AlfalfaGEDB | Msa0398380

M. sativa cultivar zhongmu-4 / Msa0398380

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398380	XP_013458900.3	92.010	413	21	2	11	423	258	658	0.0	743

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398380	sp\|Q9SY89\|Y1661_ARATH	49.644	421	187	3	14	423	436	842	1.71e-133	406

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398380	A0A396ILL7	92.010	413	21	2	11	423	258	658	0.0	743

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006070	Msa0398380	0.810056	1.393721e-50	-8.615850e-47
Msa0007280	Msa0398380	0.801262	9.780768e-49	-8.615850e-47
Msa0014710	Msa0398380	0.809887	1.515556e-50	-8.615850e-47
Msa0028660	Msa0398380	0.800245	1.577701e-48	-8.615850e-47
Msa0039330	Msa0398380	0.801006	1.103609e-48	-8.615850e-47
Msa0048100	Msa0398380	0.801269	9.749236e-49	-8.615850e-47
Msa0054260	Msa0398380	0.836361	9.788737e-57	-8.615850e-47
Msa0054310	Msa0398380	0.800729	1.257309e-48	-8.615850e-47
Msa0055690	Msa0398380	0.810674	1.025182e-50	-8.615850e-47
Msa0055730	Msa0398380	0.825128	5.550632e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398380	MtrunA17_Chr3g0081011	92.010	413	21	2	11	423	258	658	0.0	743
Msa0398380	MtrunA17_Chr3g0082941	84.161	423	46	3	1	423	82	483	0.0	715
Msa0398380	MtrunA17_Chr3g0081001	85.337	416	49	2	8	423	259	662	0.0	707
Msa0398380	MtrunA17_Chr8g0354441	68.281	413	119	2	11	423	269	669	0.0	566
Msa0398380	MtrunA17_Chr8g0354281	66.828	413	116	4	11	423	262	653	0.0	554
Msa0398380	MtrunA17_Chr8g0354421	66.344	413	127	2	11	423	282	682	0.0	553
Msa0398380	MtrunA17_Chr8g0354351	66.828	413	119	3	11	423	258	652	0.0	544
Msa0398380	MtrunA17_Chr8g0354331	61.860	430	115	3	32	423	1	419	0.0	535
Msa0398380	MtrunA17_Chr8g0354431	66.234	385	119	1	39	423	288	661	1.14e-180	519
Msa0398380	MtrunA17_Chr8g0354271	65.947	417	116	4	8	423	264	655	1.01e-178	513

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398380	AT1G11330.1	49.386	407	190	2	22	423	445	840	8.96e-135	407
Msa0398380	AT1G61610.1	49.644	421	187	3	14	423	436	842	1.74e-134	406
Msa0398380	AT1G65790.1	50.229	436	187	6	7	423	419	843	1.50e-133	404
Msa0398380	AT1G11330.2	49.635	411	185	4	22	423	445	842	1.72e-133	404
Msa0398380	AT4G21390.1	48.961	433	189	5	11	423	429	849	2.92e-133	404
Msa0398380	AT1G65800.1	49.433	441	189	6	3	423	421	847	3.27e-132	400
Msa0398380	AT4G23180.1	53.782	357	149	3	71	423	325	669	1.73e-131	394
Msa0398380	AT1G11340.1	50.948	422	189	5	7	423	425	833	3.18e-131	398
Msa0398380	AT1G61370.2	49.048	420	192	5	4	423	266	663	2.85e-130	390
Msa0398380	AT1G11410.2	50.000	426	182	6	14	423	320	730	1.49e-129	390

