Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077400 | AES61060.1 | 96.721 | 732 | 24 | 0 | 1 | 732 | 14 | 745 | 0.0 | 1454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077400 | sp|Q66GN3|NPGR2_ARATH | 51.230 | 732 | 336 | 8 | 14 | 732 | 16 | 739 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077400 | G7I4S4 | 96.721 | 732 | 24 | 0 | 1 | 732 | 14 | 745 | 0.0 | 1454 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077400 | Msa0080090 | 0.806230 | 9.101392e-50 | -8.615850e-47 |
| Msa0077400 | Msa0170030 | 0.834571 | 2.774741e-56 | -8.615850e-47 |
| Msa0077400 | Msa0204840 | 0.808634 | 2.812267e-50 | -8.615850e-47 |
| Msa0077400 | Msa0225110 | 0.805772 | 1.136171e-49 | -8.615850e-47 |
| Msa0077400 | Msa0225220 | 0.803803 | 2.928452e-49 | -8.615850e-47 |
| Msa0077400 | Msa0229590 | 0.815295 | 9.945654e-52 | -8.615850e-47 |
| Msa0077400 | Msa0266200 | 0.801619 | 8.268063e-49 | -8.615850e-47 |
| Msa0077400 | Msa0363530 | 0.807426 | 5.083513e-50 | -8.615850e-47 |
| Msa0077400 | Msa0363790 | 0.806177 | 9.337958e-50 | -8.615850e-47 |
| Msa0077400 | Msa0367870 | 0.804406 | 2.193567e-49 | -8.615850e-47 |
| Msa0077400 | Msa0386090 | 0.808628 | 2.821349e-50 | -8.615850e-47 |
| Msa0077400 | Msa0411390 | 0.810352 | 1.202885e-50 | -8.615850e-47 |
| Msa0077400 | Msa0419670 | 0.828202 | 1.024659e-54 | -8.615850e-47 |
| Msa0077400 | Msa0434290 | 0.822263 | 2.601313e-53 | -8.615850e-47 |
| Msa0077400 | Msa0440440 | 0.805812 | 1.114226e-49 | -8.615850e-47 |
| Msa0077400 | Msa0455760 | 0.813420 | 2.583435e-51 | -8.615850e-47 |
| Msa0077400 | Msa0486690 | 0.800559 | 1.361660e-48 | -8.615850e-47 |
| Msa0077400 | Msa0506860 | 0.822937 | 1.812747e-53 | -8.615850e-47 |
| Msa0077400 | Msa0528950 | 0.938461 | 6.479092e-99 | -8.615850e-47 |
| Msa0077400 | Msa0534880 | 0.826912 | 2.091190e-54 | -8.615850e-47 |
| Msa0077400 | Msa0625190 | 0.809741 | 1.628890e-50 | -8.615850e-47 |
| Msa0077400 | Msa0631330 | 0.815944 | 7.129305e-52 | -8.615850e-47 |
| Msa0077400 | Msa0661650 | 0.816501 | 5.352543e-52 | -8.615850e-47 |
| Msa0077400 | Msa0681250 | 0.804973 | 1.670536e-49 | -8.615850e-47 |
| Msa0077400 | Msa0745610 | 0.823234 | 1.546022e-53 | -8.615850e-47 |
| Msa0077400 | Msa0901400 | 0.800907 | 1.156029e-48 | -8.615850e-47 |
| Msa0077400 | Msa0926890 | 0.800354 | 1.498987e-48 | -8.615850e-47 |
| Msa0077400 | Msa0927090 | 0.805322 | 1.411471e-49 | -8.615850e-47 |
| Msa0077400 | Msa0927310 | 0.830880 | 2.288994e-55 | -8.615850e-47 |
| Msa0077400 | Msa0936530 | 0.806311 | 8.747958e-50 | -8.615850e-47 |
| Msa0077400 | Msa0958080 | 0.811137 | 8.137662e-51 | -8.615850e-47 |
| Msa0077400 | Msa0961360 | 0.810782 | 9.710830e-51 | -8.615850e-47 |
| Msa0077400 | Msa0965610 | 0.829109 | 6.187172e-55 | -8.615850e-47 |
| Msa0077400 | Msa0992640 | 0.823428 | 1.392344e-53 | -8.615850e-47 |
| Msa0077400 | Msa0992680 | 0.835414 | 1.701223e-56 | -8.615850e-47 |
| Msa0077400 | Msa0999290 | 0.831334 | 1.770443e-55 | -8.615850e-47 |
| Msa0077400 | Msa1019000 | 0.829547 | 4.843413e-55 | -8.615850e-47 |
| Msa0077400 | Msa1019150 | 0.834118 | 3.605935e-56 | -8.615850e-47 |
| Msa0077400 | Msa1037780 | 0.804265 | 2.347085e-49 | -8.615850e-47 |
| Msa0077400 | Msa1066670 | 0.827145 | 1.839244e-54 | -8.615850e-47 |
| Msa0077400 | Msa1122520 | 0.805170 | 1.519373e-49 | -8.615850e-47 |
| Msa0077400 | Msa1147740 | 0.858092 | 1.044008e-62 | -8.615850e-47 |
| Msa0077400 | Msa1155170 | -0.800391 | 1.473472e-48 | -8.615850e-47 |
| Msa0077400 | Msa1238820 | 0.803847 | 2.866905e-49 | -8.615850e-47 |
| Msa0077400 | Msa1277150 | 0.801316 | 9.536039e-49 | -8.615850e-47 |
| Msa0077400 | Msa1325060 | 0.843196 | 1.625541e-58 | -8.615850e-47 |
| Msa0077400 | Msa1382680 | 0.809192 | 2.136139e-50 | -8.615850e-47 |
| Msa0077400 | Msa1389200 | 0.810135 | 1.339714e-50 | -8.615850e-47 |
| Msa0077400 | Msa1392240 | 0.801863 | 7.368099e-49 | -8.615850e-47 |
| Msa0077400 | Msa1397740 | 0.828252 | 9.967414e-55 | -8.615850e-47 |
| Msa0077400 | Msa1428070 | 0.814288 | 1.662840e-51 | -8.615850e-47 |
| Msa0077400 | Msa1440560 | 0.821419 | 4.078090e-53 | -8.615850e-47 |
| Msa0077400 | Msa1453320 | 0.803322 | 3.684058e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077400 | MtrunA17_Chr1g0187271 | 96.721 | 732 | 24 | 0 | 1 | 732 | 1 | 732 | 0.0 | 1452 |
