AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0944870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944870 MtrunA17_Chr6g0461681 92.823 209 10 1 1 204 1 209 3.67e-135 379
Msa0944870 MtrunA17_Chr7g0252841 67.010 194 64 0 1 194 2 195 1.66e-82 246
Msa0944870 MtrunA17_Chr4g0024851 51.309 191 87 2 5 194 4 189 2.43e-51 166
Msa0944870 MtrunA17_Chr7g0255121 30.808 198 101 7 9 194 10 183 2.63e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944870 AT3G04090.1 54.124 194 81 3 1 194 1 186 2.52e-59 187
Msa0944870 AT5G18290.2 51.309 191 87 2 5 194 4 189 3.83e-54 174
Msa0944870 AT5G18290.1 51.309 191 87 2 5 194 4 189 3.83e-54 174
Msa0944870 AT3G56950.1 29.730 185 116 4 11 194 10 181 6.47e-15 71.6
Msa0944870 AT3G56950.2 29.730 185 116 4 11 194 10 181 6.79e-15 72.0

Find 44 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGATTGACTTAAAATTT+AGG 0.143307 6_3:+21907057 None:intergenic
CCAATCATGTGACTATATTT+TGG 0.205285 6_3:+21905620 None:intergenic
TTCTGATACTCTTGTCTCTA+TGG 0.239383 6_3:-21906590 Msa0944870:CDS
CCTCATGTGTTTCAGTATAC+TGG 0.250711 6_3:-21905346 Msa0944870:CDS
ATAGATTGACTTAAAATTTA+GGG 0.265020 6_3:+21907058 None:intergenic
TACTGCCATTGGTAATGCTT+TGG 0.277983 6_3:-21906668 Msa0944870:CDS
CTTAAAATTTAGGGAAGTTC+CGG 0.284367 6_3:+21907067 None:intergenic
GGCTGGTGCTAAGGCAATTA+AGG 0.306023 6_3:-21905654 Msa0944870:CDS
TCTTTCTATGCTGCTGGTCT+TGG 0.318211 6_3:-21906613 Msa0944870:CDS
AATGTTGTAATTATAATAAA+TGG 0.340508 6_3:+21906718 None:intergenic
CTTCAATTTGTGACATATAA+TGG 0.348271 6_3:-21906751 Msa0944870:CDS
TTGAAGGTTGATTTGCATAC+TGG 0.359493 6_3:-21905587 Msa0944870:CDS
GGCTATTCGTTTCCCTGCTC+AGG 0.361454 6_3:-21906569 Msa0944870:intron
ACTGCCATTGGTAATGCTTT+GGG 0.373544 6_3:-21906667 Msa0944870:CDS
ATGAATCTGAACACATATTC+CGG 0.415559 6_3:-21907086 Msa0944870:five_prime_UTR
AGTTATGTTACACAGGCATT+AGG 0.415587 6_3:-21905683 Msa0944870:intron
GATTGGAGGACCTGCTTTGA+AGG 0.430772 6_3:-21905603 Msa0944870:CDS
GAATATGTGTTCAGATTCAT+AGG 0.438552 6_3:+21907089 None:intergenic
GATAGATATGAAAAGTATAT+AGG 0.441539 6_3:+21907002 None:intergenic
AATCCAATAAAAGCAGCAAT+AGG 0.442288 6_3:-21906856 Msa0944870:CDS
CCAAAATATAGTCACATGAT+TGG 0.450400 6_3:-21905620 Msa0944870:CDS
AATGCTTCTTTCTATGCTGC+TGG 0.462327 6_3:-21906619 Msa0944870:CDS
ACTAGGATAGGATTCATTGA+TGG 0.482882 6_3:+21905416 None:intergenic
GATAGGATTCATTGATGGTC+CGG 0.492962 6_3:+21905421 None:intergenic
AGAAAGAAGCATTTCCTGTA+GGG 0.496577 6_3:+21906629 None:intergenic
AGGTGCAGTGGCTGGTGCTA+AGG 0.499134 6_3:-21905663 Msa0944870:CDS
AATGAATCACTTACTAGGAT+AGG 0.501347 6_3:+21905404 None:intergenic
