.0% |
| !! | TCTAAATTAATAAATGTCTC+CGG | - | chr8_4:26628844-26628863 | Msa1321260:intron | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr8_4:26628871-26628890 | None:intergenic | 20.0% |
| !!! | AAATGCAAAGTCTTATATTA+TGG | - | chr8_4:26629238-26629257 | Msa1321260:intron | 20.0% |
| !!! | ACAATTACAAACAATTTGTT+AGG | + | chr8_4:26629287-26629306 | None:intergenic | 20.0% |
| !! | TTTGTTGAAATCAAAAGTTA+AGG | - | chr8_4:26629387-26629406 | Msa1321260:intron | 20.0% |
| !! | CATTAAAAGAAGAAGTTTTG+AGG | + | chr8_4:26627702-26627721 | None:intergenic | 25.0% |
| !! | CTCAAAACTTCTTCTTTTAA+TGG | - | chr8_4:26627700-26627719 | Msa1321260:CDS | 25.0% |
| !!! | TGATTAATTTCTGAAGCAAT+AGG | + | chr8_4:26627959-26627978 | None:intergenic | 25.0% |
| ! | TATTGCTTCAGAAATTAATC+AGG | - | chr8_4:26627958-26627977 | Msa1321260:CDS | 25.0% |
| ! | TTTGATTCAATTATTCATGC+AGG | - | chr8_4:26628049-26628068 | Msa1321260:intron | 25.0% |
| ! | TAGACTAATCAAATAACTAG+TGG | + | chr8_4:26628198-26628217 | None:intergenic | 25.0% |
| ! | TTGAATGCATCAAAAAAGTT+TGG | - | chr8_4:26628267-26628286 | Msa1321260:intron | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | + | chr8_4:26628866-26628885 | None:intergenic | 25.0% |
| !! | GGAAATTTTATACCATAACA+CGG | - | chr8_4:26629164-26629183 | Msa1321260:CDS | 25.0% |
| ! | ATATTAGATTAACCGTGTTA+TGG | + | chr8_4:26629179-26629198 | None:intergenic | 25.0% |
| ! | TTGTAATTGTATCAGATGTT+TGG | - | chr8_4:26629297-26629316 | Msa1321260:intron | 25.0% |
| !!! | ACTTTTGATTTCAACAAATG+TGG | + | chr8_4:26629385-26629404 | None:intergenic | 25.0% |
| !! | CATTAAAAGAAGAAGTTTTG+AGG | + | chr8_4:26627702-26627721 | None:intergenic | 25.0% |
| !! | CTCAAAACTTCTTCTTTTAA+TGG | - | chr8_4:26627700-26627719 | Msa1321260:CDS | 25.0% |
| !!! | TGATTAATTTCTGAAGCAAT+AGG | + | chr8_4:26627959-26627978 | None:intergenic | 25.0% |
| ! | TATTGCTTCAGAAATTAATC+AGG | - | chr8_4:26627958-26627977 | Msa1321260:CDS | 25.0% |
| ! | TTTGATTCAATTATTCATGC+AGG | - | chr8_4:26628049-26628068 | Msa1321260:intron | 25.0% |
| ! | TAGACTAATCAAATAACTAG+TGG | + | chr8_4:26628198-26628217 | None:intergenic | 25.0% |
| ! | TTGAATGCATCAAAAAAGTT+TGG | - | chr8_4:26628267-26628286 | Msa1321260:intron | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | + | chr8_4:26628866-26628885 | None:intergenic | 25.0% |
| !! | GGAAATTTTATACCATAACA+CGG | - | chr8_4:26629164-26629183 | Msa1321260:CDS | 25.0% |
| ! | ATATTAGATTAACCGTGTTA+TGG | + | chr8_4:26629179-26629198 | None:intergenic | 25.0% |
| ! | TTGTAATTGTATCAGATGTT+TGG | - | chr8_4:26629297-26629316 | Msa1321260:intron | 25.0% |
| !!! | ACTTTTGATTTCAACAAATG+TGG | + | chr8_4:26629385-26629404 | None:intergenic | 25.0% |
| ! | TTGATAGAATGTTGATTGAG+AGG | - | chr8_4:26627674-26627693 | Msa1321260:CDS | 30.0% |
| AAGCAAACCAAGAAATTTCA+AGG | + | chr8_4:26627909-26627928 | None:intergenic | 30.0% | |
