AlfalfaGEDB | Msa0266200

M. sativa cultivar zhongmu-4 / Msa0266200

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0266200	XP_003597717.2	98.176	329	6	0	1	329	1	329	0.0	667

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0266200	sp\|Q8S3D1\|BH068_ARATH	42.643	401	149	16	1	329	15	406	3.02e-69	224

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0266200	G7IUP4	98.176	329	6	0	1	329	1	329	0.0	667

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0266200	0.808197	3.485723e-50	-8.615850e-47
Msa0001940	Msa0266200	0.802102	6.577852e-49	-8.615850e-47
Msa0006110	Msa0266200	0.814647	1.385008e-51	-8.615850e-47
Msa0017950	Msa0266200	0.803525	3.344219e-49	-8.615850e-47
Msa0023330	Msa0266200	0.811671	6.230745e-51	-8.615850e-47
Msa0036140	Msa0266200	0.817452	3.274085e-52	-8.615850e-47
Msa0044090	Msa0266200	0.832487	9.191271e-56	-8.615850e-47
Msa0050820	Msa0266200	0.806813	6.854841e-50	-8.615850e-47
Msa0054480	Msa0266200	0.804861	1.762822e-49	-8.615850e-47
Msa0077400	Msa0266200	0.801619	8.268063e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0266200	MtrunA17_Chr2g0331431	98.176	329	6	0	1	329	1	329	0.0	667
Msa0266200	MtrunA17_Chr6g0486111	47.688	346	127	10	1	329	14	322	4.85e-88	267
Msa0266200	MtrunA17_Chr8g0390301	47.578	351	132	12	1	329	15	335	2.53e-76	237
Msa0266200	MtrunA17_Chr2g0318971	47.368	152	49	3	175	326	313	433	2.38e-34	130
Msa0266200	MtrunA17_Chr2g0280631	45.625	160	55	3	167	326	283	410	3.55e-32	124
Msa0266200	MtrunA17_Chr1g0207771	45.695	151	60	3	175	324	141	270	6.16e-32	120
Msa0266200	MtrunA17_Chr8g0361501	46.452	155	52	3	175	329	320	443	3.03e-31	122
Msa0266200	MtrunA17_Chr3g0141841	45.390	141	47	4	188	326	339	451	7.49e-30	118
Msa0266200	MtrunA17_Chr4g0045561	44.444	135	35	2	189	323	56	150	1.02e-26	103
Msa0266200	MtrunA17_Chr1g0199091	42.208	154	55	4	175	325	405	527	3.75e-26	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0266200	AT4G29100.1	42.643	401	149	16	1	329	15	406	3.07e-70	224
Msa0266200	AT2G20100.1	59.322	177	58	4	163	329	189	361	6.33e-60	196
Msa0266200	AT2G20100.3	47.085	223	58	5	163	329	189	407	7.97e-51	174
Msa0266200	AT4G29100.2	39.349	338	128	14	1	270	15	343	5.98e-43	152
Msa0266200	AT2G20100.4	64.035	114	31	3	163	270	189	298	2.08e-36	134
Msa0266200	AT2G20100.2	64.035	114	31	3	163	270	189	298	2.08e-36	134
Msa0266200	AT1G27660.1	47.904	167	46	6	173	328	316	452	9.58e-34	129
Msa0266200	AT3G19500.1	48.000	150	45	3	175	324	140	256	9.92e-33	122
Msa0266200	AT3G20640.4	43.871	155	55	3	175	329	269	391	1.05e-30	120
Msa0266200	AT3G20640.1	43.871	155	55	3	175	329	331	453	2.29e-30	120

