Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357800 | XP_003621162.1 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 3.41e-102 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357800 | sp|Q9GKX6|GALM_PIG | 43.443 | 122 | 64 | 1 | 31 | 152 | 22 | 138 | 1.15e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357800 | G7KZW8 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 1.63e-102 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa1357800 | 0.806441 | 8.215048e-50 | -8.615850e-47 |
| Msa0064300 | Msa1357800 | 0.802003 | 6.893067e-49 | -8.615850e-47 |
| Msa0109590 | Msa1357800 | 0.800073 | 1.709928e-48 | -8.615850e-47 |
| Msa1355890 | Msa1357800 | 0.815672 | 8.199670e-52 | -8.615850e-47 |
| Msa1357800 | Msa1420270 | 0.805308 | 1.421345e-49 | -8.615850e-47 |
| Msa1357800 | Msa1455490 | 0.800993 | 1.110161e-48 | -8.615850e-47 |
| Msa1357800 | Msa1457160 | 0.800424 | 1.450584e-48 | -8.615850e-47 |
| Msa0820850 | Msa1357800 | 0.809461 | 1.870589e-50 | -8.615850e-47 |
| Msa0135410 | Msa1357800 | 0.810471 | 1.133967e-50 | -8.615850e-47 |
| Msa1224810 | Msa1357800 | 0.804291 | 2.317972e-49 | -8.615850e-47 |
| Msa1231840 | Msa1357800 | 0.815721 | 7.993949e-52 | -8.615850e-47 |
| Msa1257800 | Msa1357800 | -0.801205 | 1.004946e-48 | -8.615850e-47 |
| Msa1312520 | Msa1357800 | 0.826281 | 2.956777e-54 | -8.615850e-47 |
| Msa0398380 | Msa1357800 | 0.800353 | 1.499958e-48 | -8.615850e-47 |
| Msa1087990 | Msa1357800 | 0.804656 | 1.944997e-49 | -8.615850e-47 |
| Msa1104090 | Msa1357800 | 0.808986 | 2.365549e-50 | -8.615850e-47 |
| Msa1107190 | Msa1357800 | 0.825309 | 5.028737e-54 | -8.615850e-47 |
| Msa0256330 | Msa1357800 | 0.801489 | 8.788052e-49 | -8.615850e-47 |
| Msa0295330 | Msa1357800 | 0.802651 | 5.071001e-49 | -8.615850e-47 |
| Msa0340690 | Msa1357800 | 0.801060 | 1.076084e-48 | -8.615850e-47 |
| Msa0357760 | Msa1357800 | 0.821286 | 4.377100e-53 | -8.615850e-47 |
| Msa0357790 | Msa1357800 | 0.819986 | 8.704350e-53 | -8.615850e-47 |
| Msa0357830 | Msa1357800 | 0.827628 | 1.408285e-54 | -8.615850e-47 |
| Msa0357840 | Msa1357800 | 0.820987 | 5.129335e-53 | -8.615850e-47 |
| Msa0357870 | Msa1357800 | 0.807522 | 4.851157e-50 | -8.615850e-47 |
| Msa1180500 | Msa1357800 | 0.826605 | 2.475165e-54 | -8.615850e-47 |
| Msa1181250 | Msa1357800 | 0.803936 | 2.747164e-49 | -8.615850e-47 |
| Msa0844110 | Msa1357800 | 0.800224 | 1.593427e-48 | -8.615850e-47 |
| Msa0849030 | Msa1357800 | 0.811627 | 6.369705e-51 | -8.615850e-47 |
| Msa0861130 | Msa1357800 | 0.810718 | 1.002904e-50 | -8.615850e-47 |
| Msa0888260 | Msa1357800 | 0.803432 | 3.495701e-49 | -8.615850e-47 |
| Msa0927380 | Msa1357800 | 0.801309 | 9.568881e-49 | -8.615850e-47 |
| Msa0944870 | Msa1357800 | 0.811991 | 5.306337e-51 | -8.615850e-47 |
