AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299960 MtrunA17_Chr4g0061411 96.183 655 25 0 1 655 1 655 0.0 1316
Msa1299960 MtrunA17_Chr4g0062751 40.483 373 201 8 7 374 187 543 7.95e-80 265
Msa1299960 MtrunA17_Chr2g0321941 31.624 351 214 10 36 373 48 385 1.98e-48 174
Msa1299960 MtrunA17_Chr8g0384361 38.075 239 132 6 134 365 2 231 3.72e-45 160
Msa1299960 MtrunA17_Chr3g0146071 26.441 295 193 8 26 309 19 300 2.27e-23 104
Msa1299960 MtrunA17_Chr5g0393401 26.087 299 201 8 16 309 20 303 6.78e-23 102
Msa1299960 MtrunA17_Chr3g0117101 26.316 323 213 10 16 329 280 586 1.27e-22 103
Msa1299960 MtrunA17_Chr4g0027021 25.566 309 210 9 38 340 24 318 1.66e-21 97.8
Msa1299960 MtrunA17_Chr1g0151631 25.000 308 209 7 18 322 32 320 1.17e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299960 AT5G61060.1 63.906 640 223 6 14 651 22 655 0.0 842
Msa1299960 AT5G61060.2 63.313 646 225 7 12 651 20 659 0.0 836
Msa1299960 AT5G61070.1 66.485 367 122 1 16 381 57 423 0.0 534
Msa1299960 AT5G61050.1 56.250 224 98 0 429 652 25 248 2.39e-82 260
Msa1299960 AT3G18520.4 41.316 380 199 8 4 375 135 498 1.21e-80 265
Msa1299960 AT3G18520.2 41.316 380 199 8 4 375 135 498 2.65e-80 265
Msa1299960 AT3G18520.1 41.316 380 199 8 4 375 135 498 7.28e-80 264
Msa1299960 AT3G18520.3 42.236 322 171 5 4 322 135 444 2.18e-72 241
Msa1299960 AT1G08460.1 31.487 343 204 9 18 340 5 336 6.38e-45 165
Msa1299960 AT4G33470.1 33.129 326 194 7 34 344 76 392 1.49e-44 165
Msa1299960 AT1G08460.2 31.095 283 168 8 18 284 5 276 7.13e-35 135
Msa1299960 AT4G38130.2 27.119 295 191 8 26 309 18 299 1.23e-23 105
Msa1299960 AT4G38130.1 27.119 295 191 8 26 309 18 299 1.42e-23 105
Msa1299960 AT5G63110.1 25.000 324 216 10 15 329 17 322 5.39e-22 100
Msa1299960 AT3G44680.1 25.974 308 210 9 38 340 24 318 1.34e-21 98.6
Msa1299960 AT5G26040.2 23.599 339 230 9 18 352 73 386 4.15e-17 84.3

Find 173 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCGCATTAGGGCTATT+TGG 0.145340 8_3:-61343124 Msa1299960:CDS
TACTCACGTCATAGTAATTA+TGG 0.170645 8_3:+61337355 None:intergenic
CTCTTCCAGATGAGGTCTTT+TGG 0.224749 8_3:-61337905 Msa1299960:CDS
TACGTGAACATTTGACAATT+TGG 0.228047 8_3:+61338537 None:intergenic
TGTTCATACAGGCATGAATT+TGG 0.238070 8_3:-61341511 Msa1299960:intron
AGACTCTGCTTTATTTGATA+TGG 0.245838 8_3:-61337602 Msa1299960:CDS
TTATTCCCTTCTGTTGAAAA+AGG 0.248863 8_3:-61341147 Msa1299960:intron
GCTTGAAGACAAGCCTCTTA+TGG 0.252076 8_3:-61340786 Msa1299960:CDS
TATGTCTGGATTAAATTCTT+TGG 0.259310 8_3:+61341339 None:intergenic
GATATTGAGCTCTTCAAATC+TGG 0.264118 8_3:-61337236 Msa1299960:CDS
CTAATGCGATTGGGAGTTTC+GGG 0.279397 8_3:+61343134 None:intergenic
AACGCGACGTTGTTGATTAC+TGG 0.280085 8_3:+61343214 None:intergenic
GCATTTCAGATGTGTGCTTT+TGG 0.299955 8_3:-61342973 Msa1299960:intron
CCGAAACTCCCAATCGCATT+AGG 0.312430 8_3:-61343133 Msa1299960:CDS
CCCTTCCGCTCCGAATTTAG+AGG 0.313751 8_3:+61343375 None:intergenic
ATCCTGATGCTTCCCATTCC+TGG 0.319536 8_3:-61338564 Msa1299960:CDS
TGCTGCTGGCAGTGCTTTAG+AGG 0.323712 8_3:-61342787 Msa1299960:intron
CTTGAAGACAAGCCTCTTAT+GGG 0.324333 8_3:-61340785 Msa1299960:CDS
CAATCGCATTAGGGCTATTT+GGG 0.326947 8_3:-61343123 Msa1299960:CDS
GCCATCTCCAACAAGGAGTT+TGG 0.340575 8_3:-61337568 Msa1299960:CDS
AGGGAAACGAAAATCACTTT+TGG 0.342852 8_3:-61343352 Msa1299960:five_prime_UTR
CACGTATGGTATGCTTCTTA+TGG 0.349863 8_3:-61338520 Msa1299960:CDS
TCTGACTCCATTGTTTCGTT+TGG 0.350139 8_3:+61343260 None:intergenic
GCGAGGAGTTAAGTCCCTTT+TGG 0.357234 8_3:-61340497 Msa1299960:CDS
CCTAATGCGATTGGGAGTTT+CGG 0.361572 8_3:+61343133 None:intergenic
GTTCATACAGGCATGAATTT+GGG 0.369965 8_3:-61341510 Msa1299960:intron
TTCCCTTGTCATATATTGTT+CGG 0.374816 8_3:-61337876 Msa1299960:CDS
GAAATATATAGAATTAAGTT+TGG 0.378516 8_3:+61342839 None:intergenic
AATCTGCTGTTGCTATTGTT+AGG 0.386566 8_3:-61342050 Msa1299960:CDS
AACAGCTGTTGGAGACCCTT+TGG 0.393147 8_3:-61341195 Msa1299960:intron
GTCTTCCAAAAGACCTCATC+TGG 0.393460 8_3:+61337900 None:intergenic
ACGTTGTTGATTACTGGTTT+TGG 0.394556 8_3:+61343220 None:intergenic
CGAAACTCCCAATCGCATTA+GGG 0.395039 8_3:-61343132 Msa1299960:CDS
CAACAAGGAGTTTGGTTCTC+AGG 0.396251 8_3:-61337560 Msa1299960:CDS
GGATTAAATTCTTTGGCTAC+AGG 0.396513 8_3:+61341346 None:intergenic
CTGAGAACCAAACTCCTTGT+TGG 0.398679 8_3:+61337561 None:intergenic
GACATAATTATAGTTTCTGC+TGG 0.399848 8_3:-61341322 Msa1299960:CDS
GTCGTGAATCCTCACATTCA+TGG 0.399941 8_3:-61337854 Msa1299960:CDS
AACAAACACTCCTCTAAATT+CGG 0.407444 8_3:-61343385 Msa1299960:five_prime_UTR
GTTGCTATTGTTAGGCCTCC+AGG 0.407797 8_3:-61342042 Msa1299960:CDS
GTATTGGCGTACGATTTATT+AGG 0.424154 8_3:+61337194 None:intergenic
ATTGACATTTGGTCGGTGAC+TGG 0.426168 8_3:-61336871 Msa1299960:three_prime_UTR
TCGTGAATCCTCACATTCAT+GGG 0.433044 8_3:-61337853 Msa1299960:CDS
ACAGCTGTTGGAGACCCTTT+GGG 0.438309 8_3:-61341194 Msa1299960:intron
GATCAGTAATGCCAGTGGTT+TGG 0.438935 8_3:+61343093 None:intergenic
GTTAACCTGCATCAACTTTG+AGG 0.444344 8_3:+61339654 None:intergenic
GCAGAAACTATAATTATGTC+TGG 0.445477 8_3:+61341325 None:intergenic
CAATTTGGATCGCCAGGAAT+GGG 0.447833 8_3:+61338552 None:intergenic
AGCACTGCCAGCAGCAAGAT+AGG 0.448179 8_3:+61342794 None:intergenic
ACAAGCAAGTGTAGGCCAAA+AGG 0.448728 8_3:+61340482 None:intergenic
ATAAATGTGCCATGGGAGAA+TGG 0.449106 8_3:-61341418 Msa1299960:CDS
GGATGTTGCATCACACCATC+TGG 0.449215 8_3:-61341170 Msa1299960:CDS
TTGTCCAGTGGCACCACCTC+CGG 0.451156 8_3:-61340439 Msa1299960:intron
TACGCCAATACCTTGATAAG+AGG 0.453079 8_3:-61337182 Msa1299960:CDS
ACCTGCATCAACTTTGAGGT+TGG 0.453401 8_3:+61339658 None:intergenic
TCCTCTAAATTCGGAGCGGA+AGG 0.454614 8_3:-61343376 Msa1299960:five_prime_UTR
CAACCCTCTTATCAAGGTAT+TGG 0.455441 8_3:+61337178 None:intergenic
TCCTCACATTCATGGGGTCC+TGG 0.460322 8_3:-61337846 Msa1299960:CDS
TGCTGAAGGTAGGATTGTAC+TGG 0.463597 8_3:-61340873 Msa1299960:CDS
GCTATGTAGCAATCAAATCT+TGG 0.469211 8_3:+61338481 None:intergenic
TAAATGTGCCATGGGAGAAT+GGG 0.475376 8_3:-61341417 Msa1299960:CDS
CAAGCAAGTGTAGGCCAAAA+GGG 0.475938 8_3:+61340483 None:intergenic
GTTTCTGCTGGATTTGATGC+TGG 0.477604 8_3:-61341310 Msa1299960:intron
CTTCTTATGGCTCAAATATG+TGG 0.478164 8_3:-61338507 Msa1299960:CDS
TCAAAATTTAGAAGCAATGC+TGG 0.478691 8_3:+61336937 None:intergenic
ACTCACGTCATAGTAATTAT+GGG 0.479698 8_3:+61337356 None:intergenic
ATTTGACAATTTGGATCGCC+AGG 0.480460 8_3:+61338546 None:intergenic
TGTTATTCTTCTCCGTTCAC+AGG 0.482601 8_3:-61341725 Msa1299960:intron
CGCCAGGAATGGGAAGCATC+AGG 0.485697 8_3:+61338562 None:intergenic
CCAAATAGCCCTAATGCGAT+TGG 0.488568 8_3:+61343124 None:intergenic
TCGGGATGGCGATCGTCATC+CGG 0.492172 8_3:+61343152 None:intergenic
TCCAACCTCAAAGTTGATGC+AGG 0.492492 8_3:-61339659 Msa1299960:intron
ATATTGAGCTCTTCAAATCT+GGG 0.493087 8_3:-61337235 Msa1299960:CDS
GCCTCTGAAGACCCCATAAG+AGG 0.494622 8_3:+61340773 None:intergenic
CTCTACCAACCCTCTTATCA+AGG 0.494694 8_3:+61337172 None:intergenic
ACAATTTGGATCGCCAGGAA+TGG 0.495255 8_3:+61338551 None:intergenic
ACACGCCATGTAGACTCAAA+TGG 0.499154 8_3:+61340746 None:intergenic
TATGGTAATGCTGTCTACTT+AGG 0.499623 8_3:-61337395 Msa1299960:CDS
TTTCTTCTTAAACAGTTCAC+TGG 0.500344 8_3:-61337075 Msa1299960:three_prime_UTR