| Msa0077400 | MtrunA17_Chr1g0183461 | 58.865 | 705 | 277 | 6 | 35 | 732 | 15 | 713 | 0.0 | 801 |
| Msa0077400 | MtrunA17_Chr7g0261581 | 56.061 | 726 | 303 | 7 | 16 | 732 | 10 | 728 | 0.0 | 771 |
| Msa0077400 | MtrunA17_Chr1g0152501 | 41.967 | 722 | 397 | 9 | 24 | 731 | 3 | 716 | 8.60e-175 | 518 |
| Msa0077400 | MtrunA17_Chr5g0409291 | 45.025 | 593 | 310 | 7 | 41 | 627 | 8 | 590 | 2.70e-165 | 489 |
| Msa0077400 | MtrunA17_Chr8g0369551 | 43.939 | 594 | 315 | 8 | 41 | 627 | 3 | 585 | 2.82e-162 | 482 |
| Msa0077400 | MtrunA17_Chr5g0409281 | 44.340 | 106 | 53 | 2 | 628 | 731 | 9 | 110 | 2.02e-22 | 92.8 |
| Msa0077400 | MtrunA17_Chr8g0369541 | 40.517 | 116 | 62 | 3 | 618 | 731 | 11 | 121 | 5.57e-20 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0077400 | AT4G28600.1 | 51.230 | 732 | 336 | 8 | 14 | 732 | 16 | 739 | 0.0 | 689 |
| Msa0077400 | AT4G28600.2 | 51.230 | 732 | 336 | 8 | 14 | 732 | 16 | 739 | 0.0 | 689 |
| Msa0077400 | AT4G28600.3 | 50.882 | 737 | 336 | 9 | 14 | 732 | 16 | 744 | 0.0 | 685 |
| Msa0077400 | AT2G43040.2 | 44.477 | 688 | 364 | 9 | 52 | 731 | 23 | 700 | 0.0 | 545 |
| Msa0077400 | AT2G43040.1 | 44.477 | 688 | 364 | 9 | 52 | 731 | 23 | 700 | 0.0 | 545 |
| Msa0077400 | AT1G27460.3 | 39.777 | 719 | 390 | 12 | 24 | 731 | 3 | 689 | 8.45e-156 | 468 |
| Msa0077400 | AT1G27460.1 | 39.917 | 719 | 393 | 12 | 24 | 731 | 3 | 693 | 1.38e-155 | 468 |
| Msa0077400 | AT1G27460.2 | 39.892 | 554 | 305 | 8 | 24 | 566 | 3 | 539 | 8.96e-120 | 370 |
Find 115 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCTCTCCATTGTTTC+TGG | 0.103677 | 1_2:+54304001 | None:intergenic |
| CTTTCTATATTGCTATTAAA+AGG | 0.121491 | 1_2:-54306010 | Msa0077400:five_prime_UTR |
| AAGATGTTATCTTATCATTT+AGG | 0.224670 | 1_2:-54304309 | Msa0077400:CDS |
| GCCTCTTCTATGTTGTTTCT+TGG | 0.226248 | 1_2:+54304148 | None:intergenic |
| TTAGCATTAGAAGGGAATTA+AGG | 0.229003 | 1_2:-54305446 | Msa0077400:CDS |
| CTTTAGATCAAAGCGGAAAA+TGG | 0.229271 | 1_2:-54303424 | Msa0077400:CDS |
| TCTTTGTGGGTGAATTTAAT+AGG | 0.234360 | 1_2:-54306166 | Msa0077400:five_prime_UTR |
| ACTTCTCTACAAAGCTGATT+TGG | 0.244443 | 1_2:-54302116 | Msa0077400:CDS |
| AGAAGAAGTTTAGCATTAGA+AGG | 0.254089 | 1_2:-54305455 | Msa0077400:CDS |
| AAATCTAGGAACTGCAAATA+AGG | 0.308744 | 1_2:-54303288 | Msa0077400:CDS |
| GATACCGACACATAATAAAA+AGG | 0.340458 | 1_2:+54302005 | None:intergenic |
| ATCAAACTTGCCACATGGTT+TGG | 0.348661 | 1_2:+54302259 | None:intergenic |
| AAAAGGTGTTATTGTCTAAA+GGG | 0.350616 | 1_2:+54302022 | None:intergenic |
| GGCTAAATCGTTGCAAACTC+TGG | 0.351732 | 1_2:-54304817 | Msa0077400:CDS |
| CTTCTCTACAAAGCTGATTT+GGG | 0.359543 | 1_2:-54302115 | Msa0077400:CDS |
| TGCAATCTAGAAGCGGAATA+AGG | 0.365185 | 1_2:+54302978 | None:intergenic |
| GCTATTGCAAATTGTTTACT+AGG | 0.372778 | 1_2:-54303746 | Msa0077400:CDS |
| ATGGTGGTGGCTGCTGTAAA+AGG | 0.375584 | 1_2:+54305944 | None:intergenic |
| GGAAAGCCTTGCTTTATCAT+TGG | 0.376906 | 1_2:-54304288 | Msa0077400:CDS |
| CATTGTTACACTTTCTTTGT+GGG | 0.378838 | 1_2:-54306179 | Msa0077400:five_prime_UTR |
| TTGTGGACTGCGTTTATTAT+CGG | 0.382742 | 1_2:+54304905 | None:intergenic |
| GAAGACTAGAAATGGAAGTT+TGG | 0.389941 | 1_2:-54303082 | Msa0077400:CDS |
| TAGGAAGCTAGAGCCTTGTT+AGG | 0.391721 | 1_2:-54305041 | Msa0077400:CDS |
| CAAACTCTGGGAAGGTTTCA+AGG | 0.404094 | 1_2:-54304804 | Msa0077400:intron |
| GGAAGACTTGAGTATCAAAA+AGG | 0.405055 | 1_2:-54305020 | Msa0077400:CDS |
| TCTTTCGCTCTGAGTGTTTG+TGG | 0.407566 | 1_2:-54304064 | Msa0077400:CDS |
| TCGCGACAGAAGACTAGAAA+TGG | 0.422836 | 1_2:-54303090 | Msa0077400:CDS |
| AGGCGAGCATATAGTTGCTT+TGG | 0.422943 | 1_2:-54303942 | Msa0077400:CDS |
| TAGAACTGCTTCCGGAGTTA+TGG | 0.430356 | 1_2:-54304351 | Msa0077400:CDS |
| GAATTCAGTATCTATAATAT+AGG | 0.437219 | 1_2:-54305920 | Msa0077400:intron |
| TCATTGTTACACTTTCTTTG+TGG | 0.437850 | 1_2:-54306180 | Msa0077400:five_prime_UTR |
| GCTGCACTTCATGTATTTGA+AGG | 0.441433 | 1_2:-54304987 | Msa0077400:CDS |
| TCATCTGCATGGTACAATCT+TGG | 0.445464 | 1_2:-54302139 | Msa0077400:CDS |
| TTTCTATATTGCTATTAAAA+GGG | 0.452062 | 1_2:-54306009 | Msa0077400:five_prime_UTR |
| CATCAGAGTCCCTTGCAACT+AGG | 0.452176 | 1_2:-54305365 | Msa0077400:CDS |