| Msa0952040 | Msa1357800 | 0.804129 | 2.505224e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357800 | MtrunA17_Chr7g0217021 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 3.14e-106 | 307 |
| Msa1357800 | MtrunA17_Chr6g0452991 | 74.051 | 158 | 34 | 4 | 1 | 152 | 1 | 157 | 8.71e-78 | 235 |
| Msa1357800 | MtrunA17_Chr6g0452971 | 72.152 | 158 | 37 | 4 | 1 | 152 | 1 | 157 | 1.12e-73 | 224 |
| Msa1357800 | MtrunA17_Chr4g0060521 | 60.305 | 131 | 49 | 1 | 22 | 152 | 25 | 152 | 1.28e-51 | 167 |
| Msa1357800 | MtrunA17_Chr6g0478501 | 49.242 | 132 | 65 | 2 | 22 | 152 | 2 | 132 | 5.49e-35 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357800 | AT5G15140.1 | 63.077 | 130 | 48 | 0 | 23 | 152 | 155 | 284 | 5.18e-55 | 180 |
| Msa1357800 | AT3G47800.1 | 54.305 | 151 | 65 | 2 | 2 | 152 | 6 | 152 | 8.76e-49 | 160 |
| Msa1357800 | AT3G17940.1 | 51.613 | 124 | 59 | 1 | 30 | 152 | 11 | 134 | 8.60e-39 | 134 |
| Msa1357800 | AT3G01260.1 | 45.385 | 130 | 59 | 2 | 24 | 152 | 115 | 233 | 4.72e-31 | 115 |
Find 35 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGCTCAATTTAATCTAAA+TGG | 0.233195 | tig0016206:-418 | Msa1357800:CDS |
| TTATTTGTGTTTAGGAAAAT+TGG | 0.253965 | tig0016206:-2715 | Msa1357800:intron |
| TGTCTACTCATAGTAGCTTT+TGG | 0.265802 | tig0016206:-2950 | Msa1357800:CDS |
| TCTTGGATATGACTCAATTA+AGG | 0.270414 | tig0016206:-2682 | Msa1357800:CDS |
| TATATGTTTGATCATATAAA+AGG | 0.273283 | tig0016206:+3061 | Msa1357800:intergenic |
| CTTGTGGTGTAGTGGTAATT+TGG | 0.296436 | tig0016206:+3007 | Msa1357800:intergenic |
| AAATTGGCTGATATTGTTCT+TGG | 0.302481 | tig0016206:-2699 | Msa1357800:CDS |
| GAGGATTCGGTGATGTTATC+TGG | 0.317523 | tig0016206:-228 | Msa1357800:CDS |
| ATGTTATCTGGAAAGTTAAA+AGG | 0.341780 | tig0016206:-216 | Msa1357800:CDS |
| CTTCTTCACCATCAAAACTA+TGG | 0.342356 | tig0016206:+152 | Msa1357800:intergenic |
| TTTCTTTAAAAGTCACCAAT+TGG | 0.360947 | tig0016206:-2865 | Msa1357800:CDS |
| TTCTTTAAAAGTCACCAATT+GGG | 0.365099 | tig0016206:-2864 | Msa1357800:CDS |
| CAGAATGATTCAACATACTT+TGG | 0.394714 | tig0016206:-475 | Msa1357800:CDS |
| GAAGGAAACAATACACTTCA+TGG | 0.400316 | tig0016206:-370 | Msa1357800:intron |
| CACAATTGATGCACCCCAAT+TGG | 0.417041 | tig0016206:+2850 | Msa1357800:intergenic |
| TACAGATTAGTTGCTAATGA+AGG | 0.446826 | tig0016206:-388 | Msa1357800:CDS |
| TAGAAGAAGCACAAAGATCT+TGG | 0.447161 | tig0016206:+2973 | Msa1357800:intergenic |
| ATTTGGAATCAAATAAAGAA+GGG | 0.455548 | tig0016206:+3024 | Msa1357800:intergenic |
| ACATACTTTGGAGCTACTGT+TGG | 0.465625 | tig0016206:-463 | Msa1357800:CDS |
| GGAATATTTGAGCTGAAGAA+AGG | 0.468855 | tig0016206:-2893 | Msa1357800:CDS |
| TTAGGTGGATCAAGAGGATT+CGG | 0.489663 | tig0016206:-241 | Msa1357800:intron |
