Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002330 | KEH27024.1 | 89.820 | 167 | 17 | 0 | 28 | 194 | 1 | 167 | 1.28e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002330 | sp|P32045|PRP2_SOLLC | 45.205 | 146 | 63 | 3 | 39 | 182 | 13 | 143 | 2.04e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002330 | A0A072UB58 | 89.820 | 167 | 17 | 0 | 28 | 194 | 1 | 167 | 6.10e-108 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1002330 | 0.807452 | 5.020516e-50 | -8.615850e-47 |
| Msa0026450 | Msa1002330 | 0.838081 | 3.553808e-57 | -8.615850e-47 |
| Msa0678130 | Msa1002330 | 0.802172 | 6.364404e-49 | -8.615850e-47 |
| Msa0711830 | Msa1002330 | 0.822507 | 2.283110e-53 | -8.615850e-47 |
| Msa0738340 | Msa1002330 | 0.803261 | 3.792314e-49 | -8.615850e-47 |
| Msa0739730 | Msa1002330 | 0.825363 | 4.884282e-54 | -8.615850e-47 |
| Msa0760130 | Msa1002330 | 0.807996 | 3.846925e-50 | -8.615850e-47 |
| Msa0761470 | Msa1002330 | 0.804328 | 2.277521e-49 | -8.615850e-47 |
| Msa0830510 | Msa1002330 | 0.809207 | 2.120312e-50 | -8.615850e-47 |
| Msa0131770 | Msa1002330 | 0.800808 | 1.211312e-48 | -8.615850e-47 |
| Msa0145260 | Msa1002330 | 0.835396 | 1.719196e-56 | -8.615850e-47 |
| Msa0149300 | Msa1002330 | 0.801999 | 6.906355e-49 | -8.615850e-47 |
| Msa0165520 | Msa1002330 | 0.815068 | 1.117071e-51 | -8.615850e-47 |
| Msa0170030 | Msa1002330 | 0.805107 | 1.566015e-49 | -8.615850e-47 |
| Msa0218810 | Msa1002330 | 0.819232 | 1.294104e-52 | -8.615850e-47 |
| Msa0367870 | Msa1002330 | 0.812178 | 4.831873e-51 | -8.615850e-47 |
| Msa0399300 | Msa1002330 | 0.822771 | 1.981656e-53 | -8.615850e-47 |
| Msa0999680 | Msa1002330 | 0.809802 | 1.580279e-50 | -8.615850e-47 |
| Msa1000150 | Msa1002330 | 0.802176 | 6.350811e-49 | -8.615850e-47 |
| Msa1000290 | Msa1002330 | 0.801394 | 9.191802e-49 | -8.615850e-47 |
| Msa1002330 | Msa1019150 | 0.803899 | 2.796874e-49 | -8.615850e-47 |
| Msa1002330 | Msa1043480 | 0.801303 | 9.595727e-49 | -8.615850e-47 |
| Msa1002330 | Msa1121480 | 0.810125 | 1.346683e-50 | -8.615850e-47 |
| Msa1002330 | Msa1121490 | 0.835639 | 1.492709e-56 | -8.615850e-47 |
| Msa1002330 | Msa1131050 | 0.806256 | 8.987262e-50 | -8.615850e-47 |
| Msa1002330 | Msa1147740 | 0.820163 | 7.931379e-53 | -8.615850e-47 |
| Msa1002330 | Msa1188990 | 0.815547 | 8.744385e-52 | -8.615850e-47 |
| Msa1002330 | Msa1313980 | 0.814716 | 1.337092e-51 | -8.615850e-47 |
| Msa1002330 | Msa1381530 | 0.805281 | 1.439705e-49 | -8.615850e-47 |
| Msa1002330 | Msa1389200 | 0.834544 | 2.818385e-56 | -8.615850e-47 |
| Msa1002330 | Msa1397740 | 0.811217 | 7.820197e-51 | -8.615850e-47 |
| Msa1002330 | Msa1425090 | 0.806709 | 7.210015e-50 | -8.615850e-47 |
| Msa1002330 | Msa1459100 | 0.803767 | 2.979462e-49 | -8.615850e-47 |
