AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0012940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012940 MtrunA17_Chr1g0162021 97.264 658 18 0 1 658 1 658 0.0 1326
Msa0012940 MtrunA17_Chr1g0162051 68.650 437 112 7 238 658 1 428 0.0 587
Msa0012940 MtrunA17_Chr1g0162041 74.874 199 37 2 1 199 1 186 2.38e-100 304
Msa0012940 MtrunA17_Chr1g0196531 31.227 538 272 17 46 564 38 496 3.69e-68 231
Msa0012940 MtrunA17_Chr7g0259341 30.849 577 294 23 42 598 23 514 1.69e-64 221
Msa0012940 MtrunA17_Chr1g0150581 29.526 359 214 13 140 479 65 403 8.15e-34 135
Msa0012940 MtrunA17_Chr2g0277921 30.450 289 179 9 222 490 153 439 5.19e-32 130
Msa0012940 MtrunA17_Chr2g0277881 30.196 255 169 5 222 469 19 271 1.68e-29 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012940 AT1G14710.2 45.942 616 265 18 1 589 1 575 8.77e-163 480
Msa0012940 AT1G14710.1 45.942 616 265 18 1 589 1 575 8.77e-163 480
Msa0012940 AT4G02940.1 31.239 557 314 17 46 581 47 555 2.72e-64 223
Msa0012940 AT2G48080.1 32.509 283 172 6 213 489 117 386 1.14e-38 149
Msa0012940 AT2G48080.1 31.319 182 104 5 46 209 23 201 8.79e-17 84.0
Msa0012940 AT2G17970.9 34.454 238 143 5 252 477 123 359 8.31e-35 137
Msa0012940 AT2G17970.2 34.454 238 143 5 252 477 123 359 8.31e-35 137
Msa0012940 AT2G17970.3 34.454 238 143 5 252 477 123 359 8.31e-35 137
Msa0012940 AT2G17970.10 34.454 238 143 5 252 477 114 350 1.32e-34 137
Msa0012940 AT2G17970.5 34.454 238 143 5 252 477 156 392 1.33e-34 137
Msa0012940 AT2G17970.7 34.454 238 143 5 252 477 156 392 1.33e-34 137
Msa0012940 AT2G17970.1 34.454 238 143 5 252 477 197 433 2.67e-34 137
Msa0012940 AT1G48980.2 33.203 256 151 7 222 466 50 296 6.04e-33 130
Msa0012940 AT1G48980.1 33.203 256 151 7 222 466 54 300 6.38e-33 130
Msa0012940 AT2G17970.4 34.597 211 130 4 252 455 123 332 1.64e-32 129
Msa0012940 AT2G17970.8 34.597 211 130 4 252 455 197 406 7.40e-32 128
Msa0012940 AT4G36090.2 32.389 247 154 6 252 486 133 378 1.74e-31 128
Msa0012940 AT4G36090.3 32.389 247 154 6 252 486 201 446 4.81e-31 128
Msa0012940 AT1G48980.3 32.787 244 144 7 222 454 54 288 2.61e-30 122
Msa0012940 AT4G36090.5 33.333 210 132 4 252 454 201 409 1.78e-28 119
Msa0012940 AT2G17970.6 33.333 186 116 4 252 430 197 381 4.20e-23 102
Msa0012940 AT4G36090.4 33.511 188 104 6 252 432 201 374 9.89e-21 95.1
Msa0012940 AT4G36090.1 33.511 188 104 6 252 432 201 374 9.89e-21 95.1

Find 196 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCTTCCATGTCCTCTTA+TGG 0.176074 1_1:-19956712 None:intergenic
GTTCATTGGTCAATGATTTA+AGG 0.182023 1_1:+19955682 Msa0012940:CDS
ACCTCTACGATAAAGGAAAA+TGG 0.206612 1_1:+19959072 Msa0012940:CDS
GGGAAGGATGTATAACATTT+TGG 0.220996 1_1:+19959378 Msa0012940:three_prime_UTR
TTCAGCAGAGGAGGGTTAAT+TGG 0.239558 1_1:+19953860 Msa0012940:CDS
GTCAGCATTTAGGTGTTATT+GGG 0.268959 1_1:+19953803 Msa0012940:CDS
CATTTGTCTCAGAGCACTTT+GGG 0.274989 1_1:+19957202 Msa0012940:CDS
TGTCAGCATTTAGGTGTTAT+TGG 0.294663 1_1:+19953802 Msa0012940:CDS
GTGAGATCTACGAATGAAAA+AGG 0.301352 1_1:-19953406 None:intergenic
ACTGAATGTGACATGACTTT+TGG 0.308787 1_1:+19957174 Msa0012940:CDS
TCTCTTCCATGTCCTCTTAT+GGG 0.320704 1_1:-19956711 None:intergenic
TATTCTGCTGTTCAAGTAAC+CGG 0.321185 1_1:+19958784 Msa0012940:CDS
ATTTCCCTTGCATCACTAGA+AGG 0.334442 1_1:-19958567 None:intergenic
GCCGGAAAATGCTTAATTTC+CGG 0.334696 1_1:-19953631 None:intergenic
AGAGAGATGGGTTTATGAAT+TGG 0.335350 1_1:+19953734 Msa0012940:CDS
AACATTTGGCCGTCTTCATT+TGG 0.344951 1_1:+19957126 Msa0012940:CDS
GTCAATGATTTAAGGGTTGC+TGG 0.346194 1_1:+19955690 Msa0012940:CDS
TTCATTGGTCAATGATTTAA+GGG 0.347438 1_1:+19955683 Msa0012940:CDS
TGGTGGCAAAGTTGGATATA+AGG 0.350502 1_1:+19954140 Msa0012940:CDS
GATTGTTTGTGTCAGCATTT+AGG 0.352627 1_1:+19953793 Msa0012940:CDS
AACAATGGCTGCATGCTATT+AGG 0.355623 1_1:-19958838 None:intergenic
AGTTTCAAAACTTGGTTCAT+TGG 0.358902 1_1:+19955668 Msa0012940:CDS
ATCTCTCTCTAATCTCTCAT+TGG 0.361935 1_1:-19959245 None:intergenic
ATGCGTTGTTTGTGAATAGA+AGG 0.371926 1_1:-19958616 None:intergenic
GAACAGGCTATAGAGGAAAA+AGG 0.372518 1_1:+19959195 Msa0012940:CDS
GTTTGTGAAGCCGGTTGTTA+AGG 0.375526 1_1:+19953969 Msa0012940:CDS
AATTCCAACCTCTACGATAA+AGG 0.375623 1_1:+19959065 Msa0012940:CDS
AATGAAGACGGCCAAATGTT+TGG 0.380699 1_1:-19957123 None:intergenic
CCAATCCCGCCTGGCTCTAC+AGG 0.389178 1_1:+19958907 Msa0012940:CDS
ACCACTCAACGCCAAACATT+TGG 0.391810 1_1:+19957112 Msa0012940:CDS
CCTCCTCGAGTCGTTGTTCC+CGG 0.394340 1_1:+19958958 Msa0012940:CDS
CTTCAGGTTAATGTTGTTGA+AGG 0.394691 1_1:+19955609 Msa0012940:intron
GTTAAATCTGGTGGCAAAGT+TGG 0.395532 1_1:+19954132 Msa0012940:CDS