| GGACGGGTTGCCAACAGAAT+AGG | 0.495670 | tig0016206:-442 | Msa1357800:CDS |
| AATTTGGAATCAAATAAAGA+AGG | 0.522613 | tig0016206:+3023 | Msa1357800:intergenic |
| CTTTGGAGCTACTGTTGGAC+GGG | 0.522665 | tig0016206:-458 | Msa1357800:CDS |
| TTGAGCTCCTCCTATTCTGT+TGG | 0.529473 | tig0016206:+432 | Msa1357800:intergenic |
| GTGAAGGTAACGCTGGGACT+AGG | 0.539813 | tig0016206:+178 | Msa1357800:intergenic |
| ACTTTGGAGCTACTGTTGGA+CGG | 0.554231 | tig0016206:-459 | Msa1357800:CDS |
| TCTTTAAAAGTCACCAATTG+GGG | 0.556932 | tig0016206:-2863 | Msa1357800:CDS |
| CGGGTTGCCAACAGAATAGG+AGG | 0.575477 | tig0016206:-439 | Msa1357800:CDS |
| TGTTGATTAGGTGGATCAAG+AGG | 0.586174 | tig0016206:-247 | Msa1357800:intron |
| TTTGGAATCAAATAAAGAAG+GGG | 0.588306 | tig0016206:+3025 | Msa1357800:intergenic |
| ATCAAAACTATGGTAAGTGA+AGG | 0.589873 | tig0016206:+162 | Msa1357800:intergenic |
| ATGGTAAGTGAAGGTAACGC+TGG | 0.623170 | tig0016206:+171 | Msa1357800:intergenic |
| TGGTAAGTGAAGGTAACGCT+GGG | 0.628791 | tig0016206:+172 | Msa1357800:intergenic |
| ATATTTGAGCTGAAGAAAGG+AGG | 0.662506 | tig0016206:-2890 | Msa1357800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTAATAAT+TGG | + | tig0016206:2539-2558 | Msa1357800:intergenic | 0.0% |
| !! | AAATAGTTAATATTAATAGT+TGG | + | tig0016206:828-847 | Msa1357800:intergenic | 10.0% |
| !!! | AATTTTTTTAAAGTTCAAAA+AGG | - | tig0016206:1141-1160 | Msa1357800:intron | 10.0% |
| !!! | ATTTTTTTAAAGTTCAAAAA+GGG | - | tig0016206:1142-1161 | Msa1357800:intron | 10.0% |
| !! | TTATAAGTGAAATAAAAAAA+GGG | + | tig0016206:1876-1895 | Msa1357800:intergenic | 10.0% |
| !! | TTTATAAGTGAAATAAAAAA+AGG | + | tig0016206:1877-1896 | Msa1357800:intergenic | 10.0% |
| !! | AACTAATTATTTACTATATA+TGG | + | tig0016206:2241-2260 | Msa1357800:intergenic | 10.0% |
| !!! | TTTATTTATTTTTTTGTTTG+AGG | - | tig0016206:2289-2308 | Msa1357800:intron | 10.0% |
| !!! | TTTTTTTTTTTAATAATTGG+TGG | + | tig0016206:2536-2555 | Msa1357800:intergenic | 10.0% |
| !! | TATATGTTTGATCATATAAA+AGG | + | tig0016206:165-184 | Msa0135780:intergenic | 15.0% |
| !! | TAATTTGAAGAGAAAAATAT+TGG | + | tig0016206:430-449 | Msa1357800:intergenic | 15.0% |
| !!! | TTTTTATGTTATTTGTGTTT+AGG | - | tig0016206:500-519 | Msa1357800:intron | 15.0% |
| !! | ATTAACTTAAGTATATTTGT+TGG | + | tig0016206:803-822 | Msa1357800:intergenic | 15.0% |
| !!! | TACATTTTGTATATTTGATT+AGG | - | tig0016206:1313-1332 | Msa1357800:intron | 15.0% |
| !! | TTACAATATATTGATGTAAT+TGG | + | tig0016206:1567-1586 | Msa1357800:intergenic | 15.0% |
| !! | TTTCTTCATAATAAAAAAGT+TGG | + | tig0016206:1798-1817 | Msa1357800:intergenic | 15.0% |
| !! | TATTATGAAGAAAAAAGAAA+AGG | - | tig0016206:1805-1824 | Msa1357800:intron | 15.0% |
| !!! | TAAATTTCAATTTTTTTTGG+AGG | + | tig0016206:1937-1956 | Msa1357800:intergenic | 15.0% |