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Find 106 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAAGAATACCTGGTT+TGG	0.370691	2_2:-66637401	None:intergenic
AACTACTGGAGTTAATAAGA+AGG	0.572553	2_2:+66635941	Msa0266200:CDS
AAGAATACCTGGTTTGGAAT+TGG	0.331532	2_2:-66637395	None:intergenic
AAGCTAGTGATATGAGAGCT+TGG	0.469144	2_2:-66635658	None:intergenic
AATACATTTAAACAAAAGAA+GGG	0.567562	2_2:-66638220	None:intergenic
AATTAACCTTTAGAGGTGGT+TGG	0.534058	2_2:-66635986	None:intergenic
AATTTAATTAGATCAGAGAG+AGG	0.626594	2_2:-66638097	None:intergenic
ACAAGGAAATATCATCACAA+AGG	0.676273	2_2:+66634833	Msa0266200:five_prime_UTR
ACAGAATGCAGAAGGTAATA+AGG	0.336565	2_2:+66637813	Msa0266200:intron
ACATGTTGTGTGCATGACAC+TGG	0.568881	2_2:-66637871	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGGAAATATCATCACAA+AGG	+	chr2_2:66634833-66634852	Msa0266200:five_prime_UTR	30.0%
TGATATATGTGTAAGGACTA+AGG	-	chr2_2:66634952-66634971	None:intergenic	30.0%
AGTCTCATGATATATGTGTA+AGG	-	chr2_2:66634959-66634978	None:intergenic	30.0%
TTTCTGTCAAGGAATTGAAA+GGG	-	chr2_2:66635086-66635105	None:intergenic	30.0%
AACCTAAAAACTCAGAAAAC+TGG	+	chr2_2:66635464-66635483	Msa0266200:CDS	30.0%
ACCTAAAAACTCAGAAAACT+GGG	+	chr2_2:66635465-66635484	Msa0266200:CDS	30.0%
ATAAAGCATGAAGTTTCTCA+AGG	+	chr2_2:66635535-66635554	Msa0266200:CDS	30.0%
ATTGGATTTCACTTACAACA+AGG	+	chr2_2:66635696-66635715	Msa0266200:CDS	30.0%
TTTACCTCAGATATTTGATC+TGG	-	chr2_2:66635745-66635764	None:intergenic	30.0%
AACTACTGGAGTTAATAAGA+AGG	+	chr2_2:66635941-66635960	Msa0266200:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	66634741	66638278	66634741	ID=Msa0266200;Name=Msa0266200
chr2_2	mRNA	66634741	66638278	66634741	ID=Msa0266200-mRNA-1;Parent=Msa0266200;Name=Msa0266200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=256\|1\|1\|1\|1\|1\|9\|330\|329
chr2_2	exon	66634741	66635148	66634741	ID=Msa0266200-mRNA-1:exon:21195;Parent=Msa0266200-mRNA-1
chr2_2	exon	66635417	66635759	66635417	ID=Msa0266200-mRNA-1:exon:21196;Parent=Msa0266200-mRNA-1
chr2_2	exon	66635930	66636001	66635930	ID=Msa0266200-mRNA-1:exon:21197;Parent=Msa0266200-mRNA-1
chr2_2	exon	66636269	66636334	66636269	ID=Msa0266200-mRNA-1:exon:21198;Parent=Msa0266200-mRNA-1
chr2_2	exon	66636558	66636623	66636558	ID=Msa0266200-mRNA-1:exon:21199;Parent=Msa0266200-mRNA-1
chr2_2	exon	66636796	66636858	66636796	ID=Msa0266200-mRNA-1:exon:21200;Parent=Msa0266200-mRNA-1
chr2_2	exon	66637027	66637071	66637027	ID=Msa0266200-mRNA-1:exon:21201;Parent=Msa0266200-mRNA-1
chr2_2	exon	66637359	66637409	66637359	ID=Msa0266200-mRNA-1:exon:21202;Parent=Msa0266200-mRNA-1
chr2_2	exon	66637817	66638278	66637817	ID=Msa0266200-mRNA-1:exon:21203;Parent=Msa0266200-mRNA-1
chr2_2	five_prime_UTR	66634741	66634996	66634741	ID=Msa0266200-mRNA-1:five_prime_utr;Parent=Msa0266200-mRNA-1
chr2_2	CDS	66634997	66635148	66634997	ID=Msa0266200-mRNA-1:cds;Parent=Msa0266200-mRNA-1
chr2_2	CDS	66635417	66635759	66635417	ID=Msa0266200-mRNA-1:cds;Parent=Msa0266200-mRNA-1
chr2_2	CDS	66635930	66636001	66635930	ID=Msa0266200-mRNA-1:cds;Parent=Msa0266200-mRNA-1
chr2_2	CDS	66636269	66636334	66636269	ID=Msa0266200-mRNA-1:cds;Parent=Msa0266200-mRNA-1
chr2_2	CDS	66636558	66636623	66636558	ID=Msa0266200-mRNA-1:cds;Parent=Msa0266200-mRNA-1
chr2_2	CDS	66636796	66636858	66636796	ID=Msa0266200-mRNA-1:cds;Parent=Msa0266200-mRNA-1
chr2_2	CDS	66637027	66637071	66637027	ID=Msa0266200-mRNA-1:cds;Parent=Msa0266200-mRNA-1
chr2_2	CDS	66637359	66637409	66637359	ID=Msa0266200-mRNA-1:cds;Parent=Msa0266200-mRNA-1
chr2_2	CDS	66637817	66637948	66637817	ID=Msa0266200-mRNA-1:cds;Parent=Msa0266200-mRNA-1
chr2_2	three_prime_UTR	66637949	66638278	66637949	ID=Msa0266200-mRNA-1:three_prime_utr;Parent=Msa0266200-mRNA-1