TTCCTAAACTCCTTAACAAC+CGG 0.401772 1_1:-19953979 None:intergenic
CCTGTAGAGCCAGGCGGGAT+TGG 0.404095 1_1:-19958907 None:intergenic
TGCAGCAGGTGGCGTGGAGG+CGG 0.410514 1_1:+19953938 Msa0012940:CDS
TACCTTAACTGAAGTGAACT+TGG 0.411064 1_1:+19959035 Msa0012940:CDS
AGCAATGTCAAGCTTTCTCT+TGG 0.412536 1_1:+19957234 Msa0012940:CDS
GCAGCAGAGGTTTGTGAAGC+CGG 0.415066 1_1:+19953960 Msa0012940:CDS
CACAGGTGTAGCAAATTGTA+TGG 0.416248 1_1:-19958884 None:intergenic
ACCCAAGTTCACTTCAGTTA+AGG 0.419432 1_1:-19959037 None:intergenic
AATTGTATGGGAGTTGCAAC+TGG 0.420597 1_1:-19958871 None:intergenic
GTAATGAGAAGAAAGGAGTT+TGG 0.422020 1_1:-19953357 None:intergenic
TTAAGGGTTGCTGGAAGAAA+AGG 0.425939 1_1:+19955699 Msa0012940:CDS
AGCCGGTTGTTAAGGAGTTT+AGG 0.431475 1_1:+19953977 Msa0012940:CDS
AGTACTGAAGTTTCAAAACT+TGG 0.433213 1_1:+19955660 Msa0012940:CDS
TCTAATCATAGCAATACTAA+TGG 0.437415 1_1:+19959099 Msa0012940:CDS
AAGAGTGAAGAAGTTAAATC+TGG 0.439367 1_1:+19954120 Msa0012940:CDS
CCTCTACGATAAAGGAAAAT+GGG 0.441941 1_1:+19959073 Msa0012940:CDS
GTTAGCAATGAGATGTTTGA+TGG 0.442976 1_1:+19955458 Msa0012940:CDS
ACATTGTCCACGTCAGCAAT+TGG 0.447329 1_1:-19956753 None:intergenic
TGAAGTTGAACAGGCTATAG+AGG 0.449054 1_1:+19959188 Msa0012940:CDS
TGCTGCTGTTGCTGTGGTGG+TGG 0.450073 1_1:-19953685 None:intergenic
ATATGATTCGGAGATCTGTT+TGG 0.450319 1_1:-19958733 None:intergenic
GTCAGGAAAAGCGTATAAAC+AGG 0.452435 1_1:-19957153 None:intergenic
TCACCAAAAGGTAAAATGAA+TGG 0.458597 1_1:+19959123 Msa0012940:CDS
ATGGGAGTTGCAACTGGCGC+TGG 0.459514 1_1:-19958865 None:intergenic
TTAAGGAGTTTAGGAAGGGT+AGG 0.460250 1_1:+19953986 Msa0012940:CDS
GTCAAGCTTTCTCTTGGACC+TGG 0.461574 1_1:+19957240 Msa0012940:CDS
AATACTAATGGTTCACCAAA+AGG 0.461948 1_1:+19959111 Msa0012940:CDS
AAGTGCAACTGAAGTTGAAC+AGG 0.462480 1_1:+19959179 Msa0012940:CDS
CAGAGGTTTGAGGGTGGGAA+TGG 0.465691 1_1:+19954015 Msa0012940:CDS
ACAGAATGTGCATCAAATTC+TGG 0.468027 1_1:+19954920 Msa0012940:CDS
TTGGATTCGTAGCGAATTCG+CGG 0.468773 1_1:+19953753 Msa0012940:CDS
ACAGGAGTCTTCCTTCCGCC+TGG 0.470551 1_1:+19958982 Msa0012940:CDS
ACATTTGTCTCAGAGCACTT+TGG 0.470759 1_1:+19957201 Msa0012940:CDS
TTAGGTGTTATTGGGGAGAG+TGG 0.471463 1_1:+19953811 Msa0012940:CDS
CGAGGAGGAGGATGCCTTGG+AGG 0.472071 1_1:-19958943 None:intergenic
AAATCGACGATGCAAGCATC+AGG 0.473203 1_1:-19956964 None:intergenic
TAGGCAATGGCAGAGGTTTG+AGG 0.474866 1_1:+19954005 Msa0012940:CDS
TGGCGTGGAGGCGGCAGCAG+AGG 0.475670 1_1:+19953947 Msa0012940:CDS
ACACCTGTGCCAATCCCGCC+TGG 0.477942 1_1:+19958898 Msa0012940:CDS
GGTGAGTATGATCATGTTGT+TGG 0.481124 1_1:+19953832 Msa0012940:CDS
GAAAATCATCGTCGTGGTGA+AGG 0.489467 1_1:+19954063 Msa0012940:CDS
CGGAAGGAAGACTCCTGTGC+CGG 0.489719 1_1:-19958977 None:intergenic
CATCGTCGATTTCTATAATG+AGG 0.495227 1_1:+19956975 Msa0012940:CDS
GGACGATGACTAATATGATT+CGG 0.496573 1_1:-19958745 None:intergenic
GTTTGAGGGTGGGAATGGTA+AGG 0.499098 1_1:+19954020 Msa0012940:CDS
TGTTGCTGCTGTTGCTGTGG+TGG 0.500371 1_1:-19953688 None:intergenic
CGACATATGTGGTTAACAAA+AGG 0.500536 1_1:+19956688 Msa0012940:CDS
GGTGTTACTGCATTTCCCAT+TGG 0.507593 1_1:-19953610 None:intergenic
CGAGTCGTTGTTCCCGGCAC+AGG 0.509569 1_1:+19958964 Msa0012940:CDS
AAGTCATGTCACATTCAGTC+AGG 0.512515 1_1:-19957170 None:intergenic
TCCATCCTGTAGAGCCAGGC+GGG 0.513497 1_1:-19958912 None:intergenic
GGAAGGAAGACTCCTGTGCC+GGG 0.513713 1_1:-19958976 None:intergenic
GAGCCAGGCGGGATTGGCAC+AGG 0.514193 1_1:-19958901 None:intergenic
ACTCGAGGAGGAGGATGCCT+TGG 0.514438 1_1:-19958946 None:intergenic
ACAGTCCATCCTGTAGAGCC+AGG 0.516590 1_1:-19958916 None:intergenic
AATTTCCAGAGCTCTTCAAA+AGG 0.517631 1_1:-19954877 None:intergenic
TTTCCGGCGGTGGTTACCGC+CGG 0.518436 1_1:+19953646 Msa0012940:CDS
GGAAGAAAAGGACAATTTCA+AGG 0.519573 1_1:+19955711 Msa0012940:CDS
TGAGATGAGTTAGCAGAGCC+AGG 0.521622 1_1:-19959000 None:intergenic
TCAAGTAACCGGGGTGCTGC+CGG 0.522831 1_1:+19958795 Msa0012940:CDS
AAGAGCTCTGGAAATTCTCA+AGG 0.523667 1_1:+19954884 Msa0012940:CDS
GAGGGTGGGAATGGTAAGGA+AGG 0.523988 1_1:+19954024 Msa0012940:CDS
TTGAACAGCAGAATAATGCT+TGG 0.524124 1_1:-19958776 None:intergenic
TGCGTACGCGTTGCAGCAGG+TGG 0.527248 1_1:+19953927 Msa0012940:CDS
AACGTGAGTGGTTCCACCAC+AGG 0.529106 1_1:+19955425 Msa0012940:CDS
TGGAAGAGAGATGATTCAGT+TGG 0.529263 1_1:+19956725 Msa0012940:CDS
TGAGATGTTTGATGGGAAGA+TGG 0.533285 1_1:+19955466 Msa0012940:CDS
AGGCAATGGCAGAGGTTTGA+GGG 0.539109 1_1:+19954006 Msa0012940:CDS
GTTAACAAAAGGCCCATAAG+AGG 0.539978 1_1:+19956699 Msa0012940:CDS
TTTGGCCGTCTTCATTTGGA+AGG 0.540261 1_1:+19957130 Msa0012940:CDS
TCAAGCTTTCTCTTGGACCT+GGG 0.542395 1_1:+19957241 Msa0012940:CDS
AATGTGACAGCGTCGTTCAA+AGG 0.545588 1_1:+19956771 Msa0012940:CDS