| GAAGAAGTTTAGCATTAGAA+GGG | 0.460065 | 1_2:-54305454 | Msa0077400:CDS |
| CGCAAAGAAACTGATTAAGC+TGG | 0.463190 | 1_2:-54303540 | Msa0077400:CDS |
| AATCAATAACACTAAAGTAT+AGG | 0.465135 | 1_2:+54306104 | None:intergenic |
| GCATGGAAAATGTAATCAAA+TGG | 0.470470 | 1_2:-54303771 | Msa0077400:CDS |
| AAATGCTGTAGAACTGCTTC+CGG | 0.471565 | 1_2:-54304359 | Msa0077400:CDS |
| ATCAGAGTCCCTTGCAACTA+GGG | 0.473346 | 1_2:-54305364 | Msa0077400:CDS |
| TGATAAAGTGTGTGTGTTCA+AGG | 0.476700 | 1_2:-54305419 | Msa0077400:CDS |
| TTTAGATCAAAGCGGAAAAT+GGG | 0.477721 | 1_2:-54303423 | Msa0077400:CDS |
| TATTGTCTAAAGGGTTCAAT+GGG | 0.486431 | 1_2:+54302031 | None:intergenic |
| TTATTGTCTAAAGGGTTCAA+TGG | 0.487445 | 1_2:+54302030 | None:intergenic |
| ATCAACTGCAAGAATACAAA+AGG | 0.489122 | 1_2:-54304251 | Msa0077400:CDS |
| ACAGCATGTATTGACATAGA+AGG | 0.491807 | 1_2:+54304870 | None:intergenic |
| GGTTTACTTTATGAAGCAAA+AGG | 0.492557 | 1_2:-54302331 | Msa0077400:CDS |
| ATTATAGATACTGAATTCAA+TGG | 0.493458 | 1_2:+54305925 | None:intergenic |
| AACTGCAAATAAGGTTATGA+AGG | 0.507160 | 1_2:-54303279 | Msa0077400:intron |
| AGATTTAGCAAGACAAACTT+CGG | 0.507247 | 1_2:+54303013 | None:intergenic |
| GCTCTTTGTTACTGCGGTGA+AGG | 0.509858 | 1_2:-54303962 | Msa0077400:CDS |
| CAAAGATTAAGAACAATGTA+AGG | 0.511122 | 1_2:+54303608 | None:intergenic |
| ATGTGTCGGTATCGTGTCAC+TGG | 0.518446 | 1_2:-54301995 | Msa0077400:three_prime_UTR |
| GAATCATCTCTGCGTGAAAG+TGG | 0.518712 | 1_2:-54305258 | Msa0077400:CDS |
| GCTAAATCGTTGCAAACTCT+GGG | 0.526535 | 1_2:-54304816 | Msa0077400:CDS |
| GCTTGTGTTCTGAGAAAACT+TGG | 0.530375 | 1_2:-54302229 | Msa0077400:CDS |
| AAACACTCAGAGCGAAAGAA+AGG | 0.530554 | 1_2:+54304068 | None:intergenic |
| CAAAGCGGAAAATGGGATCA+AGG | 0.534119 | 1_2:-54303416 | Msa0077400:CDS |
| GCTTTAATGCATCAGTGAGA+AGG | 0.537010 | 1_2:+54302176 | None:intergenic |
| CTCGGTATACTCAGATTGCA+TGG | 0.538524 | 1_2:-54303885 | Msa0077400:CDS |
| ATTACAACTCATAGAAGAAG+TGG | 0.541602 | 1_2:+54306059 | None:intergenic |
| GCTTCTAGATTGCACTCCAC+AGG | 0.542659 | 1_2:-54302969 | Msa0077400:intron |
| AATCTGCATTACCAGAAGGT+TGG | 0.547530 | 1_2:-54304426 | Msa0077400:CDS |
| CCACTTCGCTCTCAGTTGAA+CGG | 0.557614 | 1_2:-54304181 | Msa0077400:CDS |
| AGCTTCTGAGAAATTGATGA+AGG | 0.560809 | 1_2:-54303639 | Msa0077400:CDS |
| ATACTCAAGTCTTCCTAACA+AGG | 0.561665 | 1_2:+54305028 | None:intergenic |
| GGAATTACTTCCAGAAACAA+TGG | 0.562728 | 1_2:-54304011 | Msa0077400:CDS |
| CTGAATAGTCCCTAGTTGCA+AGG | 0.563955 | 1_2:+54305355 | None:intergenic |
| TGGCAGACACTGACACGTGT+TGG | 0.567207 | 1_2:-54301975 | Msa0077400:three_prime_UTR |
| TGATTTGGGAACATCAGCAT+TGG | 0.571232 | 1_2:-54302101 | Msa0077400:CDS |
| AGGTGAAAATGATACAAAGT+TGG | 0.571771 | 1_2:-54305304 | Msa0077400:CDS |
| GGCATCATGCCACCTTGACA+AGG | 0.578601 | 1_2:+54303034 | None:intergenic |
| GCTGTAAAAGGGAAAGAGAA+TGG | 0.579590 | 1_2:+54305956 | None:intergenic |
| GACACTAGCTCAACAAGTTG+AGG | 0.581000 | 1_2:-54304032 | Msa0077400:CDS |
| CATCTTGAGGTGAGCCTGCG+AGG | 0.583442 | 1_2:+54304326 | None:intergenic |
| AATCGTTGCAAACTCTGGGA+AGG | 0.586333 | 1_2:-54304812 | Msa0077400:CDS |
| AAGTGGTTATTTGAACTATG+AGG | 0.588319 | 1_2:-54305241 | Msa0077400:intron |
| AGTGGCTATTCATCTCGTCC+AGG | 0.589609 | 1_2:-54305324 | Msa0077400:CDS |
| TTTGTACAGCGGCTACGAAG+CGG | 0.590359 | 1_2:-54304212 | Msa0077400:CDS |
| AAACTGATTAAGCTGGAAGG+TGG | 0.590664 | 1_2:-54303533 | Msa0077400:CDS |
| AAGATTCCAATGATAAAGCA+AGG | 0.591180 | 1_2:+54304282 | None:intergenic |
| AATGATAAGATAACATCTTG+AGG | 0.602817 | 1_2:+54304313 | None:intergenic |
| TGGTGGTGGCTGCTGTAAAA+GGG | 0.604103 | 1_2:+54305945 | None:intergenic |
| TGAATAGTCCCTAGTTGCAA+GGG | 0.604887 | 1_2:+54305356 | None:intergenic |
| GTTGAATCTGCATTACCAGA+AGG | 0.604979 | 1_2:-54304430 | Msa0077400:CDS |
| CCGGAGTTATGGAACCTCGC+AGG | 0.605747 | 1_2:-54304340 | Msa0077400:CDS |
| GATACTGAATTCAATGGTGG+TGG | 0.607195 | 1_2:+54305931 | None:intergenic |
| AACAAGGTTTGTGTCGAAGA+CGG | 0.611581 | 1_2:-54303827 | Msa0077400:CDS |
| TTGATATCAAACTTGCCACA+TGG | 0.611629 | 1_2:+54302254 | None:intergenic |
| AAGGCAATTTCTCAGATGCA+TGG | 0.611767 | 1_2:-54303788 | Msa0077400:CDS |