ATTACCGGAGGTGGTGCCAC+TGG 0.507503 8_3:+61340435 None:intergenic
TTGCGAGCAACATAAAGCTA+TGG 0.513296 8_3:-61342013 Msa1299960:CDS
CTTGATAAGAGGGTTGGTAG+AGG 0.514179 8_3:-61337171 Msa1299960:CDS
AGTTAAAAGAGTGGCTAGCA+AGG 0.514494 8_3:-61342079 Msa1299960:CDS
CAAATAGCCCTAATGCGATT+GGG 0.514547 8_3:+61343125 None:intergenic
TTAAGAAACGCAACACCTCC+AGG 0.517868 8_3:+61337828 None:intergenic
ACCAAACTCCTTGTTGGAGA+TGG 0.518072 8_3:+61337567 None:intergenic
AGATTTGATTGCTACATAGC+TGG 0.523268 8_3:-61338478 Msa1299960:CDS
AAATCTGCCTATCTTGCTGC+TGG 0.523802 8_3:-61342801 Msa1299960:CDS
TTGCTACATAGCTGGTGGAC+AGG 0.524629 8_3:-61338470 Msa1299960:intron
TGGAAGTCCATTACCGGAGG+TGG 0.529388 8_3:+61340426 None:intergenic
CCCGTCCATTTGAGTCTACA+TGG 0.530403 8_3:-61340751 Msa1299960:CDS
TGTAAATATTGACATTTGGT+CGG 0.531930 8_3:-61336878 Msa1299960:three_prime_UTR
GGTATGCAGAAGTCGTGCTC+TGG 0.535477 8_3:-61337942 Msa1299960:CDS
GGAATATTGAATTTAAAGAC+AGG 0.536240 8_3:-61336850 Msa1299960:three_prime_UTR
GTTGACTGGGACGTTCATCA+TGG 0.546642 8_3:-61341786 Msa1299960:CDS
CGAAGCACTAGAATAAGGTC+TGG 0.550936 8_3:+61337032 None:intergenic
TGCGAGCAACATAAAGCTAT+GGG 0.552495 8_3:-61342012 Msa1299960:CDS
AATTGTCAAATGTTCACGTA+TGG 0.558160 8_3:-61338534 Msa1299960:CDS
GATTAAATTCTTTGGCTACA+GGG 0.558267 8_3:+61341347 None:intergenic
GATACAATATAAATGTGCCA+TGG 0.558938 8_3:-61341426 Msa1299960:CDS
GTCTGAGACTGAGGATGACA+AGG 0.560109 8_3:-61339738 Msa1299960:CDS
TTCGTAAATACATCATGTGT+GGG 0.561547 8_3:-61336986 Msa1299960:three_prime_UTR
TGGGACAAGCTCCAAACCAC+TGG 0.564334 8_3:-61343104 Msa1299960:CDS
GATGTGTAAGCACTACGATC+CGG 0.564728 8_3:-61343171 Msa1299960:CDS
ATTGGAGAAGGAGATGGTGC+TGG 0.565299 8_3:-61341448 Msa1299960:CDS
CGACCGAACAATATATGACA+AGG 0.566019 8_3:+61337873 None:intergenic
CAAGGAGTTTGGTTCTCAGG+AGG 0.567137 8_3:-61337557 Msa1299960:CDS
TAAAGCATTATGATTTGCGT+AGG 0.568869 8_3:-61337099 Msa1299960:exon
TGGGACGTTCATCATGGAAA+CGG 0.569267 8_3:-61341780 Msa1299960:CDS
ATAAATGATTCGCAGGTGGA+AGG 0.573363 8_3:-61337963 Msa1299960:intron
TTTCGTAAATACATCATGTG+TGG 0.574726 8_3:-61336987 Msa1299960:three_prime_UTR
TGTGAATGACAGCCAGAACT+TGG 0.577648 8_3:-61341828 Msa1299960:intron
GCCTCTTATGGGGTCTTCAG+AGG 0.577693 8_3:-61340774 Msa1299960:CDS
TTGATAAGAGGGTTGGTAGA+GGG 0.578480 8_3:-61337170 Msa1299960:CDS
TGATGCAACATCCACCCAAA+GGG 0.578835 8_3:+61341180 None:intergenic
AAACCACTGGCATTACTGAT+CGG 0.580941 8_3:-61343091 Msa1299960:intron
TCAACTTTGAGGTTGGAAAG+TGG 0.581013 8_3:+61339665 None:intergenic
GAATAAAACTCTTCCAGATG+AGG 0.581241 8_3:-61337913 Msa1299960:CDS
CAATACCTTGATAAGAGGGT+TGG 0.583144 8_3:-61337177 Msa1299960:CDS
AGCGTCGAAGCACTAGAATA+AGG 0.583943 8_3:+61337027 None:intergenic
AGTAATCAACAACGTCGCGT+TGG 0.586103 8_3:-61343212 Msa1299960:CDS
CCATGTAGACTCAAATGGAC+GGG 0.586830 8_3:+61340751 None:intergenic
ATACAATATAAATGTGCCAT+GGG 0.589521 8_3:-61341425 Msa1299960:CDS
CATACAGGCATGAATTTGGG+AGG 0.591132 8_3:-61341507 Msa1299960:intron
TTTGATTGCTACATAGCTGG+TGG 0.592071 8_3:-61338475 Msa1299960:CDS
GCTATAAGAGTTATAATACA+AGG 0.594702 8_3:-61342875 Msa1299960:CDS
CAAACAGGCAGTTAAAAGAG+TGG 0.595633 8_3:-61342088 Msa1299960:intron
GTTGTGCAGAATGGTTGGTA+TGG 0.596309 8_3:-61337413 Msa1299960:intron
CTAAATTCGGAGCGGAAGGG+AGG 0.596788 8_3:-61343372 Msa1299960:five_prime_UTR
TGCAGACTATTTAGCAGCGT+GGG 0.599137 8_3:-61341383 Msa1299960:CDS
AAATGTTGCAGAGCTTCTTG+AGG 0.599516 8_3:-61339699 Msa1299960:CDS
TGTTGCTCGCAATGATGACC+TGG 0.600137 8_3:+61342024 None:intergenic
GTGATGCAACATCCACCCAA+AGG 0.601213 8_3:+61341179 None:intergenic
TAAATTCGGAGCGGAAGGGA+GGG 0.604075 8_3:-61343371 Msa1299960:five_prime_UTR
TGCGATTGGGAGTTTCGGGA+TGG 0.604523 8_3:+61343138 None:intergenic
AAGCTCTGAGTCTGAGACTG+AGG 0.606543 8_3:-61339747 Msa1299960:CDS
AATTCTATATATTTCAACGA+AGG 0.608574 8_3:-61342831 Msa1299960:CDS
GCGAGAACCAAACGAAACAA+TGG 0.611853 8_3:-61343267 Msa1299960:exon
TAATGCTGTCTACTTAGGAA+AGG 0.613597 8_3:-61337390 Msa1299960:CDS
ACGCCAATACCTTGATAAGA+GGG 0.617113 8_3:-61337181 Msa1299960:CDS
CCTCTAAATTCGGAGCGGAA+GGG 0.618112 8_3:-61343375 Msa1299960:five_prime_UTR
GCCATGTAGACTCAAATGGA+CGG 0.618806 8_3:+61340750 None:intergenic
TGGCTACAGGGAGCAAGATG+TGG 0.619050 8_3:+61341359 None:intergenic
TCACATTCATGGGGTCCTGG+AGG 0.622623 8_3:-61337843 Msa1299960:CDS
ATAAAGCAGAGTCTACATCA+AGG 0.625225 8_3:+61337611 None:intergenic
CCACATCTCCCATTCTCCCA+TGG 0.625225 8_3:+61341409 None:intergenic
ACAAAATATAATTTGTCCAG+TGG 0.625686 8_3:-61340451 Msa1299960:CDS
TCCAGGACCCCATGAATGTG+AGG 0.626644 8_3:+61337845 None:intergenic
AAGAGCTCAATATCAAGAAG+CGG 0.628809 8_3:+61337245 None:intergenic
AGCAGCGTCTATGTAAGCAA+TGG 0.629498 8_3:+61337124 None:intergenic
TTGAAGACAAGCCTCTTATG+GGG 0.637633 8_3:-61340784 Msa1299960:CDS
ATAATTGACACACCTGTGAA+CGG 0.639026 8_3:+61341713 None:intergenic
AACAGAAGGGAATAACCAGA+TGG 0.641250 8_3:+61341155 None:intergenic
AAAATCAATGCATGCTTGTG+TGG 0.642624 8_3:-61340816 Msa1299960:CDS
ATAATGTTGTGCAGAATGGT+TGG 0.642634 8_3:-61337418 Msa1299960:intron
GGTAATTCACAAGCAAGTGT+AGG 0.642953 8_3:+61340474 None:intergenic
GACCGAACAATATATGACAA+GGG 0.647299 8_3:+61337874 None:intergenic
TTGGTTTACTCTACGACGAG+AGG 0.649780 8_3:-61343193 Msa1299960:CDS
AGAGGGAGAACAGCTCTCAG+AGG 0.657512 8_3:-61337153 Msa1299960:CDS
TTTGAATGCCATCTCCAACA+AGG 0.659086 8_3:-61337575 Msa1299960:CDS
GCTGTTGGAGACCCTTTGGG+TGG 0.666084 8_3:-61341191 Msa1299960:CDS
ATGCAGACTATTTAGCAGCG+TGG 0.666296 8_3:-61341384 Msa1299960:CDS
TGCTCGCAATGATGACCTGG+AGG 0.669427 8_3:+61342027 None:intergenic
AACATGATTGGAGAAGGAGA+TGG 0.669670 8_3:-61341454 Msa1299960:CDS
CGTGAATCCTCACATTCATG+GGG 0.673288 8_3:-61337852 Msa1299960:CDS
CCATGGGAGAATGGGAGATG+TGG 0.674342 8_3:-61341409 Msa1299960:CDS
AAAAGGGACTTAACTCCTCG+CGG 0.678604 8_3:+61340499 None:intergenic
TTACCGATCAGTAATGCCAG+TGG 0.681744 8_3:+61343088 None:intergenic
GATTTATTAGGCACACACAA+TGG 0.682354 8_3:+61337206 None:intergenic
TAAAAGCCATCATCACCACA+TGG 0.695133 8_3:+61341478 None:intergenic
ACACTCCTCTAAATTCGGAG+CGG 0.715932 8_3:-61343380 Msa1299960:five_prime_UTR
TGAAGACAAACATTTACTAG+CGG 0.720194 8_3:-61342937 Msa1299960:CDS
TACATGGCGTGTGATCCAAG+CGG 0.785159 8_3:-61340735 Msa1299960:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTTTATATATTATT+GGG + chr8_3:61340545-61340564 None:intergenic 0.0%
!!! TTTTAAATTTTATATATTAT+TGG + chr8_3:61340546-61340565 None:intergenic 0.0%
!!! ATAATTTTTAGTCTTTTTTT+TGG - chr8_3:61338895-61338914 Msa1299960:intron 10.0%
!!! TAATTTTTAGTCTTTTTTTT+GGG - chr8_3:61338896-61338915 Msa1299960:intron 10.0%
!! AAAATATAAATAAACCAAAA+AGG + chr8_3:61339184-61339203 None:intergenic 10.0%
!!! TAATTTTTTTATTGGTATTA+TGG - chr8_3:61341008-61341027 Msa1299960:intron 10.0%
!! GAAATATATAGAATTAAGTT+TGG + chr8_3:61337336-61337355 None:intergenic 15.0%
!! AAAACCATATAAGAAAATAA+AGG + chr8_3:61338320-61338339 None:intergenic 15.0%
!!! CTTTTATATTAAATACACTT+CGG + chr8_3:61339139-61339158 None:intergenic 15.0%
!! ATAAACAAATTAAGCTAAAT+AGG + chr8_3:61340319-61340338 None:intergenic 15.0%
!! AATGAATGAAATATAACTAT+TGG + chr8_3:61341800-61341819 None:intergenic 15.0%