GGTTGCGTACGCGTTGCAGC+AGG 0.545735 1_1:+19953924 Msa0012940:CDS
TGAACAGCAGAATAATGCTT+GGG 0.545822 1_1:-19958775 None:intergenic
ATTCTGCTGTTCAAGTAACC+GGG 0.548410 1_1:+19958785 Msa0012940:CDS
GGTTTGTTGATGAGAGAGAT+GGG 0.550236 1_1:+19953722 Msa0012940:CDS
CTCAATGATATCTTGAAACA+AGG 0.552597 1_1:-19956908 None:intergenic
TCAAGATATCATTGAGCGCA+TGG 0.553274 1_1:+19956915 Msa0012940:CDS
TGATGTTGCTGCTGTTGCTG+TGG 0.554152 1_1:-19953691 None:intergenic
TTGTTGAGTAATGAGAAGAA+AGG 0.554371 1_1:-19953364 None:intergenic
TTCGGAGATCTGTTTGGTGC+GGG 0.555113 1_1:-19958727 None:intergenic
GGAAGAGAGATGATTCAGTT+GGG 0.559430 1_1:+19956726 Msa0012940:CDS
TGGTTTGTTGATGAGAGAGA+TGG 0.561608 1_1:+19953721 Msa0012940:CDS
TGCTATTAGGAGCAACATGT+AGG 0.561743 1_1:-19958825 None:intergenic
GCCAAATGTTTGGCGTTGAG+TGG 0.562418 1_1:-19957113 None:intergenic
AATGAGAGATTAGAGAGAGA+TGG 0.562454 1_1:+19959247 Msa0012940:exon
TTGGTGCAATTCAGCAGAGG+AGG 0.562955 1_1:+19953851 Msa0012940:CDS
AAAATCATCGTCGTGGTGAA+GGG 0.566281 1_1:+19954064 Msa0012940:CDS
GGAAGGGTAGGCAATGGCAG+AGG 0.566349 1_1:+19953998 Msa0012940:CDS
TCCCGCCTGGCTCTACAGGA+TGG 0.566829 1_1:+19958911 Msa0012940:CDS
GGTTGTTAAGGAGTTTAGGA+AGG 0.567040 1_1:+19953981 Msa0012940:CDS
GGAACAACGACTCGAGGAGG+AGG 0.567084 1_1:-19958955 None:intergenic
AGAGATGGAAAGCTTATCAA+AGG 0.567468 1_1:+19959262 Msa0012940:three_prime_UTR
TTTCCCTTGCATCACTAGAA+GGG 0.569855 1_1:-19958566 None:intergenic
CTCCGTCAGCAACTTCACAT+TGG 0.570942 1_1:+19958701 Msa0012940:CDS
GAATAATGCTTGGGAGCTAA+CGG 0.572073 1_1:-19958766 None:intergenic
GACACTGCTGAGGAGAAGAA+AGG 0.574319 1_1:+19954177 Msa0012940:CDS
TCACCGGCGGTAACCACCGC+CGG 0.577073 1_1:-19953649 None:intergenic
GATGGACTGTGGCTCCTCCA+AGG 0.578865 1_1:+19958929 Msa0012940:CDS
TCAGCATTTAGGTGTTATTG+GGG 0.581125 1_1:+19953804 Msa0012940:CDS
GGAATGGAACTAACAAAGGA+AGG 0.582272 1_1:-19959414 None:intergenic
AGTTAGCAGAGCCAGGCGGA+AGG 0.584884 1_1:-19958993 None:intergenic
GCAAGACCTTGAGCATCACT+TGG 0.587423 1_1:-19958679 None:intergenic
ACTGGCGCTGGGACAAACAA+TGG 0.587978 1_1:-19958853 None:intergenic
CAAAATGTAAAGAGCGGCAA+CGG 0.588999 1_1:+19959321 Msa0012940:three_prime_UTR
ACGCGTTGCAGCAGGTGGCG+TGG 0.589277 1_1:+19953932 Msa0012940:CDS
GATATAACATTATACTGCAA+AGG 0.592804 1_1:+19959346 Msa0012940:three_prime_UTR
ATGATATCTTGAAACAAGGA+AGG 0.593091 1_1:-19956904 None:intergenic
GCTATTAGGAGCAACATGTA+GGG 0.594317 1_1:-19958824 None:intergenic
GCAACATGTAGGGATGGAGC+CGG 0.594320 1_1:-19958814 None:intergenic
AGTTTAGGAAGGGTAGGCAA+TGG 0.596438 1_1:+19953992 Msa0012940:CDS
AACAGGGAGTCCGACATATG+TGG 0.596795 1_1:+19956677 Msa0012940:intron
AGGTCCCTTCTAGTGATGCA+AGG 0.600287 1_1:+19958562 Msa0012940:intron
AAAAGGCCCATAAGAGGACA+TGG 0.601532 1_1:+19956705 Msa0012940:CDS
TGGGAGTTGCAACTGGCGCT+GGG 0.602477 1_1:-19958864 None:intergenic
GGTCCCTTCTAGTGATGCAA+GGG 0.605574 1_1:+19958563 Msa0012940:intron
ATACTGCAAAGGAGAGAACA+AGG 0.606432 1_1:+19959357 Msa0012940:three_prime_UTR
AGAAGGAATGGAACTAACAA+AGG 0.607159 1_1:-19959418 None:intergenic
TGGTCTGTACTGCATCTCAC+CGG 0.608831 1_1:-19953665 None:intergenic
AACTCATCTCAGCACTCACA+AGG 0.609891 1_1:+19959012 Msa0012940:CDS
GGATGGAGCCGGCAGCACCC+CGG 0.612297 1_1:-19958803 None:intergenic
AATGTAAAGAGCGGCAACGG+TGG 0.613143 1_1:+19959324 Msa0012940:three_prime_UTR
TGGTGCAATTCAGCAGAGGA+GGG 0.615294 1_1:+19953852 Msa0012940:CDS
TTAGGAGCAACATGTAGGGA+TGG 0.616506 1_1:-19958820 None:intergenic
AGTGAAGAAGTTAAATCTGG+TGG 0.616931 1_1:+19954123 Msa0012940:CDS
ACCTTAACTGAAGTGAACTT+GGG 0.617201 1_1:+19959036 Msa0012940:CDS
ACAGGTGTAGCAAATTGTAT+GGG 0.617438 1_1:-19958883 None:intergenic
AATGGCAGAGGTTTGAGGGT+GGG 0.618784 1_1:+19954010 Msa0012940:CDS
ATTCGGAGATCTGTTTGGTG+CGG 0.619364 1_1:-19958728 None:intergenic
GGGTGTTCCAATTGCTGACG+TGG 0.620031 1_1:+19956746 Msa0012940:CDS
ATTGAAAGACAAGAATGCAA+TGG 0.620535 1_1:+19959150 Msa0012940:CDS
AGGGTGGGAATGGTAAGGAA+GGG 0.630717 1_1:+19954025 Msa0012940:CDS
CAATGGCAGAGGTTTGAGGG+TGG 0.636238 1_1:+19954009 Msa0012940:CDS
TTAGCAATGAGATGTTTGAT+GGG 0.636295 1_1:+19955459 Msa0012940:CDS
GAATGTGCATCAAATTCTGG+AGG 0.638203 1_1:+19954923 Msa0012940:CDS
ACAGGCCTTCCAAATGAAGA+CGG 0.639412 1_1:-19957135 None:intergenic
GTTGTTAAGGAGTTTAGGAA+GGG 0.642734 1_1:+19953982 Msa0012940:CDS
CGTTGCAGCAGGTGGCGTGG+AGG 0.643887 1_1:+19953935 Msa0012940:CDS
AATGGGAAATGCAGTAACAC+CGG 0.644726 1_1:+19953612 Msa0012940:CDS
ATTTGTCTCAGAGCACTTTG+GGG 0.647839 1_1:+19957203 Msa0012940:CDS
AATCAACAACAGAACGTGAG+TGG 0.649122 1_1:+19955413 Msa0012940:CDS
TTGTTGGTGCAATTCAGCAG+AGG 0.652480 1_1:+19953848 Msa0012940:CDS