| ATAACAGATTATTGTATGCC+AGG | - | chr8_4:26628092-26628111 | Msa1321260:intron | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | - | chr8_4:26628093-26628112 | Msa1321260:intron | 30.0% | |
| TGATCTGTTGAGAAAAATCA+AGG | - | chr8_4:26628127-26628146 | Msa1321260:intron | 30.0% | |
| CAAAAGTGAGGAAAAAATTG+TGG | + | chr8_4:26628243-26628262 | None:intergenic | 30.0% | |
| GCATTCAAATTTCAAAAGTG+AGG | + | chr8_4:26628255-26628274 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAATCAAG+AGG | + | chr8_4:26628632-26628651 | None:intergenic | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | - | chr8_4:26628750-26628769 | Msa1321260:intron | 30.0% |
| ACTGTACATACCAAACAAAA+AGG | + | chr8_4:26628763-26628782 | None:intergenic | 30.0% | |
| ATCACTTCTCACAATTGATT+TGG | - | chr8_4:26628912-26628931 | Msa1321260:intron | 30.0% | |
| ATGCTTTCCATGAACAATTT+CGG | + | chr8_4:26628973-26628992 | None:intergenic | 30.0% | |
| ATAAAAGTTCATTGATCTGC+AGG | - | chr8_4:26629067-26629086 | Msa1321260:intron | 30.0% | |
| ! | AGGTATGTCTTTGAAAGATT+TGG | + | chr8_4:26629096-26629115 | None:intergenic | 30.0% |
| AACAACCTATCAACATCAAA+AGG | - | chr8_4:26629419-26629438 | Msa1321260:CDS | 30.0% | |
| ! | TTGATAGAATGTTGATTGAG+AGG | - | chr8_4:26627674-26627693 | Msa1321260:CDS | 30.0% |
| AAGCAAACCAAGAAATTTCA+AGG | + | chr8_4:26627909-26627928 | None:intergenic | 30.0% | |
| ATAACAGATTATTGTATGCC+AGG | - | chr8_4:26628092-26628111 | Msa1321260:intron | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | - | chr8_4:26628093-26628112 | Msa1321260:intron | 30.0% | |
| TGATCTGTTGAGAAAAATCA+AGG | - | chr8_4:26628127-26628146 | Msa1321260:intron | 30.0% | |
| CAAAAGTGAGGAAAAAATTG+TGG | + | chr8_4:26628243-26628262 | None:intergenic | 30.0% | |
| GCATTCAAATTTCAAAAGTG+AGG | + | chr8_4:26628255-26628274 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAATCAAG+AGG | + | chr8_4:26628632-26628651 | None:intergenic | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | - | chr8_4:26628750-26628769 | Msa1321260:intron | 30.0% |
| ACTGTACATACCAAACAAAA+AGG | + | chr8_4:26628763-26628782 | None:intergenic | 30.0% | |
| ATCACTTCTCACAATTGATT+TGG | - | chr8_4:26628912-26628931 | Msa1321260:intron | 30.0% | |
| ATGCTTTCCATGAACAATTT+CGG | + | chr8_4:26628973-26628992 | None:intergenic | 30.0% | |
| ATAAAAGTTCATTGATCTGC+AGG | - | chr8_4:26629067-26629086 | Msa1321260:intron | 30.0% | |
| ! | AGGTATGTCTTTGAAAGATT+TGG | + | chr8_4:26629096-26629115 | None:intergenic | 30.0% |
| AACAACCTATCAACATCAAA+AGG | - | chr8_4:26629419-26629438 | Msa1321260:CDS | 30.0% | |
| ! | AGAGAATCAGTTCCATGTTT+TGG | - | chr8_4:26627633-26627652 | Msa1321260:CDS | 35.0% |
| TATCATCAACAGCCAAAACA+TGG | + | chr8_4:26627648-26627667 | None:intergenic | 35.0% | |
| AAATTTCAAGGCCTTACTAG+CGG | + | chr8_4:26627897-26627916 | None:intergenic | 35.0% | |
| AGTAAGGCCTTGAAATTTCT+TGG | - | chr8_4:26627899-26627918 | Msa1321260:intron | 35.0% | |