| !!! | TTTATTTTTCATAACAGTTT+TGG | - | tig0016206:1959-1978 | Msa1357800:intron | 15.0% |
| !! | AAAAGATTAAAAATTGTACA+AGG | - | tig0016206:2447-2466 | Msa1357800:intron | 15.0% |
| !!! | ATTTGGAATCAAATAAAGAA+GGG | + | tig0016206:202-221 | Msa0135780:intergenic | 20.0% |
| !!! | AATTTGGAATCAAATAAAGA+AGG | + | tig0016206:203-222 | Msa0135780:intergenic | 20.0% |
| !! | TTATTTGTGTTTAGGAAAAT+TGG | - | tig0016206:508-527 | Msa1357800:intron | 20.0% |
| !! | GTAATACTAATTGAACAATT+AGG | + | tig0016206:698-717 | Msa1357800:intergenic | 20.0% |
| !! | ATGTCATAACTATTGTATTT+AGG | - | tig0016206:733-752 | Msa1357800:intron | 20.0% |
| !! | AAATGTAAACAAATTTCCTT+AGG | - | tig0016206:1068-1087 | Msa1357800:intron | 20.0% |
| !! | GATTCTAATAAATAATCCTA+AGG | + | tig0016206:1087-1106 | Msa1357800:intergenic | 20.0% |
| !! | GTTACATTGTATATTTGATT+AGG | - | tig0016206:1225-1244 | Msa1357800:intron | 20.0% |
| !! | ATTGTATATTTGATTAGGAT+AGG | - | tig0016206:1230-1249 | Msa1357800:intron | 20.0% |
| !! | TTTGTATATTTGATTAGGAT+AGG | - | tig0016206:1318-1337 | Msa1357800:intron | 20.0% |
| !! | TTATCAATCCATTGAAAAAA+GGG | - | tig0016206:1267-1286 | Msa1357800:intron | 20.0% |
| !!! | AAATTTCTTTTTGTTGTCTA+TGG | - | tig0016206:2030-2049 | Msa1357800:intron | 20.0% |
| !! | TAAAAGACTTGTAGAAATAT+TGG | - | tig0016206:2379-2398 | Msa1357800:intron | 20.0% |
| !! | AAAAGACTTGTAGAAATATT+GGG | - | tig0016206:2380-2399 | Msa1357800:intron | 20.0% |
| !! | TTAGATTGAAGACAATAAAT+GGG | - | tig0016206:2504-2523 | Msa1357800:intron | 20.0% |
| !!! | GTATGTTTAATATTTTCCTT+GGG | - | tig0016206:2875-2894 | Msa1357800:CDS | 20.0% |
| !!! | TATGTTTAATATTTTCCTTG+GGG | - | tig0016206:2876-2895 | Msa1357800:CDS | 20.0% |
| !!! | GTAAATGGACTTTATAATTA+AGG | + | tig0016206:2924-2943 | Msa1357800:intergenic | 20.0% |
| !! | TTTGGAATCAAATAAAGAAG+GGG | + | tig0016206:201-220 | Msa0135780:intergenic | 25.0% |
| ! | TCTGATGAAAAAGAAAAGAT+AGG | - | tig0016206:309-328 | Msa1357800:intron | 25.0% |
| !! | TTTCTTTAAAAGTCACCAAT+TGG | - | tig0016206:358-377 | Msa1357800:intron | 25.0% |
| !! | TTCTTTAAAAGTCACCAATT+GGG | - | tig0016206:359-378 | Msa1357800:intron | 25.0% |
| ! | CTTATCAATCCATTGAAAAA+AGG | - | tig0016206:1353-1372 | Msa1357800:intron | 25.0% |
| !! | GATCTGGTTTGAAAATAAAT+AGG | - | tig0016206:1387-1406 | Msa1357800:intron | 25.0% |
| ! | TGGTTACAAAGAAAGAATAA+TGG | + | tig0016206:1509-1528 | Msa1357800:intergenic | 25.0% |
| ! | GTAACCAAAAACTAAATGAA+AGG | - | tig0016206:1522-1541 | Msa1357800:intron | 25.0% |
| !!! | CAATCCTTTCATTTAGTTTT+TGG | + | tig0016206:1529-1548 | Msa1357800:intergenic | 25.0% |
| !!! | TTGGTTTTACTTTTAGAGTA+GGG | + | tig0016206:1602-1621 | Msa1357800:intergenic | 25.0% |