!! TATGAATATCATTACATATA+TGG + chr8_3:61342890-61342909 None:intergenic 15.0%
!!! ATTTTGTAAATATTGACATT+TGG - chr8_3:61343290-61343309 Msa1299960:five_prime_UTR 15.0%
!!! AATCAGATTAACATGATTTT+TGG + chr8_3:61337267-61337286 None:intergenic 20.0%
!! AATTCTATATATTTCAACGA+AGG - chr8_3:61337341-61337360 Msa1299960:intron 20.0%
!! ATTATGTTCATGACTAATTT+AGG - chr8_3:61337640-61337659 Msa1299960:CDS 20.0%
!! AATGAGTTTGTATTTATTCA+TGG - chr8_3:61338022-61338041 Msa1299960:intron 20.0%
!!! AGAAAATTTTAATTGTTGAC+TGG - chr8_3:61338372-61338391 Msa1299960:intron 20.0%
!!! GAAAATTTTAATTGTTGACT+GGG - chr8_3:61338373-61338392 Msa1299960:intron 20.0%
!!! AATTATTGTTGTGTATTTTC+TGG - chr8_3:61338476-61338495 Msa1299960:CDS 20.0%
!!! CATTTCTTTTTCTTTCTTTT+TGG - chr8_3:61340106-61340125 Msa1299960:intron 20.0%
!! AAACAAAATTTGTCTATATC+TGG + chr8_3:61340207-61340226 None:intergenic 20.0%
!! TAAAATATGTAATACAAGGT+AGG + chr8_3:61341757-61341776 None:intergenic 20.0%
!! TCGTTAAAATATGTAATACA+AGG + chr8_3:61341761-61341780 None:intergenic 20.0%
!! TAGTTATATTTCATTCATTC+CGG - chr8_3:61341801-61341820 Msa1299960:CDS 20.0%
!! ATAAATAAATTAAATGCTGC+CGG + chr8_3:61341823-61341842 None:intergenic 20.0%
!! ATATTCATATTAACTTAACC+AGG - chr8_3:61342901-61342920 Msa1299960:CDS 20.0%
!! AAAGAAAAATTAGATGACAT+CGG + chr8_3:61343387-61343406 None:intergenic 20.0%
!!! GATTAACATGATTTTTGGTA+TGG + chr8_3:61337262-61337281 None:intergenic 25.0%
! GCTATAAGAGTTATAATACA+AGG - chr8_3:61337297-61337316 Msa1299960:intron 25.0%
!!! TGAAAGCAATTTTCTAGAAA+TGG + chr8_3:61337542-61337561 None:intergenic 25.0%
! ATATGAATTTGATCACCAAT+AGG - chr8_3:61337714-61337733 Msa1299960:intron 25.0%
! TTCTATTAGTAAACTCCTAT+TGG + chr8_3:61337732-61337751 None:intergenic 25.0%
! CATATTAAGTGTGAGATTTA+GGG + chr8_3:61337997-61338016 None:intergenic 25.0%
! TTGTAAAATCATCTTCAGTT+AGG + chr8_3:61338067-61338086 None:intergenic 25.0%
! TAAAGTAACTAACTGATCAA+AGG + chr8_3:61338292-61338311 None:intergenic 25.0%
!!! TGCTCCTTTATTTTCTTATA+TGG - chr8_3:61338313-61338332 Msa1299960:intron 25.0%
!! TTTTATAACATGATTGGAGA+AGG - chr8_3:61338712-61338731 Msa1299960:intron 25.0%
! ATACAATATAAATGTGCCAT+GGG - chr8_3:61338747-61338766 Msa1299960:intron 25.0%
! TATGTCTGGATTAAATTCTT+TGG + chr8_3:61338836-61338855 None:intergenic 25.0%
!!! AAAAGGTTGCTTTTTAAAAC+CGG - chr8_3:61339042-61339061 Msa1299960:intron 25.0%
!!! TATGTTTTTACCTTCTCTTA+CGG - chr8_3:61339481-61339500 Msa1299960:intron 25.0%
!! CAACTATTTTCTTTTTCCTT+GGG - chr8_3:61339505-61339524 Msa1299960:intron 25.0%
!! AACTATTTTCTTTTTCCTTG+GGG - chr8_3:61339506-61339525 Msa1299960:intron 25.0%
! TGTAGATCAAAAGCAAAAAT+AGG + chr8_3:61339610-61339629 None:intergenic 25.0%
!! ACTGGACAAATTATATTTTG+TGG + chr8_3:61339722-61339741 None:intergenic 25.0%
!! ACAAAATATAATTTGTCCAG+TGG - chr8_3:61339721-61339740 Msa1299960:CDS 25.0%
! CACATTAAAAGAATTAACTG+TGG + chr8_3:61339783-61339802 None:intergenic 25.0%
! TGTTGTGTAAATCACTTTAA+AGG - chr8_3:61339815-61339834 Msa1299960:intron 25.0%
! CATATCAATAAAACTTTGCT+CGG + chr8_3:61340012-61340031 None:intergenic 25.0%
! TTTATTGATATGATGTTCAG+TGG - chr8_3:61340020-61340039 Msa1299960:intron 25.0%
! ATAGTATATTAACTAACTCC+CGG + chr8_3:61340078-61340097 None:intergenic 25.0%
!! ACAACAACGTTATATCATTT+TGG + chr8_3:61340132-61340151 None:intergenic 25.0%
! AACAAATACAGCAAGAAAAA+GGG + chr8_3:61340359-61340378 None:intergenic 25.0%
! AAACAAATACAGCAAGAAAA+AGG + chr8_3:61340360-61340379 None:intergenic 25.0%
!! GCAACATTTTCTAATTTTGA+TGG + chr8_3:61340462-61340481 None:intergenic 25.0%
!! CATAGAGAATTCTTTTAATC+TGG + chr8_3:61340733-61340752 None:intergenic 25.0%
! ACCAATAAAAAAATTACCCA+GGG + chr8_3:61341004-61341023 None:intergenic 25.0%
! TACCAATAAAAAAATTACCC+AGG + chr8_3:61341005-61341024 None:intergenic 25.0%
! ATTTCGTTGAAACTCTTAAA+CGG + chr8_3:61341352-61341371 None:intergenic 25.0%
! AGAAAACGAAAGAAATTTCA+GGG + chr8_3:61341952-61341971 None:intergenic 25.0%
! AAGAAAACGAAAGAAATTTC+AGG + chr8_3:61341953-61341972 None:intergenic 25.0%
!!! ATCATTTTGTAATTTGCTGT+AGG - chr8_3:61341985-61342004 Msa1299960:CDS 25.0%
! AACAGAAGAAACAAAGAAAA+AGG + chr8_3:61342163-61342182 None:intergenic 25.0%
! TTCAAAAAACATGACATTGT+CGG - chr8_3:61342475-61342494 Msa1299960:intron 25.0%
!!! GATGTTTTATTTCAGGAAAA+TGG - chr8_3:61342532-61342551 Msa1299960:intron 25.0%
! AAGAATAAGTCAACCAAATA+CGG + chr8_3:61342864-61342883 None:intergenic 25.0%
! TGTAAATATTGACATTTGGT+CGG - chr8_3:61343294-61343313 Msa1299960:five_prime_UTR 25.0%
! GGAATATTGAATTTAAAGAC+AGG - chr8_3:61343322-61343341 Msa1299960:five_prime_UTR 25.0%
AACAAACACTCCTCTAAATT+CGG - chr8_3:61336787-61336806 Msa1299960:three_prime_UTR 30.0%
! TCTGAAATGCGATAAAACAA+TGG + chr8_3:61337189-61337208 None:intergenic 30.0%
TGAAGACAAACATTTACTAG+CGG - chr8_3:61337235-61337254 Msa1299960:CDS 30.0%
TAATCTACCAAATTCCTACT+AGG + chr8_3:61337476-61337495 None:intergenic 30.0%
GTTCCTACCAAATGTAAAAT+GGG - chr8_3:61337605-61337624 Msa1299960:CDS 30.0%
! AACACAACCCATTTTACATT+TGG + chr8_3:61337615-61337634 None:intergenic 30.0%
ATTTCCCATTACCATTAATG+AGG + chr8_3:61337690-61337709 None:intergenic 30.0%
AGGAGTTTACTAATAGAAAC+TGG - chr8_3:61337734-61337753 Msa1299960:intron 30.0%
TGTTGAATTGTAACAATCCA+CGG + chr8_3:61337818-61337837 None:intergenic 30.0%
GGATTGTTACAATTCAACAA+AGG - chr8_3:61337819-61337838 Msa1299960:CDS 30.0%
CCATATTAAGTGTGAGATTT+AGG + chr8_3:61337998-61338017 None:intergenic 30.0%
CCTAAATCTCACACTTAATA+TGG - chr8_3:61337995-61338014 Msa1299960:intron 30.0%
! CTGAAGATGATTTTACAAAC+AGG - chr8_3:61338069-61338088 Msa1299960:intron 30.0%
! ATTTTGTCTATTCAACAACG+TGG - chr8_3:61338183-61338202 Msa1299960:intron 30.0%
! ATTTTCTTTACACCAAGTTC+TGG + chr8_3:61338359-61338378 None:intergenic 30.0%
!!! TATTTTCTGGTTATCTTCAC+TGG - chr8_3:61338489-61338508 Msa1299960:CDS 30.0%
! TCCTTTTGAACTGGAAAATT+AGG - chr8_3:61338570-61338589 Msa1299960:CDS 30.0%
! CCTTTTGAACTGGAAAATTA+GGG - chr8_3:61338571-61338590 Msa1299960:CDS 30.0%
! GATGGCTTTTATAACATGAT+TGG - chr8_3:61338706-61338725 Msa1299960:intron 30.0%
GATACAATATAAATGTGCCA+TGG - chr8_3:61338746-61338765 Msa1299960:intron 30.0%
GATTAAATTCTTTGGCTACA+GGG + chr8_3:61338828-61338847 None:intergenic 30.0%
GCAGAAACTATAATTATGTC+TGG + chr8_3:61338850-61338869 None:intergenic 30.0%
GACATAATTATAGTTTCTGC+TGG - chr8_3:61338850-61338869 Msa1299960:intron 30.0%
TTATTCCCTTCTGTTGAAAA+AGG - chr8_3:61339025-61339044 Msa1299960:intron 30.0%
! GATATTAAGTGTGTCCTTTT+TGG - chr8_3:61339167-61339186 Msa1299960:intron 30.0%
!! ATGTTTTTACCTTCTCTTAC+GGG - chr8_3:61339482-61339501 Msa1299960:intron 30.0%
! GCAACTATTTTCTTTTTCCT+TGG - chr8_3:61339504-61339523 Msa1299960:intron 30.0%
TAAAACTGGCAAAGAAGAAA+TGG + chr8_3:61339551-61339570 None:intergenic 30.0%
TAACTGTGGAAAAAGAATCA+TGG + chr8_3:61339769-61339788 None:intergenic 30.0%
! AAATCACTTTAAAGGTTGTG+TGG - chr8_3:61339823-61339842 Msa1299960:intron 30.0%
TAGTATATTAACTAACTCCC+GGG + chr8_3:61340077-61340096 None:intergenic 30.0%
CTGTAGATTATGTTAGAGTA+TGG - chr8_3:61340229-61340248 Msa1299960:intron 30.0%