CCGGGAACAACGACTCGAGG+AGG 0.654433 1_1:-19958958 None:intergenic
GTGCCGGGAACAACGACTCG+AGG 0.655043 1_1:-19958961 None:intergenic
AGCAGCAACATCAACAACAA+TGG 0.658542 1_1:+19953701 Msa0012940:CDS
GAATCTGACAGATAAGAATG+TGG 0.660059 1_1:+19956873 Msa0012940:intron
TTCTGCTGTTCAAGTAACCG+GGG 0.662775 1_1:+19958786 Msa0012940:CDS
CTTAACAGACATGACTTGTG+AGG 0.663477 1_1:-19956941 None:intergenic
TAAGAATTTAGACACTGCTG+AGG 0.667493 1_1:+19954167 Msa0012940:CDS
GCAAAGGAGAGAACAAGGGA+AGG 0.672030 1_1:+19959362 Msa0012940:three_prime_UTR
TTGAAGCAAAATGTAAAGAG+CGG 0.673556 1_1:+19959315 Msa0012940:three_prime_UTR
TGCGCAAAAGAATTTAACGA+GGG 0.675641 1_1:-19959513 None:intergenic
AAAGGAAAGTGTGAAGATGG+TGG 0.677411 1_1:-19953388 None:intergenic
TCTGTACTGCATCTCACCGG+CGG 0.680815 1_1:-19953662 None:intergenic
TGGCTCTACAGGATGGACTG+TGG 0.684505 1_1:+19958918 Msa0012940:CDS
TACTGCAAAGGAGAGAACAA+GGG 0.689014 1_1:+19959358 Msa0012940:three_prime_UTR
TTAATGTTGTTGAAGGACTG+AGG 0.691860 1_1:+19955616 Msa0012940:CDS
AGTGTAGAAAATCATCGTCG+TGG 0.692889 1_1:+19954057 Msa0012940:CDS
GACCAATGTGAAGTTGCTGA+CGG 0.693407 1_1:-19958703 None:intergenic
TCTCTGCCAAGTGATGCTCA+AGG 0.700665 1_1:+19958673 Msa0012940:CDS
GATGAGTTAGCAGAGCCAGG+CGG 0.703314 1_1:-19958997 None:intergenic
ATGCGCAAAAGAATTTAACG+AGG 0.711419 1_1:-19959514 None:intergenic
GTCCATCCTGTAGAGCCAGG+CGG 0.716481 1_1:-19958913 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAATTAAAAATTA+GGG - chr1_1:19953511-19953530 None:intergenic 0.0%
!! TAATAAATAAATTAAAAATT+AGG - chr1_1:19953512-19953531 None:intergenic 0.0%
!! AAAAATAAAATAAAAAAATT+GGG - chr1_1:19956151-19956170 None:intergenic 0.0%
!!! CTTTTATATTTTATTTTATG+GGG + chr1_1:19955572-19955591 Msa0012940:intron 10.0%
!!! ATTTTATTTTTCAATATACA+AGG + chr1_1:19956160-19956179 Msa0012940:intron 10.0%
!! GACTAAATTTATTATAAAAA+AGG - chr1_1:19956304-19956323 None:intergenic 10.0%
!!! AAATATACAATTTAAAATTG+TGG + chr1_1:19957523-19957542 Msa0012940:intron 10.0%
!! GATGATTAATTAATATAATA+AGG - chr1_1:19957608-19957627 None:intergenic 10.0%
!! ATTTGATGGAAAAAAAATTA+GGG - chr1_1:19953455-19953474 None:intergenic 15.0%
!! AATTTGATGGAAAAAAAATT+AGG - chr1_1:19953456-19953475 None:intergenic 15.0%
!!! AATTTATTTTTCATATGATC+TGG + chr1_1:19954582-19954601 Msa0012940:intron 15.0%
!! TAAGTGTATTTATGAAATTT+GGG + chr1_1:19955013-19955032 Msa0012940:intron 15.0%
!! GATAGATATTTAAAAAGATT+AGG - chr1_1:19955212-19955231 None:intergenic 15.0%
!! TAAAAGATATAAGAAAAAGA+AGG - chr1_1:19955558-19955577 None:intergenic 15.0%
!! ATTCAAAAAAAGTTATCAAA+AGG + chr1_1:19955993-19956012 Msa0012940:intron 15.0%
!!! CATATATAACTCATTTTTTA+TGG - chr1_1:19956186-19956205 None:intergenic 15.0%
!!! TTATATATATTTTCCCATAT+AGG + chr1_1:19956342-19956361 Msa0012940:intron 15.0%
!!! CTTGTATGTTTTTTTTTTTT+TGG + chr1_1:19957004-19957023 Msa0012940:intron 15.0%
!!! TATGTTTTTTTTTTTTTGGA+AGG + chr1_1:19957008-19957027 Msa0012940:intron 15.0%
!!! ATGTTTTTTTTTTTTTGGAA+GGG + chr1_1:19957009-19957028 Msa0012940:intron 15.0%
!! AAAAAAAATTGACAACAATT+TGG - chr1_1:19957761-19957780 None:intergenic 15.0%
!! TTACAAATAATCATAGTAAT+GGG - chr1_1:19957812-19957831 None:intergenic 15.0%
!! ATTACAAATAATCATAGTAA+TGG - chr1_1:19957813-19957832 None:intergenic 15.0%
!! TACTATGATTATTTGTAATT+AGG + chr1_1:19957814-19957833 Msa0012940:intron 15.0%
!!! GTTTTTATTTACAATTTTTG+TGG + chr1_1:19958143-19958162 Msa0012940:intron 15.0%
!! ACAGAGTAAATAATAATAAT+AGG - chr1_1:19958533-19958552 None:intergenic 15.0%
!!! ATAATCAGTTTTATCAATTG+CGG - chr1_1:19954503-19954522 None:intergenic 20.0%
!!! AATGGTTTTAAATTGCAATT+CGG + chr1_1:19954624-19954643 Msa0012940:intron 20.0%
!! AGTAGATGAAAAATTCAATA+TGG - chr1_1:19954815-19954834 None:intergenic 20.0%
!!! ATATTGAATTTTTCATCTAC+TGG + chr1_1:19954814-19954833 Msa0012940:intron 20.0%
!! ATAAAAAATCATCAATCTGA+TGG + chr1_1:19954854-19954873 Msa0012940:CDS 20.0%
!! CTAAGTGTATTTATGAAATT+TGG + chr1_1:19955012-19955031 Msa0012940:intron 20.0%
!! AAAAATGACAAAAAGAAATG+AGG - chr1_1:19955520-19955539 None:intergenic 20.0%
!!! TTGTTTTTCATTCTTTGTTT+TGG + chr1_1:19955783-19955802 Msa0012940:intron 20.0%
!! CAAATAAAAATTAATACCAC+TGG - chr1_1:19956246-19956265 None:intergenic 20.0%
!! ATGATGGTCTAAAAAAAATT+GGG - chr1_1:19956441-19956460 None:intergenic 20.0%
!! AATGATGGTCTAAAAAAAAT+TGG - chr1_1:19956442-19956461 None:intergenic 20.0%
!!! TTTTAGACCATCATTTTTTT+TGG + chr1_1:19956447-19956466 Msa0012940:intron 20.0%
!!! TTTAGACCATCATTTTTTTT+GGG + chr1_1:19956448-19956467 Msa0012940:intron 20.0%
!! GCCAATATCTTAAATTATAA+CGG + chr1_1:19956471-19956490 Msa0012940:intron 20.0%