ATGTTTATATCTTCAACACT+TGG 0.520569 6_3:-21906808 Msa0944870:CDS
GGTGCAAGTTTCAACCCTAC+AGG 0.540289 6_3:-21906643 Msa0944870:CDS
TGCAAATCAACCTTCAAAGC+AGG 0.540861 6_3:+21905593 None:intergenic
TAGAAAGAAGCATTTCCTGT+AGG 0.555948 6_3:+21906628 None:intergenic
AATCATAGCTACGGTCGACA+CGG 0.578906 6_3:+21905463 None:intergenic
CAGGCATTAGGTGCAGTGGC+TGG 0.583997 6_3:-21905671 Msa0944870:CDS
CATACTGGAGCTATTGCAGA+AGG 0.585895 6_3:-21905572 Msa0944870:CDS
GTTCTCTTCATCTTGCTCAG+AGG 0.586421 6_3:-21905521 Msa0944870:CDS
AAATATAGTCACATGATTGG+AGG 0.596252 6_3:-21905617 Msa0944870:CDS
GCCATTGGTAATGCTTTGGG+TGG 0.600500 6_3:-21906664 Msa0944870:CDS
TACACAGGCATTAGGTGCAG+TGG 0.609819 6_3:-21905675 Msa0944870:intron
ACCGATGAGAATCATAGCTA+CGG 0.619659 6_3:+21905454 None:intergenic
ACCGTAGCTATGATTCTCAT+CGG 0.620550 6_3:-21905455 Msa0944870:CDS
CTCATCGGTTCTGCTTACAC+CGG 0.636201 6_3:-21905440 Msa0944870:CDS
CCAGTATACTGAAACACATG+AGG 0.664351 6_3:+21905346 None:intergenic
ACCACCCAAAGCATTACCAA+TGG 0.682828 6_3:+21906663 None:intergenic
GTCTTCATGAACTCACTACG+AGG 0.738023 6_3:+21905497 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTTGTAATTATAATAAA+TGG + chr6_3:21905701-21905720 None:intergenic 10.0%
!!! GTCTTTTTATTTTTTATTTT+TGG - chr6_3:21905890-21905909 Msa0944870:intron 10.0%
!!! TATTTTTTATTTTTGGATTT+TGG - chr6_3:21905897-21905916 Msa0944870:intron 10.0%
!!! AAGTAATATATTTTCTATAA+GGG + chr6_3:21906454-21906473 None:intergenic 10.0%
!! AATGTTGTAATTATAATAAA+TGG + chr6_3:21905701-21905720 None:intergenic 10.0%
!!! GTCTTTTTATTTTTTATTTT+TGG - chr6_3:21905890-21905909 Msa0944870:intron 10.0%
!!! TATTTTTTATTTTTGGATTT+TGG - chr6_3:21905897-21905916 Msa0944870:intron 10.0%
!!! AAGTAATATATTTTCTATAA+GGG + chr6_3:21906454-21906473 None:intergenic 10.0%
!!! ATAGATTGACTTAAAATTTA+GGG + chr6_3:21905361-21905380 None:intergenic 15.0%
!!! AGGTTTTTATTTATTTCAAA+AGG - chr6_3:21905867-21905886 Msa0944870:intron 15.0%
!!! GGTTTTTATTTATTTCAAAA+GGG - chr6_3:21905868-21905887 Msa0944870:intron 15.0%
!!! ATTTTAGATGATTTATGTTA+AGG - chr6_3:21905926-21905945 Msa0944870:intron 15.0%
!!! CAAGTAATATATTTTCTATA+AGG + chr6_3:21906455-21906474 None:intergenic 15.0%
!! CTTATAGAAAATATATTACT+TGG - chr6_3:21906453-21906472 Msa0944870:intron 15.0%
!!! ATAGATTGACTTAAAATTTA+GGG + chr6_3:21905361-21905380 None:intergenic 15.0%
!!! AGGTTTTTATTTATTTCAAA+AGG - chr6_3:21905867-21905886 Msa0944870:intron 15.0%
!!! GGTTTTTATTTATTTCAAAA+GGG - chr6_3:21905868-21905887 Msa0944870:intron 15.0%
!!! ATTTTAGATGATTTATGTTA+AGG - chr6_3:21905926-21905945 Msa0944870:intron 15.0%