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Find 64 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTGTCTACAACATC+TGG	0.443216	3_2:+19811326	Msa0398380:CDS
AAACTAGGAGAAGGTGGATT+TGG	0.396686	3_2:+19810865	Msa0398380:CDS
AAATGCAGGATGTTTAGGAT+TGG	0.509561	3_2:-19813045	None:intergenic
AAATTAAAGGGATTATTGGT+AGG	0.560630	3_2:-19810804	None:intergenic
AACAACCCAAAAGTCTCACA+AGG	0.681777	3_2:-19811409	None:intergenic
AACATCTGGTCAAGGTTTAG+AGG	0.384516	3_2:+19811340	Msa0398380:CDS
AACCCTTCCATAGCGTATTC+TGG	0.303961	3_2:-19812594	None:intergenic
AATGACAATAGTGATGATCA+AGG	0.587579	3_2:-19810232	None:intergenic
ACAACAACATTGGACATGGC+TGG	0.551164	3_2:-19812993	None:intergenic
ACAATTCCTATATCTCATCA+TGG	0.583776	3_2:+19810748	Msa0398380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGACAATAGTGATGATCA+AGG	-	chr3_2:19810235-19810254	None:intergenic	30.0%
ACGGAAAAATATATATGTCG+TGG	+	chr3_2:19810560-19810579	Msa0398380:intron	30.0%
ACAATTCCTATATCTCATCA+TGG	+	chr3_2:19810748-19810767	Msa0398380:CDS	30.0%
TCTGTCGAATCCAAATTAAA+GGG	-	chr3_2:19810819-19810838	None:intergenic	30.0%
GAATTATGTAAACTAGGAGA+AGG	+	chr3_2:19810856-19810875	Msa0398380:CDS	30.0%
GTAAAACATACCTTGTAAAC+AGG	-	chr3_2:19810892-19810911	None:intergenic	30.0%
TTTCAGGGTAATTTAGTAGA+TGG	+	chr3_2:19811287-19811306	Msa0398380:intron	30.0%
TACCAAATAGATGAAAGTTG+AGG	-	chr3_2:19811487-19811506	None:intergenic	30.0%
AAAGTTAGTACAGATTAGCA+AGG	+	chr3_2:19811574-19811593	Msa0398380:intron	30.0%
AGAAGCCATAAAAAGAACTT+AGG	-	chr3_2:19811738-19811757	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	19810171	19813166	19810171	ID=Msa0398380;Name=Msa0398380
chr3_2	mRNA	19810171	19813166	19810171	ID=Msa0398380-mRNA-1;Parent=Msa0398380;Name=Msa0398380-mRNA-1;_AED=0.41;_eAED=0.43;_QI=0\|0.4\|0.16\|1\|1\|1\|6\|0\|423
chr3_2	exon	19810171	19810327	19810171	ID=Msa0398380-mRNA-1:exon:4300;Parent=Msa0398380-mRNA-1
chr3_2	exon	19810728	19810900	19810728	ID=Msa0398380-mRNA-1:exon:4301;Parent=Msa0398380-mRNA-1
chr3_2	exon	19811293	19811503	19811293	ID=Msa0398380-mRNA-1:exon:4302;Parent=Msa0398380-mRNA-1
chr3_2	exon	19812230	19812467	19812230	ID=Msa0398380-mRNA-1:exon:4303;Parent=Msa0398380-mRNA-1
chr3_2	exon	19812581	19812764	19812581	ID=Msa0398380-mRNA-1:exon:4304;Parent=Msa0398380-mRNA-1
chr3_2	exon	19812858	19813166	19812858	ID=Msa0398380-mRNA-1:exon:4305;Parent=Msa0398380-mRNA-1
chr3_2	CDS	19810171	19810327	19810171	ID=Msa0398380-mRNA-1:cds;Parent=Msa0398380-mRNA-1
chr3_2	CDS	19810728	19810900	19810728	ID=Msa0398380-mRNA-1:cds;Parent=Msa0398380-mRNA-1
chr3_2	CDS	19811293	19811503	19811293	ID=Msa0398380-mRNA-1:cds;Parent=Msa0398380-mRNA-1
chr3_2	CDS	19812230	19812467	19812230	ID=Msa0398380-mRNA-1:cds;Parent=Msa0398380-mRNA-1
chr3_2	CDS	19812581	19812764	19812581	ID=Msa0398380-mRNA-1:cds;Parent=Msa0398380-mRNA-1
chr3_2	CDS	19812858	19813166	19812858	ID=Msa0398380-mRNA-1:cds;Parent=Msa0398380-mRNA-1