!! CCAATATCTTAAATTATAAC+GGG + chr1_1:19956472-19956491 Msa0012940:intron 20.0%
!! CAATATCTTAAATTATAACG+GGG + chr1_1:19956473-19956492 Msa0012940:intron 20.0%
!! AGTACAATAAATATTTGACT+TGG - chr1_1:19956528-19956547 None:intergenic 20.0%
!! AACTTTAAGTATTATGTCTT+TGG + chr1_1:19956572-19956591 Msa0012940:intron 20.0%
!!! TGTTTTTTTTTTTTTGGAAG+GGG + chr1_1:19957010-19957029 Msa0012940:intron 20.0%
!! TCCATATTACAATTATCTAT+AGG + chr1_1:19957086-19957105 Msa0012940:intron 20.0%
!! CCATATTACAATTATCTATA+GGG + chr1_1:19957087-19957106 Msa0012940:intron 20.0%
!!! ATTTGTTAACGTTATTTGTT+TGG + chr1_1:19957268-19957287 Msa0012940:intron 20.0%
!!! TATTTTGTTGTTGTTACTAT+TGG + chr1_1:19957303-19957322 Msa0012940:intron 20.0%
!! AAAAAAAAACGACAACAATT+TGG - chr1_1:19957673-19957692 None:intergenic 20.0%
!! TGGTTAACAAAGTTTAAATA+TGG - chr1_1:19957737-19957756 None:intergenic 20.0%
!! TCATAGAAGACAATTAATTA+TGG + chr1_1:19957838-19957857 Msa0012940:intron 20.0%
!! TACTTAGAAAGTAATACATT+TGG - chr1_1:19957973-19957992 None:intergenic 20.0%
!! AAATGTATTACTTTCTAAGT+AGG + chr1_1:19957972-19957991 Msa0012940:intron 20.0%
!! GAATTATTGAATCTGAATAA+GGG - chr1_1:19958492-19958511 None:intergenic 20.0%
!! TGAATTATTGAATCTGAATA+AGG - chr1_1:19958493-19958512 None:intergenic 20.0%
!! TAATAATAGGCCATAATAAT+CGG - chr1_1:19958520-19958539 None:intergenic 20.0%
!! ATATTAAGACAACAAAAAGA+AGG - chr1_1:19959438-19959457 None:intergenic 20.0%
!!! TTGTTGTTATTGAGTTTTCA+TGG + chr1_1:19953582-19953601 Msa0012940:exon 25.0%
!!! TTTTTGTGTTGCAGTTTTAA+TGG + chr1_1:19954606-19954625 Msa0012940:intron 25.0%
!!! GAAATGTTACTATTTTTAGC+AGG - chr1_1:19954754-19954773 None:intergenic 25.0%
! TTATTCAAATCATAGTCAAC+AGG - chr1_1:19954956-19954975 None:intergenic 25.0%
! AAAAAACAGCAAGTAATGTT+CGG + chr1_1:19955120-19955139 Msa0012940:intron 25.0%
!! AAGATTAGGATGTCAATTTT+GGG - chr1_1:19955198-19955217 None:intergenic 25.0%
!! AAAGATTAGGATGTCAATTT+TGG - chr1_1:19955199-19955218 None:intergenic 25.0%
! TTCATTGGTCAATGATTTAA+GGG + chr1_1:19955683-19955702 Msa0012940:CDS 25.0%
! AATGAAAAACAAATTAGCGA+TGG - chr1_1:19955775-19955794 None:intergenic 25.0%
! ACCAACATTAAAAATATGTG+CGG - chr1_1:19955880-19955899 None:intergenic 25.0%
! CAAAAAAAGTTATCAAAAGG+AGG + chr1_1:19955996-19956015 Msa0012940:intron 25.0%
!! GCTAACTATCATCTTTAAAA+TGG + chr1_1:19956039-19956058 Msa0012940:intron 25.0%
! TGATGGTCTAAAAAAAATTG+GGG - chr1_1:19956440-19956459 None:intergenic 25.0%
!!! TTAGACCATCATTTTTTTTG+GGG + chr1_1:19956449-19956468 Msa0012940:intron 25.0%
!! CCCGTTATAATTTAAGATAT+TGG - chr1_1:19956475-19956494 None:intergenic 25.0%
!!! TTGCAACATTTTGAAACTTA+GGG - chr1_1:19956617-19956636 None:intergenic 25.0%
!!! ATTGCAACATTTTGAAACTT+AGG - chr1_1:19956618-19956637 None:intergenic 25.0%
! TGCTAATATCTTTAATGAAC+AGG + chr1_1:19956660-19956679 Msa0012940:intron 25.0%
! GCTAATATCTTTAATGAACA+GGG + chr1_1:19956661-19956680 Msa0012940:intron 25.0%
! TGGTCATTATTATAGAAGTA+GGG - chr1_1:19956836-19956855 None:intergenic 25.0%
! TTGGTCATTATTATAGAAGT+AGG - chr1_1:19956837-19956856 None:intergenic 25.0%
! TTCATTTAGTGAAACTTCAT+TGG - chr1_1:19956856-19956875 None:intergenic 25.0%
!!! GTTTTTTTTTTTTTGGAAGG+GGG + chr1_1:19957011-19957030 Msa0012940:intron 25.0%
! TCAAATTTGTAAACGTAACA+CGG + chr1_1:19957061-19957080 Msa0012940:intron 25.0%
! CCCTATAGATAATTGTAATA+TGG - chr1_1:19957090-19957109 None:intergenic 25.0%
! TTGTATATTTGAACACGATT+TGG - chr1_1:19957513-19957532 None:intergenic 25.0%
!!! GTTGATGATGTTTAAAATCA+TGG + chr1_1:19957545-19957564 Msa0012940:intron 25.0%
! TGGTTAACGAAGTTTAAATA+TGG - chr1_1:19957649-19957668 None:intergenic 25.0%
! AAAATTGACAACAATTTGGT+TGG - chr1_1:19957757-19957776 None:intergenic 25.0%
! AAACAAAAACCTAGAATTCA+TGG - chr1_1:19958096-19958115 None:intergenic 25.0%
! ATGTTACTGTGCTTATAATT+TGG + chr1_1:19958205-19958224 Msa0012940:intron 25.0%
!! CTTTTAGTCAATTGTATTCA+AGG + chr1_1:19958249-19958268 Msa0012940:intron 25.0%
! TGAGTTAAATACATTGCTTA+TGG + chr1_1:19958417-19958436 Msa0012940:intron 25.0%
! AATTCAATACCCGATTATTA+TGG + chr1_1:19958507-19958526 Msa0012940:intron 25.0%
! AATAATAGGCCATAATAATC+GGG - chr1_1:19958519-19958538 None:intergenic 25.0%
! TCTAATCATAGCAATACTAA+TGG + chr1_1:19959099-19959118 Msa0012940:CDS 25.0%
!! TTTCCATTCATTTTACCTTT+TGG - chr1_1:19959129-19959148 None:intergenic 25.0%
! GATATAACATTATACTGCAA+AGG + chr1_1:19959346-19959365 Msa0012940:three_prime_UTR 25.0%
TTGTTGAGTAATGAGAAGAA+AGG - chr1_1:19953367-19953386 None:intergenic 30.0%
CGAAAAAGTGGAAAATTTGA+TGG - chr1_1:19953469-19953488 None:intergenic 30.0%
! AAGGGAATTTTGTGGTTAAA+GGG + chr1_1:19954082-19954101 Msa0012940:CDS 30.0%