!!! CAAGTAATATATTTTCTATA+AGG + chr6_3:21906455-21906474 None:intergenic 15.0%
!! CTTATAGAAAATATATTACT+TGG - chr6_3:21906453-21906472 Msa0944870:intron 15.0%
!!! GATAGATTGACTTAAAATTT+AGG + chr6_3:21905362-21905381 None:intergenic 20.0%
!!! GATAGATATGAAAAGTATAT+AGG + chr6_3:21905417-21905436 None:intergenic 20.0%
!!! GTTTGTGAATTTTTTTACTA+TGG + chr6_3:21905476-21905495 None:intergenic 20.0%
!! AGATAGAAGAGAAAAAAAAA+TGG - chr6_3:21905535-21905554 Msa0944870:CDS 20.0%
!!! GTCAAAATTATTACTTTTGT+CGG - chr6_3:21906382-21906401 Msa0944870:intron 20.0%
!!! GATAGATTGACTTAAAATTT+AGG + chr6_3:21905362-21905381 None:intergenic 20.0%
!!! GATAGATATGAAAAGTATAT+AGG + chr6_3:21905417-21905436 None:intergenic 20.0%
!!! GTTTGTGAATTTTTTTACTA+TGG + chr6_3:21905476-21905495 None:intergenic 20.0%
!! AGATAGAAGAGAAAAAAAAA+TGG - chr6_3:21905535-21905554 Msa0944870:CDS 20.0%
!!! GTCAAAATTATTACTTTTGT+CGG - chr6_3:21906382-21906401 Msa0944870:intron 20.0%
!!! ATTTTGTGTTGACTTTTACA+TGG - chr6_3:21905585-21905604 Msa0944870:CDS 25.0%
! ATGTTTATATCTTCAACACT+TGG - chr6_3:21905608-21905627 Msa0944870:CDS 25.0%
! CTTCAATTTGTGACATATAA+TGG - chr6_3:21905665-21905684 Msa0944870:CDS 25.0%
! AATAAATAAAAACCTGAGCA+GGG + chr6_3:21905862-21905881 None:intergenic 25.0%
! AAATAAATAAAAACCTGAGC+AGG + chr6_3:21905863-21905882 None:intergenic 25.0%
! ATTATTACTACTGTTGTATC+CGG - chr6_3:21906034-21906053 Msa0944870:intron 25.0%
!! TGTAGTTTTTGTCAAAATCA+CGG - chr6_3:21906147-21906166 Msa0944870:intron 25.0%
! TATAACATTAAGTGCATGTT+TGG + chr6_3:21906208-21906227 None:intergenic 25.0%
!!! ACTTAATGTTATAGCCTTAT+AGG - chr6_3:21906215-21906234 Msa0944870:intron 25.0%
! GAAAAAATGAATCACTTACT+AGG + chr6_3:21907020-21907039 None:intergenic 25.0%
! ACCAATGATAACATGAAAAA+CGG + chr6_3:21907048-21907067 None:intergenic 25.0%
!!! ATTTTGTGTTGACTTTTACA+TGG - chr6_3:21905585-21905604 Msa0944870:CDS 25.0%
! ATGTTTATATCTTCAACACT+TGG - chr6_3:21905608-21905627 Msa0944870:CDS 25.0%
! CTTCAATTTGTGACATATAA+TGG - chr6_3:21905665-21905684 Msa0944870:CDS 25.0%
! AATAAATAAAAACCTGAGCA+GGG + chr6_3:21905862-21905881 None:intergenic 25.0%
! AAATAAATAAAAACCTGAGC+AGG + chr6_3:21905863-21905882 None:intergenic 25.0%
! ATTATTACTACTGTTGTATC+CGG - chr6_3:21906034-21906053 Msa0944870:intron 25.0%
!! TGTAGTTTTTGTCAAAATCA+CGG - chr6_3:21906147-21906166 Msa0944870:intron 25.0%
! TATAACATTAAGTGCATGTT+TGG + chr6_3:21906208-21906227 None:intergenic 25.0%
!!! ACTTAATGTTATAGCCTTAT+AGG - chr6_3:21906215-21906234 Msa0944870:intron 25.0%
! GAAAAAATGAATCACTTACT+AGG + chr6_3:21907020-21907039 None:intergenic 25.0%