| Msa1002330 | Msa1466540 | 0.822093 | 2.847934e-53 | -8.615850e-47 |
| Msa0290870 | Msa1002330 | 0.841228 | 5.396850e-58 | -8.615850e-47 |
| Msa0537500 | Msa1002330 | 0.811694 | 6.160228e-51 | -8.615850e-47 |
| Msa0875290 | Msa1002330 | 0.810490 | 1.123502e-50 | -8.615850e-47 |
| Msa0884740 | Msa1002330 | 0.815320 | 9.818132e-52 | -8.615850e-47 |
| Msa0896410 | Msa1002330 | 0.802686 | 4.985949e-49 | -8.615850e-47 |
| Msa0899970 | Msa1002330 | 0.811751 | 5.984332e-51 | -8.615850e-47 |
| Msa0926890 | Msa1002330 | 0.818422 | 1.976841e-52 | -8.615850e-47 |
| Msa0936390 | Msa1002330 | 0.800683 | 1.284520e-48 | -8.615850e-47 |
| Msa0961360 | Msa1002330 | 0.809381 | 1.946144e-50 | -8.615850e-47 |
| Msa0965080 | Msa1002330 | 0.806692 | 7.268987e-50 | -8.615850e-47 |
| Msa0965290 | Msa1002330 | 0.813112 | 3.017981e-51 | -8.615850e-47 |
| Msa0969450 | Msa1002330 | 0.800162 | 1.639944e-48 | -8.615850e-47 |
| Msa0969520 | Msa1002330 | 0.807705 | 4.436598e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002330 | MtrunA17_Chr6g0484041 | 88.554 | 166 | 19 | 0 | 17 | 182 | 2 | 167 | 2.08e-103 | 310 |
| Msa1002330 | MtrunA17_Chr6g0484021 | 73.410 | 173 | 42 | 2 | 15 | 183 | 8 | 180 | 8.15e-81 | 251 |
| Msa1002330 | MtrunA17_Chr6g0483971 | 64.151 | 159 | 44 | 2 | 28 | 186 | 1 | 146 | 5.82e-63 | 197 |
| Msa1002330 | MtrunA17_Chr6g0484031 | 63.125 | 160 | 45 | 3 | 28 | 185 | 1 | 148 | 4.43e-58 | 189 |
| Msa1002330 | MtrunA17_Chr1g0190651 | 50.000 | 150 | 57 | 4 | 37 | 183 | 11 | 145 | 1.71e-41 | 137 |
| Msa1002330 | MtrunA17_Chr1g0190671 | 46.980 | 149 | 61 | 4 | 37 | 182 | 11 | 144 | 5.40e-38 | 128 |
| Msa1002330 | MtrunA17_Chr1g0190661 | 44.667 | 150 | 63 | 4 | 38 | 182 | 10 | 144 | 9.39e-38 | 127 |
| Msa1002330 | MtrunA17_Chr1g0190641 | 43.046 | 151 | 68 | 4 | 35 | 183 | 6 | 140 | 9.53e-36 | 122 |
| Msa1002330 | MtrunA17_Chr7g0274181 | 45.455 | 143 | 61 | 3 | 54 | 194 | 69 | 196 | 5.53e-35 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002330 | AT3G04720.1 | 45.255 | 137 | 58 | 3 | 49 | 183 | 71 | 192 | 3.39e-34 | 120 |
Find 36 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATAATCAACTTATAAT+AGG | 0.235741 | 6_4:-87937182 | None:intergenic |
| CATCAACAATTCTTACTGTT+TGG | 0.304823 | 6_4:-87937022 | None:intergenic |
| TTGTCATGGCGAAGCAAATA+TGG | 0.324514 | 6_4:+87936193 | Msa1002330:CDS |
| AAGCTTGACATCAGTGGGTA+TGG | 0.407454 | 6_4:+87937089 | Msa1002330:CDS |
| AATATAATCAACTTATAATA+GGG | 0.407482 | 6_4:-87937181 | None:intergenic |
| ATTCTTACTGTTTGGATGAT+CGG | 0.429431 | 6_4:-87937014 | None:intergenic |
| TGTAATAGTGGTGTGTTACT+TGG | 0.431084 | 6_4:-87935935 | None:intergenic |
| GCTTAGCCATACACCACAAA+AGG | 0.473204 | 6_4:-87936224 | None:intergenic |