AAGAGTGAAGAAGTTAAATC+TGG + chr1_1:19954120-19954139 Msa0012940:CDS 30.0%
ACTGTTAAACCACAATGTTA+GGG + chr1_1:19954276-19954295 Msa0012940:intron 30.0%
! TACCGAGTATTTTCAAATAG+CGG + chr1_1:19954348-19954367 Msa0012940:intron 30.0%
AAACTGATTATACTACACCA+TGG + chr1_1:19954512-19954531 Msa0012940:intron 30.0%
!!! TGATTTTAATTGCAGTCAAG+TGG - chr1_1:19954663-19954682 None:intergenic 30.0%
TAAATACACTTAGCAAAGTC+TGG - chr1_1:19955005-19955024 None:intergenic 30.0%
CAAACTACATGTATCCTATA+AGG - chr1_1:19955306-19955325 None:intergenic 30.0%
TTAGCAATGAGATGTTTGAT+GGG + chr1_1:19955459-19955478 Msa0012940:CDS 30.0%
! AGTACTGAAGTTTCAAAACT+TGG + chr1_1:19955660-19955679 Msa0012940:CDS 30.0%
AGTTTCAAAACTTGGTTCAT+TGG + chr1_1:19955668-19955687 Msa0012940:CDS 30.0%
GTTCATTGGTCAATGATTTA+AGG + chr1_1:19955682-19955701 Msa0012940:CDS 30.0%
TTTGTCTGATTGTTATGCAA+TGG + chr1_1:19955822-19955841 Msa0012940:intron 30.0%
!! TCCGCACATATTTTTAATGT+TGG + chr1_1:19955876-19955895 Msa0012940:intron 30.0%
GTAGTTGAGTAGTTATCAAA+AGG + chr1_1:19955955-19955974 Msa0012940:intron 30.0%
! TTATCAAAAGGAGGTCATTT+TGG + chr1_1:19955967-19955986 Msa0012940:intron 30.0%
AAGATGATAGTTAGCATCAA+AGG - chr1_1:19956034-19956053 None:intergenic 30.0%
GAGTTATATATGTTCAGTGT+CGG + chr1_1:19956194-19956213 Msa0012940:intron 30.0%
! AAAAACAAAGGGTTTGGAAT+GGG - chr1_1:19956414-19956433 None:intergenic 30.0%
AATTGGGGTACAAAAACAAA+GGG - chr1_1:19956425-19956444 None:intergenic 30.0%
AAATTGGGGTACAAAAACAA+AGG - chr1_1:19956426-19956445 None:intergenic 30.0%
GGTCTCTAAATTGTTTAAGA+CGG + chr1_1:19956494-19956513 Msa0012940:intron 30.0%
!! AAATATTTGACTTGGCATCA+GGG - chr1_1:19956520-19956539 None:intergenic 30.0%
!! TAAATATTTGACTTGGCATC+AGG - chr1_1:19956521-19956540 None:intergenic 30.0%
!!! TGCAACATTTTGAAACTTAG+GGG - chr1_1:19956616-19956635 None:intergenic 30.0%
! CTTTTGTTAACCACATATGT+CGG - chr1_1:19956690-19956709 None:intergenic 30.0%
TATTATAGAAGTAGGGAATG+TGG - chr1_1:19956829-19956848 None:intergenic 30.0%
ATGATATCTTGAAACAAGGA+AGG - chr1_1:19956907-19956926 None:intergenic 30.0%
CTCAATGATATCTTGAAACA+AGG - chr1_1:19956911-19956930 None:intergenic 30.0%
AACGTTAACAAATATTACCC+AGG - chr1_1:19957261-19957280 None:intergenic 30.0%
TGGTTAATGCTATTCAAATG+TGG + chr1_1:19957366-19957385 Msa0012940:intron 30.0%
TGTAATTAACCATGACTTTC+TGG + chr1_1:19957463-19957482 Msa0012940:intron 30.0%
AAAAACGACAACAATTTGGT+TGG - chr1_1:19957669-19957688 None:intergenic 30.0%
ATTTACCCTACCTAATACTA+GGG - chr1_1:19957907-19957926 None:intergenic 30.0%
AATTTACCCTACCTAATACT+AGG - chr1_1:19957908-19957927 None:intergenic 30.0%
! GTAGGGTAAATTGTTTTCTT+TGG + chr1_1:19957916-19957935 Msa0012940:intron 30.0%
ACCAAGTACATTTAAAGATG+AGG - chr1_1:19957945-19957964 None:intergenic 30.0%
TTTCATCATCCATGAATTCT+AGG + chr1_1:19958084-19958103 Msa0012940:intron 30.0%
! ATTTGGCTTAGTAACTTGAA+AGG + chr1_1:19958222-19958241 Msa0012940:intron 30.0%
ATATCATGCATCATGATTCA+CGG - chr1_1:19958286-19958305 None:intergenic 30.0%
TGAATCATGATGCATGATAT+GGG + chr1_1:19958286-19958305 Msa0012940:intron 30.0%
ACATTGCTTATGGTAATTAG+AGG + chr1_1:19958427-19958446 Msa0012940:intron 30.0%
AATACTAATGGTTCACCAAA+AGG + chr1_1:19959111-19959130 Msa0012940:CDS 30.0%
TCACCAAAAGGTAAAATGAA+TGG + chr1_1:19959123-19959142 Msa0012940:CDS 30.0%
ATTGAAAGACAAGAATGCAA+TGG + chr1_1:19959150-19959169 Msa0012940:CDS 30.0%
TTGAAGCAAAATGTAAAGAG+CGG + chr1_1:19959315-19959334 Msa0012940:three_prime_UTR 30.0%
AAGACAACAAAAAGAAGGAA+TGG - chr1_1:19959433-19959452 None:intergenic 30.0%
! GAAAAAGGAAAGTGTGAAGA+TGG - chr1_1:19953394-19953413 None:intergenic 35.0%
GTGAGATCTACGAATGAAAA+AGG - chr1_1:19953409-19953428 None:intergenic 35.0%
GTGAAATTGAAGCGAAAAAG+TGG - chr1_1:19953481-19953500 None:intergenic 35.0%
! ACCGGAAATTAAGCATTTTC+CGG + chr1_1:19953630-19953649 Msa0012940:CDS 35.0%
! AGAGAGATGGGTTTATGAAT+TGG + chr1_1:19953734-19953753 Msa0012940:CDS 35.0%
GATTGTTTGTGTCAGCATTT+AGG + chr1_1:19953793-19953812 Msa0012940:CDS 35.0%
! TGTCAGCATTTAGGTGTTAT+TGG + chr1_1:19953802-19953821 Msa0012940:CDS 35.0%
!! GTCAGCATTTAGGTGTTATT+GGG + chr1_1:19953803-19953822 Msa0012940:CDS 35.0%
!! TCAGCATTTAGGTGTTATTG+GGG + chr1_1:19953804-19953823 Msa0012940:CDS 35.0%
! GCTTATGCAGCAGTATTTTT+CGG + chr1_1:19953894-19953913 Msa0012940:CDS 35.0%
TTCCTAAACTCCTTAACAAC+CGG - chr1_1:19953982-19954001 None:intergenic 35.0%
GTTGTTAAGGAGTTTAGGAA+GGG + chr1_1:19953982-19954001 Msa0012940:CDS 35.0%
! GAAGGGAATTTTGTGGTTAA+AGG + chr1_1:19954081-19954100 Msa0012940:CDS 35.0%
AGTGAAGAAGTTAAATCTGG+TGG + chr1_1:19954123-19954142 Msa0012940:CDS 35.0%