! ACCAATGATAACATGAAAAA+CGG + chr6_3:21907048-21907067 None:intergenic 25.0%
GAATATGTGTTCAGATTCAT+AGG + chr6_3:21905330-21905349 None:intergenic 30.0%
ATGAATCTGAACACATATTC+CGG - chr6_3:21905330-21905349 Msa0944870:exon 30.0%
CTTAAAATTTAGGGAAGTTC+CGG + chr6_3:21905352-21905371 None:intergenic 30.0%
AATCCAATAAAAGCAGCAAT+AGG - chr6_3:21905560-21905579 Msa0944870:CDS 30.0%
!! ATCTTTACTTTTACTGCCAT+TGG - chr6_3:21905737-21905756 Msa0944870:intron 30.0%
GTTTGGATTCACAATGAATT+TGG + chr6_3:21906191-21906210 None:intergenic 30.0%
TGGCTTAGTGAAATTATGTT+AGG - chr6_3:21906260-21906279 Msa0944870:intron 30.0%
!! TAATTTTGACGTGTCTGTAT+CGG + chr6_3:21906372-21906391 None:intergenic 30.0%
ATATGACAATTGTAGTTGCA+GGG - chr6_3:21906617-21906636 Msa0944870:CDS 30.0%
ATTAACGAGTTATGTTACAC+AGG - chr6_3:21906726-21906745 Msa0944870:CDS 30.0%
!! ATCATGTGACTATATTTTGG+TGG + chr6_3:21906796-21906815 None:intergenic 30.0%
! CCAATCATGTGACTATATTT+TGG + chr6_3:21906799-21906818 None:intergenic 30.0%
CCAAAATATAGTCACATGAT+TGG - chr6_3:21906796-21906815 Msa0944870:CDS 30.0%
AAATATAGTCACATGATTGG+AGG - chr6_3:21906799-21906818 Msa0944870:CDS 30.0%
AATGAATCACTTACTAGGAT+AGG + chr6_3:21907015-21907034 None:intergenic 30.0%
GAATATGTGTTCAGATTCAT+AGG + chr6_3:21905330-21905349 None:intergenic 30.0%
ATGAATCTGAACACATATTC+CGG - chr6_3:21905330-21905349 Msa0944870:exon 30.0%
CTTAAAATTTAGGGAAGTTC+CGG + chr6_3:21905352-21905371 None:intergenic 30.0%
AATCCAATAAAAGCAGCAAT+AGG - chr6_3:21905560-21905579 Msa0944870:CDS 30.0%
!! ATCTTTACTTTTACTGCCAT+TGG - chr6_3:21905737-21905756 Msa0944870:intron 30.0%
GTTTGGATTCACAATGAATT+TGG + chr6_3:21906191-21906210 None:intergenic 30.0%
TGGCTTAGTGAAATTATGTT+AGG - chr6_3:21906260-21906279 Msa0944870:intron 30.0%
!! TAATTTTGACGTGTCTGTAT+CGG + chr6_3:21906372-21906391 None:intergenic 30.0%
ATATGACAATTGTAGTTGCA+GGG - chr6_3:21906617-21906636 Msa0944870:CDS 30.0%
ATTAACGAGTTATGTTACAC+AGG - chr6_3:21906726-21906745 Msa0944870:CDS 30.0%
!! ATCATGTGACTATATTTTGG+TGG + chr6_3:21906796-21906815 None:intergenic 30.0%
! CCAATCATGTGACTATATTT+TGG + chr6_3:21906799-21906818 None:intergenic 30.0%
CCAAAATATAGTCACATGAT+TGG - chr6_3:21906796-21906815 Msa0944870:CDS 30.0%
AAATATAGTCACATGATTGG+AGG - chr6_3:21906799-21906818 Msa0944870:CDS 30.0%
AATGAATCACTTACTAGGAT+AGG + chr6_3:21907015-21907034 None:intergenic 30.0%
!!! TCTCCTATTGCTGCTTTTAT+TGG + chr6_3:21905566-21905585 None:intergenic 35.0%
!! AGAAAGAAGCATTTCCTGTA+GGG + chr6_3:21905790-21905809 None:intergenic 35.0%