| !! | GAAATTTCTTGGTTTGCTTG+AGG | - | chr8_4:26627910-26627929 | Msa1321260:intron | 35.0% |
| CTGTTGAGAAAAATCAAGGT+AGG | - | chr8_4:26628131-26628150 | Msa1321260:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr8_4:26628471-26628490 | None:intergenic | 35.0% |
| ! | GGAGATCCCTTTATGATTTT+CGG | - | chr8_4:26628530-26628549 | Msa1321260:intron | 35.0% |
| TTGGGACCGAAAATCATAAA+GGG | + | chr8_4:26628539-26628558 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | + | chr8_4:26628676-26628695 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAGTCTCA+AGG | - | chr8_4:26628698-26628717 | Msa1321260:intron | 35.0% | |
| CGCTGCAATGTAATTCTAAA+AGG | - | chr8_4:26628723-26628742 | Msa1321260:intron | 35.0% | |
| TCTCAATCCGAAATTGTTCA+TGG | - | chr8_4:26628963-26628982 | Msa1321260:intron | 35.0% | |
| ! | ATGTTCCATCTAGGATAAAC+AGG | - | chr8_4:26629138-26629157 | Msa1321260:CDS | 35.0% |
| TTGTATCAGATGTTTGGAAG+AGG | - | chr8_4:26629303-26629322 | Msa1321260:intron | 35.0% | |
| TGTATCAGATGTTTGGAAGA+GGG | - | chr8_4:26629304-26629323 | Msa1321260:intron | 35.0% | |
| AACCTATCAACATCAAAAGG+AGG | - | chr8_4:26629422-26629441 | Msa1321260:CDS | 35.0% | |
| ACCTATCAACATCAAAAGGA+GGG | - | chr8_4:26629423-26629442 | Msa1321260:CDS | 35.0% | |
| GTCAATCACCAGATAAAACT+AGG | - | chr8_4:26629458-26629477 | Msa1321260:CDS | 35.0% | |
| !!! | ACTTTTGGCCTAGTTTTATC+TGG | + | chr8_4:26629469-26629488 | None:intergenic | 35.0% |
| GATAAAACTAGGCCAAAAGT+TGG | - | chr8_4:26629469-26629488 | Msa1321260:CDS | 35.0% | |
| ! | AGAGAATCAGTTCCATGTTT+TGG | - | chr8_4:26627633-26627652 | Msa1321260:CDS | 35.0% |
| TATCATCAACAGCCAAAACA+TGG | + | chr8_4:26627648-26627667 | None:intergenic | 35.0% | |
| AAATTTCAAGGCCTTACTAG+CGG | + | chr8_4:26627897-26627916 | None:intergenic | 35.0% | |
| AGTAAGGCCTTGAAATTTCT+TGG | - | chr8_4:26627899-26627918 | Msa1321260:intron | 35.0% | |
| !! | GAAATTTCTTGGTTTGCTTG+AGG | - | chr8_4:26627910-26627929 | Msa1321260:intron | 35.0% |
| CTGTTGAGAAAAATCAAGGT+AGG | - | chr8_4:26628131-26628150 | Msa1321260:intron | 35.0% | |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr8_4:26628471-26628490 | None:intergenic | 35.0% |
| ! | GGAGATCCCTTTATGATTTT+CGG | - | chr8_4:26628530-26628549 | Msa1321260:intron | 35.0% |
| TTGGGACCGAAAATCATAAA+GGG | + | chr8_4:26628539-26628558 | None:intergenic | 35.0% | |
| ACTACTGTGTTCATATGCAT+TGG | + | chr8_4:26628676-26628695 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAGTCTCA+AGG | - | chr8_4:26628698-26628717 | Msa1321260:intron | 35.0% | |
| CGCTGCAATGTAATTCTAAA+AGG | - | chr8_4:26628723-26628742 | Msa1321260:intron | 35.0% | |
| TCTCAATCCGAAATTGTTCA+TGG | - | chr8_4:26628963-26628982 | Msa1321260:intron | 35.0% | |
| ! | ATGTTCCATCTAGGATAAAC+AGG | - | chr8_4:26629138-26629157 | Msa1321260:CDS | 35.0% |
| TTGTATCAGATGTTTGGAAG+AGG | - | chr8_4:26629303-26629322 | Msa1321260:intron | 35.0% | |
| TGTATCAGATGTTTGGAAGA+GGG | - | chr8_4:26629304-26629323 | Msa1321260:intron | 35.0% | |
