AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1340980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340980 MtrunA17_Chr1g0201521 100.000 152 0 0 1 152 1 152 5.12e-112 314
Msa1340980 MtrunA17_Chr1g0201481 100.000 152 0 0 1 152 1 152 5.12e-112 314
Msa1340980 MtrunA17_Chr6g0467091 98.684 152 2 0 1 152 1 152 5.31e-111 311
Msa1340980 MtrunA17_Chr5g0409931 94.286 105 6 0 36 140 12 116 2.72e-70 207
Msa1340980 MtrunA17_Chr5g0409851 93.258 89 6 0 52 140 1 89 3.41e-58 176
Msa1340980 MtrunA17_Chr5g0409921 94.382 89 5 0 52 140 1 89 4.30e-58 175
Msa1340980 MtrunA17_Chr5g0409871 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa1340980 MtrunA17_Chr5g0409881 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa1340980 MtrunA17_Chr5g0409861 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa1340980 MtrunA17_Chr5g0409911 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa1340980 MtrunA17_Chr5g0409891 94.382 89 5 0 52 140 1 89 5.53e-58 175
Msa1340980 MtrunA17_Chr5g0409901 95.714 70 3 0 52 121 1 70 1.12e-43 138
Msa1340980 MtrunA17_Chr4g0006461 76.562 64 14 1 67 129 9 72 3.44e-28 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340980 AT4G09800.1 92.763 152 11 0 1 152 1 152 1.97e-105 298
Msa1340980 AT1G34030.1 92.763 152 11 0 1 152 1 152 1.97e-105 298
Msa1340980 AT1G22780.1 92.763 152 11 0 1 152 1 152 1.97e-105 298

Find 53 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAAGTTGAGAGATGATT+TGG 0.279609 tig0004658:+9251 Msa1340980:CDS
CAACTTCATGTCGAGTTGAT+TGG 0.309472 tig0004658:-9238 Msa1340980:intergenic
CTTAAGGCTGTATGTCGCTC+TGG 0.322517 tig0004658:-8633 Msa1340980:intergenic
CGTCCGCAGTTAGGTTAAAA+TGG 0.345502 tig0004658:+8686 Msa1340980:exon
ACCGGGGTTTGAGGCACTAC+TGG 0.376368 tig0004658:+10006 Msa1340980:CDS
TTAAGCGTGATGTCCTGTTT+TGG 0.377769 tig0004658:+10103 Msa1340980:exon
TCCCCTGCGGCCTGTAGTCT+TGG 0.394682 tig0004658:-10054 Msa1340980:intergenic
TTTCATATACCGAGTTTGTA+TGG 0.407920 tig0004658:+10169 Msa1340980:three_prime_UTR
CCGGGGTTTGAGGCACTACT+GGG 0.411270 tig0004658:+10007 Msa1340980:CDS
AAAATCCTCCGTCCGCAGTT+AGG 0.418193 tig0004658:+8677 Msa1340980:five_prime_UTR
AATCATCTAATCTCCAAAAC+AGG 0.431449 tig0004658:-10116 Msa1340980:intergenic
TTCTGTTATGCAGTAATCAC+CGG 0.438670 tig0004658:+9988 Msa1340980:intron
ATACCACCATTCAACTAATC+AGG 0.439185 tig0004658:-10247 Msa1340980:intergenic
TACTGGGGCCTTCGTGTTCG+TGG 0.449083 tig0004658:+10023 Msa1340980:CDS
GTGTTGAACACAAATGTTGA+TGG 0.456259 tig0004658:+8828 Msa1340980:CDS
TGATTGAGGTCATTGCGAAC+TGG 0.463060 tig0004658:-8863 Msa1340980:intergenic
AGAGGGGTAATTGCCGCTTA+AGG 0.471260 tig0004658:-8649 Msa1340980:intergenic
GTTCGCAATGACCTCAATCA+AGG 0.484324 tig0004658:+8866 Msa1340980:CDS
CAAGGATGGCAAATTCTCTC+AGG 0.484690 tig0004658:+9209 Msa1340980:CDS
ATGACCTCAATCAAGGGTAT+TGG 0.493197 tig0004658:+8873 Msa1340980:CDS
GTCAATTCAAGGTTCCAGAT+TGG 0.495981 tig0004658:+9163 Msa1340980:CDS
CAAGTGCCTGATTAGTTGAA+TGG 0.501343 tig0004658:+10241 Msa1340980:three_prime_UTR
CGCTAACATCTGCTGTAAGA+AGG 0.503592 tig0004658:+8905 Msa1340980:CDS
TGCGAATCCTCGTCAATTCA+AGG 0.503849 tig0004658:+9152 Msa1340980:CDS
CCCAGTAGTGCCTCAAACCC+CGG 0.505879 tig0004658:-10007 Msa1340980:intergenic