!! TAGAAAGAAGCATTTCCTGT+AGG + chr6_3:21905791-21905810 None:intergenic 35.0%
TTCTGATACTCTTGTCTCTA+TGG - chr6_3:21905826-21905845 Msa0944870:intron 35.0%
TGTTAAGGTGAGTTTCGTAT+CGG - chr6_3:21905941-21905960 Msa0944870:intron 35.0%
TCGATGAAATAACGATGACA+CGG - chr6_3:21906097-21906116 Msa0944870:intron 35.0%
GGTTTGACAACATACCTATA+AGG + chr6_3:21906232-21906251 None:intergenic 35.0%
GCACATACACTTATGATTGA+AGG - chr6_3:21906334-21906353 Msa0944870:intron 35.0%
! GCAAAATTTCAGGTCAACAT+AGG + chr6_3:21906564-21906583 None:intergenic 35.0%
! CTTGATGACTGCAAAATTTC+AGG + chr6_3:21906574-21906593 None:intergenic 35.0%
CTGCAACTACAATTGTCATA+TGG + chr6_3:21906618-21906637 None:intergenic 35.0%
CATATGACAATTGTAGTTGC+AGG - chr6_3:21906616-21906635 Msa0944870:CDS 35.0%
AGTTATGTTACACAGGCATT+AGG - chr6_3:21906733-21906752 Msa0944870:CDS 35.0%
!! TTGAAGGTTGATTTGCATAC+TGG - chr6_3:21906829-21906848 Msa0944870:CDS 35.0%
ACTAGGATAGGATTCATTGA+TGG + chr6_3:21907003-21907022 None:intergenic 35.0%
!!! GCCGTTTTTCATGTTATCAT+TGG - chr6_3:21907044-21907063 Msa0944870:five_prime_UTR 35.0%
!!! TCTCCTATTGCTGCTTTTAT+TGG + chr6_3:21905566-21905585 None:intergenic 35.0%
!! AGAAAGAAGCATTTCCTGTA+GGG + chr6_3:21905790-21905809 None:intergenic 35.0%
!! TAGAAAGAAGCATTTCCTGT+AGG + chr6_3:21905791-21905810 None:intergenic 35.0%
TTCTGATACTCTTGTCTCTA+TGG - chr6_3:21905826-21905845 Msa0944870:intron 35.0%
TGTTAAGGTGAGTTTCGTAT+CGG - chr6_3:21905941-21905960 Msa0944870:intron 35.0%
TCGATGAAATAACGATGACA+CGG - chr6_3:21906097-21906116 Msa0944870:intron 35.0%
GGTTTGACAACATACCTATA+AGG + chr6_3:21906232-21906251 None:intergenic 35.0%
GCACATACACTTATGATTGA+AGG - chr6_3:21906334-21906353 Msa0944870:intron 35.0%
! GCAAAATTTCAGGTCAACAT+AGG + chr6_3:21906564-21906583 None:intergenic 35.0%
! CTTGATGACTGCAAAATTTC+AGG + chr6_3:21906574-21906593 None:intergenic 35.0%
CTGCAACTACAATTGTCATA+TGG + chr6_3:21906618-21906637 None:intergenic 35.0%
CATATGACAATTGTAGTTGC+AGG - chr6_3:21906616-21906635 Msa0944870:CDS 35.0%
AGTTATGTTACACAGGCATT+AGG - chr6_3:21906733-21906752 Msa0944870:CDS 35.0%
!! TTGAAGGTTGATTTGCATAC+TGG - chr6_3:21906829-21906848 Msa0944870:CDS 35.0%
ACTAGGATAGGATTCATTGA+TGG + chr6_3:21907003-21907022 None:intergenic 35.0%
!!! GCCGTTTTTCATGTTATCAT+TGG - chr6_3:21907044-21907063 Msa0944870:five_prime_UTR 35.0%
!! TACTGCCATTGGTAATGCTT+TGG - chr6_3:21905748-21905767 Msa0944870:intron 40.0%
!! ACTGCCATTGGTAATGCTTT+GGG - chr6_3:21905749-21905768 Msa0944870:intron 40.0%
AATGCTTCTTTCTATGCTGC+TGG - chr6_3:21905797-21905816 Msa0944870:intron 40.0%
TATGTGTTTGCATCTGACAC+CGG - chr6_3:21905965-21905984 Msa0944870:intron 40.0%