TTATGTTAGAGTATGGTGAT+AGG - chr8_3:61340236-61340255 Msa1299960:intron 30.0%
! TTAAAATTTGAGGCACACTT+TGG - chr8_3:61340560-61340579 Msa1299960:intron 30.0%
CAGAAATACCAAATCTAATC+TGG + chr8_3:61340675-61340694 None:intergenic 30.0%
! ATAGTTTATTTGAAGTGCCT+AGG - chr8_3:61340792-61340811 Msa1299960:CDS 30.0%
AGTGAACAACGACTATAAAT+AGG + chr8_3:61340833-61340852 None:intergenic 30.0%
! TTCCTCTTTTCAAATTGCAT+GGG - chr8_3:61340852-61340871 Msa1299960:CDS 30.0%
TGGTATTTAAAGACTTTCCT+CGG - chr8_3:61341306-61341325 Msa1299960:intron 30.0%
! TAGCCTATAAATTAGCTTGA+TGG - chr8_3:61341460-61341479 Msa1299960:CDS 30.0%
GGTTCAATAGCTATAAGATA+TGG - chr8_3:61341532-61341551 Msa1299960:intron 30.0%
CAATAGCTATAAGATATGGT+AGG - chr8_3:61341536-61341555 Msa1299960:intron 30.0%
TACGTGAACATTTGACAATT+TGG + chr8_3:61341638-61341657 None:intergenic 30.0%
AATTGTCAAATGTTCACGTA+TGG - chr8_3:61341638-61341657 Msa1299960:intron 30.0%
GAAAAAGGAAACATTGAACA+TGG + chr8_3:61342148-61342167 None:intergenic 30.0%
TTCCCTTGTCATATATTGTT+CGG - chr8_3:61342296-61342315 Msa1299960:intron 30.0%
! AATTTTGTACATGCACATGT+AGG + chr8_3:61342396-61342415 None:intergenic 30.0%
ATTTCGTAAGTAAATCTGTC+TGG - chr8_3:61342413-61342432 Msa1299960:intron 30.0%
!!! GACAATGTCATGTTTTTTGA+AGG + chr8_3:61342476-61342495 None:intergenic 30.0%
TCAAAAAACATGACATTGTC+GGG - chr8_3:61342476-61342495 Msa1299960:intron 30.0%
!!! GTTCAACGATGTTTTATTTC+AGG - chr8_3:61342525-61342544 Msa1299960:intron 30.0%
!! AGACTCTGCTTTATTTGATA+TGG - chr8_3:61342570-61342589 Msa1299960:intron 30.0%
AATCACTCAGAAAATGAGTA+GGG + chr8_3:61342664-61342683 None:intergenic 30.0%
TAATCACTCAGAAAATGAGT+AGG + chr8_3:61342665-61342684 None:intergenic 30.0%
TAGTTGCACTTAATTGAATG+AGG + chr8_3:61342705-61342724 None:intergenic 30.0%
ACTCACGTCATAGTAATTAT+GGG + chr8_3:61342819-61342838 None:intergenic 30.0%
TACTCACGTCATAGTAATTA+TGG + chr8_3:61342820-61342839 None:intergenic 30.0%
TGACGTGAGTAACAAATTAT+TGG - chr8_3:61342829-61342848 Msa1299960:CDS 30.0%
! GTATTTGGTTGACTTATTCT+TGG - chr8_3:61342863-61342882 Msa1299960:CDS 30.0%
ATATTGAGCTCTTCAAATCT+GGG - chr8_3:61342937-61342956 Msa1299960:CDS 30.0%
! TAAAGCATTATGATTTGCGT+AGG - chr8_3:61343073-61343092 Msa1299960:intron 30.0%
TTTCTTCTTAAACAGTTCAC+TGG - chr8_3:61343097-61343116 Msa1299960:CDS 30.0%
TTTCGTAAATACATCATGTG+TGG - chr8_3:61343185-61343204 Msa1299960:CDS 30.0%
TTCGTAAATACATCATGTGT+GGG - chr8_3:61343186-61343205 Msa1299960:CDS 30.0%
TCAAAATTTAGAAGCAATGC+TGG + chr8_3:61343238-61343257 None:intergenic 30.0%
!! TTGCTTCTAAATTTTGATGC+TGG - chr8_3:61343241-61343260 Msa1299960:CDS 30.0%
!!! TTTTGATGCTGGCTTTTAAA+TGG - chr8_3:61343252-61343271 Msa1299960:exon 30.0%
! AGGGAAACGAAAATCACTTT+TGG - chr8_3:61336820-61336839 Msa1299960:three_prime_UTR 35.0%
!!! ACGTTGTTGATTACTGGTTT+TGG + chr8_3:61336955-61336974 None:intergenic 35.0%
TGATCGGTAATCATCACATT+AGG - chr8_3:61337097-61337116 Msa1299960:exon 35.0%
GATCGGTAATCATCACATTA+GGG - chr8_3:61337098-61337117 Msa1299960:exon 35.0%
ACATGTTTGAATGACCTAGT+AGG - chr8_3:61337459-61337478 Msa1299960:intron 35.0%
TGAATGACCTAGTAGGAATT+TGG - chr8_3:61337466-61337485 Msa1299960:intron 35.0%
TGATGGGATCAATGCTTATA+GGG + chr8_3:61337503-61337522 None:intergenic 35.0%
! ATGATGGGATCAATGCTTAT+AGG + chr8_3:61337504-61337523 None:intergenic 35.0%
!! ATAAGCATTGATCCCATCAT+TGG - chr8_3:61337504-61337523 Msa1299960:intron 35.0%
AAGTTTCTCACTCCAATGAT+GGG + chr8_3:61337519-61337538 None:intergenic 35.0%
GGTTCCTACCAAATGTAAAA+TGG - chr8_3:61337604-61337623 Msa1299960:CDS 35.0%
! CAACCCATTTTACATTTGGT+AGG + chr8_3:61337611-61337630 None:intergenic 35.0%
AGAGAAAGTCTCCTCATTAA+TGG - chr8_3:61337676-61337695 Msa1299960:intron 35.0%
AGTCTCCTCATTAATGGTAA+TGG - chr8_3:61337682-61337701 Msa1299960:intron 35.0%
GTCTCCTCATTAATGGTAAT+GGG - chr8_3:61337683-61337702 Msa1299960:intron 35.0%
CTTTGTAATGTTCTTCTCTG+TGG - chr8_3:61337771-61337790 Msa1299960:intron 35.0%
!! TATTTTTACAATTCCTCCCG+TGG - chr8_3:61337798-61337817 Msa1299960:CDS 35.0%
GTTGAATTGTAACAATCCAC+GGG + chr8_3:61337817-61337836 None:intergenic 35.0%
!! AAAATTGCTGACTTGTGATG+TGG - chr8_3:61337901-61337920 Msa1299960:CDS 35.0%
CAGCATAAAATAAGAGGAAG+AGG + chr8_3:61337950-61337969 None:intergenic 35.0%
!!! CTCTTCCTCTTATTTTATGC+TGG - chr8_3:61337948-61337967 Msa1299960:CDS 35.0%
TGTTGCCAGCATAAAATAAG+AGG + chr8_3:61337956-61337975 None:intergenic 35.0%
TTAAGTGTGAGATTTAGGGA+GGG + chr8_3:61337993-61338012 None:intergenic 35.0%
ATTAAGTGTGAGATTTAGGG+AGG + chr8_3:61337994-61338013 None:intergenic 35.0%
! AATCTGCTGTTGCTATTGTT+AGG - chr8_3:61338122-61338141 Msa1299960:intron 35.0%
!!! ACGGTACTCAAAAAGTGTTT+TGG - chr8_3:61338411-61338430 Msa1299960:intron 35.0%
ATAATTGACACACCTGTGAA+CGG + chr8_3:61338462-61338481 None:intergenic 35.0%
ACTAGTTAATCCAATCGAGT+TGG - chr8_3:61338531-61338550 Msa1299960:CDS 35.0%
AAAAGGAAGAAACAGTCTAG+CGG + chr8_3:61338557-61338576 None:intergenic 35.0%
!! ACTGTTTCTTCCTTTTGAAC+TGG - chr8_3:61338561-61338580 Msa1299960:CDS 35.0%
! CCCTAATTTTCCAGTTCAAA+AGG + chr8_3:61338574-61338593 None:intergenic 35.0%
! GTATGAACAGGAAAGTTGAT+AGG + chr8_3:61338650-61338669 None:intergenic 35.0%
ATCAACTTTCCTGTTCATAC+AGG - chr8_3:61338650-61338669 Msa1299960:intron 35.0%
AAATTCATGCCTGTATGAAC+AGG + chr8_3:61338662-61338681 None:intergenic 35.0%
TGTTCATACAGGCATGAATT+TGG - chr8_3:61338661-61338680 Msa1299960:intron 35.0%
GTTCATACAGGCATGAATTT+GGG - chr8_3:61338662-61338681 Msa1299960:intron 35.0%
!! TTTTATCCATGTGGTGATGA+TGG - chr8_3:61338688-61338707 Msa1299960:intron 35.0%
GGATTAAATTCTTTGGCTAC+AGG + chr8_3:61338829-61338848 None:intergenic 35.0%
!!! TTTTTGGGTTACCTTGTGTT+TGG - chr8_3:61338911-61338930 Msa1299960:intron 35.0%
!!! TTTTGGGTTACCTTGTGTTT+GGG - chr8_3:61338912-61338931 Msa1299960:intron 35.0%
!!! TTTTTTCGTGTAACAGCTGT+TGG - chr8_3:61338966-61338985 Msa1299960:intron 35.0%
!!! AGCAACCTTTTTCAACAGAA+GGG + chr8_3:61339033-61339052 None:intergenic 35.0%
!!! AAGCAACCTTTTTCAACAGA+AGG + chr8_3:61339034-61339053 None:intergenic 35.0%
AAGTTGTAAGCAAGAAAAGC+CGG + chr8_3:61339064-61339083 None:intergenic 35.0%
!!! CAGTTGATGAATTTTGCTGA+AGG - chr8_3:61339285-61339304 Msa1299960:intron 35.0%
! TGATGAATTTTGCTGAAGGT+AGG - chr8_3:61339289-61339308 Msa1299960:intron 35.0%
!!! AGGATTGTACTGGTTTTAGA+AGG - chr8_3:61339309-61339328 Msa1299960:intron 35.0%
!!! ATTGTACTGGTTTTAGAAGG+TGG - chr8_3:61339312-61339331 Msa1299960:intron 35.0%
AAAATCAATGCATGCTTGTG+TGG - chr8_3:61339356-61339375 Msa1299960:intron 35.0%
AGGATTCTCATGTACATCTA+AGG + chr8_3:61339590-61339609 None:intergenic 35.0%
AGCTGATTGCTTTAGTACTA+AGG - chr8_3:61339629-61339648 Msa1299960:intron 35.0%
TGATTGCTTTAGTACTAAGG+TGG - chr8_3:61339632-61339651 Msa1299960:intron 35.0%
GATTGCTTTAGTACTAAGGT+GGG - chr8_3:61339633-61339652 Msa1299960:intron 35.0%
CAACTTGTGTAAGTCAATGA+AGG + chr8_3:61340046-61340065 None:intergenic 35.0%
AGTATATTAACTAACTCCCG+GGG + chr8_3:61340076-61340095 None:intergenic 35.0%
TGATTTGAGTATGATGCTAG+AGG - chr8_3:61340278-61340297 Msa1299960:intron 35.0%
GACAATAGAGTATGCTGTAA+AGG + chr8_3:61340405-61340424 None:intergenic 35.0%