TGGAGAGACTCAAGAAGATC+CGG 0.512286 tig0004658:+9271 Msa1340980:CDS
TTAAGGCTGTATGTCGCTCT+GGG 0.524110 tig0004658:-8632 Msa1340980:intergenic
GAACAGAAAGAAGGATTACA+AGG 0.525479 tig0004658:+9191 Msa1340980:CDS
GCAGTAATCACCGGGGTTTG+AGG 0.529690 tig0004658:+9997 Msa1340980:intron
TGATGTGTTATAGTCTTTGG+TGG 0.546379 tig0004658:+8776 Msa1340980:intron
AGAAAGAAGGATTACAAGGA+TGG 0.565673 tig0004658:+9195 Msa1340980:CDS
GGTCAGCATACCAAGACTAC+AGG 0.569467 tig0004658:+10044 Msa1340980:CDS
TACCAAGACTACAGGCCGCA+GGG 0.580402 tig0004658:+10052 Msa1340980:CDS
TGAATTGAGTGCCGCAGAGT+TGG 0.583506 tig0004658:+9110 Msa1340980:CDS
CCTACCAATACCCTTGATTG+AGG 0.590405 tig0004658:-8877 Msa1340980:intergenic
ATACCAAGACTACAGGCCGC+AGG 0.594524 tig0004658:+10051 Msa1340980:CDS
TCTGTTATGCAGTAATCACC+GGG 0.594587 tig0004658:+9989 Msa1340980:intron
GGCCGCAGGGGAAAGACTGT+TGG 0.608087 tig0004658:+10065 Msa1340980:CDS
GAGCGACATACAGCCTTAAG+CGG 0.620202 tig0004658:+8636 Msa1340980:five_prime_UTR
GTTGGATAATATTATGACAG+TGG 0.620536 tig0004658:+9128 Msa1340980:CDS
TTCGCAATGACCTCAATCAA+GGG 0.622158 tig0004658:+8867 Msa1340980:CDS
CCTCAATCAAGGGTATTGGT+AGG 0.631523 tig0004658:+8877 Msa1340980:CDS
CCTCTTGTTCATGTCAACAT+CGG 0.651019 tig0004658:-8928 Msa1340980:intergenic
TTTAACCTAACTGCGGACGG+AGG 0.653943 tig0004658:-8682 Msa1340980:intergenic
ACCAAGACTACAGGCCGCAG+GGG 0.654823 tig0004658:+10053 Msa1340980:CDS
CCGATGTTGACATGAACAAG+AGG 0.658386 tig0004658:+8928 Msa1340980:CDS
TCTGGAACCTTGAATTGACG+AGG 0.669518 tig0004658:-9159 Msa1340980:intergenic
CGGGGTTTGAGGCACTACTG+GGG 0.682879 tig0004658:+10008 Msa1340980:CDS
CATAATATTATCCAACTCTG+CGG 0.698001 tig0004658:-9121 Msa1340980:intergenic
GTGCCTGATTAGTTGAATGG+TGG 0.720987 tig0004658:+10244 Msa1340980:three_prime_UTR
CTGTTATGCAGTAATCACCG+GGG 0.730953 tig0004658:+9990 Msa1340980:intron
TATGCTGACCACGAACACGA+AGG 0.739225 tig0004658:-10031 Msa1340970:intergenic
CACCAACAGTCTTTCCCCTG+CGG 0.740988 tig0004658:-10067 Msa1340970:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGTTGTTAAAATTAA+TGG + tig0004658:8991-9010 Msa1340980:intron 10.0%
!!! TTTTTGTTGTTAAAATTAAT+GGG + tig0004658:8992-9011 Msa1340980:intron 10.0%
!! AATTCAATTCAATAATATAA+TGG + tig0004658:9911-9930 Msa1340980:intron 10.0%
!!! ATTTTTGTTGTTAAAATTAA+TGG + tig0004658:8991-9010 Msa1340980:intron 10.0%
!!! TTTTTGTTGTTAAAATTAAT+GGG + tig0004658:8992-9011 Msa1340980:intron 10.0%
!! AATTCAATTCAATAATATAA+TGG + tig0004658:9911-9930 Msa1340980:intron 10.0%
!! AAACAGTTTAATTAATACAA+TGG + tig0004658:9854-9873 Msa1340980:intron 15.0%
!! AAACAGTTTAATTAATACAA+TGG + tig0004658:9854-9873 Msa1340980:intron 15.0%
!!! AATGACTGATTTATAAAAGT+GGG - tig0004658:8974-8993 Msa1340980:intergenic 20.0%
!!! AAATGACTGATTTATAAAAG+TGG - tig0004658:8975-8994 Msa1340980:intergenic 20.0%
!!! TTTGATTTTTAAATGTGAGA+TGG - tig0004658:9033-9052 Msa1340980:intergenic 20.0%
!!! TTTTGATATTGTTGTTGAAA+TGG + tig0004658:9054-9073 Msa1340980:intron 20.0%
!!! TTTGATATTGTTGTTGAAAT+GGG + tig0004658:9055-9074 Msa1340980:intron 20.0%
!!! TTTTGTTGTTGGATTTTTTT+AGG + tig0004658:9082-9101 Msa1340980:intron 20.0%
!!! TTTGTTGTTGGATTTTTTTA+GGG + tig0004658:9083-9102 Msa1340980:intron 20.0%