GGTATGTTGTCAAACCCAAT+AGG - chr6_3:21906236-21906255 Msa0944870:intron 40.0%
TTTCACTAAGCCAGCCTATT+GGG + chr6_3:21906253-21906272 None:intergenic 40.0%
ATTTCACTAAGCCAGCCTAT+TGG + chr6_3:21906254-21906273 None:intergenic 40.0%
! CTTATGATTGAAGGCGTGTT+CGG - chr6_3:21906343-21906362 Msa0944870:intron 40.0%
!! ATTACTTTTGTCGGCATGTC+TGG - chr6_3:21906391-21906410 Msa0944870:intron 40.0%
TCATATCCTTCTTGCTCTCT+CGG - chr6_3:21906483-21906502 Msa0944870:intron 40.0%
GAGGATACACGTAGATTTCA+TGG - chr6_3:21906529-21906548 Msa0944870:intron 40.0%
!! GCTTAACTTGTGACTTGTGT+TGG - chr6_3:21906639-21906658 Msa0944870:CDS 40.0%
TGCAAATCAACCTTCAAAGC+AGG + chr6_3:21906826-21906845 None:intergenic 40.0%
ACCGTAGCTATGATTCTCAT+CGG - chr6_3:21906961-21906980 Msa0944870:five_prime_UTR 40.0%
ACCGATGAGAATCATAGCTA+CGG + chr6_3:21906965-21906984 None:intergenic 40.0%
! GATAGGATTCATTGATGGTC+CGG + chr6_3:21906998-21907017 None:intergenic 40.0%
CCAGTATACTGAAACACATG+AGG + chr6_3:21907073-21907092 None:intergenic 40.0%
CCTCATGTGTTTCAGTATAC+TGG - chr6_3:21907070-21907089 Msa0944870:five_prime_UTR 40.0%
!! TACTGCCATTGGTAATGCTT+TGG - chr6_3:21905748-21905767 Msa0944870:intron 40.0%
!! ACTGCCATTGGTAATGCTTT+GGG - chr6_3:21905749-21905768 Msa0944870:intron 40.0%
AATGCTTCTTTCTATGCTGC+TGG - chr6_3:21905797-21905816 Msa0944870:intron 40.0%
TATGTGTTTGCATCTGACAC+CGG - chr6_3:21905965-21905984 Msa0944870:intron 40.0%
GGTATGTTGTCAAACCCAAT+AGG - chr6_3:21906236-21906255 Msa0944870:intron 40.0%
TTTCACTAAGCCAGCCTATT+GGG + chr6_3:21906253-21906272 None:intergenic 40.0%
ATTTCACTAAGCCAGCCTAT+TGG + chr6_3:21906254-21906273 None:intergenic 40.0%
! CTTATGATTGAAGGCGTGTT+CGG - chr6_3:21906343-21906362 Msa0944870:intron 40.0%
!! ATTACTTTTGTCGGCATGTC+TGG - chr6_3:21906391-21906410 Msa0944870:intron 40.0%
TCATATCCTTCTTGCTCTCT+CGG - chr6_3:21906483-21906502 Msa0944870:intron 40.0%
GAGGATACACGTAGATTTCA+TGG - chr6_3:21906529-21906548 Msa0944870:intron 40.0%
!! GCTTAACTTGTGACTTGTGT+TGG - chr6_3:21906639-21906658 Msa0944870:CDS 40.0%
TGCAAATCAACCTTCAAAGC+AGG + chr6_3:21906826-21906845 None:intergenic 40.0%
ACCGTAGCTATGATTCTCAT+CGG - chr6_3:21906961-21906980 Msa0944870:five_prime_UTR 40.0%
ACCGATGAGAATCATAGCTA+CGG + chr6_3:21906965-21906984 None:intergenic 40.0%
! GATAGGATTCATTGATGGTC+CGG + chr6_3:21906998-21907017 None:intergenic 40.0%
CCAGTATACTGAAACACATG+AGG + chr6_3:21907073-21907092 None:intergenic 40.0%
CCTCATGTGTTTCAGTATAC+TGG - chr6_3:21907070-21907089 Msa0944870:five_prime_UTR 40.0%
! ACCACCCAAAGCATTACCAA+TGG + chr6_3:21905756-21905775 None:intergenic 45.0%