CACTATTTGACTCCTTATAC+TGG - chr8_3:61340611-61340630 Msa1299960:intron 35.0%
TATTTGACTCCTTATACTGG+TGG - chr8_3:61340614-61340633 Msa1299960:intron 35.0%
TACCAAATCTAATCTGGTAG+AGG + chr8_3:61340669-61340688 None:intergenic 35.0%
! TGGTATTTCTGCAGTGATAA+TGG - chr8_3:61340684-61340703 Msa1299960:intron 35.0%
! GGTATTTCTGCAGTGATAAT+GGG - chr8_3:61340685-61340704 Msa1299960:intron 35.0%
! GTATTTCTGCAGTGATAATG+GGG - chr8_3:61340686-61340705 Msa1299960:intron 35.0%
!! TATTTCTGCAGTGATAATGG+GGG - chr8_3:61340687-61340706 Msa1299960:intron 35.0%
TTAATCTGGAGAGTTGTCTT+GGG + chr8_3:61340719-61340738 None:intergenic 35.0%
TTTAATCTGGAGAGTTGTCT+TGG + chr8_3:61340720-61340739 None:intergenic 35.0%
! CTTCCTCTTTTCAAATTGCA+TGG - chr8_3:61340851-61340870 Msa1299960:CDS 35.0%
AACCCATGCAATTTGAAAAG+AGG + chr8_3:61340857-61340876 None:intergenic 35.0%
!!! GCCCTGGGTAATTTTTTTAT+TGG - chr8_3:61341000-61341019 Msa1299960:intron 35.0%
TTTGGAAGGTTTACTCTAGA+GGG + chr8_3:61341084-61341103 None:intergenic 35.0%
ATTTGGAAGGTTTACTCTAG+AGG + chr8_3:61341085-61341104 None:intergenic 35.0%
! TCTAGAGTAAACCTTCCAAA+TGG - chr8_3:61341084-61341103 Msa1299960:intron 35.0%
AGTGAAGTGCATTGTTGAAA+GGG + chr8_3:61341168-61341187 None:intergenic 35.0%
TGTAACTTTCTGTGTGTCTA+TGG - chr8_3:61341286-61341305 Msa1299960:intron 35.0%
GGTATTTAAAGACTTTCCTC+GGG - chr8_3:61341307-61341326 Msa1299960:intron 35.0%
!! TGGTTTGTTAATGCTTACAC+TGG - chr8_3:61341420-61341439 Msa1299960:CDS 35.0%
TAATGCTTACACTGGAATCA+AGG - chr8_3:61341428-61341447 Msa1299960:CDS 35.0%
GGTCCATCAAGCTAATTTAT+AGG + chr8_3:61341466-61341485 None:intergenic 35.0%
CTTCTTATGGCTCAAATATG+TGG - chr8_3:61341665-61341684 Msa1299960:intron 35.0%
GCTATGTAGCAATCAAATCT+TGG + chr8_3:61341694-61341713 None:intergenic 35.0%
AGATTTGATTGCTACATAGC+TGG - chr8_3:61341694-61341713 Msa1299960:intron 35.0%
AATTGCTGCCTGTAAAAGAA+AGG - chr8_3:61341917-61341936 Msa1299960:intron 35.0%
ATTGCTGCCTGTAAAAGAAA+GGG - chr8_3:61341918-61341937 Msa1299960:intron 35.0%
!! TGTAATTTGCTGTAGGTGAT+CGG - chr8_3:61341992-61342011 Msa1299960:CDS 35.0%
AGCACAAGATTTAATCCCAT+CGG + chr8_3:61342044-61342063 None:intergenic 35.0%
ATCTTGTGCTTTCAAACTGT+AGG - chr8_3:61342054-61342073 Msa1299960:CDS 35.0%
TCTTGTGCTTTCAAACTGTA+GGG - chr8_3:61342055-61342074 Msa1299960:CDS 35.0%
TGGAAGCAAGAAGTGAAATA+TGG + chr8_3:61342128-61342147 None:intergenic 35.0%
AGATCCAATAAATGATTCGC+AGG - chr8_3:61342202-61342221 Msa1299960:intron 35.0%
GAATAAAACTCTTCCAGATG+AGG - chr8_3:61342259-61342278 Msa1299960:intron 35.0%
GACCGAACAATATATGACAA+GGG + chr8_3:61342301-61342320 None:intergenic 35.0%
! TTGTGCTGAGAATTTTTCTC+AGG + chr8_3:61342371-61342390 None:intergenic 35.0%
ATAAAGCAGAGTCTACATCA+AGG + chr8_3:61342564-61342583 None:intergenic 35.0%
! TCTGATAATGTTGTGCAGAA+TGG - chr8_3:61342750-61342769 Msa1299960:intron 35.0%
ATAATGTTGTGCAGAATGGT+TGG - chr8_3:61342754-61342773 Msa1299960:intron 35.0%
! TATGGTAATGCTGTCTACTT+AGG - chr8_3:61342777-61342796 Msa1299960:intron 35.0%
TAATGCTGTCTACTTAGGAA+AGG - chr8_3:61342782-61342801 Msa1299960:intron 35.0%
AAGAGCTCAATATCAAGAAG+CGG + chr8_3:61342930-61342949 None:intergenic 35.0%
GATATTGAGCTCTTCAAATC+TGG - chr8_3:61342936-61342955 Msa1299960:CDS 35.0%
GATTTATTAGGCACACACAA+TGG + chr8_3:61342969-61342988 None:intergenic 35.0%
! GTATTGGCGTACGATTTATT+AGG + chr8_3:61342981-61343000 None:intergenic 35.0%
TCTGACTCCATTGTTTCGTT+TGG + chr8_3:61336915-61336934 None:intergenic 40.0%
CAAATAGCCCTAATGCGATT+GGG + chr8_3:61337050-61337069 None:intergenic 40.0%
CAATCGCATTAGGGCTATTT+GGG - chr8_3:61337049-61337068 Msa1299960:three_prime_UTR 40.0%
AAACCACTGGCATTACTGAT+CGG - chr8_3:61337081-61337100 Msa1299960:three_prime_UTR 40.0%
! GCATTTCAGATGTGTGCTTT+TGG - chr8_3:61337199-61337218 Msa1299960:CDS 40.0%
GAAGTTTCTCACTCCAATGA+TGG + chr8_3:61337520-61337539 None:intergenic 40.0%
CAAACAGGCAGTTAAAAGAG+TGG - chr8_3:61338084-61338103 Msa1299960:intron 40.0%
AGTTAAAAGAGTGGCTAGCA+AGG - chr8_3:61338093-61338112 Msa1299960:intron 40.0%
TTGCGAGCAACATAAAGCTA+TGG - chr8_3:61338159-61338178 Msa1299960:intron 40.0%
TGCGAGCAACATAAAGCTAT+GGG - chr8_3:61338160-61338179 Msa1299960:intron 40.0%
TGTTATTCTTCTCCGTTCAC+AGG - chr8_3:61338447-61338466 Msa1299960:intron 40.0%
!! CAGGAAAGTTGATAGGATTG+AGG + chr8_3:61338643-61338662 None:intergenic 40.0%
!! TTTGGGAGGTTTTATCCATG+TGG - chr8_3:61338679-61338698 Msa1299960:intron 40.0%
TAAAAGCCATCATCACCACA+TGG + chr8_3:61338697-61338716 None:intergenic 40.0%
AACATGATTGGAGAAGGAGA+TGG - chr8_3:61338718-61338737 Msa1299960:intron 40.0%
ATAAATGTGCCATGGGAGAA+TGG - chr8_3:61338754-61338773 Msa1299960:intron 40.0%
TAAATGTGCCATGGGAGAAT+GGG - chr8_3:61338755-61338774 Msa1299960:intron 40.0%
! TACCTTGTGTTTGGGTTTGT+TGG - chr8_3:61338920-61338939 Msa1299960:intron 40.0%
AACCAACAAACCCAAACACA+AGG + chr8_3:61338925-61338944 None:intergenic 40.0%
AACAGAAGGGAATAACCAGA+TGG + chr8_3:61339020-61339039 None:intergenic 40.0%
CTTGAAGACAAGCCTCTTAT+GGG - chr8_3:61339387-61339406 Msa1299960:intron 40.0%
TTGAAGACAAGCCTCTTATG+GGG - chr8_3:61339388-61339407 Msa1299960:intron 40.0%
AAATAGTTGCCCGTAAGAGA+AGG + chr8_3:61339494-61339513 None:intergenic 40.0%
! TTCTTTTTCCTTGGGGATTG+TGG - chr8_3:61339513-61339532 Msa1299960:intron 40.0%
! TCTTTTTCCTTGGGGATTGT+GGG - chr8_3:61339514-61339533 Msa1299960:intron 40.0%
! TCTTCTTTGCCAGTTTTACG+TGG - chr8_3:61339553-61339572 Msa1299960:intron 40.0%
ACATAAGCTCCACGTAAAAC+TGG + chr8_3:61339565-61339584 None:intergenic 40.0%
GGTAATTCACAAGCAAGTGT+AGG + chr8_3:61339701-61339720 None:intergenic 40.0%
GAATCATGGAAGTCCATTAC+CGG + chr8_3:61339755-61339774 None:intergenic 40.0%
ACAGCAAGAAAAAGGGATAC+AGG + chr8_3:61340352-61340371 None:intergenic 40.0%
GAGTATGCTGTAAAGGCAAA+AGG + chr8_3:61340398-61340417 None:intergenic 40.0%
AAATGTTGCAGAGCTTCTTG+AGG - chr8_3:61340473-61340492 Msa1299960:CDS 40.0%
!! TCAACTTTGAGGTTGGAAAG+TGG + chr8_3:61340510-61340529 None:intergenic 40.0%
GTTAACCTGCATCAACTTTG+AGG + chr8_3:61340521-61340540 None:intergenic 40.0%
GTCCTCTACCAGATTAGATT+TGG - chr8_3:61340664-61340683 Msa1299960:intron 40.0%
!! GGAGACTTTTAGAAGTTCCT+AGG + chr8_3:61340812-61340831 None:intergenic 40.0%
! GGAAGGTTTTACTCTGACAA+AGG + chr8_3:61341049-61341068 None:intergenic 40.0%
TCTAGAGGGAAGAAGCAATT+TGG + chr8_3:61341070-61341089 None:intergenic 40.0%
TTTGGACCCATCTCAGAATT+AGG - chr8_3:61341127-61341146 Msa1299960:intron 40.0%
GTGAAGTGCATTGTTGAAAG+GGG + chr8_3:61341167-61341186 None:intergenic 40.0%
GAGTGAAGTGCATTGTTGAA+AGG + chr8_3:61341169-61341188 None:intergenic 40.0%
!! AATGAGGATGGTGGATAATG+AGG + chr8_3:61341234-61341253 None:intergenic 40.0%
!! AAACGGACTATTGTGCCAAA+TGG + chr8_3:61341335-61341354 None:intergenic 40.0%
!! CGAAATCCTTTGATTTGCAG+AGG - chr8_3:61341366-61341385 Msa1299960:CDS 40.0%
ATGTGAATCAACCTCGTTGA+AGG + chr8_3:61341401-61341420 None:intergenic 40.0%
! TTCAACGAGGTTGATTCACA+TGG - chr8_3:61341400-61341419 Msa1299960:CDS 40.0%
TACAATCACTTGAACCCTAG+TGG + chr8_3:61341511-61341530 None:intergenic 40.0%
CTAGGGTTCAAGTGATTGTA+TGG - chr8_3:61341511-61341530 Msa1299960:intron 40.0%