| AACAAGGTAAAAGAAACAAG+TGG | 0.491584 | 6_4:+87936119 | Msa1002330:CDS |
| AAGTGGGACTTGAACACATC+AGG | 0.508499 | 6_4:+87936136 | Msa1002330:CDS |
| TAGCCATGGAGGGCTTGACT+TGG | 0.523884 | 6_4:+87937049 | Msa1002330:CDS |
| ACCAAGTGGTGTTGTAATAG+TGG | 0.529617 | 6_4:-87935947 | None:intergenic |
| CATGGCGAAGCAAATATGGT+TGG | 0.540683 | 6_4:+87936197 | Msa1002330:CDS |
| CAGGTGACAAACAGAGATAG+TGG | 0.549599 | 6_4:+87936966 | Msa1002330:intron |
| AGCTTGACATCAGTGGGTAT+GGG | 0.578330 | 6_4:+87937090 | Msa1002330:CDS |
| AAACAGAGATAGTGGGAGTA+CGG | 0.578593 | 6_4:+87936974 | Msa1002330:CDS |
| AGTGGGTATGGGATGTCTCA+AGG | 0.579462 | 6_4:+87937101 | Msa1002330:CDS |
| ATGGCGAAGCAAATATGGTT+GGG | 0.584464 | 6_4:+87936198 | Msa1002330:CDS |
| ATTGATTTCACTTTGAGCTG+AGG | 0.593456 | 6_4:-87936056 | None:intergenic |
| ATGGGAACAAATCATTGTCA+TGG | 0.598375 | 6_4:+87936179 | Msa1002330:CDS |
| AATTCTCCAACAACTAAACA+AGG | 0.600086 | 6_4:+87936103 | Msa1002330:CDS |
| TATCCAAGTCAAGCCCTCCA+TGG | 0.603969 | 6_4:-87937052 | None:intergenic |
| TTGATGACTGTAGCCATGGA+GGG | 0.607696 | 6_4:+87937039 | Msa1002330:CDS |
| TGTTATGTGCAGATCAAGAT+GGG | 0.608205 | 6_4:+87936161 | Msa1002330:CDS |
| GTCTCAAGGTTACCTCGTGG+TGG | 0.616795 | 6_4:+87937115 | Msa1002330:CDS |
| ACCACTATTACAACACCACT+TGG | 0.617346 | 6_4:+87935946 | Msa1002330:CDS |
| GTGTTATGTGCAGATCAAGA+TGG | 0.619243 | 6_4:+87936160 | Msa1002330:CDS |
| ATTGTTGATGACTGTAGCCA+TGG | 0.620341 | 6_4:+87937035 | Msa1002330:CDS |
| ACAAGGTAAAAGAAACAAGT+GGG | 0.638387 | 6_4:+87936120 | Msa1002330:CDS |
| ATATCAACACCAAATCCAGA+AGG | 0.643431 | 6_4:-87936015 | None:intergenic |
| AGGTGACAAACAGAGATAGT+GGG | 0.646433 | 6_4:+87936967 | Msa1002330:intron |
| GTTGATGACTGTAGCCATGG+AGG | 0.697536 | 6_4:+87937038 | Msa1002330:CDS |
| GATTATGAATTTGTAGACTG+TGG | 0.713920 | 6_4:+87937137 | Msa1002330:CDS |
| TGGCTAAGCAAAGATGCTTG+TGG | 0.716242 | 6_4:+87936238 | Msa1002330:CDS |
| CAAATTCATAATCCACCACG+AGG | 0.726486 | 6_4:-87937127 | None:intergenic |
| GATGTCTCAAGGTTACCTCG+TGG | 0.742245 | 6_4:+87937112 | Msa1002330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTTAATAGTTTATATA+TGG | - | chr6_4:87936924-87936943 | None:intergenic | 10.0% |
| !! | AAGATTTAATAGTTTATATA+TGG | - | chr6_4:87936924-87936943 | None:intergenic | 10.0% |
| !!! | TGATTATATTTTCTGATTTT+TGG | + | chr6_4:87936546-87936565 | Msa1002330:intron | 15.0% |
| !!! | GATTATATTTTCTGATTTTT+GGG | + | chr6_4:87936547-87936566 | Msa1002330:intron | 15.0% |
| !! | AAAACTAATATTTGAACTTT+AGG | + | chr6_4:87936591-87936610 | Msa1002330:intron | 15.0% |
| !! | AAACTAATATTTGAACTTTA+GGG | + | chr6_4:87936592-87936611 | Msa1002330:intron | 15.0% |
| !!! | TACTATAAGTACATTTTAAA+TGG | - | chr6_4:87936659-87936678 | None:intergenic | 15.0% |