| AACCTATCAACATCAAAAGG+AGG | - | chr8_4:26629422-26629441 | Msa1321260:CDS | 35.0% | |
| ACCTATCAACATCAAAAGGA+GGG | - | chr8_4:26629423-26629442 | Msa1321260:CDS | 35.0% | |
| GTCAATCACCAGATAAAACT+AGG | - | chr8_4:26629458-26629477 | Msa1321260:CDS | 35.0% | |
| !!! | ACTTTTGGCCTAGTTTTATC+TGG | + | chr8_4:26629469-26629488 | None:intergenic | 35.0% |
| GATAAAACTAGGCCAAAAGT+TGG | - | chr8_4:26629469-26629488 | Msa1321260:CDS | 35.0% | |
| ! | TACAGTTGATTCCGCTAGTA+AGG | - | chr8_4:26627883-26627902 | Msa1321260:intron | 40.0% |
| GTTTGCTTGAGGATGAAATG+AGG | - | chr8_4:26627921-26627940 | Msa1321260:intron | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr8_4:26628470-26628489 | None:intergenic | 40.0% |
| CTTGGGACCGAAAATCATAA+AGG | + | chr8_4:26628540-26628559 | None:intergenic | 40.0% | |
| TCTGAGGACATTATCACAAC+AGG | + | chr8_4:26629116-26629135 | None:intergenic | 40.0% | |
| ATTGTCTATGCAGTTGCGAT+CGG | - | chr8_4:26629202-26629221 | Msa1321260:CDS | 40.0% | |
| GTATCAGATGTTTGGAAGAG+GGG | - | chr8_4:26629305-26629324 | Msa1321260:intron | 40.0% | |
| TATCAGATGTTTGGAAGAGG+GGG | - | chr8_4:26629306-26629325 | Msa1321260:intron | 40.0% | |
| CTTACATCTGATAGCTGAAC+TGG | + | chr8_4:26629352-26629371 | None:intergenic | 40.0% | |
| CCTATCAACATCAAAAGGAG+GGG | - | chr8_4:26629424-26629443 | Msa1321260:CDS | 40.0% | |
| ! | TACAGTTGATTCCGCTAGTA+AGG | - | chr8_4:26627883-26627902 | Msa1321260:intron | 40.0% |
| GTTTGCTTGAGGATGAAATG+AGG | - | chr8_4:26627921-26627940 | Msa1321260:intron | 40.0% | |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr8_4:26628470-26628489 | None:intergenic | 40.0% |
| CTTGGGACCGAAAATCATAA+AGG | + | chr8_4:26628540-26628559 | None:intergenic | 40.0% | |
| TCTGAGGACATTATCACAAC+AGG | + | chr8_4:26629116-26629135 | None:intergenic | 40.0% | |
| ATTGTCTATGCAGTTGCGAT+CGG | - | chr8_4:26629202-26629221 | Msa1321260:CDS | 40.0% | |
| GTATCAGATGTTTGGAAGAG+GGG | - | chr8_4:26629305-26629324 | Msa1321260:intron | 40.0% | |
| TATCAGATGTTTGGAAGAGG+GGG | - | chr8_4:26629306-26629325 | Msa1321260:intron | 40.0% | |
| CTTACATCTGATAGCTGAAC+TGG | + | chr8_4:26629352-26629371 | None:intergenic | 40.0% | |
| CCTATCAACATCAAAAGGAG+GGG | - | chr8_4:26629424-26629443 | Msa1321260:CDS | 40.0% | |
| TATTGTATGCCAGGGATGAC+TGG | - | chr8_4:26628101-26628120 | Msa1321260:intron | 45.0% | |
| ! | AAATTTGTTCGGTCCCGACT+TGG | - | chr8_4:26628454-26628473 | Msa1321260:intron | 45.0% |
| ! | AATTTGTTCGGTCCCGACTT+GGG | - | chr8_4:26628455-26628474 | Msa1321260:intron | 45.0% |
| CCTAGATGGAACATTCTCTG+AGG | + | chr8_4:26629132-26629151 | None:intergenic | 45.0% | |
| CCTCAGAGAATGTTCCATCT+AGG | - | chr8_4:26629129-26629148 | Msa1321260:intron | 45.0% | |
| CCTCACCTGTTTATCCTAGA+TGG | + | chr8_4:26629146-26629165 | None:intergenic | 45.0% | |
| ! | CCATCTAGGATAAACAGGTG+AGG | - | chr8_4:26629143-26629162 | Msa1321260:CDS | 45.0% |