!! AATACATAGTAAAAAATGCA+AGG - tig0004658:9742-9761 Msa1340980:intergenic 20.0%
!! TATGATATTCATGTTGATAT+AGG + tig0004658:9778-9797 Msa1340980:intron 20.0%
!! ATGATATTCATGTTGATATA+GGG + tig0004658:9779-9798 Msa1340980:intron 20.0%
!!! CAATAAAATTTTAGACTGTT+TGG + tig0004658:9829-9848 Msa1340980:intron 20.0%
!!! AATAATATAATGGATGTATG+TGG + tig0004658:9921-9940 Msa1340980:intron 20.0%
!! AATTAAAAACCATACAAACT+CGG - tig0004658:10181-10200 Msa1340980:intergenic 20.0%
!!! CAGATTTTTTAACTTTCTAA+TGG + tig0004658:10305-10324 Msa1340980:intron 20.0%
!!! AATGACTGATTTATAAAAGT+GGG - tig0004658:8974-8993 Msa1340980:intergenic 20.0%
!!! AAATGACTGATTTATAAAAG+TGG - tig0004658:8975-8994 Msa1340980:intergenic 20.0%
!!! TTTGATTTTTAAATGTGAGA+TGG - tig0004658:9033-9052 Msa1340980:intergenic 20.0%
!!! TTTTGATATTGTTGTTGAAA+TGG + tig0004658:9054-9073 Msa1340980:intron 20.0%
!!! TTTGATATTGTTGTTGAAAT+GGG + tig0004658:9055-9074 Msa1340980:intron 20.0%
!!! TTTTGTTGTTGGATTTTTTT+AGG + tig0004658:9082-9101 Msa1340980:intron 20.0%
!!! TTTGTTGTTGGATTTTTTTA+GGG + tig0004658:9083-9102 Msa1340980:intron 20.0%
!! AATACATAGTAAAAAATGCA+AGG - tig0004658:9742-9761 Msa1340980:intergenic 20.0%
!! TATGATATTCATGTTGATAT+AGG + tig0004658:9778-9797 Msa1340980:intron 20.0%
!! ATGATATTCATGTTGATATA+GGG + tig0004658:9779-9798 Msa1340980:intron 20.0%
!!! CAATAAAATTTTAGACTGTT+TGG + tig0004658:9829-9848 Msa1340980:intron 20.0%
!!! AATAATATAATGGATGTATG+TGG + tig0004658:9921-9940 Msa1340980:intron 20.0%
!! AATTAAAAACCATACAAACT+CGG - tig0004658:10181-10200 Msa1340980:intergenic 20.0%
!!! CAGATTTTTTAACTTTCTAA+TGG + tig0004658:10305-10324 Msa1340980:intron 20.0%
!! AGAATGCGAAAGAAATTTTA+GGG - tig0004658:8606-8625 None:intergenic 25.0%
! ATCATCTTTATAGTTAACAC+AGG - tig0004658:9334-9353 Msa1340980:intergenic 25.0%
! TTAACATTTCAACACTATGT+AGG + tig0004658:9388-9407 Msa1340980:intron 25.0%
! TTAGAACGAGAATTAACTAT+TGG + tig0004658:9470-9489 Msa1340980:intron 25.0%
! GAAAACAAAATACAAGTCAT+TGG - tig0004658:9691-9710 Msa1340980:intergenic 25.0%
!!! ACTTGTATTTTGTTTTCTCT+TGG + tig0004658:9694-9713 Msa1340980:intron 25.0%
! ATTAATACAATGGATGTATG+TGG + tig0004658:9864-9883 Msa1340980:intron 25.0%
!!! TGGTTTTTAATTGAATGCAT+TGG + tig0004658:10189-10208 Msa1340980:three_prime_UTR 25.0%
!! TTGGCAATTTCAATTTTGTT+TGG + tig0004658:10208-10227 Msa1340980:three_prime_UTR 25.0%
! AAAAAATCTGAAGAGCAAAT+TGG - tig0004658:10295-10314 Msa1340980:intergenic 25.0%
!! AGAATGCGAAAGAAATTTTA+GGG - tig0004658:8606-8625 Msa1340980:intergenic 25.0%
! ATCATCTTTATAGTTAACAC+AGG - tig0004658:9334-9353 Msa1340980:intergenic 25.0%
! TTAACATTTCAACACTATGT+AGG + tig0004658:9388-9407 Msa1340980:intron 25.0%
! TTAGAACGAGAATTAACTAT+TGG + tig0004658:9470-9489 Msa1340980:intron 25.0%
! GAAAACAAAATACAAGTCAT+TGG - tig0004658:9691-9710 Msa1340980:intergenic 25.0%
!!! ACTTGTATTTTGTTTTCTCT+TGG + tig0004658:9694-9713 Msa1340980:intron 25.0%
! ATTAATACAATGGATGTATG+TGG + tig0004658:9864-9883 Msa1340980:intron 25.0%
!!! TGGTTTTTAATTGAATGCAT+TGG + tig0004658:10189-10208 Msa1340980:three_prime_UTR 25.0%
!! TTGGCAATTTCAATTTTGTT+TGG + tig0004658:10208-10227 Msa1340980:three_prime_UTR 25.0%