| !!! | ATAATAGACTATAATTTTGA+TGG | + | chr6_4:87936828-87936847 | Msa1002330:intron | 15.0% |
| !!! | TGATTATATTTTCTGATTTT+TGG | + | chr6_4:87936546-87936565 | Msa1002330:intron | 15.0% |
| !!! | GATTATATTTTCTGATTTTT+GGG | + | chr6_4:87936547-87936566 | Msa1002330:intron | 15.0% |
| !! | AAAACTAATATTTGAACTTT+AGG | + | chr6_4:87936591-87936610 | Msa1002330:intron | 15.0% |
| !! | AAACTAATATTTGAACTTTA+GGG | + | chr6_4:87936592-87936611 | Msa1002330:intron | 15.0% |
| !!! | TACTATAAGTACATTTTAAA+TGG | - | chr6_4:87936659-87936678 | None:intergenic | 15.0% |
| !!! | ATAATAGACTATAATTTTGA+TGG | + | chr6_4:87936828-87936847 | Msa1002330:intron | 15.0% |
| !!! | AACTTTTTCTTCTGAATTTT+TGG | + | chr6_4:87936403-87936422 | Msa1002330:intron | 20.0% |
| !!! | TATAAGTACATTTTAAATGG+TGG | - | chr6_4:87936656-87936675 | None:intergenic | 20.0% |
| !!! | AACTTTTTCTTCTGAATTTT+TGG | + | chr6_4:87936403-87936422 | Msa1002330:intron | 20.0% |
| !!! | TATAAGTACATTTTAAATGG+TGG | - | chr6_4:87936656-87936675 | None:intergenic | 20.0% |
| !!! | AGCATAGAAGTTTTAGTTAT+AGG | - | chr6_4:87935902-87935921 | None:intergenic | 25.0% |
| !!! | TAGACTATAATTTTGATGGT+TGG | + | chr6_4:87936832-87936851 | Msa1002330:intron | 25.0% |
| !!! | AGCATAGAAGTTTTAGTTAT+AGG | - | chr6_4:87935902-87935921 | None:intergenic | 25.0% |
| !!! | TAGACTATAATTTTGATGGT+TGG | + | chr6_4:87936832-87936851 | Msa1002330:intron | 25.0% |
| AATTCTCCAACAACTAAACA+AGG | + | chr6_4:87936103-87936122 | Msa1002330:CDS | 30.0% | |
| !! | CTTTTACCTTGTTTAGTTGT+TGG | - | chr6_4:87936112-87936131 | None:intergenic | 30.0% |
| AACAAGGTAAAAGAAACAAG+TGG | + | chr6_4:87936119-87936138 | Msa1002330:CDS | 30.0% | |
| ACAAGGTAAAAGAAACAAGT+GGG | + | chr6_4:87936120-87936139 | Msa1002330:CDS | 30.0% | |
| ! | CAGCCTACAAATACATTTTA+GGG | - | chr6_4:87936370-87936389 | None:intergenic | 30.0% |
| TTCAGAAGAAAAAGTTCAGA+TGG | - | chr6_4:87936399-87936418 | None:intergenic | 30.0% | |
| !!! | AATTTTTTTCCACCATTGAG+AGG | + | chr6_4:87936465-87936484 | Msa1002330:intron | 30.0% |
| TCTAAATGTGTTACAAGTCT+CGG | - | chr6_4:87936506-87936525 | None:intergenic | 30.0% | |
| ! | TAGCCTATAGAGACATTTTA+GGG | - | chr6_4:87936630-87936649 | None:intergenic | 30.0% |
| TGTGTTTAGTCTGTTTGAAT+CGG | + | chr6_4:87936726-87936745 | Msa1002330:intron | 30.0% | |
| ! | ATTTTGTCAACTCGAATTTC+AGG | + | chr6_4:87936947-87936966 | Msa1002330:intron | 30.0% |
| ATTCTTACTGTTTGGATGAT+CGG | - | chr6_4:87937017-87937036 | None:intergenic | 30.0% | |
| CATCAACAATTCTTACTGTT+TGG | - | chr6_4:87937025-87937044 | None:intergenic | 30.0% | |
| TTTAAAAAGCTTGACATCAG+TGG | + | chr6_4:87937083-87937102 | Msa1002330:CDS | 30.0% | |
| TTAAAAAGCTTGACATCAGT+GGG | + | chr6_4:87937084-87937103 | Msa1002330:CDS | 30.0% | |