| GACTATTCAGCATCAGCAAG+TGG | 0.612375 | 1_2:-54305342 | Msa0077400:CDS |
| GCCAAGAAACAACATAGAAG+AGG | 0.614198 | 1_2:-54304149 | Msa0077400:CDS |
| TTCAACTGAGAGCGAAGTGG+AGG | 0.614284 | 1_2:+54304184 | None:intergenic |
| CCTGCGAGGTTCCATAACTC+CGG | 0.616519 | 1_2:+54304340 | None:intergenic |
| ATGTGTACACAGCCTTGTCA+AGG | 0.617281 | 1_2:-54303046 | Msa0077400:CDS |
| GAAGGTGGGTCGAGTATTAG+CGG | 0.617728 | 1_2:-54303518 | Msa0077400:CDS |
| AACTGATTAAGCTGGAAGGT+GGG | 0.623802 | 1_2:-54303532 | Msa0077400:CDS |
| GATAAAGTGTGTGTGTTCAA+GGG | 0.624345 | 1_2:-54305418 | Msa0077400:CDS |
| ACTCTAGCTCTTTGTTACTG+CGG | 0.637326 | 1_2:-54303968 | Msa0077400:CDS |
| TGTGTTCTGAGAAAACTTGG+TGG | 0.639416 | 1_2:-54302226 | Msa0077400:CDS |
| AAGAAACTGATTAAGCTGGA+AGG | 0.640610 | 1_2:-54303536 | Msa0077400:CDS |
| TTACAACTCATAGAAGAAGT+GGG | 0.645249 | 1_2:+54306060 | None:intergenic |
| ACACAACAAACTCATCTGCA+TGG | 0.646543 | 1_2:-54302150 | Msa0077400:CDS |
| CCGTTCAACTGAGAGCGAAG+TGG | 0.647279 | 1_2:+54304181 | None:intergenic |
| GCTAAGATTCAGATTGCACA+AGG | 0.653500 | 1_2:-54303374 | Msa0077400:CDS |
| TGTGGAGTGCAATCTAGAAG+CGG | 0.658093 | 1_2:+54302971 | None:intergenic |
| ATAGATACTGAATTCAATGG+TGG | 0.660126 | 1_2:+54305928 | None:intergenic |
| TGTACACAGCCTTGTCAAGG+TGG | 0.663423 | 1_2:-54303043 | Msa0077400:CDS |
| TGACAAGGCTGTGTACACAT+TGG | 0.664584 | 1_2:+54303049 | None:intergenic |
| GAAGGCACTGAATCACGTTG+TGG | 0.672499 | 1_2:+54304888 | None:intergenic |
| GATGCTGCTTTAGATCAAAG+CGG | 0.675910 | 1_2:-54303431 | Msa0077400:CDS |
| TGATATTGAGCCAAACCATG+TGG | 0.677151 | 1_2:-54302269 | Msa0077400:CDS |
| GCGGATATAAACTACTAGCG+CGG | 0.708738 | 1_2:-54303499 | Msa0077400:CDS |
| GGTATACTCAGATTGCATGG+AGG | 0.769198 | 1_2:-54303882 | Msa0077400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTATATTGCTATTAAAA+GGG | - | chr1_2:54302060-54302079 | Msa0077400:CDS | 15.0% |
| !! | ATTAACTAACTCATAAAATT+TGG | + | chr1_2:54302264-54302283 | None:intergenic | 15.0% |
| !!! | ATTTTATGAGTTAGTTAATT+TGG | - | chr1_2:54302265-54302284 | Msa0077400:CDS | 15.0% |
| !!! | AAAACAACTTTAAAAAAACA+TGG | + | chr1_2:54302493-54302512 | None:intergenic | 15.0% |
| !!! | ATCTTAAATTTTTTACTTTC+TGG | - | chr1_2:54305137-54305156 | Msa0077400:intron | 15.0% |
| !! | AATCAATAACACTAAAGTAT+AGG | + | chr1_2:54301968-54301987 | None:intergenic | 20.0% |
| !!! | CTTTCTATATTGCTATTAAA+AGG | - | chr1_2:54302059-54302078 | Msa0077400:CDS | 20.0% |
| !! | ATTATAGATACTGAATTCAA+TGG | + | chr1_2:54302147-54302166 | None:intergenic | 20.0% |
| !! | GAATTCAGTATCTATAATAT+AGG | - | chr1_2:54302149-54302168 | Msa0077400:CDS | 20.0% |
| !!! | AATTTGTTGATCAGAAATTT+TGG | - | chr1_2:54302216-54302235 | Msa0077400:CDS | 20.0% |
| !! | TTAGTCTATGTTTAGATTTA+CGG | + | chr1_2:54302411-54302430 | None:intergenic | 20.0% |
| !! | GAATTACTTAACAAAATTCA+AGG | + | chr1_2:54302444-54302463 | None:intergenic | 20.0% |
| !! | AAGTAATTGAATATAAGTGT+TGG | + | chr1_2:54303391-54303410 | None:intergenic | 20.0% |
| !! | AAGATGTTATCTTATCATTT+AGG | - | chr1_2:54303760-54303779 | Msa0077400:CDS | 20.0% |
| !!! | TTAAATCTACGTTTTAATAC+AGG | - | chr1_2:54304907-54304926 | Msa0077400:CDS | 20.0% |
| !! | TATAAACTTGTACAAAAATG+TGG | + | chr1_2:54305488-54305507 | None:intergenic | 20.0% |
| !! | CTTATTTCATTTTGTCTTGT+GGG | - | chr1_2:54301937-54301956 | Msa0077400:three_prime_UTR | 25.0% |
| !! | GTTTTCTAACATTTAACTCT+AGG | - | chr1_2:54302082-54302101 | Msa0077400:CDS | 25.0% |
| ! | ATCAAAATTACAGTGACTAA+CGG | + | chr1_2:54302331-54302350 | None:intergenic | 25.0% |
| !! | GATATAGACATTTTCATCTT+TGG | + | chr1_2:54303130-54303149 | None:intergenic | 25.0% |
| ! | GATTTCGTATATAGTTACTT+AGG | + | chr1_2:54303316-54303335 | None:intergenic | 25.0% |
| !!! | ACAATCTGAAACAAAGTTTT+CGG | + | chr1_2:54303670-54303689 | None:intergenic | 25.0% |
| ! | AATGATAAGATAACATCTTG+AGG | + | chr1_2:54303759-54303778 | None:intergenic | 25.0% |
| ! | TTTGAAAAATAGAGAGAACT+CGG | - | chr1_2:54304166-54304185 | Msa0077400:CDS | 25.0% |
| ! | CAAAGATTAAGAACAATGTA+AGG | + | chr1_2:54304464-54304483 | None:intergenic | 25.0% |
| ! | TCAAAAAAAGTTTGTAGATG+CGG | - | chr1_2:54304604-54304623 | Msa0077400:intron | 25.0% |
| ! | CAAGTCCATAATAAAAATCT+AGG | - | chr1_2:54304767-54304786 | Msa0077400:intron | 25.0% |