! TCTTTCTATGCTGCTGGTCT+TGG - chr6_3:21905803-21905822 Msa0944870:intron 45.0%
AACTGACACGACATAGACAC+CGG + chr6_3:21906056-21906075 None:intergenic 45.0%
TGTTGTCAAACCCAATAGGC+TGG - chr6_3:21906240-21906259 Msa0944870:intron 45.0%
TCTGCAATCCAGATCGAGAT+TGG + chr6_3:21906511-21906530 None:intergenic 45.0%
AATCTCGATCTGGATTGCAG+AGG - chr6_3:21906510-21906529 Msa0944870:intron 45.0%
CATACTGGAGCTATTGCAGA+AGG - chr6_3:21906844-21906863 Msa0944870:CDS 45.0%
GTTCTCTTCATCTTGCTCAG+AGG - chr6_3:21906895-21906914 Msa0944870:five_prime_UTR 45.0%
GTCTTCATGAACTCACTACG+AGG + chr6_3:21906922-21906941 None:intergenic 45.0%
AATCATAGCTACGGTCGACA+CGG + chr6_3:21906956-21906975 None:intergenic 45.0%
! ACCACCCAAAGCATTACCAA+TGG + chr6_3:21905756-21905775 None:intergenic 45.0%
! TCTTTCTATGCTGCTGGTCT+TGG - chr6_3:21905803-21905822 Msa0944870:intron 45.0%
AACTGACACGACATAGACAC+CGG + chr6_3:21906056-21906075 None:intergenic 45.0%
TGTTGTCAAACCCAATAGGC+TGG - chr6_3:21906240-21906259 Msa0944870:intron 45.0%
TCTGCAATCCAGATCGAGAT+TGG + chr6_3:21906511-21906530 None:intergenic 45.0%
AATCTCGATCTGGATTGCAG+AGG - chr6_3:21906510-21906529 Msa0944870:intron 45.0%
CATACTGGAGCTATTGCAGA+AGG - chr6_3:21906844-21906863 Msa0944870:CDS 45.0%
GTTCTCTTCATCTTGCTCAG+AGG - chr6_3:21906895-21906914 Msa0944870:five_prime_UTR 45.0%
GTCTTCATGAACTCACTACG+AGG + chr6_3:21906922-21906941 None:intergenic 45.0%
AATCATAGCTACGGTCGACA+CGG + chr6_3:21906956-21906975 None:intergenic 45.0%
!! GCCATTGGTAATGCTTTGGG+TGG - chr6_3:21905752-21905771 Msa0944870:intron 50.0%
GGTGCAAGTTTCAACCCTAC+AGG - chr6_3:21905773-21905792 Msa0944870:intron 50.0%
CACATGTATCAGTGTCGTGC+CGG + chr6_3:21905987-21906006 None:intergenic 50.0%
TTGGAACCGAGAGAGCAAGA+AGG + chr6_3:21906492-21906511 None:intergenic 50.0%
TCTCGGTTCCAATCTCGATC+TGG - chr6_3:21906500-21906519 Msa0944870:intron 50.0%
TACACAGGCATTAGGTGCAG+TGG - chr6_3:21906741-21906760 Msa0944870:CDS 50.0%
! GGCTGGTGCTAAGGCAATTA+AGG - chr6_3:21906762-21906781 Msa0944870:CDS 50.0%
GATTGGAGGACCTGCTTTGA+AGG - chr6_3:21906813-21906832 Msa0944870:CDS 50.0%
!! CTCATCGGTTCTGCTTACAC+CGG - chr6_3:21906976-21906995 Msa0944870:five_prime_UTR 50.0%
!! GCCATTGGTAATGCTTTGGG+TGG - chr6_3:21905752-21905771 Msa0944870:intron 50.0%
GGTGCAAGTTTCAACCCTAC+AGG - chr6_3:21905773-21905792 Msa0944870:intron 50.0%
CACATGTATCAGTGTCGTGC+CGG + chr6_3:21905987-21906006 None:intergenic 50.0%
TTGGAACCGAGAGAGCAAGA+AGG + chr6_3:21906492-21906511 None:intergenic 50.0%
TCTCGGTTCCAATCTCGATC+TGG - chr6_3:21906500-21906519 Msa0944870:intron 50.0%