! AAAAAATCTGAAGAGCAAAT+TGG - tig0004658:10295-10314 Msa1340980:intergenic 25.0%
!!! ATTTTAGGGTTTGTGAGAAT+GGG - tig0004658:8592-8611 None:intergenic 30.0%
!!! AATTTTAGGGTTTGTGAGAA+TGG - tig0004658:8593-8612 None:intergenic 30.0%
! GAGAATGCGAAAGAAATTTT+AGG - tig0004658:8607-8626 None:intergenic 30.0%
!! ATACCATTTTAACCTAACTG+CGG - tig0004658:8692-8711 Msa1340980:intergenic 30.0%
TTGTGATGTGTTATAGTCTT+TGG + tig0004658:8773-8792 Msa1340980:intron 30.0%
!!! AAATGGGTTGTTTTTGTTGT+TGG + tig0004658:9071-9090 Msa1340980:intron 30.0%
CATAATATTATCCAACTCTG+CGG - tig0004658:9124-9143 Msa1340980:intergenic 30.0%
GTTGGATAATATTATGACAG+TGG + tig0004658:9128-9147 Msa1340980:CDS 30.0%
TTTCTGTTCAAAAACCAATC+TGG - tig0004658:9180-9199 Msa1340980:intergenic 30.0%
!! TTGGTTTTTGAACAGAAAGA+AGG + tig0004658:9182-9201 Msa1340980:CDS 30.0%
!!! CTCAGTTGGTTTTTTAGTAT+AGG + tig0004658:9359-9378 Msa1340980:intron 30.0%
AGATGTAGTAGTAAGATGAT+AGG + tig0004658:9424-9443 Msa1340980:intron 30.0%
AGTGTTTGAAAATAGAACAG+TGG + tig0004658:9574-9593 Msa1340980:intron 30.0%
GTGTTTGAAAATAGAACAGT+GGG + tig0004658:9575-9594 Msa1340980:intron 30.0%
AATCAAATGTTTCCCATAAG+CGG + tig0004658:9621-9640 Msa1340980:intron 30.0%
AATCATCTAATCTCCAAAAC+AGG - tig0004658:10119-10138 Msa1340980:intergenic 30.0%
! TTGGAGATTAGATGATTTTG+AGG + tig0004658:10122-10141 Msa1340980:three_prime_UTR 30.0%
TTTCATATACCGAGTTTGTA+TGG + tig0004658:10169-10188 Msa1340980:three_prime_UTR 30.0%
!!! ATTTTAGGGTTTGTGAGAAT+GGG - tig0004658:8592-8611 Msa1340980:intergenic 30.0%
!!! AATTTTAGGGTTTGTGAGAA+TGG - tig0004658:8593-8612 Msa1340980:intergenic 30.0%
! GAGAATGCGAAAGAAATTTT+AGG - tig0004658:8607-8626 Msa1340980:intergenic 30.0%
!! ATACCATTTTAACCTAACTG+CGG - tig0004658:8692-8711 Msa1340980:intergenic 30.0%
TTGTGATGTGTTATAGTCTT+TGG + tig0004658:8773-8792 Msa1340980:intron 30.0%
!!! AAATGGGTTGTTTTTGTTGT+TGG + tig0004658:9071-9090 Msa1340980:intron 30.0%
CATAATATTATCCAACTCTG+CGG - tig0004658:9124-9143 Msa1340980:intergenic 30.0%
GTTGGATAATATTATGACAG+TGG + tig0004658:9128-9147 Msa1340980:CDS 30.0%
TTTCTGTTCAAAAACCAATC+TGG - tig0004658:9180-9199 Msa1340980:intergenic 30.0%
!! TTGGTTTTTGAACAGAAAGA+AGG + tig0004658:9182-9201 Msa1340980:CDS 30.0%
!!! CTCAGTTGGTTTTTTAGTAT+AGG + tig0004658:9359-9378 Msa1340980:intron 30.0%
AGATGTAGTAGTAAGATGAT+AGG + tig0004658:9424-9443 Msa1340980:intron 30.0%
AGTGTTTGAAAATAGAACAG+TGG + tig0004658:9574-9593 Msa1340980:intron 30.0%
GTGTTTGAAAATAGAACAGT+GGG + tig0004658:9575-9594 Msa1340980:intron 30.0%
AATCAAATGTTTCCCATAAG+CGG + tig0004658:9621-9640 Msa1340980:intron 30.0%
AATCATCTAATCTCCAAAAC+AGG - tig0004658:10119-10138 Msa1340980:intergenic 30.0%
! TTGGAGATTAGATGATTTTG+AGG + tig0004658:10122-10141 Msa1340980:three_prime_UTR 30.0%
TTTCATATACCGAGTTTGTA+TGG + tig0004658:10169-10188 Msa1340980:three_prime_UTR 30.0%
TGATGTGTTATAGTCTTTGG+TGG + tig0004658:8776-8795 Msa1340980:intron 35.0%
GTGTTGAACACAAATGTTGA+TGG + tig0004658:8828-8847 Msa1340980:CDS 35.0%
!!! TTGTTGGATTTTTTTAGGGC+TGG + tig0004658:9087-9106 Msa1340980:intron 35.0%
GAACAGAAAGAAGGATTACA+AGG + tig0004658:9191-9210 Msa1340980:CDS 35.0%