Gene Sequence

>Msa0398380

ATGTTCATCTTTGCTATTATTGCACTTACAGCCGAGGAAGGAGGTTCAAGTAAATCAAAGACCTTGATCATCACTATTGTCATTGTGTTGGTGGTGGTACTTGCTCTCATAAGTTGCTGTATCTTCTTCATATGGAGGCGGAATCACTCAAATAAAGATGGACTACGACAATCAGAGACAATTCCTATATCTCATCATGGCCATACTCAAGGAGAGGATTCATATAATGCTGACCTACCAATAATCCCTTTAATTTGGATTCGACAGAGCACTAATAACTTTTCAGAATTATGTAAACTAGGAGAAGGTGGATTTGGTCCTGTTTACAAGGGTAATTTAGTAGATGGAACAGAAGTTGCAATCAAAAGGCTGTCTACAACATCTGGTCAAGGTTTAGAGGAGTTCACAAATGAAGTAATCTTTATAGCTAAGTTGCAACATAGAAACCTTGTGAGACTTTTGGGTTGTTGCATTGAAGATAATGAAAAGTTGCTTGTATATGAATACATGCCAAACTCTAGCCTCAACTTTCATCTATTTGATGAAGAAAAAAGAAAACTTCTAGATTGGAAGTTAAGATTGAACATTATCAATGGAATTGCAAAAGGACTCTTGTATCTTCATGAAGACTCTAGACTAAGAGTAATCCATAGAGACCTAAAAGCAAGTAATGTTCTTTTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGGTCAAAGTCAAGAAAACACAAGAAGAGTTGTGGGCACATATGGTTACATGGCTCCAGAATACGCTATGGAAGGGTTATATTCAGGGAAATCAGATGTTTTCAGCTATGGAGTTCTTTTATTAGAAATAATTTGTGGAAAAAAGAACGGTGGATTCTATCTCGAAGAACATGGTCAAAGTCTTCTTATATATGTGAGTTTTCCTCCTTTCATATTAGTAAAAGAAAGTTGGAATCTTTGGTGTGAAGGAAAAAGTTTGGAACTGTTAGATCCAATACTGAAAAATACATACATAAGCAATGAAGTTATGAAATGCATACACATTGGTTTGTTATGTGTACAAGAAGATGCAGTGGATAGACCAGCCATGTCCAATGTTGTTGTCATGCTAGCAAGTGACACAATGGCACTTTCCAATCCTAAACATCCTGCATTTTCAGTTGGAAGAAAAGTAACTGATGATCAATCCACATCTAAAGCTTCCAAAGATCCTTCTGTTAATGAAGTTACAATATCAAATATTTTTCCTAGGTAG

Protein sequence

>Msa0398380

MFIFAIIALTAEEGGSSKSKTLIITIVIVLVVVLALISCCIFFIWRRNHSNKDGLRQSETIPISHHGHTQGEDSYNADLPIIPLIWIRQSTNNFSELCKLGEGGFGPVYKGNLVDGTEVAIKRLSTTSGQGLEEFTNEVIFIAKLQHRNLVRLLGCCIEDNEKLLVYEYMPNSSLNFHLFDEEKRKLLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARAFEKGQSQENTRRVVGTYGYMAPEYAMEGLYSGKSDVFSYGVLLLEIICGKKNGGFYLEEHGQSLLIYVSFPPFILVKESWNLWCEGKSLELLDPILKNTYISNEVMKCIHIGLLCVQEDAVDRPAMSNVVVMLASDTMALSNPKHPAFSVGRKVTDDQSTSKASKDPSVNEVTISNIFPR*