TACACAGGCATTAGGTGCAG+TGG - chr6_3:21906741-21906760 Msa0944870:CDS 50.0%
! GGCTGGTGCTAAGGCAATTA+AGG - chr6_3:21906762-21906781 Msa0944870:CDS 50.0%
GATTGGAGGACCTGCTTTGA+AGG - chr6_3:21906813-21906832 Msa0944870:CDS 50.0%
!! CTCATCGGTTCTGCTTACAC+CGG - chr6_3:21906976-21906995 Msa0944870:five_prime_UTR 50.0%
GGCTATTCGTTTCCCTGCTC+AGG - chr6_3:21905847-21905866 Msa0944870:intron 55.0%
GGCTATTCGTTTCCCTGCTC+AGG - chr6_3:21905847-21905866 Msa0944870:intron 55.0%
CAGGCATTAGGTGCAGTGGC+TGG - chr6_3:21906745-21906764 Msa0944870:CDS 60.0%
! AGGTGCAGTGGCTGGTGCTA+AGG - chr6_3:21906753-21906772 Msa0944870:CDS 60.0%
CAGGCATTAGGTGCAGTGGC+TGG - chr6_3:21906745-21906764 Msa0944870:CDS 60.0%
! AGGTGCAGTGGCTGGTGCTA+AGG - chr6_3:21906753-21906772 Msa0944870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 21905317 21907121 21905317 ID=Msa0944870;Name=Msa0944870
chr6_3 mRNA 21905317 21907121 21905317 ID=Msa0944870-mRNA-1;Parent=Msa0944870;Name=Msa0944870-mRNA-1;_AED=0.15;_eAED=0.15;_QI=237|1|1|1|1|1|2|20|222
chr6_3 exon 21905317 21905690 21905317 ID=Msa0944870-mRNA-1:exon:6538;Parent=Msa0944870-mRNA-1
chr6_3 exon 21906570 21907121 21906570 ID=Msa0944870-mRNA-1:exon:6537;Parent=Msa0944870-mRNA-1
chr6_3 five_prime_UTR 21906885 21907121 21906885 ID=Msa0944870-mRNA-1:five_prime_utr;Parent=Msa0944870-mRNA-1
chr6_3 CDS 21906570 21906884 21906570 ID=Msa0944870-mRNA-1:cds;Parent=Msa0944870-mRNA-1
chr6_3 CDS 21905337 21905690 21905337 ID=Msa0944870-mRNA-1:cds;Parent=Msa0944870-mRNA-1
chr6_3 three_prime_UTR 21905317 21905336 21905317 ID=Msa0944870-mRNA-1:three_prime_utr;Parent=Msa0944870-mRNA-1
Gene Sequence

>Msa0944870

ATGGTGAATCCAATAAAAGCAGCAATAGGAGATTTTGTGTTGACTTTTACATGGATGTTTATATCTTCAACACTTGGATTAGTCACAACAGAAATTATGAAAGCTTTTGATCTTCAATTTGTGACATATAATGGTGTTAATTATCCATTTATTATAATTACAACATTGCTAATATTCATAATTATCTTTACTTTTACTGCCATTGGTAATGCTTTGGGTGGTGCAAGTTTCAACCCTACAGGAAATGCTTCTTTCTATGCTGCTGGTCTTGGTTCTGATACTCTTGTCTCTATGGCTATTCGTTTCCCTGCTCAGGCATTAGGTGCAGTGGCTGGTGCTAAGGCAATTAAGGAATTAATACCACCAAAATATAGTCACATGATTGGAGGACCTGCTTTGAAGGTTGATTTGCATACTGGAGCTATTGCAGAAGGAGTGTTGACATTTTCAATCACTTTTGCTGTTCTCTTCATCTTGCTCAGAGGTCCTCGTAGTGAGTTCATGAAGACTTTGTTGATGTCCGTGTCGACCGTAGCTATGATTCTCATCGGTTCTGCTTACACCGGACCATCAATGAATCCTATCCTAGTAAGTGATTCATTTTTTCATTCGCCGTTTTTCATGTTATCATTGGTTTCCTCATGTGTTTCAGTATACTGGTTTTCGTAA

Protein sequence

>Msa0944870

MVNPIKAAIGDFVLTFTWMFISSTLGLVTTEIMKAFDLQFVTYNGVNYPFIIITTLLIFIIIFTFTAIGNALGGASFNPTGNASFYAAGLGSDTLVSMAIRFPAQALGAVAGAKAIKELIPPKYSHMIGGPALKVDLHTGAIAEGVLTFSITFAVLFILLRGPRSEFMKTLLMSVSTVAMILIGSAYTGPSMNPILVSDSFFHSPFFMLSLVSSCVSVYWFS*