AGAAAGAAGGATTACAAGGA+TGG + tig0004658:9195-9214 Msa1340980:CDS 35.0%
CATGAAGTTGAGAGATGATT+TGG + tig0004658:9251-9270 Msa1340980:CDS 35.0%
ACAATGAAGTAGCATCTTAC+CGG - tig0004658:9293-9312 Msa1340980:intergenic 35.0%
AAAGATGATTCTCACTCAGT+TGG + tig0004658:9345-9364 Msa1340980:intron 35.0%
ATGGATGTATGTGGAGAAAT+TGG + tig0004658:9930-9949 Msa1340980:intron 35.0%
TGGATGTATGTGGAGAAATT+GGG + tig0004658:9931-9950 Msa1340980:intron 35.0%
GTGATTACTGCATAACAGAA+AGG - tig0004658:9988-10007 Msa1340980:intergenic 35.0%
TTCTGTTATGCAGTAATCAC+CGG + tig0004658:9988-10007 Msa1340980:intron 35.0%
ATACCACCATTCAACTAATC+AGG - tig0004658:10250-10269 Msa1340980:intergenic 35.0%
TGATGTGTTATAGTCTTTGG+TGG + tig0004658:8776-8795 Msa1340980:intron 35.0%
GTGTTGAACACAAATGTTGA+TGG + tig0004658:8828-8847 Msa1340980:CDS 35.0%
!!! TTGTTGGATTTTTTTAGGGC+TGG + tig0004658:9087-9106 Msa1340980:intron 35.0%
GAACAGAAAGAAGGATTACA+AGG + tig0004658:9191-9210 Msa1340980:CDS 35.0%
AGAAAGAAGGATTACAAGGA+TGG + tig0004658:9195-9214 Msa1340980:CDS 35.0%
CATGAAGTTGAGAGATGATT+TGG + tig0004658:9251-9270 Msa1340980:CDS 35.0%
ACAATGAAGTAGCATCTTAC+CGG - tig0004658:9293-9312 Msa1340980:intergenic 35.0%
AAAGATGATTCTCACTCAGT+TGG + tig0004658:9345-9364 Msa1340980:intron 35.0%
ATGGATGTATGTGGAGAAAT+TGG + tig0004658:9930-9949 Msa1340980:intron 35.0%
TGGATGTATGTGGAGAAATT+GGG + tig0004658:9931-9950 Msa1340980:intron 35.0%
GTGATTACTGCATAACAGAA+AGG - tig0004658:9988-10007 Msa1340980:intergenic 35.0%
TTCTGTTATGCAGTAATCAC+CGG + tig0004658:9988-10007 Msa1340980:intron 35.0%
ATACCACCATTCAACTAATC+AGG - tig0004658:10250-10269 Msa1340980:intergenic 35.0%
! ACGGAGGATTTTGTTGAAGA+GGG - tig0004658:8669-8688 Msa1340980:intergenic 40.0%
!! CATTTTAACCTAACTGCGGA+CGG - tig0004658:8688-8707 Msa1340980:intergenic 40.0%
TTCGCAATGACCTCAATCAA+GGG + tig0004658:8867-8886 Msa1340980:CDS 40.0%
! ATGACCTCAATCAAGGGTAT+TGG + tig0004658:8873-8892 Msa1340980:CDS 40.0%
CCTCTTGTTCATGTCAACAT+CGG - tig0004658:8931-8950 Msa1340980:intergenic 40.0%
GTCAATTCAAGGTTCCAGAT+TGG + tig0004658:9163-9182 Msa1340980:CDS 40.0%
!! CAACTTCATGTCGAGTTGAT+TGG - tig0004658:9241-9260 Msa1340980:intergenic 40.0%
!! CGTTCTAAAGCATCAAGCAA+TGG - tig0004658:9458-9477 Msa1340980:intergenic 40.0%
GTTTCCCATAAGCGGAAATA+CGG + tig0004658:9629-9648 Msa1340980:intron 40.0%
TTTCCCATAAGCGGAAATAC+GGG + tig0004658:9630-9649 Msa1340980:intron 40.0%
GGAAATACGGGCAATAGAAT+TGG + tig0004658:9642-9661 Msa1340980:intron 40.0%
GAATTGGACCAAATAGTAGC+TGG + tig0004658:9658-9677 Msa1340980:intron 40.0%
GATAAGAGCCAGCTACTATT+TGG - tig0004658:9669-9688 Msa1340980:intergenic 40.0%
TATGTGGAGAAATTGGGCAT+TGG + tig0004658:9937-9956 Msa1340980:intron 40.0%
TCTGTTATGCAGTAATCACC+GGG + tig0004658:9989-10008 Msa1340980:intron 40.0%
! TTAAGCGTGATGTCCTGTTT+TGG + tig0004658:10103-10122 Msa1340980:exon 40.0%
! CAAGTGCCTGATTAGTTGAA+TGG + tig0004658:10241-10260 Msa1340980:three_prime_UTR 40.0%
GAGCAAATTGGTCATGCTAA+AGG - tig0004658:10283-10302 Msa1340980:intergenic 40.0%
! ACGGAGGATTTTGTTGAAGA+GGG - tig0004658:8669-8688 Msa1340980:intergenic 40.0%
!! CATTTTAACCTAACTGCGGA+CGG - tig0004658:8688-8707 Msa1340980:intergenic 40.0%
TTCGCAATGACCTCAATCAA+GGG + tig0004658:8867-8886 Msa1340980:CDS 40.0%