ATCTTCATCTGCATCAAGGA+TGG + chr8_3:61341590-61341609 None:intergenic 40.0%
ATTTGACAATTTGGATCGCC+AGG + chr8_3:61341629-61341648 None:intergenic 40.0%
CACGTATGGTATGCTTCTTA+TGG - chr8_3:61341652-61341671 Msa1299960:intron 40.0%
TTTGATTGCTACATAGCTGG+TGG - chr8_3:61341697-61341716 Msa1299960:intron 40.0%
! AAGCCTACCCTTTCTTTTAC+AGG + chr8_3:61341928-61341947 None:intergenic 40.0%
TTAATCCCATCGGATACAAC+AGG + chr8_3:61342034-61342053 None:intergenic 40.0%
TCCAATAAATGATTCGCAGG+TGG - chr8_3:61342205-61342224 Msa1299960:intron 40.0%
TCCACCTGCGAATCATTTAT+TGG + chr8_3:61342209-61342228 None:intergenic 40.0%
ATAAATGATTCGCAGGTGGA+AGG - chr8_3:61342209-61342228 Msa1299960:intron 40.0%
CGACCGAACAATATATGACA+AGG + chr8_3:61342302-61342321 None:intergenic 40.0%
TCGTGAATCCTCACATTCAT+GGG - chr8_3:61342319-61342338 Msa1299960:intron 40.0%
TCGTAAGTAAATCTGTCTGG+TGG - chr8_3:61342416-61342435 Msa1299960:intron 40.0%
TTTGAATGCCATCTCCAACA+AGG - chr8_3:61342597-61342616 Msa1299960:intron 40.0%
TCAGAGAGAAGTCATTACCA+AGG + chr8_3:61342735-61342754 None:intergenic 40.0%
!! TTGGTTCTAATCGCCGTATT+TGG - chr8_3:61342848-61342867 Msa1299960:CDS 40.0%
TACGCCAATACCTTGATAAG+AGG - chr8_3:61342990-61343009 Msa1299960:intron 40.0%
ACGCCAATACCTTGATAAGA+GGG - chr8_3:61342991-61343010 Msa1299960:intron 40.0%
CAACCCTCTTATCAAGGTAT+TGG + chr8_3:61342997-61343016 None:intergenic 40.0%
CAATACCTTGATAAGAGGGT+TGG - chr8_3:61342995-61343014 Msa1299960:intron 40.0%
!! TTGATAAGAGGGTTGGTAGA+GGG - chr8_3:61343002-61343021 Msa1299960:intron 40.0%
ACACTCCTCTAAATTCGGAG+CGG - chr8_3:61336792-61336811 Msa1299960:three_prime_UTR 45.0%
GCGAGAACCAAACGAAACAA+TGG - chr8_3:61336905-61336924 Msa1299960:three_prime_UTR 45.0%
! AACGCGACGTTGTTGATTAC+TGG + chr8_3:61336961-61336980 None:intergenic 45.0%
AGTAATCAACAACGTCGCGT+TGG - chr8_3:61336960-61336979 Msa1299960:three_prime_UTR 45.0%
TTGGTTTACTCTACGACGAG+AGG - chr8_3:61336979-61336998 Msa1299960:three_prime_UTR 45.0%
GATGTGTAAGCACTACGATC+CGG - chr8_3:61337001-61337020 Msa1299960:three_prime_UTR 45.0%
CTAATGCGATTGGGAGTTTC+GGG + chr8_3:61337041-61337060 None:intergenic 45.0%
CCTAATGCGATTGGGAGTTT+CGG + chr8_3:61337042-61337061 None:intergenic 45.0%
CGAAACTCCCAATCGCATTA+GGG - chr8_3:61337040-61337059 Msa1299960:three_prime_UTR 45.0%
CCAAATAGCCCTAATGCGAT+TGG + chr8_3:61337051-61337070 None:intergenic 45.0%
CCAATCGCATTAGGGCTATT+TGG - chr8_3:61337048-61337067 Msa1299960:three_prime_UTR 45.0%
GATCAGTAATGCCAGTGGTT+TGG + chr8_3:61337082-61337101 None:intergenic 45.0%
TTACCGATCAGTAATGCCAG+TGG + chr8_3:61337087-61337106 None:intergenic 45.0%
AAATCTGCCTATCTTGCTGC+TGG - chr8_3:61337371-61337390 Msa1299960:CDS 45.0%
CTGATATGTGAATCGCTGGA+TGG + chr8_3:61337585-61337604 None:intergenic 45.0%
CATCCAGCGATTCACATATC+AGG - chr8_3:61337583-61337602 Msa1299960:CDS 45.0%
GAACCTGATATGTGAATCGC+TGG + chr8_3:61337589-61337608 None:intergenic 45.0%
GAATTGTAACAATCCACGGG+AGG + chr8_3:61337814-61337833 None:intergenic 45.0%
TCCTTCCTGACTACGTAGTA+AGG - chr8_3:61337859-61337878 Msa1299960:CDS 45.0%
ACCTTACTACGTAGTCAGGA+AGG + chr8_3:61337863-61337882 None:intergenic 45.0%
ACTCACCTTACTACGTAGTC+AGG + chr8_3:61337867-61337886 None:intergenic 45.0%
!! TGCTGACTTGTGATGTGGAA+AGG - chr8_3:61337906-61337925 Msa1299960:CDS 45.0%
TGTGAATGACAGCCAGAACT+TGG - chr8_3:61338344-61338363 Msa1299960:intron 45.0%
TGGGACGTTCATCATGGAAA+CGG - chr8_3:61338392-61338411 Msa1299960:intron 45.0%
CATACAGGCATGAATTTGGG+AGG - chr8_3:61338665-61338684 Msa1299960:intron 45.0%
ATGCAGACTATTTAGCAGCG+TGG - chr8_3:61338788-61338807 Msa1299960:intron 45.0%
TGCAGACTATTTAGCAGCGT+GGG - chr8_3:61338789-61338808 Msa1299960:intron 45.0%
GTTTCTGCTGGATTTGATGC+TGG - chr8_3:61338862-61338881 Msa1299960:intron 45.0%
GCTGGATTTGATGCTGGTAA+TGG - chr8_3:61338868-61338887 Msa1299960:intron 45.0%
TGATGCAACATCCACCCAAA+GGG + chr8_3:61338995-61339014 None:intergenic 45.0%
TGCTGAAGGTAGGATTGTAC+TGG - chr8_3:61339299-61339318 Msa1299960:intron 45.0%
GCTTGAAGACAAGCCTCTTA+TGG - chr8_3:61339386-61339405 Msa1299960:intron 45.0%
CCATGTAGACTCAAATGGAC+GGG + chr8_3:61339424-61339443 None:intergenic 45.0%
GCCATGTAGACTCAAATGGA+CGG + chr8_3:61339425-61339444 None:intergenic 45.0%
ACACGCCATGTAGACTCAAA+TGG + chr8_3:61339429-61339448 None:intergenic 45.0%
! AGGTGGGATGCATATTTTGC+AGG - chr8_3:61339649-61339668 Msa1299960:intron 45.0%
AAAAGGGACTTAACTCCTCG+CGG + chr8_3:61339676-61339695 None:intergenic 45.0%
CAAGCAAGTGTAGGCCAAAA+GGG + chr8_3:61339692-61339711 None:intergenic 45.0%
ACAAGCAAGTGTAGGCCAAA+AGG + chr8_3:61339693-61339712 None:intergenic 45.0%
! ACACAAGTTGAAGTAGACCC+CGG - chr8_3:61340056-61340075 Msa1299960:intron 45.0%
!! TCCAACCTCAAAGTTGATGC+AGG - chr8_3:61340513-61340532 Msa1299960:intron 45.0%
!! ACCTGCATCAACTTTGAGGT+TGG + chr8_3:61340517-61340536 None:intergenic 45.0%
TTATACTGGTGGCCATCAGT+GGG - chr8_3:61340625-61340644 Msa1299960:intron 45.0%
CCACATGACAGCTAAGTGAA+AGG + chr8_3:61340886-61340905 None:intergenic 45.0%
CCTTTCACTTAGCTGTCATG+TGG - chr8_3:61340883-61340902 Msa1299960:CDS 45.0%
TCACTTAGCTGTCATGTGGT+TGG - chr8_3:61340887-61340906 Msa1299960:CDS 45.0%
CACTTAGCTGTCATGTGGTT+GGG - chr8_3:61340888-61340907 Msa1299960:intron 45.0%
AAAATTACCCAGGGCGATTG+AGG + chr8_3:61340995-61341014 None:intergenic 45.0%
GAGGGAAGAAGCAATTTGGA+AGG + chr8_3:61341066-61341085 None:intergenic 45.0%
!! CTAGGGCCTAATTCTGAGAT+GGG + chr8_3:61341136-61341155 None:intergenic 45.0%
TGAAAGGGGATAGGAACCTA+GGG + chr8_3:61341153-61341172 None:intergenic 45.0%
TTGAAAGGGGATAGGAACCT+AGG + chr8_3:61341154-61341173 None:intergenic 45.0%
GTGCATTGTTGAAAGGGGAT+AGG + chr8_3:61341162-61341181 None:intergenic 45.0%
CAGTTGCCTCTGCAAATCAA+AGG + chr8_3:61341375-61341394 None:intergenic 45.0%
! TTAGCTTGATGGACCGTTTG+TGG - chr8_3:61341471-61341490 Msa1299960:CDS 45.0%
! TAGCTTGATGGACCGTTTGT+GGG - chr8_3:61341472-61341491 Msa1299960:CDS 45.0%
CATGACCTATACCCCACAAA+CGG + chr8_3:61341487-61341506 None:intergenic 45.0%
GGTATAGGTCATGTCCACTA+GGG - chr8_3:61341494-61341513 Msa1299960:CDS 45.0%
CAGGATCTTCATCTGCATCA+AGG + chr8_3:61341594-61341613 None:intergenic 45.0%
CAATTTGGATCGCCAGGAAT+GGG + chr8_3:61341623-61341642 None:intergenic 45.0%
ACAATTTGGATCGCCAGGAA+TGG + chr8_3:61341624-61341643 None:intergenic 45.0%
CTGCCTGTAAAAGAAAGGGT+AGG - chr8_3:61341922-61341941 Msa1299960:intron 45.0%
AGTGATCCTGTTGTATCCGA+TGG - chr8_3:61342025-61342044 Msa1299960:CDS 45.0%
GTGATCCTGTTGTATCCGAT+GGG - chr8_3:61342026-61342045 Msa1299960:CDS 45.0%
! CTCTTCCAGATGAGGTCTTT+TGG - chr8_3:61342267-61342286 Msa1299960:intron 45.0%
GTCTTCCAAAAGACCTCATC+TGG + chr8_3:61342275-61342294 None:intergenic 45.0%
GTCGTGAATCCTCACATTCA+TGG - chr8_3:61342318-61342337 Msa1299960:intron 45.0%
CGTGAATCCTCACATTCATG+GGG - chr8_3:61342320-61342339 Msa1299960:intron 45.0%
TTAAGAAACGCAACACCTCC+AGG + chr8_3:61342347-61342366 None:intergenic 45.0%
ACCAAACTCCTTGTTGGAGA+TGG + chr8_3:61342608-61342627 None:intergenic 45.0%
CTGAGAACCAAACTCCTTGT+TGG + chr8_3:61342614-61342633 None:intergenic 45.0%
!! CAACAAGGAGTTTGGTTCTC+AGG - chr8_3:61342612-61342631 Msa1299960:intron 45.0%