TAAGAATTTAGACACTGCTG+AGG + chr1_1:19954167-19954186 Msa0012940:CDS 35.0%
AGGAGAAGAAAGGTAAATGA+TGG + chr1_1:19954187-19954206 Msa0012940:intron 35.0%
GGAGAAGAAAGGTAAATGAT+GGG + chr1_1:19954188-19954207 Msa0012940:intron 35.0%
TTGTTCGATTATTTGAGTCG+TGG + chr1_1:19954213-19954232 Msa0012940:intron 35.0%
!!! TGAGTCGTGGTTTTAAATTG+CGG + chr1_1:19954226-19954245 Msa0012940:intron 35.0%
GCGATTGTAGATATAGTCAT+AGG + chr1_1:19954251-19954270 Msa0012940:intron 35.0%
GACTGTTAAACCACAATGTT+AGG + chr1_1:19954275-19954294 Msa0012940:intron 35.0%
TTTCACTAAATCGCATATCG+CGG - chr1_1:19954413-19954432 None:intergenic 35.0%
!! GTGAAAGTGTTGTCAAATAG+CGG + chr1_1:19954427-19954446 Msa0012940:intron 35.0%
TACTACACCATGGTTAATCT+TGG + chr1_1:19954522-19954541 Msa0012940:intron 35.0%
TAGAGATCCAAGATTAACCA+TGG - chr1_1:19954532-19954551 None:intergenic 35.0%
!!! ACTATTTTTAGCAGGCCAAA+AGG - chr1_1:19954746-19954765 None:intergenic 35.0%
AATTTCCAGAGCTCTTCAAA+AGG - chr1_1:19954880-19954899 None:intergenic 35.0%
ACAGAATGTGCATCAAATTC+TGG + chr1_1:19954920-19954939 Msa0012940:CDS 35.0%
TGACAAACACAGAAAGATGA+GGG - chr1_1:19955160-19955179 None:intergenic 35.0%
TTCATACACCATGTGCTTAT+AGG + chr1_1:19955270-19955289 Msa0012940:intron 35.0%
!! GTACAAGAGTATCAGTATGA+TGG - chr1_1:19955357-19955376 None:intergenic 35.0%
! AACAAAAGTTTTTCCTGTGG+TGG - chr1_1:19955441-19955460 None:intergenic 35.0%
! GCTAACAAAAGTTTTTCCTG+TGG - chr1_1:19955444-19955463 None:intergenic 35.0%
GTTAGCAATGAGATGTTTGA+TGG + chr1_1:19955458-19955477 Msa0012940:CDS 35.0%
!!! GGCATCTGTTTTTAATCTTC+AGG + chr1_1:19955593-19955612 Msa0012940:intron 35.0%
! CTTCAGGTTAATGTTGTTGA+AGG + chr1_1:19955609-19955628 Msa0012940:intron 35.0%
TTAATGTTGTTGAAGGACTG+AGG + chr1_1:19955616-19955635 Msa0012940:CDS 35.0%
GGAAGAAAAGGACAATTTCA+AGG + chr1_1:19955711-19955730 Msa0012940:CDS 35.0%
GTTGAGTAGTTATCAAAAGG+AGG + chr1_1:19955958-19955977 Msa0012940:intron 35.0%
AGTTATCAAAAGGAGGTCTA+TGG + chr1_1:19956003-19956022 Msa0012940:intron 35.0%
CAAAAACAAAGGGTTTGGAA+TGG - chr1_1:19956415-19956434 None:intergenic 35.0%
ATTGGCCCCAAAAAAAATGA+TGG - chr1_1:19956457-19956476 None:intergenic 35.0%
!!! GCAACATTTTGAAACTTAGG+GGG - chr1_1:19956615-19956634 None:intergenic 35.0%
CGACATATGTGGTTAACAAA+AGG + chr1_1:19956688-19956707 Msa0012940:CDS 35.0%
GAATCTGACAGATAAGAATG+TGG + chr1_1:19956873-19956892 Msa0012940:intron 35.0%
!! CATCGTCGATTTCTATAATG+AGG + chr1_1:19956975-19956994 Msa0012940:CDS 35.0%
! ACTGAATGTGACATGACTTT+TGG + chr1_1:19957174-19957193 Msa0012940:CDS 35.0%
! CTGAATGTGACATGACTTTT+GGG + chr1_1:19957175-19957194 Msa0012940:CDS 35.0%
GGTCAATTGTATTCAGTTGA+TGG + chr1_1:19957566-19957585 Msa0012940:intron 35.0%
TTAGTTGAGTCCCTAGTATT+AGG + chr1_1:19957894-19957913 Msa0012940:intron 35.0%
GCCTCATCTTTAAATGTACT+TGG + chr1_1:19957941-19957960 Msa0012940:intron 35.0%
TTCATGGATGATGAAACACA+AGG - chr1_1:19958080-19958099 None:intergenic 35.0%
GTGAATCATGATGCATGATA+TGG + chr1_1:19958285-19958304 Msa0012940:intron 35.0%
GAATCATGATGCATGATATG+GGG + chr1_1:19958287-19958306 Msa0012940:intron 35.0%
GTAACGATCGAAAAACTATG+CGG - chr1_1:19958333-19958352 None:intergenic 35.0%
GTTTCATACCATTATGTTCG+TGG + chr1_1:19958383-19958402 Msa0012940:intron 35.0%
ATTAACCTCCACGAACATAA+TGG - chr1_1:19958394-19958413 None:intergenic 35.0%
ATTATGTTCGTGGAGGTTAA+TGG + chr1_1:19958393-19958412 Msa0012940:intron 35.0%
ATTTACTCTGTTGCAACTGT+AGG + chr1_1:19958542-19958561 Msa0012940:intron 35.0%
ATGCGTTGTTTGTGAATAGA+AGG - chr1_1:19958619-19958638 None:intergenic 35.0%
! ATATGATTCGGAGATCTGTT+TGG - chr1_1:19958736-19958755 None:intergenic 35.0%
GGACGATGACTAATATGATT+CGG - chr1_1:19958748-19958767 None:intergenic 35.0%
TGAACAGCAGAATAATGCTT+GGG - chr1_1:19958778-19958797 None:intergenic 35.0%
TTGAACAGCAGAATAATGCT+TGG - chr1_1:19958779-19958798 None:intergenic 35.0%
TATTCTGCTGTTCAAGTAAC+CGG + chr1_1:19958784-19958803 Msa0012940:CDS 35.0%
ACAGGTGTAGCAAATTGTAT+GGG - chr1_1:19958886-19958905 None:intergenic 35.0%
TACCTTAACTGAAGTGAACT+TGG + chr1_1:19959035-19959054 Msa0012940:CDS 35.0%
ACCTTAACTGAAGTGAACTT+GGG + chr1_1:19959036-19959055 Msa0012940:CDS 35.0%
AATTCCAACCTCTACGATAA+AGG + chr1_1:19959065-19959084 Msa0012940:CDS 35.0%
! TTTTCCTTTATCGTAGAGGT+TGG - chr1_1:19959072-19959091 None:intergenic 35.0%
ACCTCTACGATAAAGGAAAA+TGG + chr1_1:19959072-19959091 Msa0012940:CDS 35.0%
CCTCTACGATAAAGGAAAAT+GGG + chr1_1:19959073-19959092 Msa0012940:CDS 35.0%
ATCTCTCTCTAATCTCTCAT+TGG - chr1_1:19959248-19959267 None:intergenic 35.0%
AATGAGAGATTAGAGAGAGA+TGG + chr1_1:19959247-19959266 Msa0012940:exon 35.0%