| GATTATGAATTTGTAGACTG+TGG | + | chr6_4:87937137-87937156 | Msa1002330:CDS | 30.0% | |
| AATTCTCCAACAACTAAACA+AGG | + | chr6_4:87936103-87936122 | Msa1002330:CDS | 30.0% | |
| !! | CTTTTACCTTGTTTAGTTGT+TGG | - | chr6_4:87936112-87936131 | None:intergenic | 30.0% |
| AACAAGGTAAAAGAAACAAG+TGG | + | chr6_4:87936119-87936138 | Msa1002330:CDS | 30.0% | |
| ACAAGGTAAAAGAAACAAGT+GGG | + | chr6_4:87936120-87936139 | Msa1002330:CDS | 30.0% | |
| ! | CAGCCTACAAATACATTTTA+GGG | - | chr6_4:87936370-87936389 | None:intergenic | 30.0% |
| TTCAGAAGAAAAAGTTCAGA+TGG | - | chr6_4:87936399-87936418 | None:intergenic | 30.0% | |
| !!! | AATTTTTTTCCACCATTGAG+AGG | + | chr6_4:87936465-87936484 | Msa1002330:intron | 30.0% |
| TCTAAATGTGTTACAAGTCT+CGG | - | chr6_4:87936506-87936525 | None:intergenic | 30.0% | |
| ! | TAGCCTATAGAGACATTTTA+GGG | - | chr6_4:87936630-87936649 | None:intergenic | 30.0% |
| TGTGTTTAGTCTGTTTGAAT+CGG | + | chr6_4:87936726-87936745 | Msa1002330:intron | 30.0% | |
| ! | ATTTTGTCAACTCGAATTTC+AGG | + | chr6_4:87936947-87936966 | Msa1002330:intron | 30.0% |
| ATTCTTACTGTTTGGATGAT+CGG | - | chr6_4:87937017-87937036 | None:intergenic | 30.0% | |
| CATCAACAATTCTTACTGTT+TGG | - | chr6_4:87937025-87937044 | None:intergenic | 30.0% | |
| TTTAAAAAGCTTGACATCAG+TGG | + | chr6_4:87937083-87937102 | Msa1002330:CDS | 30.0% | |
| TTAAAAAGCTTGACATCAGT+GGG | + | chr6_4:87937084-87937103 | Msa1002330:CDS | 30.0% | |
| GATTATGAATTTGTAGACTG+TGG | + | chr6_4:87937137-87937156 | Msa1002330:CDS | 30.0% | |
| ! | TGTAATAGTGGTGTGTTACT+TGG | - | chr6_4:87935938-87935957 | None:intergenic | 35.0% |
| CAAAAAGAGAAACTACCAAG+TGG | - | chr6_4:87935964-87935983 | None:intergenic | 35.0% | |
| !! | CACTTGGTAGTTTCTCTTTT+TGG | + | chr6_4:87935962-87935981 | Msa1002330:CDS | 35.0% |
| ATATCAACACCAAATCCAGA+AGG | - | chr6_4:87936018-87936037 | None:intergenic | 35.0% | |
| ! | ATTGATTTCACTTTGAGCTG+AGG | - | chr6_4:87936059-87936078 | None:intergenic | 35.0% |
| TGTTATGTGCAGATCAAGAT+GGG | + | chr6_4:87936161-87936180 | Msa1002330:CDS | 35.0% | |
| ATGGGAACAAATCATTGTCA+TGG | + | chr6_4:87936179-87936198 | Msa1002330:CDS | 35.0% | |
| TTCATGTCACATAACCTTGT+CGG | + | chr6_4:87936312-87936331 | Msa1002330:intron | 35.0% | |
| !!! | TACAAATACATTTTAGGGCG+TGG | - | chr6_4:87936365-87936384 | None:intergenic | 35.0% |
| ACGCCCTAAAATGTATTTGT+AGG | + | chr6_4:87936364-87936383 | Msa1002330:intron | 35.0% | |
| ! | GCAGCCTACAAATACATTTT+AGG | - | chr6_4:87936371-87936390 | None:intergenic | 35.0% |
| AGAAGAAAAAGTTCAGATGG+TGG | - | chr6_4:87936396-87936415 | None:intergenic | 35.0% | |
| GATTCAATTCTACCTCTCAA+TGG | - | chr6_4:87936480-87936499 | None:intergenic | 35.0% | |
