AlfalfaGEDB | Msa0515150

M. sativa cultivar zhongmu-4 / Msa0515150

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0515150	XP_013461270.1	86.935	199	26	0	1	199	1	199	1.24e-126	365

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0515150	A0A072VAV1	86.935	199	26	0	1	199	1	199	5.93e-127	365

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa0515150	0.878043	3.864059e-69	-8.615850e-47
Msa0011010	Msa0515150	0.802806	4.709533e-49	-8.615850e-47
Msa0013040	Msa0515150	0.806768	7.006529e-50	-8.615850e-47
Msa0014590	Msa0515150	0.851491	8.575880e-61	-8.615850e-47
Msa0025700	Msa0515150	0.802907	4.489083e-49	-8.615850e-47
Msa0027860	Msa0515150	0.831676	1.458325e-55	-8.615850e-47
Msa0040210	Msa0515150	0.810228	1.279719e-50	-8.615850e-47
Msa0046390	Msa0515150	0.843929	1.035409e-58	-8.615850e-47
Msa0048380	Msa0515150	0.802810	4.701632e-49	-8.615850e-47
Msa0048950	Msa0515150	0.820626	6.209901e-53	-8.615850e-47

Showing 1 to 10 of 410 entries

Previous1 2 3 4 5…41Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0515150	MtrunA17_Chr3g0124141	86.935	199	26	0	1	199	1	199	1.14e-130	365
Msa0515150	MtrunA17_Chr3g0124111	85.930	199	28	0	1	199	1	199	1.81e-130	364
Msa0515150	MtrunA17_Chr3g0124091	83.582	201	30	2	1	199	1	200	2.73e-124	349
Msa0515150	MtrunA17_Chr3g0124061	82.915	199	34	0	1	199	1	199	6.78e-124	348
Msa0515150	MtrunA17_Chr3g0124151	82.075	106	19	0	94	199	1	106	1.18e-59	182
Msa0515150	MtrunA17_Chr3g0124131	88.235	51	6	0	1	51	1	51	3.15e-27	97.8

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0515150	AT5G65030.1	31.980	197	109	7	11	187	10	201	2.04e-25	98.2
Msa0515150	AT5G10210.1	31.633	196	112	7	15	199	13	197	6.00e-24	94.4

Showing 1 to 2 of 2 entries

Previous1Next

Find 37 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTGAAGATGGATT+TGG	0.470551	3_4:-66168104	Msa0515150:CDS
AAAGCCTAGTGTTGGAGCTA+AGG	0.499139	3_4:-66168213	Msa0515150:CDS
ACACTAGGCTTTGTTGATTA+AGG	0.234215	3_4:+66168224	None:intergenic
ACATATGAAGATACATGAGA+TGG	0.585374	3_4:+66168454	None:intergenic
ACGGCCATGACCATCGTGCT+TGG	0.538014	3_4:-66167940	Msa0515150:CDS
ACTAAATGACTCGTCCCAAA+AGG	0.477554	3_4:+66168282	None:intergenic
AGATGGAGAAGCAAAATAAG+AGG	0.509817	3_4:-66167997	Msa0515150:CDS
AGCACCAAGCACGATGGTCA+TGG	0.566327	3_4:+66167936	None:intergenic
AGCTAAGGCAAAGGAAGATA+TGG	0.333930	3_4:-66168198	Msa0515150:CDS
AGTAGCTTCGGTTGCTGAGA+TGG	0.471131	3_4:-66168014	Msa0515150:CDS

Showing 1 to 10 of 37 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACATATGAAGATACATGAGA+TGG	+	chr3_4:66167892-66167911	None:intergenic	30.0%
GATTCTTGAATCACAAAACA+TGG	-	chr3_4:66168209-66168228	Msa0515150:CDS	30.0%
GCTAAAAAAATGGTTGAAGA+TGG	-	chr3_4:66168233-66168252	Msa0515150:CDS	30.0%
TAATCAACAAAGCCTAGTGT+TGG	-	chr3_4:66168122-66168141	Msa0515150:CDS	35.0%
GATTCAAGAATCACTTTCCA+TGG	+	chr3_4:66168201-66168220	None:intergenic	35.0%
AGTCGAAGTGATTACAAAGA+GGG	-	chr3_4:66168264-66168283	Msa0515150:CDS	35.0%
AGATGGAGAAGCAAAATAAG+AGG	-	chr3_4:66168346-66168365	Msa0515150:CDS	35.0%
AATGAGTGTGGATGCAAAAA+CGG	-	chr3_4:66168384-66168403	Msa0515150:CDS	35.0%
GATTGTGATATATTTGCGCT+TGG	-	chr3_4:66168438-66168457	Msa0515150:CDS	35.0%
CTAAATGACTCGTCCCAAAA+GGG	+	chr3_4:66168063-66168082	None:intergenic	40.0%

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	66167883	66168482	66167883	ID=Msa0515150;Name=Msa0515150
chr3_4	mRNA	66167883	66168482	66167883	ID=Msa0515150-mRNA-1;Parent=Msa0515150;Name=Msa0515150-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|199
chr3_4	exon	66167883	66168482	66167883	ID=Msa0515150-mRNA-1:exon:17026;Parent=Msa0515150-mRNA-1
chr3_4	CDS	66167883	66168482	66167883	ID=Msa0515150-mRNA-1:cds;Parent=Msa0515150-mRNA-1

Gene Sequence

>Msa0515150

ATGGATCCATCTCATGTATCTTCATATGTAAACTTCAGCTGTGAATTGAGAATAATACAAGCTCGAAACATTGAATTCATCAAGACGACGAAAAACTTGTTTGCAAGATTGTATCTTCCAACAGAGAACAACAAAAGAATTCAACTCAACAGCAGAAATGTTTCCGCCAAATCATTGCCCTTTTGGGACGAGTCATTTAGTCTAGATTGTTCTTGCCCCCAAGATTTCATGGAAAACCTTAATCAACAAAGCCTAGTGTTGGAGCTAAGGCAAAGGAAGATATGGGGCTCCAAACTAATTGGGAAAGGTGAGATTCCATGGAAAGTGATTCTTGAATCACAAAACATGGAGCTAAAAAAATGGTTGAAGATGGATTTGGTGAGTCGAAGTGATTACAAAGAGGGTATGTTCATAACGCCAGAAGTGGAAGTGGAGATTAAAATAAAAGTAGCTTCGGTTGCTGAGATGGAGAAGCAAAATAAGAGGAGAATGAATAATTTGAATGAGTGTGGATGCAAAAACGGCCATGACCATCGTGCTTGGTGCTGCGCTGAAGATTGTGATATATTTGCGCTTGGCGCAGCTTTGGAGGCTTTTTAA

Protein sequence

>Msa0515150

MDPSHVSSYVNFSCELRIIQARNIEFIKTTKNLFARLYLPTENNKRIQLNSRNVSAKSLPFWDESFSLDCSCPQDFMENLNQQSLVLELRQRKIWGSKLIGKGEIPWKVILESQNMELKKWLKMDLVSRSDYKEGMFITPEVEVEIKIKVASVAEMEKQNKRRMNNLNECGCKNGHDHRAWCCAEDCDIFALGAALEAF*