! ATGACCTCAATCAAGGGTAT+TGG + tig0004658:8873-8892 Msa1340980:CDS 40.0%
CCTCTTGTTCATGTCAACAT+CGG - tig0004658:8931-8950 Msa1340980:intergenic 40.0%
GTCAATTCAAGGTTCCAGAT+TGG + tig0004658:9163-9182 Msa1340980:CDS 40.0%
!! CAACTTCATGTCGAGTTGAT+TGG - tig0004658:9241-9260 Msa1340980:intergenic 40.0%
!! CGTTCTAAAGCATCAAGCAA+TGG - tig0004658:9458-9477 Msa1340980:intergenic 40.0%
GTTTCCCATAAGCGGAAATA+CGG + tig0004658:9629-9648 Msa1340980:intron 40.0%
TTTCCCATAAGCGGAAATAC+GGG + tig0004658:9630-9649 Msa1340980:intron 40.0%
GGAAATACGGGCAATAGAAT+TGG + tig0004658:9642-9661 Msa1340980:intron 40.0%
GAATTGGACCAAATAGTAGC+TGG + tig0004658:9658-9677 Msa1340980:intron 40.0%
GATAAGAGCCAGCTACTATT+TGG - tig0004658:9669-9688 Msa1340980:intergenic 40.0%
TATGTGGAGAAATTGGGCAT+TGG + tig0004658:9937-9956 Msa1340980:intron 40.0%
TCTGTTATGCAGTAATCACC+GGG + tig0004658:9989-10008 Msa1340980:intron 40.0%
! TTAAGCGTGATGTCCTGTTT+TGG + tig0004658:10103-10122 Msa1340980:exon 40.0%
! CAAGTGCCTGATTAGTTGAA+TGG + tig0004658:10241-10260 Msa1340980:three_prime_UTR 40.0%
GAGCAAATTGGTCATGCTAA+AGG - tig0004658:10283-10302 Msa1340980:intergenic 40.0%
TTAAGGCTGTATGTCGCTCT+GGG - tig0004658:8635-8654 None:intergenic 45.0%
! CGGAGGATTTTGTTGAAGAG+GGG - tig0004658:8668-8687 Msa1340980:intergenic 45.0%
! GACGGAGGATTTTGTTGAAG+AGG - tig0004658:8670-8689 Msa1340980:intergenic 45.0%
CGTCCGCAGTTAGGTTAAAA+TGG + tig0004658:8686-8705 Msa1340980:exon 45.0%
TGATTGAGGTCATTGCGAAC+TGG - tig0004658:8866-8885 Msa1340980:intergenic 45.0%
GTTCGCAATGACCTCAATCA+AGG + tig0004658:8866-8885 Msa1340980:CDS 45.0%
CCTACCAATACCCTTGATTG+AGG - tig0004658:8880-8899 Msa1340980:intergenic 45.0%
!! CCTCAATCAAGGGTATTGGT+AGG + tig0004658:8877-8896 Msa1340980:CDS 45.0%
CGCTAACATCTGCTGTAAGA+AGG + tig0004658:8905-8924 Msa1340980:CDS 45.0%
CCGATGTTGACATGAACAAG+AGG + tig0004658:8928-8947 Msa1340980:CDS 45.0%
TGCGAATCCTCGTCAATTCA+AGG + tig0004658:9152-9171 Msa1340980:CDS 45.0%
! TCTGGAACCTTGAATTGACG+AGG - tig0004658:9162-9181 Msa1340980:intergenic 45.0%
CAAGGATGGCAAATTCTCTC+AGG + tig0004658:9209-9228 Msa1340980:CDS 45.0%
TGGAGAGACTCAAGAAGATC+CGG + tig0004658:9271-9290 Msa1340980:CDS 45.0%
ACACGATCAAAGCAATGCAG+TGG - tig0004658:9532-9551 Msa1340980:intergenic 45.0%
TTGCCCGTATTTCCGCTTAT+GGG - tig0004658:9636-9655 Msa1340980:intergenic 45.0%
ATTGCCCGTATTTCCGCTTA+TGG - tig0004658:9637-9656 Msa1340980:intergenic 45.0%
CTGTTATGCAGTAATCACCG+GGG + tig0004658:9990-10009 Msa1340980:intron 45.0%
! GTGCCTGATTAGTTGAATGG+TGG + tig0004658:10244-10263 Msa1340980:three_prime_UTR 45.0%
TTAAGGCTGTATGTCGCTCT+GGG - tig0004658:8635-8654 Msa1340980:intergenic 45.0%
! CGGAGGATTTTGTTGAAGAG+GGG - tig0004658:8668-8687 Msa1340980:intergenic 45.0%
! GACGGAGGATTTTGTTGAAG+AGG - tig0004658:8670-8689 Msa1340980:intergenic 45.0%
CGTCCGCAGTTAGGTTAAAA+TGG + tig0004658:8686-8705 Msa1340980:exon 45.0%
TGATTGAGGTCATTGCGAAC+TGG - tig0004658:8866-8885 Msa1340980:intergenic 45.0%
GTTCGCAATGACCTCAATCA+AGG + tig0004658:8866-8885 Msa1340980:CDS 45.0%
CCTACCAATACCCTTGATTG+AGG - tig0004658:8880-8899 Msa1340980:intergenic 45.0%
!! CCTCAATCAAGGGTATTGGT+AGG + tig0004658:8877-8896 Msa1340980:CDS 45.0%