| ! | ATATAGTGAATGCTTAAGTT+GGG | + | tig0016206:1639-1658 | Msa1357800:intergenic | 25.0% |
| ! | AATATAGTGAATGCTTAAGT+TGG | + | tig0016206:1640-1659 | Msa1357800:intergenic | 25.0% |
| ! | TATATAGATAACATGAGTGT+AGG | - | tig0016206:2117-2136 | Msa1357800:intron | 25.0% |
| ! | TCTCATAATTATGTGAAACA+TGG | + | tig0016206:2315-2334 | Msa1357800:intergenic | 25.0% |
| ! | ATAATTATGAGAGTGAAGAA+TGG | - | tig0016206:2323-2342 | Msa1357800:intron | 25.0% |
| ! | CTTAGATTGAAGACAATAAA+TGG | - | tig0016206:2503-2522 | Msa1357800:intron | 25.0% |
| ! | TAGATTGAAGACAATAAATG+GGG | - | tig0016206:2505-2524 | Msa1357800:intron | 25.0% |
| !! | GGTATGTTTAATATTTTCCT+TGG | - | tig0016206:2874-2893 | Msa1357800:CDS | 25.0% |
| ! | AGTATTACATATGAGATAAG+TGG | + | tig0016206:2949-2968 | Msa1357800:intergenic | 25.0% |
| !!! | ATACTCCTAATTTGTTGATT+AGG | - | tig0016206:2964-2983 | Msa1357800:CDS | 25.0% |
| ! | ATGTTATCTGGAAAGTTAAA+AGG | - | tig0016206:3007-3026 | Msa1357800:five_prime_UTR | 25.0% |
| !!! | GTTAAAAGGTATCAAAAAGA+AGG | - | tig0016206:3021-3040 | Msa1357800:five_prime_UTR | 25.0% |
| !!! | TTTTTTTTCTTGTGGTGTAG+TGG | + | tig0016206:227-246 | Msa0135780:intergenic | 30.0% |
| !!! | CTTGGTCATTTTTTTTCTTG+TGG | + | tig0016206:235-254 | Msa0135780:intergenic | 30.0% |
| ! | GTAGCTTTTGGATTTGTAAA+TGG | - | tig0016206:285-304 | Msa1357800:intron | 30.0% |
| ! | TCTTTAAAAGTCACCAATTG+GGG | - | tig0016206:360-379 | Msa1357800:intron | 30.0% |
| CTTGTTCTTCCTGATAAAAA+TGG | - | tig0016206:399-418 | Msa1357800:CDS | 30.0% | |
| !! | TTGGTCATACCATTTTTATC+AGG | + | tig0016206:411-430 | Msa1357800:intergenic | 30.0% |
| CATAAATGAAGCAACATTTG+AGG | + | tig0016206:458-477 | Msa1357800:intergenic | 30.0% | |
| AAATTGGCTGATATTGTTCT+TGG | - | tig0016206:524-543 | Msa1357800:intron | 30.0% | |
| TCTTGGATATGACTCAATTA+AGG | - | tig0016206:541-560 | Msa1357800:intron | 30.0% | |
| ATTCATCTATGCAAGAACAT+GGG | + | tig0016206:606-625 | Msa1357800:intergenic | 30.0% | |
| AATTCATCTATGCAAGAACA+TGG | + | tig0016206:607-626 | Msa1357800:intergenic | 30.0% | |
| TGAAATATCCACCTAATACT+TGG | - | tig0016206:1044-1063 | Msa1357800:intron | 30.0% | |
| GTTTACATTTGCCAAGTATT+AGG | + | tig0016206:1058-1077 | Msa1357800:intergenic | 30.0% | |
| !!! | GTTGGTTTTACTTTTAGAGT+AGG | + | tig0016206:1603-1622 | Msa1357800:intergenic | 30.0% |
| AAAAGGGATATACTATACCA+AGG | + | tig0016206:1860-1879 | Msa1357800:intergenic | 30.0% | |
| !! | TTCTTTTTGTTGTCTATGGT+TGG | - | tig0016206:2034-2053 | Msa1357800:intron | 30.0% |
| !! | AGAAACTTTTGCTTTTAGCT+AGG | - | tig0016206:2349-2368 | Msa1357800:intron | 30.0% |
| ATTGCATATGTTTCGTATCA+CGG | + | tig0016206:2605-2624 | Msa1357800:intergenic | 30.0% | |
| CAGAATGATTCAACATACTT+TGG | - | tig0016206:2748-2767 | Msa1357800:intron | 30.0% | |