Gene Sequence

>Msa0266200

ATGATGGCTGGGAACCCTAACTGGTGGAGCATGCATCCATCATCTTTGAATATCCCTCCTCAATATATGCTTGGATCTTCTTCAATCCCTTTCAATTCCTTGACAGAAAATAATGCTGAAGTACCTCCTCAATCATGGAGTCAACTACTTTTTACTGGACTACCTGGTGAAGAAGAGAGACTTGGTTTTAATCATTTTCAACCTAAAAACTCAGAAAACTGGGATGTGCAAATTATGAATCCATCTTCAAGAGTTCCATCTATGGATATAATAAAGCATGAAGTTTCTCAAGGTGAGAATTTTTATGGTCAACAAGGGCATCATCCTGAGGAGTTTCGTGCTAACTCTGGATCACTTGGTTCATCTTGGTCACATATGGTGCCAGTTTCTTCCCCAAGCTCTCATATCACTAGCTTAAGTAGTGATAATATATTGGATTTCACTTACAACAAGGTAGATCATAGCAAGAATCAACTACCAGATCAAATATCTGAGTGTAATAGCTCAACTACTGGAGTTAATAAGAAGGCTAGGGTTCAGCCATCTTCAAGCCAACCACCTCTAAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAGCTAGTTTCTCCATTTGGAAAGACTGACACAGCTTCTGTATTATTAGAAGCCATTGGATACATCAGGTTTCTACAGAGTCAAATTGAGGCACTCAGCACCCCTTACTTGGACACTGCAGCATCAAAAAACATGATGAGGAATCAACATTCTGTGCATGTTGAAAGAAATTCTGTATTTCCTGAAGACCCCGGTCAGCTGTTGGATGACACTGGCCTAAAAAGAAAGAGCGCTCCAATTCCAAACCAGAATGCAGAAGGTAATAAGGCAAAGAACTTGAAGAGTAGAGGGTTGTGCTTGGTTCCAGTGTCATGCACACAACATGTTGGAAGTGAAAATGGAGCTGATTACTGGGCACCAGCATTTGGAAGTGGGTTTTAA

Protein sequence

>Msa0266200

MMAGNPNWWSMHPSSLNIPPQYMLGSSSIPFNSLTENNAEVPPQSWSQLLFTGLPGEEERLGFNHFQPKNSENWDVQIMNPSSRVPSMDIIKHEVSQGENFYGQQGHHPEEFRANSGSLGSSWSHMVPVSSPSSHITSLSSDNILDFTYNKVDHSKNQLPDQISECNSSTTGVNKKARVQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSTPYLDTAASKNMMRNQHSVHVERNSVFPEDPGQLLDDTGLKRKSAPIPNQNAEGNKAKNLKSRGLCLVPVSCTQHVGSENGADYWAPAFGSGF*