CGCTAACATCTGCTGTAAGA+AGG + tig0004658:8905-8924 Msa1340980:CDS 45.0%
CCGATGTTGACATGAACAAG+AGG + tig0004658:8928-8947 Msa1340980:CDS 45.0%
TGCGAATCCTCGTCAATTCA+AGG + tig0004658:9152-9171 Msa1340980:CDS 45.0%
! TCTGGAACCTTGAATTGACG+AGG - tig0004658:9162-9181 Msa1340980:intergenic 45.0%
CAAGGATGGCAAATTCTCTC+AGG + tig0004658:9209-9228 Msa1340980:CDS 45.0%
TGGAGAGACTCAAGAAGATC+CGG + tig0004658:9271-9290 Msa1340980:CDS 45.0%
ACACGATCAAAGCAATGCAG+TGG - tig0004658:9532-9551 Msa1340980:intergenic 45.0%
TTGCCCGTATTTCCGCTTAT+GGG - tig0004658:9636-9655 Msa1340980:intergenic 45.0%
ATTGCCCGTATTTCCGCTTA+TGG - tig0004658:9637-9656 Msa1340980:intergenic 45.0%
CTGTTATGCAGTAATCACCG+GGG + tig0004658:9990-10009 Msa1340980:intron 45.0%
! GTGCCTGATTAGTTGAATGG+TGG + tig0004658:10244-10263 Msa1340980:three_prime_UTR 45.0%
CTTAAGGCTGTATGTCGCTC+TGG - tig0004658:8636-8655 None:intergenic 50.0%
GAGCGACATACAGCCTTAAG+CGG + tig0004658:8636-8655 Msa1340980:five_prime_UTR 50.0%
! AGAGGGGTAATTGCCGCTTA+AGG - tig0004658:8652-8671 Msa1340980:intergenic 50.0%
AAAATCCTCCGTCCGCAGTT+AGG + tig0004658:8677-8696 Msa1340980:five_prime_UTR 50.0%
TTTAACCTAACTGCGGACGG+AGG - tig0004658:8685-8704 Msa1340980:intergenic 50.0%
! TGAATTGAGTGCCGCAGAGT+TGG + tig0004658:9110-9129 Msa1340980:CDS 50.0%
CGATCAAAGCAATGCAGTGG+TGG - tig0004658:9529-9548 Msa1340980:intergenic 50.0%
!! TGGAGAAATTGGGCATTGGC+TGG + tig0004658:9941-9960 Msa1340980:intron 50.0%
TATGCTGACCACGAACACGA+AGG - tig0004658:10034-10053 Msa1340980:intergenic 50.0%
GGTCAGCATACCAAGACTAC+AGG + tig0004658:10044-10063 Msa1340980:CDS 50.0%
CTTAAGGCTGTATGTCGCTC+TGG - tig0004658:8636-8655 Msa1340980:intergenic 50.0%
GAGCGACATACAGCCTTAAG+CGG + tig0004658:8636-8655 Msa1340980:five_prime_UTR 50.0%
! AGAGGGGTAATTGCCGCTTA+AGG - tig0004658:8652-8671 Msa1340980:intergenic 50.0%
AAAATCCTCCGTCCGCAGTT+AGG + tig0004658:8677-8696 Msa1340980:five_prime_UTR 50.0%
TTTAACCTAACTGCGGACGG+AGG - tig0004658:8685-8704 Msa1340980:intergenic 50.0%
! TGAATTGAGTGCCGCAGAGT+TGG + tig0004658:9110-9129 Msa1340980:CDS 50.0%
CGATCAAAGCAATGCAGTGG+TGG - tig0004658:9529-9548 Msa1340980:intergenic 50.0%
!! TGGAGAAATTGGGCATTGGC+TGG + tig0004658:9941-9960 Msa1340980:intron 50.0%
TATGCTGACCACGAACACGA+AGG - tig0004658:10034-10053 Msa1340980:intergenic 50.0%
GGTCAGCATACCAAGACTAC+AGG + tig0004658:10044-10063 Msa1340980:CDS 50.0%
! ATGCAGTGGTGGTGCATCAG+CGG - tig0004658:9518-9537 Msa1340980:intergenic 55.0%
GCAGTAATCACCGGGGTTTG+AGG + tig0004658:9997-10016 Msa1340980:intron 55.0%
ATACCAAGACTACAGGCCGC+AGG + tig0004658:10051-10070 Msa1340980:CDS 55.0%
TACCAAGACTACAGGCCGCA+GGG + tig0004658:10052-10071 Msa1340980:CDS 55.0%
CACCAACAGTCTTTCCCCTG+CGG - tig0004658:10070-10089 Msa1340980:intergenic 55.0%
! ATGCAGTGGTGGTGCATCAG+CGG - tig0004658:9518-9537 Msa1340980:intergenic 55.0%
GCAGTAATCACCGGGGTTTG+AGG + tig0004658:9997-10016 Msa1340980:intron 55.0%
ATACCAAGACTACAGGCCGC+AGG + tig0004658:10051-10070 Msa1340980:CDS 55.0%
TACCAAGACTACAGGCCGCA+GGG + tig0004658:10052-10071 Msa1340980:CDS 55.0%
CACCAACAGTCTTTCCCCTG+CGG - tig0004658:10070-10089 Msa1340980:intergenic 55.0%
! ACCGGGGTTTGAGGCACTAC+TGG + tig0004658:10006-10025 Msa1340980:CDS 60.0%