| GGAGCTCAATTTAATCTAAA+TGG | - | tig0016206:2805-2824 | Msa1357800:intron | 30.0% | |
| ! | TACAGATTAGTTGCTAATGA+AGG | - | tig0016206:2835-2854 | Msa1357800:CDS | 30.0% |
| ATTACATATGAGATAAGTGG+TGG | + | tig0016206:2946-2965 | Msa1357800:intergenic | 30.0% | |
| ATCCACCTAATCAACAAATT+AGG | + | tig0016206:2972-2991 | Msa1357800:intergenic | 30.0% | |
| ATCAAAACTATGGTAAGTGA+AGG | + | tig0016206:3064-3083 | Msa1357800:intergenic | 30.0% | |
| !!! | TTCACTTACCATAGTTTTGA+TGG | - | tig0016206:3063-3082 | Msa1357800:five_prime_UTR | 30.0% |
| ! | TAGAAGAAGCACAAAGATCT+TGG | + | tig0016206:253-272 | Msa0135780:intergenic | 35.0% |
| ! | TGTCTACTCATAGTAGCTTT+TGG | - | tig0016206:273-292 | Msa1357800:intron | 35.0% |
| GGAATATTTGAGCTGAAGAA+AGG | - | tig0016206:330-349 | Msa1357800:intron | 35.0% | |
| ATATTTGAGCTGAAGAAAGG+AGG | - | tig0016206:333-352 | Msa1357800:intron | 35.0% | |
| TTGGTATTCTATGAGTCTTG+AGG | + | tig0016206:784-803 | Msa1357800:intergenic | 35.0% | |
| TACATTTGCCAAGTATTAGG+TGG | + | tig0016206:1055-1074 | Msa1357800:intergenic | 35.0% | |
| !!! | AATGTGGACCCTTTTTTCAA+TGG | + | tig0016206:1365-1384 | Msa1357800:intergenic | 35.0% |
| TTGAAAAAAGGGTCCACATT+AGG | - | tig0016206:1365-1384 | Msa1357800:intron | 35.0% | |
| TTTCAAACCAGATCCTAATG+TGG | + | tig0016206:1381-1400 | Msa1357800:intergenic | 35.0% | |
| !!! | TACTTTTAGAGTAGGGAGTT+TGG | + | tig0016206:1595-1614 | Msa1357800:intergenic | 35.0% |
| TTGGGATATTGTCATATCGT+TGG | + | tig0016206:1621-1640 | Msa1357800:intergenic | 35.0% | |
| !! | ACAAGGCTATTTCTAGACAA+TGG | + | tig0016206:1832-1851 | Msa1357800:intergenic | 35.0% |
| !! | AAATAGCCTTGTGAATACCT+TGG | - | tig0016206:1840-1859 | Msa1357800:intron | 35.0% |
| ! | ACTATACCAAGGTATTCACA+AGG | + | tig0016206:1849-1868 | Msa1357800:intergenic | 35.0% |
| ! | CCTACACTCATGTTCTTTTT+AGG | + | tig0016206:2146-2165 | Msa1357800:intergenic | 35.0% |
| CCTAAAAAGAACATGAGTGT+AGG | - | tig0016206:2143-2162 | Msa1357800:intron | 35.0% | |
| ! | TCCAATTCTCTTGTATCGAT+GGG | + | tig0016206:2481-2500 | Msa1357800:intergenic | 35.0% |
| TTCCAATTCTCTTGTATCGA+TGG | + | tig0016206:2482-2501 | Msa1357800:intergenic | 35.0% | |
| GAAGGAAACAATACACTTCA+TGG | - | tig0016206:2853-2872 | Msa1357800:CDS | 35.0% | |
| ! | TAATATTTTCCTTGGGGTTG+TGG | - | tig0016206:2882-2901 | Msa1357800:CDS | 35.0% |
| AAATTATTTCCACAACCCCA+AGG | + | tig0016206:2894-2913 | Msa1357800:intergenic | 35.0% | |
| ATGAGATAAGTGGTGGTAAA+TGG | + | tig0016206:2939-2958 | Msa1357800:intergenic | 35.0% | |
| !! | CTCCTAATTTGTTGATTAGG+TGG | - | tig0016206:2967-2986 | Msa1357800:CDS | 35.0% |
| CTTGTGGTGTAGTGGTAATT+TGG | + | tig0016206:219-238 | Msa0135780:intergenic | 40.0% | |
| ATCTATGCAAGAACATGGGT+TGG | + | tig0016206:602-621 | Msa1357800:intergenic | 40.0% | |