| !!! | CTGATTTTTGGGTCAACTTT+AGG | + | chr6_4:87936558-87936577 | Msa1002330:intron | 35.0% |
| ! | GTAGCCTATAGAGACATTTT+AGG | - | chr6_4:87936631-87936650 | None:intergenic | 35.0% |
| AGAGATTCGTCATTTACTCA+TGG | - | chr6_4:87936890-87936909 | None:intergenic | 35.0% | |
| ! | TGTAATAGTGGTGTGTTACT+TGG | - | chr6_4:87935938-87935957 | None:intergenic | 35.0% |
| CAAAAAGAGAAACTACCAAG+TGG | - | chr6_4:87935964-87935983 | None:intergenic | 35.0% | |
| !! | CACTTGGTAGTTTCTCTTTT+TGG | + | chr6_4:87935962-87935981 | Msa1002330:CDS | 35.0% |
| ATATCAACACCAAATCCAGA+AGG | - | chr6_4:87936018-87936037 | None:intergenic | 35.0% | |
| ! | ATTGATTTCACTTTGAGCTG+AGG | - | chr6_4:87936059-87936078 | None:intergenic | 35.0% |
| TGTTATGTGCAGATCAAGAT+GGG | + | chr6_4:87936161-87936180 | Msa1002330:CDS | 35.0% | |
| ATGGGAACAAATCATTGTCA+TGG | + | chr6_4:87936179-87936198 | Msa1002330:CDS | 35.0% | |
| TTCATGTCACATAACCTTGT+CGG | + | chr6_4:87936312-87936331 | Msa1002330:intron | 35.0% | |
| !!! | TACAAATACATTTTAGGGCG+TGG | - | chr6_4:87936365-87936384 | None:intergenic | 35.0% |
| ACGCCCTAAAATGTATTTGT+AGG | + | chr6_4:87936364-87936383 | Msa1002330:intron | 35.0% | |
| ! | GCAGCCTACAAATACATTTT+AGG | - | chr6_4:87936371-87936390 | None:intergenic | 35.0% |
| AGAAGAAAAAGTTCAGATGG+TGG | - | chr6_4:87936396-87936415 | None:intergenic | 35.0% | |
| GATTCAATTCTACCTCTCAA+TGG | - | chr6_4:87936480-87936499 | None:intergenic | 35.0% | |
| !!! | CTGATTTTTGGGTCAACTTT+AGG | + | chr6_4:87936558-87936577 | Msa1002330:intron | 35.0% |
| ! | GTAGCCTATAGAGACATTTT+AGG | - | chr6_4:87936631-87936650 | None:intergenic | 35.0% |
| AGAGATTCGTCATTTACTCA+TGG | - | chr6_4:87936890-87936909 | None:intergenic | 35.0% | |
| ACCACTATTACAACACCACT+TGG | + | chr6_4:87935946-87935965 | Msa1002330:CDS | 40.0% | |
| !! | ACCAAGTGGTGTTGTAATAG+TGG | - | chr6_4:87935950-87935969 | None:intergenic | 40.0% |
| ! | GTTGAAGCAACTTTTCCTTC+TGG | + | chr6_4:87936000-87936019 | Msa1002330:CDS | 40.0% |
| ! | GCAACTTTTCCTTCTGGATT+TGG | + | chr6_4:87936006-87936025 | Msa1002330:CDS | 40.0% |
| GTGTTATGTGCAGATCAAGA+TGG | + | chr6_4:87936160-87936179 | Msa1002330:CDS | 40.0% | |
| TTGTCATGGCGAAGCAAATA+TGG | + | chr6_4:87936193-87936212 | Msa1002330:CDS | 40.0% | |
| ATGGCGAAGCAAATATGGTT+GGG | + | chr6_4:87936198-87936217 | Msa1002330:CDS | 40.0% | |
| TCAATTCTACCTCTCAATGG+TGG | - | chr6_4:87936477-87936496 | None:intergenic | 40.0% | |
| ACGCCCTAAAATGTCTCTAT+AGG | + | chr6_4:87936624-87936643 | Msa1002330:intron | 40.0% | |
| AGGTGACAAACAGAGATAGT+GGG | + | chr6_4:87936967-87936986 | Msa1002330:intron | 40.0% | |
| !! | AAACAGAGATAGTGGGAGTA+CGG | + | chr6_4:87936974-87936993 | Msa1002330:CDS | 40.0% |
| !! | ATTGTTGATGACTGTAGCCA+TGG | + | chr6_4:87937035-87937054 | Msa1002330:CDS | 40.0% |