| !! | CAGTTCCTAGATTTTTATTA+TGG | + | chr1_2:54304775-54304794 | None:intergenic | 25.0% |
| !! | AATACAGGTATGATAATGTT+AGG | - | chr1_2:54304922-54304941 | Msa0077400:CDS | 25.0% |
| ! | TCATTAAGTTAAGTTTATGC+AGG | - | chr1_2:54305717-54305736 | Msa0077400:intron | 25.0% |
| !!! | AAAAGGTGTTATTGTCTAAA+GGG | + | chr1_2:54306050-54306069 | None:intergenic | 25.0% |
| !!! | AAAAAGGTGTTATTGTCTAA+AGG | + | chr1_2:54306051-54306070 | None:intergenic | 25.0% |
| !! | AACACCTTTTTATTATGTGT+CGG | - | chr1_2:54306060-54306079 | Msa0077400:five_prime_UTR | 25.0% |
| TCATTGTTACACTTTCTTTG+TGG | - | chr1_2:54301889-54301908 | Msa0077400:three_prime_UTR | 30.0% | |
| CATTGTTACACTTTCTTTGT+GGG | - | chr1_2:54301890-54301909 | Msa0077400:three_prime_UTR | 30.0% | |
| TCTTTGTGGGTGAATTTAAT+AGG | - | chr1_2:54301903-54301922 | Msa0077400:three_prime_UTR | 30.0% | |
| ! | GCTTATTTCATTTTGTCTTG+TGG | - | chr1_2:54301936-54301955 | Msa0077400:three_prime_UTR | 30.0% |
| TTACAACTCATAGAAGAAGT+GGG | + | chr1_2:54302012-54302031 | None:intergenic | 30.0% | |
| ATTACAACTCATAGAAGAAG+TGG | + | chr1_2:54302013-54302032 | None:intergenic | 30.0% | |
| ATAGATACTGAATTCAATGG+TGG | + | chr1_2:54302144-54302163 | None:intergenic | 30.0% | |
| GTTTAGATTTACGGTGAATT+TGG | + | chr1_2:54302402-54302421 | None:intergenic | 30.0% | |
| !! | TGCTTTATTGATGATGTTTC+AGG | - | chr1_2:54302558-54302577 | Msa0077400:intron | 30.0% |
| AGAAGAAGTTTAGCATTAGA+AGG | - | chr1_2:54302614-54302633 | Msa0077400:intron | 30.0% | |
| GAAGAAGTTTAGCATTAGAA+GGG | - | chr1_2:54302615-54302634 | Msa0077400:intron | 30.0% | |
| TTAGCATTAGAAGGGAATTA+AGG | - | chr1_2:54302623-54302642 | Msa0077400:intron | 30.0% | |
| ! | AACTTTGTATCATTTTCACC+TGG | + | chr1_2:54302766-54302785 | None:intergenic | 30.0% |
| AGGTGAAAATGATACAAAGT+TGG | - | chr1_2:54302765-54302784 | Msa0077400:intron | 30.0% | |
| AAGTGGTTATTTGAACTATG+AGG | - | chr1_2:54302828-54302847 | Msa0077400:intron | 30.0% | |
| TTAAACTGTTCATCCAAACA+TGG | + | chr1_2:54302923-54302942 | None:intergenic | 30.0% | |
| ! | CTAGATGAACTTTTCCTTAT+AGG | - | chr1_2:54303009-54303028 | Msa0077400:CDS | 30.0% |
| TGCTTAGTTTACAACACAAT+TGG | - | chr1_2:54303534-54303553 | Msa0077400:CDS | 30.0% | |
| !! | CAATCTGAAACAAAGTTTTC+GGG | + | chr1_2:54303669-54303688 | None:intergenic | 30.0% |
| AAGATTCCAATGATAAAGCA+AGG | + | chr1_2:54303790-54303809 | None:intergenic | 30.0% | |
| ATCAACTGCAAGAATACAAA+AGG | - | chr1_2:54303818-54303837 | Msa0077400:CDS | 30.0% | |
| AAAAATTTGTGCAGACAACA+AGG | - | chr1_2:54304226-54304245 | Msa0077400:CDS | 30.0% | |
| GCATGGAAAATGTAATCAAA+TGG | - | chr1_2:54304298-54304317 | Msa0077400:CDS | 30.0% | |
| GCTATTGCAAATTGTTTACT+AGG | - | chr1_2:54304323-54304342 | Msa0077400:CDS | 30.0% | |
| TTTAGATCAAAGCGGAAAAT+GGG | - | chr1_2:54304646-54304665 | Msa0077400:intron | 30.0% | |
| AAATCTAGGAACTGCAAATA+AGG | - | chr1_2:54304781-54304800 | Msa0077400:intron | 30.0% | |
| AACTGCAAATAAGGTTATGA+AGG | - | chr1_2:54304790-54304809 | Msa0077400:intron | 30.0% | |
| ! | AATAAGGTTATGAAGGTACA+CGG | - | chr1_2:54304797-54304816 | Msa0077400:intron | 30.0% |
| AGATTTAGCAAGACAAACTT+CGG | + | chr1_2:54305059-54305078 | None:intergenic | 30.0% | |
| ATAAGCAGTATATATACCTG+TGG | + | chr1_2:54305119-54305138 | None:intergenic | 30.0% | |
| AGTCTATATACTCAGACAAA+TGG | + | chr1_2:54305207-54305226 | None:intergenic | 30.0% | |
| AAAACAAATCACAGACATGA+TGG | - | chr1_2:54305244-54305263 | Msa0077400:CDS | 30.0% | |
| ! | CATATGTTTAGTTCCACTTA+TGG | - | chr1_2:54305279-54305298 | Msa0077400:CDS | 30.0% |
| ! | AATTTTGCATCATCCATAAG+TGG | + | chr1_2:54305295-54305314 | None:intergenic | 30.0% |
| ACTCAATTCAGAATCAATTC+TGG | + | chr1_2:54305383-54305402 | None:intergenic | 30.0% | |
| ATGCAATCTTATAACCTGTT+TGG | - | chr1_2:54305576-54305595 | Msa0077400:intron | 30.0% | |
| TTATAACCTGTTTGGTTACA+TGG | - | chr1_2:54305584-54305603 | Msa0077400:intron | 30.0% | |
| GGTTTACTTTATGAAGCAAA+AGG | - | chr1_2:54305738-54305757 | Msa0077400:intron | 30.0% | |
| TATTGTCTAAAGGGTTCAAT+GGG | + | chr1_2:54306041-54306060 | None:intergenic | 30.0% | |
| TTATTGTCTAAAGGGTTCAA+TGG | + | chr1_2:54306042-54306061 | None:intergenic | 30.0% | |