AGTGCAACTATCTTCCTCCT+TGG - chr8_3:61342715-61342734 Msa1299960:intron 45.0%
GAGAGAAGTCATTACCAAGG+AGG + chr8_3:61342732-61342751 None:intergenic 45.0%
! GTTGTGCAGAATGGTTGGTA+TGG - chr8_3:61342759-61342778 Msa1299960:intron 45.0%
AATATCAAGAAGCGGACACC+TGG + chr8_3:61342922-61342941 None:intergenic 45.0%
CTCTACCAACCCTCTTATCA+AGG + chr8_3:61343003-61343022 None:intergenic 45.0%
!! CTTGATAAGAGGGTTGGTAG+AGG - chr8_3:61343001-61343020 Msa1299960:intron 45.0%
AGCAGCGTCTATGTAAGCAA+TGG + chr8_3:61343051-61343070 None:intergenic 45.0%
! CGAAGCACTAGAATAAGGTC+TGG + chr8_3:61343143-61343162 None:intergenic 45.0%
! AGCGTCGAAGCACTAGAATA+AGG + chr8_3:61343148-61343167 None:intergenic 45.0%
ATTGACATTTGGTCGGTGAC+TGG - chr8_3:61343301-61343320 Msa1299960:five_prime_UTR 45.0%
!!! TATATAAAATTTAAAATTTG+AGG - chr8_3:61340550-61340569 Msa1299960:intron 5.0%
TCCTCTAAATTCGGAGCGGA+AGG - chr8_3:61336796-61336815 Msa1299960:three_prime_UTR 50.0%
CCTCTAAATTCGGAGCGGAA+GGG - chr8_3:61336797-61336816 Msa1299960:three_prime_UTR 50.0%
TAAATTCGGAGCGGAAGGGA+GGG - chr8_3:61336801-61336820 Msa1299960:three_prime_UTR 50.0%
CCGAAACTCCCAATCGCATT+AGG - chr8_3:61337039-61337058 Msa1299960:three_prime_UTR 50.0%
! GTTGCTATTGTTAGGCCTCC+AGG - chr8_3:61338130-61338149 Msa1299960:intron 50.0%
TGTTGCTCGCAATGATGACC+TGG + chr8_3:61338151-61338170 None:intergenic 50.0%
GTTGACTGGGACGTTCATCA+TGG - chr8_3:61338386-61338405 Msa1299960:intron 50.0%
ATTGGAGAAGGAGATGGTGC+TGG - chr8_3:61338724-61338743 Msa1299960:intron 50.0%
AACAGCTGTTGGAGACCCTT+TGG - chr8_3:61338977-61338996 Msa1299960:intron 50.0%
ACAGCTGTTGGAGACCCTTT+GGG - chr8_3:61338978-61338997 Msa1299960:intron 50.0%
GTGATGCAACATCCACCCAA+AGG + chr8_3:61338996-61339015 None:intergenic 50.0%
GGATGTTGCATCACACCATC+TGG - chr8_3:61339002-61339021 Msa1299960:intron 50.0%
CCCGTCCATTTGAGTCTACA+TGG - chr8_3:61339421-61339440 Msa1299960:intron 50.0%
TACATGGCGTGTGATCCAAG+CGG - chr8_3:61339437-61339456 Msa1299960:intron 50.0%
ATCCAAGCGGTAACAAGACG+TGG - chr8_3:61339450-61339469 Msa1299960:intron 50.0%
! TTTTCCTTGGGGATTGTGGG+TGG - chr8_3:61339517-61339536 Msa1299960:intron 50.0%
TTTCCTTGGGGATTGTGGGT+GGG - chr8_3:61339518-61339537 Msa1299960:intron 50.0%
! GCGAGGAGTTAAGTCCCTTT+TGG - chr8_3:61339675-61339694 Msa1299960:CDS 50.0%
TCATGGAAGTCCATTACCGG+AGG + chr8_3:61339752-61339771 None:intergenic 50.0%
! CACAAGTTGAAGTAGACCCC+GGG - chr8_3:61340057-61340076 Msa1299960:intron 50.0%
!! AAGCTCTGAGTCTGAGACTG+AGG - chr8_3:61340425-61340444 Msa1299960:intron 50.0%
! GTCTGAGACTGAGGATGACA+AGG - chr8_3:61340434-61340453 Msa1299960:intron 50.0%
CACTGATGGCCACCAGTATA+AGG + chr8_3:61340626-61340645 None:intergenic 50.0%
CTTATACTGGTGGCCATCAG+TGG - chr8_3:61340624-61340643 Msa1299960:intron 50.0%
TATACTGGTGGCCATCAGTG+GGG - chr8_3:61340626-61340645 Msa1299960:intron 50.0%
! TCCAAGTTGGCTAGAACCTC+CGG - chr8_3:61340933-61340952 Msa1299960:intron 50.0%
TTACTCGTGGGCAAGGAAAG+AGG - chr8_3:61340958-61340977 Msa1299960:intron 50.0%
GATAACTCCTCAATCGCCCT+GGG - chr8_3:61340985-61341004 Msa1299960:intron 50.0%
! AGTGCTGGACACCATTTGGA+AGG + chr8_3:61341098-61341117 None:intergenic 50.0%
TCCAAATGGTGTCCAGCACT+TGG - chr8_3:61341098-61341117 Msa1299960:intron 50.0%
!! ACCAAGTGCTGGACACCATT+TGG + chr8_3:61341102-61341121 None:intergenic 50.0%
TCCAGCACTTGGTCACAGTT+TGG - chr8_3:61341109-61341128 Msa1299960:intron 50.0%
TCCAAACTGTGACCAAGTGC+TGG + chr8_3:61341113-61341132 None:intergenic 50.0%
! CCTAGGGCCTAATTCTGAGA+TGG + chr8_3:61341137-61341156 None:intergenic 50.0%
CCATCTCAGAATTAGGCCCT+AGG - chr8_3:61341134-61341153 Msa1299960:intron 50.0%
!! GTGGTGGATAATGAGGATGG+TGG + chr8_3:61341243-61341262 None:intergenic 50.0%
!! CTGGTGGTGGATAATGAGGA+TGG + chr8_3:61341246-61341265 None:intergenic 50.0%
TCCTCATTATCCACCACCAG+AGG - chr8_3:61341246-61341265 Msa1299960:intron 50.0%
ATTACTCTACGACCAGCCTC+TGG + chr8_3:61341265-61341284 None:intergenic 50.0%
! AGCTTGATGGACCGTTTGTG+GGG - chr8_3:61341473-61341492 Msa1299960:CDS 50.0%
ATGGACCGTTTGTGGGGTAT+AGG - chr8_3:61341479-61341498 Msa1299960:CDS 50.0%
GGGTATAGGTCATGTCCACT+AGG - chr8_3:61341493-61341512 Msa1299960:CDS 50.0%
ATCCTGATGCTTCCCATTCC+TGG - chr8_3:61341608-61341627 Msa1299960:intron 50.0%
! TTGCTACATAGCTGGTGGAC+AGG - chr8_3:61341702-61341721 Msa1299960:intron 50.0%
! TCGGGATCCTTGTTTGTTGC+AGG - chr8_3:61342494-61342513 Msa1299960:intron 50.0%
GCTCTAGCCTGCAACAAACA+AGG + chr8_3:61342504-61342523 None:intergenic 50.0%
GCCATCTCCAACAAGGAGTT+TGG - chr8_3:61342604-61342623 Msa1299960:intron 50.0%
!! CAAGGAGTTTGGTTCTCAGG+AGG - chr8_3:61342615-61342634 Msa1299960:intron 50.0%
CCCTTCCGCTCCGAATTTAG+AGG + chr8_3:61336800-61336819 None:intergenic 55.0%
CTAAATTCGGAGCGGAAGGG+AGG - chr8_3:61336800-61336819 Msa1299960:three_prime_UTR 55.0%
TGCGATTGGGAGTTTCGGGA+TGG + chr8_3:61337037-61337056 None:intergenic 55.0%
TGGGACAAGCTCCAAACCAC+TGG - chr8_3:61337068-61337087 Msa1299960:three_prime_UTR 55.0%
AGCACTGCCAGCAGCAAGAT+AGG + chr8_3:61337381-61337400 None:intergenic 55.0%
TGCTGCTGGCAGTGCTTTAG+AGG - chr8_3:61337385-61337404 Msa1299960:CDS 55.0%
TGCTCGCAATGATGACCTGG+AGG + chr8_3:61338148-61338167 None:intergenic 55.0%
AGTCTAGCGGCCAACTCGAT+TGG + chr8_3:61338544-61338563 None:intergenic 55.0%
CCACATCTCCCATTCTCCCA+TGG + chr8_3:61338766-61338785 None:intergenic 55.0%
CCATGGGAGAATGGGAGATG+TGG - chr8_3:61338763-61338782 Msa1299960:intron 55.0%
TGGCTACAGGGAGCAAGATG+TGG + chr8_3:61338816-61338835 None:intergenic 55.0%
GCCTCTTATGGGGTCTTCAG+AGG - chr8_3:61339398-61339417 Msa1299960:intron 55.0%
! GCCTCTGAAGACCCCATAAG+AGG + chr8_3:61339402-61339421 None:intergenic 55.0%
! TGCCACGTCTTGTTACCGCT+TGG + chr8_3:61339455-61339474 None:intergenic 55.0%
TTCCTTGGGGATTGTGGGTG+GGG - chr8_3:61339519-61339538 Msa1299960:intron 55.0%
! GCATATTTTGCAGGTCCGCG+AGG - chr8_3:61339658-61339677 Msa1299960:intron 55.0%
TGGAAGTCCATTACCGGAGG+TGG + chr8_3:61339749-61339768 None:intergenic 55.0%
CTAGTCTCACACCCCACTGA+TGG + chr8_3:61340640-61340659 None:intergenic 55.0%
CATCAGTGGGGTGTGAGACT+AGG - chr8_3:61340638-61340657 Msa1299960:intron 55.0%
AGTGGGGTGTGAGACTAGGT+TGG - chr8_3:61340642-61340661 Msa1299960:intron 55.0%
CTTGGAAGAGAGACCAGCGA+TGG + chr8_3:61340919-61340938 None:intergenic 55.0%
! CGCTGGTCTCTCTTCCAAGT+TGG - chr8_3:61340920-61340939 Msa1299960:intron 55.0%
! ACCGGAGGTTCTAGCCAACT+TGG + chr8_3:61340937-61340956 None:intergenic 55.0%
AGAACCTCCGGTCTTACTCG+TGG - chr8_3:61340945-61340964 Msa1299960:intron 55.0%
GAACCTCCGGTCTTACTCGT+GGG - chr8_3:61340946-61340965 Msa1299960:intron 55.0%
TCCTTGCCCACGAGTAAGAC+CGG + chr8_3:61340955-61340974 None:intergenic 55.0%
CGTGGGCAAGGAAAGAGGTA+TGG - chr8_3:61340963-61340982 Msa1299960:intron 55.0%
GGATAACTCCTCAATCGCCC+TGG - chr8_3:61340984-61341003 Msa1299960:intron 55.0%
!! GCCTCTGGTGGTGGATAATG+AGG + chr8_3:61341250-61341269 None:intergenic 55.0%
CATTATCCACCACCAGAGGC+TGG - chr8_3:61341250-61341269 Msa1299960:intron 55.0%
!! GACTTTCCTCGGGTGCCATT+TGG - chr8_3:61341317-61341336 Msa1299960:CDS 55.0%
ATTGTGCCAAATGGCACCCG+AGG + chr8_3:61341326-61341345 None:intergenic 55.0%
GGCAACTGTTGCCTTCAACG+AGG - chr8_3:61341387-61341406 Msa1299960:CDS 55.0%