| ! | CTGATAGCTGAACTGGTTTC+AGG | + | chr8_4:26629345-26629364 | None:intergenic | 45.0% |
| ! | CCCCTCCTTTTGATGTTGAT+AGG | + | chr8_4:26629427-26629446 | None:intergenic | 45.0% |
| CAACATCAAAAGGAGGGGTA+TGG | - | chr8_4:26629429-26629448 | Msa1321260:CDS | 45.0% | |
| TATTGTATGCCAGGGATGAC+TGG | - | chr8_4:26628101-26628120 | Msa1321260:intron | 45.0% | |
| ! | AAATTTGTTCGGTCCCGACT+TGG | - | chr8_4:26628454-26628473 | Msa1321260:intron | 45.0% |
| ! | AATTTGTTCGGTCCCGACTT+GGG | - | chr8_4:26628455-26628474 | Msa1321260:intron | 45.0% |
| CCTAGATGGAACATTCTCTG+AGG | + | chr8_4:26629132-26629151 | None:intergenic | 45.0% | |
| CCTCAGAGAATGTTCCATCT+AGG | - | chr8_4:26629129-26629148 | Msa1321260:intron | 45.0% | |
| CCTCACCTGTTTATCCTAGA+TGG | + | chr8_4:26629146-26629165 | None:intergenic | 45.0% | |
| ! | CCATCTAGGATAAACAGGTG+AGG | - | chr8_4:26629143-26629162 | Msa1321260:CDS | 45.0% |
| ! | CTGATAGCTGAACTGGTTTC+AGG | + | chr8_4:26629345-26629364 | None:intergenic | 45.0% |
| ! | CCCCTCCTTTTGATGTTGAT+AGG | + | chr8_4:26629427-26629446 | None:intergenic | 45.0% |
| CAACATCAAAAGGAGGGGTA+TGG | - | chr8_4:26629429-26629448 | Msa1321260:CDS | 45.0% | |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr8_4:26628508-26628527 | Msa1321260:intron | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr8_4:26628508-26628527 | Msa1321260:intron | 5.0% |
| AGATCATAGCCAGTCATCCC+TGG | + | chr8_4:26628113-26628132 | None:intergenic | 50.0% | |
| AGATCATAGCCAGTCATCCC+TGG | + | chr8_4:26628113-26628132 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 26627619 | 26629498 | 26627619 | ID=Msa1321260;Name=Msa1321260 |
| chr8_4 | mRNA | 26627619 | 26629498 | 26627619 | ID=Msa1321260-mRNA-1;Parent=Msa1321260;Name=Msa1321260-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|5|0|179 |
| chr8_4 | exon | 26629396 | 26629498 | 26629396 | ID=Msa1321260-mRNA-1:exon:9092;Parent=Msa1321260-mRNA-1 |
| chr8_4 | exon | 26629138 | 26629238 | 26629138 | ID=Msa1321260-mRNA-1:exon:9091;Parent=Msa1321260-mRNA-1 |
| chr8_4 | exon | 26628969 | 26629046 | 26628969 | ID=Msa1321260-mRNA-1:exon:9090;Parent=Msa1321260-mRNA-1 |
| chr8_4 | exon | 26627958 | 26628028 | 26627958 | ID=Msa1321260-mRNA-1:exon:9089;Parent=Msa1321260-mRNA-1 |
| chr8_4 | exon | 26627619 | 26627805 | 26627619 | ID=Msa1321260-mRNA-1:exon:9088;Parent=Msa1321260-mRNA-1 |
| chr8_4 | CDS | 26629396 | 26629498 | 26629396 | ID=Msa1321260-mRNA-1:cds;Parent=Msa1321260-mRNA-1 |
| chr8_4 | CDS | 26629138 | 26629238 | 26629138 | ID=Msa1321260-mRNA-1:cds;Parent=Msa1321260-mRNA-1 |
| chr8_4 | CDS | 26628969 | 26629046 | 26628969 | ID=Msa1321260-mRNA-1:cds;Parent=Msa1321260-mRNA-1 |
| chr8_4 | CDS | 26627958 | 26628028 | 26627958 | ID=Msa1321260-mRNA-1:cds;Parent=Msa1321260-mRNA-1 |
| chr8_4 | CDS | 26627619 | 26627805 | 26627619 | ID=Msa1321260-mRNA-1:cds;Parent=Msa1321260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