| GATACCGACACATAATAAAA+AGG | + | chr1_2:54306067-54306086 | None:intergenic | 30.0% | |
| GAAGAAGTGGGAAGAAAAAA+AGG | + | chr1_2:54302000-54302019 | None:intergenic | 35.0% | |
| TGATAAAGTGTGTGTGTTCA+AGG | - | chr1_2:54302650-54302669 | Msa0077400:intron | 35.0% | |
| GATAAAGTGTGTGTGTTCAA+GGG | - | chr1_2:54302651-54302670 | Msa0077400:intron | 35.0% | |
| GGTTATTTGAACTATGAGGT+TGG | - | chr1_2:54302832-54302851 | Msa0077400:intron | 35.0% | |
| CAAACATGGTCTAAGTACAT+GGG | + | chr1_2:54302909-54302928 | None:intergenic | 35.0% | |
| ATACTCAAGTCTTCCTAACA+AGG | + | chr1_2:54303044-54303063 | None:intergenic | 35.0% | |
| GGAAGACTTGAGTATCAAAA+AGG | - | chr1_2:54303049-54303068 | Msa0077400:CDS | 35.0% | |
| ! | TTGTGGACTGCGTTTATTAT+CGG | + | chr1_2:54303167-54303186 | None:intergenic | 35.0% |
| ! | ACAGCATGTATTGACATAGA+AGG | + | chr1_2:54303202-54303221 | None:intergenic | 35.0% |
| !!! | TCTTGAAGCTGTTTTTCTCA+AGG | - | chr1_2:54303231-54303250 | Msa0077400:intron | 35.0% |
| !!! | GCTTTGTTTCTTTTGTACAG+CGG | - | chr1_2:54303846-54303865 | Msa0077400:CDS | 35.0% |
| GGAATTACTTCCAGAAACAA+TGG | - | chr1_2:54304058-54304077 | Msa0077400:CDS | 35.0% | |
| !! | TAGTTGCTTTGGATCTTTTG+AGG | - | chr1_2:54304138-54304157 | Msa0077400:CDS | 35.0% |
| !! | CGGAATCAAATTTTCAAGCA+AGG | - | chr1_2:54304262-54304281 | Msa0077400:CDS | 35.0% |
| ! | AGCTTCTGAGAAATTGATGA+AGG | - | chr1_2:54304430-54304449 | Msa0077400:CDS | 35.0% |
| AAGAAACTGATTAAGCTGGA+AGG | - | chr1_2:54304533-54304552 | Msa0077400:intron | 35.0% | |
| CTTTAGATCAAAGCGGAAAA+TGG | - | chr1_2:54304645-54304664 | Msa0077400:intron | 35.0% | |
| !! | CTCTAAGTTTCCTTTTTCGT+TGG | + | chr1_2:54304877-54304896 | None:intergenic | 35.0% |
| GAAGACTAGAAATGGAAGTT+TGG | - | chr1_2:54304987-54305006 | Msa0077400:CDS | 35.0% | |
| CTAACATTACAATGCAGATG+TGG | + | chr1_2:54305530-54305549 | None:intergenic | 35.0% | |
| TAAGTTCATGTTTGTGTCTG+CGG | + | chr1_2:54305640-54305659 | None:intergenic | 35.0% | |
| TTGATATCAAACTTGCCACA+TGG | + | chr1_2:54305818-54305837 | None:intergenic | 35.0% | |
| ACTTCTCTACAAAGCTGATT+TGG | - | chr1_2:54305953-54305972 | Msa0077400:five_prime_UTR | 35.0% | |
| ! | CTTCTCTACAAAGCTGATTT+GGG | - | chr1_2:54305954-54305973 | Msa0077400:five_prime_UTR | 35.0% |
| GCTGTAAAAGGGAAAGAGAA+TGG | + | chr1_2:54302116-54302135 | None:intergenic | 40.0% | |
| GATACTGAATTCAATGGTGG+TGG | + | chr1_2:54302141-54302160 | None:intergenic | 40.0% | |
| TGAATAGTCCCTAGTTGCAA+GGG | + | chr1_2:54302716-54302735 | None:intergenic | 40.0% | |
| CCAAACATGGTCTAAGTACA+TGG | + | chr1_2:54302910-54302929 | None:intergenic | 40.0% | |
| CCATGTACTTAGACCATGTT+TGG | - | chr1_2:54302907-54302926 | Msa0077400:intron | 40.0% | |
| GCTGCACTTCATGTATTTGA+AGG | - | chr1_2:54303082-54303101 | Msa0077400:CDS | 40.0% | |
| GCTAAATCGTTGCAAACTCT+GGG | - | chr1_2:54303253-54303272 | Msa0077400:intron | 40.0% | |
| GTCAGTATCAATGTCATGTC+TGG | - | chr1_2:54303443-54303462 | Msa0077400:CDS | 40.0% | |
| AGTATCAATGTCATGTCTGG+TGG | - | chr1_2:54303446-54303465 | Msa0077400:CDS | 40.0% | |
| GTTGAATCTGCATTACCAGA+AGG | - | chr1_2:54303639-54303658 | Msa0077400:CDS | 40.0% | |
| AATCTGCATTACCAGAAGGT+TGG | - | chr1_2:54303643-54303662 | Msa0077400:CDS | 40.0% | |
| AAATGCTGTAGAACTGCTTC+CGG | - | chr1_2:54303710-54303729 | Msa0077400:CDS | 40.0% | |
| GGAAAGCCTTGCTTTATCAT+TGG | - | chr1_2:54303781-54303800 | Msa0077400:CDS | 40.0% | |
| GCCAAGAAACAACATAGAAG+AGG | - | chr1_2:54303920-54303939 | Msa0077400:CDS | 40.0% | |
| !! | GCCTCTTCTATGTTGTTTCT+TGG | + | chr1_2:54303924-54303943 | None:intergenic | 40.0% |
| AAACACTCAGAGCGAAAGAA+AGG | + | chr1_2:54304004-54304023 | None:intergenic | 40.0% | |
| TCTCTTCTCTCCATTGTTTC+TGG | + | chr1_2:54304071-54304090 | None:intergenic | 40.0% | |
| !! | ACTCTAGCTCTTTGTTACTG+CGG | - | chr1_2:54304101-54304120 | Msa0077400:CDS | 40.0% |
| AACAAGGTTTGTGTCGAAGA+CGG | - | chr1_2:54304242-54304261 | Msa0077400:CDS | 40.0% | |
| AAGGCAATTTCTCAGATGCA+TGG | - | chr1_2:54304281-54304300 | Msa0077400:CDS | 40.0% | |
| CGCAAAGAAACTGATTAAGC+TGG | - | chr1_2:54304529-54304548 | Msa0077400:intron | 40.0% | |
| AAACTGATTAAGCTGGAAGG+TGG | - | chr1_2:54304536-54304555 | Msa0077400:intron | 40.0% | |