GGTATGCAGAAGTCGTGCTC+TGG - chr8_3:61342230-61342249 Msa1299960:intron 55.0%
TCCTCACATTCATGGGGTCC+TGG - chr8_3:61342326-61342345 Msa1299960:intron 55.0%
TCCAGGACCCCATGAATGTG+AGG + chr8_3:61342330-61342349 None:intergenic 55.0%
TCACATTCATGGGGTCCTGG+AGG - chr8_3:61342329-61342348 Msa1299960:intron 55.0%
AGAGGGAGAACAGCTCTCAG+AGG - chr8_3:61343019-61343038 Msa1299960:intron 55.0%
TCGGGATGGCGATCGTCATC+CGG + chr8_3:61337023-61337042 None:intergenic 60.0%
GCTGTTGGAGACCCTTTGGG+TGG - chr8_3:61338981-61339000 Msa1299960:intron 60.0%
TACCCCACCCACAATCCCCA+AGG + chr8_3:61339524-61339543 None:intergenic 60.0%
TTGTCCAGTGGCACCACCTC+CGG - chr8_3:61339733-61339752 Msa1299960:CDS 60.0%
!! ATTACCGGAGGTGGTGCCAC+TGG + chr8_3:61339740-61339759 None:intergenic 60.0%
AGTGGCACCACCTCCGGTAA+TGG - chr8_3:61339739-61339758 Msa1299960:CDS 60.0%
TGGTTGGGAGTGACCATCGC+TGG - chr8_3:61340903-61340922 Msa1299960:intron 60.0%
TTGCCCACGAGTAAGACCGG+AGG + chr8_3:61340952-61340971 None:intergenic 60.0%
TCCGGTCTTACTCGTGGGCA+AGG - chr8_3:61340951-61340970 Msa1299960:intron 60.0%
ACTCTACGACCAGCCTCTGG+TGG + chr8_3:61341262-61341281 None:intergenic 60.0%
!! CGCCAGGAATGGGAAGCATC+AGG + chr8_3:61341613-61341632 None:intergenic 60.0%
CTACGACCAGCCTCTGGTGG+TGG + chr8_3:61341259-61341278 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 61336780 61343414 61336780 ID=Msa1299960;Name=Msa1299960
chr8_3 mRNA 61336780 61343414 61336780 ID=Msa1299960-mRNA-1;Parent=Msa1299960;Name=Msa1299960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=144|1|1|1|0.84|0.92|14|329|655
chr8_3 exon 61336780 61337271 61336780 ID=Msa1299960-mRNA-1:exon:18088;Parent=Msa1299960-mRNA-1
chr8_3 exon 61337362 61337426 61337362 ID=Msa1299960-mRNA-1:exon:18087;Parent=Msa1299960-mRNA-1
chr8_3 exon 61337549 61337678 61337549 ID=Msa1299960-mRNA-1:exon:18086;Parent=Msa1299960-mRNA-1
chr8_3 exon 61337777 61337970 61337777 ID=Msa1299960-mRNA-1:exon:18085;Parent=Msa1299960-mRNA-1
chr8_3 exon 61338471 61338592 61338471 ID=Msa1299960-mRNA-1:exon:18084;Parent=Msa1299960-mRNA-1
chr8_3 exon 61339660 61339783 61339660 ID=Msa1299960-mRNA-1:exon:18083;Parent=Msa1299960-mRNA-1
chr8_3 exon 61340440 61340523 61340440 ID=Msa1299960-mRNA-1:exon:18082;Parent=Msa1299960-mRNA-1
chr8_3 exon 61340736 61340906 61340736 ID=Msa1299960-mRNA-1:exon:18081;Parent=Msa1299960-mRNA-1
chr8_3 exon 61341148 61341212 61341148 ID=Msa1299960-mRNA-1:exon:18080;Parent=Msa1299960-mRNA-1
chr8_3 exon 61341311 61341522 61341311 ID=Msa1299960-mRNA-1:exon:18079;Parent=Msa1299960-mRNA-1
chr8_3 exon 61341726 61341838 61341726 ID=Msa1299960-mRNA-1:exon:18078;Parent=Msa1299960-mRNA-1
chr8_3 exon 61341957 61342103 61341957 ID=Msa1299960-mRNA-1:exon:18077;Parent=Msa1299960-mRNA-1
chr8_3 exon 61342788 61342986 61342788 ID=Msa1299960-mRNA-1:exon:18076;Parent=Msa1299960-mRNA-1
chr8_3 exon 61343092 61343414 61343092 ID=Msa1299960-mRNA-1:exon:18075;Parent=Msa1299960-mRNA-1
chr8_3 five_prime_UTR 61343271 61343414 61343271 ID=Msa1299960-mRNA-1:five_prime_utr;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61343092 61343270 61343092 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61342788 61342986 61342788 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61341957 61342103 61341957 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61341726 61341838 61341726 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61341311 61341522 61341311 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61341148 61341212 61341148 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61340736 61340906 61340736 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61340440 61340523 61340440 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61339660 61339783 61339660 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61338471 61338592 61338471 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61337777 61337970 61337777 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61337549 61337678 61337549 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61337362 61337426 61337362 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 CDS 61337109 61337271 61337109 ID=Msa1299960-mRNA-1:cds;Parent=Msa1299960-mRNA-1
chr8_3 three_prime_UTR 61336780 61337108 61336780 ID=Msa1299960-mRNA-1:three_prime_utr;Parent=Msa1299960-mRNA-1
Gene Sequence

>Msa1299960

ATGGAGTCAGAAATCGACGAGACTATAACCAAAACCAGTAATCAACAACGTCGCGTTGGTTTACTCTACGACGAGAGGATGTGTAAGCACTACGATCCGGATGACGATCGCCATCCCGAAACTCCCAATCGCATTAGGGCTATTTGGGACAAGCTCCAAACCACTGGCATTACTGATCGATGTGTGCTTTTGGACGCTAAAGAAGCTGAAGACAAACATTTACTAGCGGTCCATACCAAAAATCATGTTAATCTGATTAAGAATATAAGCTATAAGAGTTATAATACAAGGTCTAATGCTGCTGCCAAACTTAATTCTATATATTTCAACGAAGGTTCAACAAAATCTGCCTATCTTGCTGCTGGCAGTGCTTTAGAGGCAGTTAAAAGAGTGGCTAGCAAGGAATTACAATCTGCTGTTGCTATTGTTAGGCCTCCAGGTCATCATTGCGAGCAACATAAAGCTATGGGATTTTGTCTATTCAACAACGTGGCAGTTGCTGCATCGTATCTCTTAAATGATAGTCCAGAACTTGGTGTAAAGAAAATTTTAATTGTTGACTGGGACGTTCATCATGGAAACGGTACTCAAAAAGTGTTTTGGAATGATTCTCGAGTGTTATTCTTCTCCGTTCACAGGCATGAATTTGGGAGGTTTTATCCATGTGGTGATGATGGCTTTTATAACATGATTGGAGAAGGAGATGGTGCTGGATACAATATAAATGTGCCATGGGAGAATGGGAGATGTGGTGATGCAGACTATTTAGCAGCGTGGGACCACATCTTGCTCCCTGTAGCCAAAGAATTTAATCCAGACATAATTATAGTTTCTGCTGGATTTGATGCTGCTGTTGGAGACCCTTTGGGTGGATGTTGCATCACACCATCTGGTTATTCCCTTCTGTTGAAAAAGTTGATGAATTTTGCTGAAGGTAGGATTGTACTGGTTTTAGAAGGTGGCTATAATCTTGACTCAATTGCAAAATCAATGCATGCTTGTGTGGAAGTTTTGCTTGAAGACAAGCCTCTTATGGGGTCTTCAGAGGCCCGTCCATTTGAGTCTACATGGCGTGTGATCCAAGCGGTCCGCGAGGAGTTAAGTCCCTTTTGGCCTACACTTGCTTGTGAATTACCACAAAATATAATTTGTCCAGTGGCACCACCTCCGCATACTCTATTGTCAAGCTCTGAGTCTGAGACTGAGGATGACAAGGCTCCATCAAAATTAGAAAATGTTGCAGAGCTTCTTGAGGATGTCATCAAACCACTTTCCAACCTCAAAGTTGATGCAGATGAAGATCCTGATGCTTCCCATTCCTGGCGATCCAAATTGTCAAATGTTCACGTATGGTATGCTTCTTATGGCTCAAATATGTGGAGACCAAGATTTGATTGCTACATAGCTGGTGGACAGGTGGAAGGTATGCAGAAGTCGTGCTCTGGTTCAATGAATAAAACTCTTCCAGATGAGGTCTTTTGGAAGACTTTCCCTTGTCATATATTGTTCGGTCGTGAATCCTCACATTCATGGGGTCCTGGAGGTGTTGCGTTTCTTAATCCTGAGAAAAATTCTCAGCACAAGACCTACATGTGCATGTACAAAATTTCGCTAGAGCAGTTCAACGATGTTTTATTTCAGGAAAATGGTCTAAGCCTTGATGTAGACTCTGCTTTATTTGATATGGCTACTTTGAATGCCATCTCCAACAAGGAGTTTGGTTCTCAGGAGGTTCTCAAAAATGGTTGGTATGGTAATGCTGTCTACTTAGGAAAGGAGCAAAACATTCCCATAATTACTATGACGTGTCCGCTTCTTGATATTGAGCTCTTCAAATCTGGGAAGCTACCATTGTGTGTGCCTAATAAATCGTACGCCAATACCTTGATAAGAGGGTTGGTAGAGGGAGAACAGCTCTCAGAGGCTGAAGCCATTGCTTACATAGACGCTGCTGCTAAAGCATTATGA

Protein sequence

>Msa1299960

MESEIDETITKTSNQQRRVGLLYDERMCKHYDPDDDRHPETPNRIRAIWDKLQTTGITDRCVLLDAKEAEDKHLLAVHTKNHVNLIKNISYKSYNTRSNAAAKLNSIYFNEGSTKSAYLAAGSALEAVKRVASKELQSAVAIVRPPGHHCEQHKAMGFCLFNNVAVAASYLLNDSPELGVKKILIVDWDVHHGNGTQKVFWNDSRVLFFSVHRHEFGRFYPCGDDGFYNMIGEGDGAGYNINVPWENGRCGDADYLAAWDHILLPVAKEFNPDIIIVSAGFDAAVGDPLGGCCITPSGYSLLLKKLMNFAEGRIVLVLEGGYNLDSIAKSMHACVEVLLEDKPLMGSSEARPFESTWRVIQAVREELSPFWPTLACELPQNIICPVAPPPHTLLSSSESETEDDKAPSKLENVAELLEDVIKPLSNLKVDADEDPDASHSWRSKLSNVHVWYASYGSNMWRPRFDCYIAGGQVEGMQKSCSGSMNKTLPDEVFWKTFPCHILFGRESSHSWGPGGVAFLNPEKNSQHKTYMCMYKISLEQFNDVLFQENGLSLDVDSALFDMATLNAISNKEFGSQEVLKNGWYGNAVYLGKEQNIPIITMTCPLLDIELFKSGKLPLCVPNKSYANTLIRGLVEGEQLSEAEAIAYIDAAAKAL*