| CAAATTCATAATCCACCACG+AGG | - | chr6_4:87937130-87937149 | None:intergenic | 40.0% | |
| ACCACTATTACAACACCACT+TGG | + | chr6_4:87935946-87935965 | Msa1002330:CDS | 40.0% | |
| !! | ACCAAGTGGTGTTGTAATAG+TGG | - | chr6_4:87935950-87935969 | None:intergenic | 40.0% |
| ! | GTTGAAGCAACTTTTCCTTC+TGG | + | chr6_4:87936000-87936019 | Msa1002330:CDS | 40.0% |
| ! | GCAACTTTTCCTTCTGGATT+TGG | + | chr6_4:87936006-87936025 | Msa1002330:CDS | 40.0% |
| GTGTTATGTGCAGATCAAGA+TGG | + | chr6_4:87936160-87936179 | Msa1002330:CDS | 40.0% | |
| TTGTCATGGCGAAGCAAATA+TGG | + | chr6_4:87936193-87936212 | Msa1002330:CDS | 40.0% | |
| ATGGCGAAGCAAATATGGTT+GGG | + | chr6_4:87936198-87936217 | Msa1002330:CDS | 40.0% | |
| TCAATTCTACCTCTCAATGG+TGG | - | chr6_4:87936477-87936496 | None:intergenic | 40.0% | |
| ACGCCCTAAAATGTCTCTAT+AGG | + | chr6_4:87936624-87936643 | Msa1002330:intron | 40.0% | |
| AGGTGACAAACAGAGATAGT+GGG | + | chr6_4:87936967-87936986 | Msa1002330:intron | 40.0% | |
| !! | AAACAGAGATAGTGGGAGTA+CGG | + | chr6_4:87936974-87936993 | Msa1002330:CDS | 40.0% |
| !! | ATTGTTGATGACTGTAGCCA+TGG | + | chr6_4:87937035-87937054 | Msa1002330:CDS | 40.0% |
| CAAATTCATAATCCACCACG+AGG | - | chr6_4:87937130-87937149 | None:intergenic | 40.0% | |
| AAGTGGGACTTGAACACATC+AGG | + | chr6_4:87936136-87936155 | Msa1002330:CDS | 45.0% | |
| CATGGCGAAGCAAATATGGT+TGG | + | chr6_4:87936197-87936216 | Msa1002330:CDS | 45.0% | |
| GCTTAGCCATACACCACAAA+AGG | - | chr6_4:87936227-87936246 | None:intergenic | 45.0% | |
| TGGCTAAGCAAAGATGCTTG+TGG | + | chr6_4:87936238-87936257 | Msa1002330:CDS | 45.0% | |
| TGATGTGTGAGATTCCGACA+AGG | - | chr6_4:87936329-87936348 | None:intergenic | 45.0% | |
| TGTCGGAATCTCACACATCA+TGG | + | chr6_4:87936329-87936348 | Msa1002330:intron | 45.0% | |
| GTCGGAATCTCACACATCAT+GGG | + | chr6_4:87936330-87936349 | Msa1002330:intron | 45.0% | |
| CAGGTGACAAACAGAGATAG+TGG | + | chr6_4:87936966-87936985 | Msa1002330:intron | 45.0% | |
| ! | TTGATGACTGTAGCCATGGA+GGG | + | chr6_4:87937039-87937058 | Msa1002330:CDS | 45.0% |
| AAGCTTGACATCAGTGGGTA+TGG | + | chr6_4:87937089-87937108 | Msa1002330:CDS | 45.0% | |
| AGCTTGACATCAGTGGGTAT+GGG | + | chr6_4:87937090-87937109 | Msa1002330:CDS | 45.0% | |
| AAGTGGGACTTGAACACATC+AGG | + | chr6_4:87936136-87936155 | Msa1002330:CDS | 45.0% | |
| CATGGCGAAGCAAATATGGT+TGG | + | chr6_4:87936197-87936216 | Msa1002330:CDS | 45.0% | |
| GCTTAGCCATACACCACAAA+AGG | - | chr6_4:87936227-87936246 | None:intergenic | 45.0% | |
| TGGCTAAGCAAAGATGCTTG+TGG | + | chr6_4:87936238-87936257 | Msa1002330:CDS | 45.0% | |
| TGATGTGTGAGATTCCGACA+AGG | - | chr6_4:87936329-87936348 | None:intergenic | 45.0% | |
| TGTCGGAATCTCACACATCA+TGG | + | chr6_4:87936329-87936348 | Msa1002330:intron | 45.0% | |