| AACTGATTAAGCTGGAAGGT+GGG | - | chr1_2:54304537-54304556 | Msa0077400:intron | 40.0% | |
| ! | ACTACTAGCGCGGATTTTAT+CGG | - | chr1_2:54304580-54304599 | Msa0077400:intron | 40.0% |
| !! | GATGCTGCTTTAGATCAAAG+CGG | - | chr1_2:54304638-54304657 | Msa0077400:intron | 40.0% |
| GCTAAGATTCAGATTGCACA+AGG | - | chr1_2:54304695-54304714 | Msa0077400:intron | 40.0% | |
| ! | ACACAAAGTGCCAACGAAAA+AGG | - | chr1_2:54304864-54304883 | Msa0077400:CDS | 40.0% |
| TGCAATCTAGAAGCGGAATA+AGG | + | chr1_2:54305094-54305113 | None:intergenic | 40.0% | |
| ! | TCTGGCTTGACTTCCAATAA+CGG | - | chr1_2:54305155-54305174 | Msa0077400:intron | 40.0% |
| GAGGAGAACTGAACCTATAA+GGG | + | chr1_2:54305181-54305200 | None:intergenic | 40.0% | |
| AGAGGAGAACTGAACCTATA+AGG | + | chr1_2:54305182-54305201 | None:intergenic | 40.0% | |
| ATACTCAGACAAATGGCAAG+AGG | + | chr1_2:54305200-54305219 | None:intergenic | 40.0% | |
| ! | GTGGTTAAGACACTTGCTTT+TGG | + | chr1_2:54305511-54305530 | None:intergenic | 40.0% |
| TGATATTGAGCCAAACCATG+TGG | - | chr1_2:54305800-54305819 | Msa0077400:intron | 40.0% | |
| ATCAAACTTGCCACATGGTT+TGG | + | chr1_2:54305813-54305832 | None:intergenic | 40.0% | |
| !! | GCTTGTGTTCTGAGAAAACT+TGG | - | chr1_2:54305840-54305859 | Msa0077400:intron | 40.0% |
| !! | TGTGTTCTGAGAAAACTTGG+TGG | - | chr1_2:54305843-54305862 | Msa0077400:intron | 40.0% |
| GCTTTAATGCATCAGTGAGA+AGG | + | chr1_2:54305896-54305915 | None:intergenic | 40.0% | |
| ACACAACAAACTCATCTGCA+TGG | - | chr1_2:54305919-54305938 | Msa0077400:intron | 40.0% | |
| TCATCTGCATGGTACAATCT+TGG | - | chr1_2:54305930-54305949 | Msa0077400:five_prime_UTR | 40.0% | |
| ! | TGATTTGGGAACATCAGCAT+TGG | - | chr1_2:54305968-54305987 | Msa0077400:five_prime_UTR | 40.0% |
| !!! | ACGCTGACACTGATTTTCTG+AGG | + | chr1_2:54302372-54302391 | None:intergenic | 45.0% |
| ATCAGAGTCCCTTGCAACTA+GGG | - | chr1_2:54302705-54302724 | Msa0077400:intron | 45.0% | |
| CTGAATAGTCCCTAGTTGCA+AGG | + | chr1_2:54302717-54302736 | None:intergenic | 45.0% | |
| GACTATTCAGCATCAGCAAG+TGG | - | chr1_2:54302727-54302746 | Msa0077400:intron | 45.0% | |
| GAATCATCTCTGCGTGAAAG+TGG | - | chr1_2:54302811-54302830 | Msa0077400:intron | 45.0% | |
| ACATGGTCTAAGTACATGGG+AGG | + | chr1_2:54302906-54302925 | None:intergenic | 45.0% | |
| ! | CAAGGCTCTAGCTTCCTATA+AGG | + | chr1_2:54303026-54303045 | None:intergenic | 45.0% |
| !! | TAGGAAGCTAGAGCCTTGTT+AGG | - | chr1_2:54303028-54303047 | Msa0077400:CDS | 45.0% |
| GGCTAAATCGTTGCAAACTC+TGG | - | chr1_2:54303252-54303271 | Msa0077400:intron | 45.0% | |
| ! | AATCGTTGCAAACTCTGGGA+AGG | - | chr1_2:54303257-54303276 | Msa0077400:intron | 45.0% |
| ! | CAAACTCTGGGAAGGTTTCA+AGG | - | chr1_2:54303265-54303284 | Msa0077400:intron | 45.0% |
| TAGAACTGCTTCCGGAGTTA+TGG | - | chr1_2:54303718-54303737 | Msa0077400:CDS | 45.0% | |
| ! | TCTTTCGCTCTGAGTGTTTG+TGG | - | chr1_2:54304005-54304024 | Msa0077400:CDS | 45.0% |
| GACACTAGCTCAACAAGTTG+AGG | - | chr1_2:54304037-54304056 | Msa0077400:CDS | 45.0% | |
| AGGCGAGCATATAGTTGCTT+TGG | - | chr1_2:54304127-54304146 | Msa0077400:CDS | 45.0% | |
| CTCGGTATACTCAGATTGCA+TGG | - | chr1_2:54304184-54304203 | Msa0077400:CDS | 45.0% | |
| GGTATACTCAGATTGCATGG+AGG | - | chr1_2:54304187-54304206 | Msa0077400:CDS | 45.0% | |
| GCGGATATAAACTACTAGCG+CGG | - | chr1_2:54304570-54304589 | Msa0077400:intron | 45.0% | |
| CAAAGCGGAAAATGGGATCA+AGG | - | chr1_2:54304653-54304672 | Msa0077400:intron | 45.0% | |
| TCGCGACAGAAGACTAGAAA+TGG | - | chr1_2:54304979-54304998 | Msa0077400:CDS | 45.0% | |
| TGACAAGGCTGTGTACACAT+TGG | + | chr1_2:54305023-54305042 | None:intergenic | 45.0% | |
| ! | ATGTGTACACAGCCTTGTCA+AGG | - | chr1_2:54305023-54305042 | Msa0077400:CDS | 45.0% |
| TGTGGAGTGCAATCTAGAAG+CGG | + | chr1_2:54305101-54305120 | None:intergenic | 45.0% | |
| CTTCCAATAACGGCCCTTAT+AGG | - | chr1_2:54305165-54305184 | Msa0077400:intron | 45.0% | |
| GAACCTATAAGGGCCGTTAT+TGG | + | chr1_2:54305171-54305190 | None:intergenic | 45.0% | |
| TTTGCCTCTAACCCTATGAC+TGG | - | chr1_2:54305418-54305437 | Msa0077400:CDS | 45.0% | |
| AGTTCCAGTCATAGGGTTAG+AGG | + | chr1_2:54305425-54305444 | None:intergenic | 45.0% | |
| TAACCCTATGACTGGAACTG+CGG | - | chr1_2:54305426-54305445 | Msa0077400:CDS | 45.0% | |