| !! | ATTTGCTATAGCCAGAGTCT+AGG | - | tig0016206:938-957 | Msa1357800:intron | 40.0% |
| GGAGGATTTAGTACATGTGA+TGG | + | tig0016206:993-1012 | Msa1357800:intergenic | 40.0% | |
| GTCAAAGTGGAAAGAAGTAG+TGG | + | tig0016206:1439-1458 | Msa1357800:intergenic | 40.0% | |
| TGACGAATAGGAAGTCAAAG+TGG | + | tig0016206:1452-1471 | Msa1357800:intergenic | 40.0% | |
| TCATTGCAACCCAATATTCC+CGG | + | tig0016206:2215-2234 | Msa1357800:intergenic | 40.0% | |
| ACCCATCGATACAAGAGAAT+TGG | - | tig0016206:2477-2496 | Msa1357800:intron | 40.0% | |
| !! | ACATACTTTGGAGCTACTGT+TGG | - | tig0016206:2760-2779 | Msa1357800:intron | 40.0% |
| ! | TGTTGATTAGGTGGATCAAG+AGG | - | tig0016206:2976-2995 | Msa1357800:CDS | 40.0% |
| TTAGGTGGATCAAGAGGATT+CGG | - | tig0016206:2982-3001 | Msa1357800:exon | 40.0% | |
| CACAATTGATGCACCCCAAT+TGG | + | tig0016206:376-395 | Msa1357800:intergenic | 45.0% | |
| !!! | TAGGAGTACTGGACTTTTGG+AGG | + | tig0016206:1011-1030 | Msa1357800:intergenic | 45.0% |
| !!! | GTCTAGGAGTACTGGACTTT+TGG | + | tig0016206:1014-1033 | Msa1357800:intergenic | 45.0% |
| GTGGATATTTCATGCCTGTG+GGG | + | tig0016206:1036-1055 | Msa1357800:intergenic | 45.0% | |
| GGTGGATATTTCATGCCTGT+GGG | + | tig0016206:1037-1056 | Msa1357800:intergenic | 45.0% | |
| AGGTGGATATTTCATGCCTG+TGG | + | tig0016206:1038-1057 | Msa1357800:intergenic | 45.0% | |
| AAAGGGTCCACATTAGGATC+TGG | - | tig0016206:1371-1390 | Msa1357800:intron | 45.0% | |
| GACTTCCTATTCGTCATGCT+TGG | - | tig0016206:1456-1475 | Msa1357800:intron | 45.0% | |
| TCCTATTCGTCATGCTTGGT+TGG | - | tig0016206:1460-1479 | Msa1357800:intron | 45.0% | |
| ACATGAGTGTAGGTTGCAAC+TGG | - | tig0016206:2153-2172 | Msa1357800:intron | 45.0% | |
| CATGAGTGTAGGTTGCAACT+GGG | - | tig0016206:2154-2173 | Msa1357800:intron | 45.0% | |
| ATTGCAACCCAATATTCCCG+GGG | + | tig0016206:2213-2232 | Msa1357800:intergenic | 45.0% | |
| CATTGCAACCCAATATTCCC+GGG | + | tig0016206:2214-2233 | Msa1357800:intergenic | 45.0% | |
| !! | ACTTTGGAGCTACTGTTGGA+CGG | - | tig0016206:2764-2783 | Msa1357800:intron | 45.0% |
| TTGAGCTCCTCCTATTCTGT+TGG | + | tig0016206:2794-2813 | Msa1357800:intergenic | 45.0% | |
| !! | GAGGATTCGGTGATGTTATC+TGG | - | tig0016206:2995-3014 | Msa1357800:exon | 45.0% |
| TGGTAAGTGAAGGTAACGCT+GGG | + | tig0016206:3054-3073 | Msa1357800:intergenic | 45.0% | |
| ATGGTAAGTGAAGGTAACGC+TGG | + | tig0016206:3055-3074 | Msa1357800:intergenic | 45.0% | |
| !!! | AAAAAAATTAATTTTTTCAA+TGG | + | tig0016206:1278-1297 | Msa1357800:intergenic | 5.0% |
| !!! | AAAAATATTAACTATTTTTT+AGG | + | tig0016206:1700-1719 | Msa1357800:intergenic | 5.0% |
| !!! | AATTAAATTTCAATTTTTTT+TGG | + | tig0016206:1940-1959 | Msa1357800:intergenic | 5.0% |