CCCAGTAGTGCCTCAAACCC+CGG - tig0004658:10010-10029 Msa1340980:intergenic 60.0%
! CCGGGGTTTGAGGCACTACT+GGG + tig0004658:10007-10026 Msa1340980:CDS 60.0%
! CGGGGTTTGAGGCACTACTG+GGG + tig0004658:10008-10027 Msa1340980:CDS 60.0%
TACTGGGGCCTTCGTGTTCG+TGG + tig0004658:10023-10042 Msa1340980:CDS 60.0%
ACCAAGACTACAGGCCGCAG+GGG + tig0004658:10053-10072 Msa1340980:CDS 60.0%
! ACCGGGGTTTGAGGCACTAC+TGG + tig0004658:10006-10025 Msa1340980:CDS 60.0%
CCCAGTAGTGCCTCAAACCC+CGG - tig0004658:10010-10029 Msa1340980:intergenic 60.0%
! CCGGGGTTTGAGGCACTACT+GGG + tig0004658:10007-10026 Msa1340980:CDS 60.0%
! CGGGGTTTGAGGCACTACTG+GGG + tig0004658:10008-10027 Msa1340980:CDS 60.0%
TACTGGGGCCTTCGTGTTCG+TGG + tig0004658:10023-10042 Msa1340980:CDS 60.0%
ACCAAGACTACAGGCCGCAG+GGG + tig0004658:10053-10072 Msa1340980:CDS 60.0%
TCCCCTGCGGCCTGTAGTCT+TGG - tig0004658:10057-10076 Msa1340980:intergenic 65.0%
GGCCGCAGGGGAAAGACTGT+TGG + tig0004658:10065-10084 Msa1340980:CDS 65.0%
TCCCCTGCGGCCTGTAGTCT+TGG - tig0004658:10057-10076 Msa1340980:intergenic 65.0%
GGCCGCAGGGGAAAGACTGT+TGG + tig0004658:10065-10084 Msa1340980:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0004658 gene 8588 10360 8588 ID=Msa1340980;Name=Msa1340980
tig0004658 mRNA 8588 10360 8588 ID=Msa1340980-mRNA-1;Parent=Msa1340980;Name=Msa1340980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=117|1|1|1|0.5|0.4|5|222|152
tig0004658 exon 8588 8707 8588 ID=Msa1340980-mRNA-1:exon:2942;Parent=Msa1340980-mRNA-1
tig0004658 exon 8789 8949 8789 ID=Msa1340980-mRNA-1:exon:2943;Parent=Msa1340980-mRNA-1
tig0004658 exon 9104 9292 9104 ID=Msa1340980-mRNA-1:exon:2944;Parent=Msa1340980-mRNA-1
tig0004658 exon 10001 10275 10001 ID=Msa1340980-mRNA-1:exon:2945;Parent=Msa1340980-mRNA-1
tig0004658 exon 10308 10360 10308 ID=Msa1340980-mRNA-1:exon:2946;Parent=Msa1340980-mRNA-1
tig0004658 five_prime_UTR 8588 8704 8588 ID=Msa1340980-mRNA-1:five_prime_utr;Parent=Msa1340980-mRNA-1
tig0004658 CDS 8705 8707 8705 ID=Msa1340980-mRNA-1:cds;Parent=Msa1340980-mRNA-1
tig0004658 CDS 8789 8949 8789 ID=Msa1340980-mRNA-1:cds;Parent=Msa1340980-mRNA-1
tig0004658 CDS 9104 9292 9104 ID=Msa1340980-mRNA-1:cds;Parent=Msa1340980-mRNA-1
tig0004658 CDS 10001 10106 10001 ID=Msa1340980-mRNA-1:cds;Parent=Msa1340980-mRNA-1
tig0004658 three_prime_UTR 10107 10275 10107 ID=Msa1340980-mRNA-1:three_prime_utr;Parent=Msa1340980-mRNA-1
tig0004658 three_prime_UTR 10308 10360 10308 ID=Msa1340980-mRNA-1:three_prime_utr;Parent=Msa1340980-mRNA-1
Gene Sequence

>Msa1340980

ATGTCTTTGGTGGCGAACGAAGAATTTCAGCACATTCTGCGTGTGTTGAACACAAATGTTGATGGAAAGCAGAAGATCCAGTTCGCAATGACCTCAATCAAGGGTATTGGTAGGAGATTCGCTAACATCTGCTGTAAGAAGGCCGATGTTGACATGAACAAGAGGGCTGGTGAATTGAGTGCCGCAGAGTTGGATAATATTATGACAGTGGTTGCGAATCCTCGTCAATTCAAGGTTCCAGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATTCTCTCAGGTTGTCTCCAATCAACTCGACATGAAGTTGAGAGATGATTTGGAGAGACTCAAGAAGATCCGTAATCACCGGGGTTTGAGGCACTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACAGGCCGCAGGGGAAAGACTGTTGGTGTCTCAAAGAAGCGTTAA
Protein sequence

>Msa1340980

MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDNIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*