| GCATCACCATGTAACCAAAC+AGG | + | chr1_2:54305593-54305612 | None:intergenic | 45.0% | |
| !! | TGGTGGTGGCTGCTGTAAAA+GGG | + | chr1_2:54302127-54302146 | None:intergenic | 50.0% |
| !! | ATGGTGGTGGCTGCTGTAAA+AGG | + | chr1_2:54302128-54302147 | None:intergenic | 50.0% |
| CATCAGAGTCCCTTGCAACT+AGG | - | chr1_2:54302704-54302723 | Msa0077400:intron | 50.0% | |
| AGTGGCTATTCATCTCGTCC+AGG | - | chr1_2:54302745-54302764 | Msa0077400:intron | 50.0% | |
| !! | GAAGGCACTGAATCACGTTG+TGG | + | chr1_2:54303184-54303203 | None:intergenic | 50.0% |
| !! | TGGTGCTACACACGCTACAA+CGG | + | chr1_2:54303371-54303390 | None:intergenic | 50.0% |
| !! | AAGTTTTCGGGCCAACCTTC+TGG | + | chr1_2:54303657-54303676 | None:intergenic | 50.0% |
| TTTGTACAGCGGCTACGAAG+CGG | - | chr1_2:54303857-54303876 | Msa0077400:CDS | 50.0% | |
| TTCAACTGAGAGCGAAGTGG+AGG | + | chr1_2:54303888-54303907 | None:intergenic | 50.0% | |
| CCACTTCGCTCTCAGTTGAA+CGG | - | chr1_2:54303888-54303907 | Msa0077400:CDS | 50.0% | |
| GCTCTTTGTTACTGCGGTGA+AGG | - | chr1_2:54304107-54304126 | Msa0077400:CDS | 50.0% | |
| GAAGGTGGGTCGAGTATTAG+CGG | - | chr1_2:54304551-54304570 | Msa0077400:intron | 50.0% | |
| ! | TGTACACAGCCTTGTCAAGG+TGG | - | chr1_2:54305026-54305045 | Msa0077400:CDS | 50.0% |
| GCTTCTAGATTGCACTCCAC+AGG | - | chr1_2:54305100-54305119 | Msa0077400:intron | 50.0% | |
| CATCCGCAGTTCCAGTCATA+GGG | + | chr1_2:54305432-54305451 | None:intergenic | 50.0% | |
| TCATCCGCAGTTCCAGTCAT+AGG | + | chr1_2:54305433-54305452 | None:intergenic | 50.0% | |
| TTTGTGTCTGCGGCAACATC+GGG | + | chr1_2:54305630-54305649 | None:intergenic | 50.0% | |
| GTTTGTGTCTGCGGCAACAT+CGG | + | chr1_2:54305631-54305650 | None:intergenic | 50.0% | |
| ! | ATGTGTCGGTATCGTGTCAC+TGG | - | chr1_2:54306074-54306093 | Msa0077400:five_prime_UTR | 50.0% |
| CCTGCGAGGTTCCATAACTC+CGG | + | chr1_2:54303732-54303751 | None:intergenic | 55.0% | |
| CCGTTCAACTGAGAGCGAAG+TGG | + | chr1_2:54303891-54303910 | None:intergenic | 55.0% | |
| GGCATCATGCCACCTTGACA+AGG | + | chr1_2:54305038-54305057 | None:intergenic | 55.0% | |
| TGGCAGACACTGACACGTGT+TGG | - | chr1_2:54306094-54306113 | Msa0077400:five_prime_UTR | 55.0% | |
| CCGGAGTTATGGAACCTCGC+AGG | - | chr1_2:54303729-54303748 | Msa0077400:CDS | 60.0% | |
| CATCTTGAGGTGAGCCTGCG+AGG | + | chr1_2:54303746-54303765 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 54301883 | 54306208 | 54301883 | ID=Msa0077400;Name=Msa0077400 |
| chr1_2 | mRNA | 54301883 | 54306208 | 54301883 | ID=Msa0077400-mRNA-1;Parent=Msa0077400;Name=Msa0077400-mRNA-1;_AED=0.11;_eAED=0.11;_QI=297|1|1|1|0.8|0.66|6|147|733 |
| chr1_2 | exon | 54301883 | 54302352 | 54301883 | ID=Msa0077400-mRNA-1:exon:16807;Parent=Msa0077400-mRNA-1 |
| chr1_2 | exon | 54302970 | 54303123 | 54302970 | ID=Msa0077400-mRNA-1:exon:16806;Parent=Msa0077400-mRNA-1 |
| chr1_2 | exon | 54303280 | 54304487 | 54303280 | ID=Msa0077400-mRNA-1:exon:16805;Parent=Msa0077400-mRNA-1 |
| chr1_2 | exon | 54304805 | 54305060 | 54304805 | ID=Msa0077400-mRNA-1:exon:16804;Parent=Msa0077400-mRNA-1 |
| chr1_2 | exon | 54305242 | 54305511 | 54305242 | ID=Msa0077400-mRNA-1:exon:16803;Parent=Msa0077400-mRNA-1 |
| chr1_2 | exon | 54305921 | 54306208 | 54305921 | ID=Msa0077400-mRNA-1:exon:16802;Parent=Msa0077400-mRNA-1 |
| chr1_2 | five_prime_UTR | 54305921 | 54306208 | 54305921 | ID=Msa0077400-mRNA-1:five_prime_utr;Parent=Msa0077400-mRNA-1 |
| chr1_2 | five_prime_UTR | 54305503 | 54305511 | 54305503 | ID=Msa0077400-mRNA-1:five_prime_utr;Parent=Msa0077400-mRNA-1 |
| chr1_2 | CDS | 54305242 | 54305502 | 54305242 | ID=Msa0077400-mRNA-1:cds;Parent=Msa0077400-mRNA-1 |
| chr1_2 | CDS | 54304805 | 54305060 | 54304805 | ID=Msa0077400-mRNA-1:cds;Parent=Msa0077400-mRNA-1 |
| chr1_2 | CDS | 54303280 | 54304487 | 54303280 | ID=Msa0077400-mRNA-1:cds;Parent=Msa0077400-mRNA-1 |
| chr1_2 | CDS | 54302970 | 54303123 | 54302970 | ID=Msa0077400-mRNA-1:cds;Parent=Msa0077400-mRNA-1 |
| chr1_2 | CDS | 54302030 | 54302352 | 54302030 | ID=Msa0077400-mRNA-1:cds;Parent=Msa0077400-mRNA-1 |
| chr1_2 | three_prime_UTR | 54301883 | 54302029 | 54301883 | ID=Msa0077400-mRNA-1:three_prime_utr;Parent=Msa0077400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