| !!! | AAAAAAAAAACTATTATTTT+CGG | - | tig0016206:2551-2570 | Msa1357800:intron | 5.0% |
| !!! | AATTAATTTTACAAATATAT+AGG | - | tig0016206:2686-2705 | Msa1357800:CDS | 5.0% |
| ATAGCCAGAGTCTAGGAGCA+TGG | - | tig0016206:945-964 | Msa1357800:intron | 50.0% | |
| CAAACCATGCTCCTAGACTC+TGG | + | tig0016206:952-971 | Msa1357800:intergenic | 50.0% | |
| !! | GGAGCATGGTTTGTTGCTTG+TGG | - | tig0016206:959-978 | Msa1357800:intron | 50.0% |
| ATTTCATGCCTGTGGGGTCT+AGG | + | tig0016206:1030-1049 | Msa1357800:intergenic | 50.0% | |
| GCCAACCAAGCATGACGAAT+AGG | + | tig0016206:1464-1483 | Msa1357800:intergenic | 50.0% | |
| ! | GATCGCACTCATGTTTCTGC+AGG | + | tig0016206:2191-2210 | Msa1357800:intergenic | 50.0% |
| AGAAACATGAGTGCGATCCC+CGG | - | tig0016206:2193-2212 | Msa1357800:intron | 50.0% | |
| !! | CTTTGGAGCTACTGTTGGAC+GGG | - | tig0016206:2765-2784 | Msa1357800:intron | 50.0% |
| GAAACATGAGTGCGATCCCC+GGG | - | tig0016206:2194-2213 | Msa1357800:intron | 55.0% | |
| AGTGCGATCCCCGGGAATAT+TGG | - | tig0016206:2202-2221 | Msa1357800:intron | 55.0% | |
| GTGCGATCCCCGGGAATATT+GGG | - | tig0016206:2203-2222 | Msa1357800:intron | 55.0% | |
| !! | GGACGGGTTGCCAACAGAAT+AGG | - | tig0016206:2781-2800 | Msa1357800:intron | 55.0% |
| CGGGTTGCCAACAGAATAGG+AGG | - | tig0016206:2784-2803 | Msa1357800:intron | 55.0% | |
| GTGAAGGTAACGCTGGGACT+AGG | + | tig0016206:3048-3067 | Msa1357800:intergenic | 55.0% | |
| ! | CCTGTGGGGTCTAGGAGTAC+TGG | + | tig0016206:1022-1041 | Msa1357800:intergenic | 60.0% |
| CCAGTACTCCTAGACCCCAC+AGG | - | tig0016206:1019-1038 | Msa1357800:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016206 | gene | 153 | 3092 | 153 | ID=Msa1357800;Name=Msa1357800 |
| tig0016206 | mRNA | 153 | 3092 | 153 | ID=Msa1357800-mRNA-1;Parent=Msa1357800;Name=Msa1357800-mRNA-1;_AED=0.00;_eAED=0.00;_QI=93|1|0.75|1|1|1|4|0|152 |
| tig0016206 | exon | 153 | 259 | 153 | ID=Msa1357800-mRNA-1:exon:10515;Parent=Msa1357800-mRNA-1 |
| tig0016206 | exon | 371 | 494 | 371 | ID=Msa1357800-mRNA-1:exon:10514;Parent=Msa1357800-mRNA-1 |
| tig0016206 | exon | 2674 | 2723 | 2674 | ID=Msa1357800-mRNA-1:exon:10513;Parent=Msa1357800-mRNA-1 |
| tig0016206 | exon | 2825 | 3092 | 2825 | ID=Msa1357800-mRNA-1:exon:10512;Parent=Msa1357800-mRNA-1 |
| tig0016206 | five_prime_UTR | 3000 | 3092 | 3000 | ID=Msa1357800-mRNA-1:five_prime_utr;Parent=Msa1357800-mRNA-1 |
| tig0016206 | CDS | 2825 | 2999 | 2825 | ID=Msa1357800-mRNA-1:cds;Parent=Msa1357800-mRNA-1 |
| tig0016206 | CDS | 2674 | 2723 | 2674 | ID=Msa1357800-mRNA-1:cds;Parent=Msa1357800-mRNA-1 |
| tig0016206 | CDS | 371 | 494 | 371 | ID=Msa1357800-mRNA-1:cds;Parent=Msa1357800-mRNA-1 |
| tig0016206 | CDS | 153 | 259 | 153 | ID=Msa1357800-mRNA-1:cds;Parent=Msa1357800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