| GTCGGAATCTCACACATCAT+GGG | + | chr6_4:87936330-87936349 | Msa1002330:intron | 45.0% | |
| CAGGTGACAAACAGAGATAG+TGG | + | chr6_4:87936966-87936985 | Msa1002330:intron | 45.0% | |
| ! | TTGATGACTGTAGCCATGGA+GGG | + | chr6_4:87937039-87937058 | Msa1002330:CDS | 45.0% |
| AAGCTTGACATCAGTGGGTA+TGG | + | chr6_4:87937089-87937108 | Msa1002330:CDS | 45.0% | |
| AGCTTGACATCAGTGGGTAT+GGG | + | chr6_4:87937090-87937109 | Msa1002330:CDS | 45.0% | |
| ! | TATGGTTGGGCTGCCTTTTG+TGG | + | chr6_4:87936211-87936230 | Msa1002330:CDS | 50.0% |
| !! | GTTGATGACTGTAGCCATGG+AGG | + | chr6_4:87937038-87937057 | Msa1002330:CDS | 50.0% |
| TATCCAAGTCAAGCCCTCCA+TGG | - | chr6_4:87937055-87937074 | None:intergenic | 50.0% | |
| AGTGGGTATGGGATGTCTCA+AGG | + | chr6_4:87937101-87937120 | Msa1002330:CDS | 50.0% | |
| GATGTCTCAAGGTTACCTCG+TGG | + | chr6_4:87937112-87937131 | Msa1002330:CDS | 50.0% | |
| ! | TATGGTTGGGCTGCCTTTTG+TGG | + | chr6_4:87936211-87936230 | Msa1002330:CDS | 50.0% |
| !! | GTTGATGACTGTAGCCATGG+AGG | + | chr6_4:87937038-87937057 | Msa1002330:CDS | 50.0% |
| TATCCAAGTCAAGCCCTCCA+TGG | - | chr6_4:87937055-87937074 | None:intergenic | 50.0% | |
| AGTGGGTATGGGATGTCTCA+AGG | + | chr6_4:87937101-87937120 | Msa1002330:CDS | 50.0% | |
| GATGTCTCAAGGTTACCTCG+TGG | + | chr6_4:87937112-87937131 | Msa1002330:CDS | 50.0% | |
| ! | GGGCTGCCTTTTGTGGTGTA+TGG | + | chr6_4:87936218-87936237 | Msa1002330:CDS | 55.0% |
| TAGCCATGGAGGGCTTGACT+TGG | + | chr6_4:87937049-87937068 | Msa1002330:CDS | 55.0% | |
| GTCTCAAGGTTACCTCGTGG+TGG | + | chr6_4:87937115-87937134 | Msa1002330:CDS | 55.0% | |
| ! | GGGCTGCCTTTTGTGGTGTA+TGG | + | chr6_4:87936218-87936237 | Msa1002330:CDS | 55.0% |
| TAGCCATGGAGGGCTTGACT+TGG | + | chr6_4:87937049-87937068 | Msa1002330:CDS | 55.0% | |
| GTCTCAAGGTTACCTCGTGG+TGG | + | chr6_4:87937115-87937134 | Msa1002330:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 87935899 | 87937196 | 87935899 | ID=Msa1002330;Name=Msa1002330 |
| chr6_4 | mRNA | 87935899 | 87937196 | 87935899 | ID=Msa1002330-mRNA-1;Parent=Msa1002330;Name=Msa1002330-mRNA-1;_AED=0.03;_eAED=0.03;_QI=18|1|0.5|1|1|1|2|0|194 |
| chr6_4 | exon | 87935899 | 87936273 | 87935899 | ID=Msa1002330-mRNA-1:exon:17119;Parent=Msa1002330-mRNA-1 |
| chr6_4 | exon | 87936969 | 87937196 | 87936969 | ID=Msa1002330-mRNA-1:exon:17120;Parent=Msa1002330-mRNA-1 |
| chr6_4 | five_prime_UTR | 87935899 | 87935916 | 87935899 | ID=Msa1002330-mRNA-1:five_prime_utr;Parent=Msa1002330-mRNA-1 |
| chr6_4 | CDS | 87935917 | 87936273 | 87935917 | ID=Msa1002330-mRNA-1:cds;Parent=Msa1002330-mRNA-1 |
| chr6_4 | CDS | 87936969 | 87937196 | 87936969 | ID=Msa1002330-mRNA-1:cds;Parent=Msa1002330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