AGAGATGGAAAGCTTATCAA+AGG + chr1_1:19959262-19959281 Msa0012940:three_prime_UTR 35.0%
! GGGAAGGATGTATAACATTT+TGG + chr1_1:19959378-19959397 Msa0012940:three_prime_UTR 35.0%
AGAAGGAATGGAACTAACAA+AGG - chr1_1:19959421-19959440 None:intergenic 35.0%
! AAAGGAAAGTGTGAAGATGG+TGG - chr1_1:19953391-19953410 None:intergenic 40.0%
! AGTTTTCATGGCAATGCCAA+TGG + chr1_1:19953594-19953613 Msa0012940:exon 40.0%
! GTTTTCATGGCAATGCCAAT+GGG + chr1_1:19953595-19953614 Msa0012940:exon 40.0%
AATGGGAAATGCAGTAACAC+CGG + chr1_1:19953612-19953631 Msa0012940:CDS 40.0%
GCCGGAAAATGCTTAATTTC+CGG - chr1_1:19953634-19953653 None:intergenic 40.0%
! GGAAATTAAGCATTTTCCGG+CGG + chr1_1:19953633-19953652 Msa0012940:CDS 40.0%
AGCAGCAACATCAACAACAA+TGG + chr1_1:19953701-19953720 Msa0012940:CDS 40.0%
!! TGGTTTGTTGATGAGAGAGA+TGG + chr1_1:19953721-19953740 Msa0012940:CDS 40.0%
!! GGTTTGTTGATGAGAGAGAT+GGG + chr1_1:19953722-19953741 Msa0012940:CDS 40.0%
GGTGAGTATGATCATGTTGT+TGG + chr1_1:19953832-19953851 Msa0012940:CDS 40.0%
!! GCAGTATTTTTCGGTTAACG+AGG + chr1_1:19953903-19953922 Msa0012940:CDS 40.0%
GGTTGTTAAGGAGTTTAGGA+AGG + chr1_1:19953981-19954000 Msa0012940:CDS 40.0%
TTAAGGAGTTTAGGAAGGGT+AGG + chr1_1:19953986-19954005 Msa0012940:CDS 40.0%
AGTGTAGAAAATCATCGTCG+TGG + chr1_1:19954057-19954076 Msa0012940:CDS 40.0%
AAAATCATCGTCGTGGTGAA+GGG + chr1_1:19954064-19954083 Msa0012940:CDS 40.0%
GTTAAATCTGGTGGCAAAGT+TGG + chr1_1:19954132-19954151 Msa0012940:CDS 40.0%
TGGTGGCAAAGTTGGATATA+AGG + chr1_1:19954140-19954159 Msa0012940:CDS 40.0%
CGCCGCTATTTGAAAATACT+CGG - chr1_1:19954353-19954372 None:intergenic 40.0%
AATCGCATATCGCGGAATAA+CGG - chr1_1:19954405-19954424 None:intergenic 40.0%
TGTTGTCAAATAGCGGCTAT+AGG + chr1_1:19954434-19954453 Msa0012940:intron 40.0%
!! TTTTTAGCAGGCCAAAAGGT+CGG - chr1_1:19954742-19954761 None:intergenic 40.0%
!! AAGAGCTCTGGAAATTCTCA+AGG + chr1_1:19954884-19954903 Msa0012940:CDS 40.0%
GAATGTGCATCAAATTCTGG+AGG + chr1_1:19954923-19954942 Msa0012940:CDS 40.0%
AGCAAGTAATGTTCGGACTT+CGG + chr1_1:19955127-19955146 Msa0012940:intron 40.0%
GTGACAAACACAGAAAGATG+AGG - chr1_1:19955161-19955180 None:intergenic 40.0%
CATCTTTCTGTGTTTGTCAC+AGG + chr1_1:19955161-19955180 Msa0012940:intron 40.0%
GTATGAAAGCTAGCAAGCAA+GGG - chr1_1:19955257-19955276 None:intergenic 40.0%
TGTATGAAAGCTAGCAAGCA+AGG - chr1_1:19955258-19955277 None:intergenic 40.0%
ACTCTCTTCCTATAAGCACA+TGG - chr1_1:19955281-19955300 None:intergenic 40.0%
TAGGAAGAGAGTCACCTTAT+AGG + chr1_1:19955289-19955308 Msa0012940:intron 40.0%
!! ATGTAGTTTGCTGTGAAGAC+TGG + chr1_1:19955316-19955335 Msa0012940:intron 40.0%
AATCAACAACAGAACGTGAG+TGG + chr1_1:19955413-19955432 Msa0012940:CDS 40.0%
TGAGATGTTTGATGGGAAGA+TGG + chr1_1:19955466-19955485 Msa0012940:CDS 40.0%
ATGTTTGATGGGAAGATGGT+AGG + chr1_1:19955470-19955489 Msa0012940:intron 40.0%
GTCAATGATTTAAGGGTTGC+TGG + chr1_1:19955690-19955709 Msa0012940:CDS 40.0%
TTAAGGGTTGCTGGAAGAAA+AGG + chr1_1:19955699-19955718 Msa0012940:CDS 40.0%
TATGCAATGGTCAATGTGTG+TGG + chr1_1:19955835-19955854 Msa0012940:intron 40.0%
ACATTTGTGTATGCCAAGCA+GGG + chr1_1:19956069-19956088 Msa0012940:intron 40.0%
ATTGGGCCCCAAAAAAATTG+AGG - chr1_1:19956134-19956153 None:intergenic 40.0%
!! TTATAAAAAAGGTGCCTGCC+AGG - chr1_1:19956293-19956312 None:intergenic 40.0%
!! TTTTTAGCACAAACGACGAC+AGG - chr1_1:19956368-19956387 None:intergenic 40.0%
GGGTACAAAAACAAAGGGTT+TGG - chr1_1:19956420-19956439 None:intergenic 40.0%
GTTAACAAAAGGCCCATAAG+AGG + chr1_1:19956699-19956718 Msa0012940:CDS 40.0%
TCTCTTCCATGTCCTCTTAT+GGG - chr1_1:19956714-19956733 None:intergenic 40.0%
TGGAAGAGAGATGATTCAGT+TGG + chr1_1:19956725-19956744 Msa0012940:CDS 40.0%
GGAAGAGAGATGATTCAGTT+GGG + chr1_1:19956726-19956745 Msa0012940:CDS 40.0%
TCAAGATATCATTGAGCGCA+TGG + chr1_1:19956915-19956934 Msa0012940:CDS 40.0%
! CTTAACAGACATGACTTGTG+AGG - chr1_1:19956944-19956963 None:intergenic 40.0%
GGGTGAGTACATGAGAAATT+TGG + chr1_1:19957031-19957050 Msa0012940:intron 40.0%
AATGAAGACGGCCAAATGTT+TGG - chr1_1:19957126-19957145 None:intergenic 40.0%
AACATTTGGCCGTCTTCATT+TGG + chr1_1:19957126-19957145 Msa0012940:CDS 40.0%
! GTCAGGAAAAGCGTATAAAC+AGG - chr1_1:19957156-19957175 None:intergenic 40.0%
AAGTCATGTCACATTCAGTC+AGG - chr1_1:19957173-19957192 None:intergenic 40.0%
! ACATTTGTCTCAGAGCACTT+TGG + chr1_1:19957201-19957220 Msa0012940:CDS 40.0%
! CATTTGTCTCAGAGCACTTT+GGG + chr1_1:19957202-19957221 Msa0012940:CDS 40.0%
! ATTTGTCTCAGAGCACTTTG+GGG + chr1_1:19957203-19957222 Msa0012940:CDS 40.0%
AGCAATGTCAAGCTTTCTCT+TGG + chr1_1:19957234-19957253 Msa0012940:CDS 40.0%
! ATGGTGTCAATTACGTTGAG+TGG - chr1_1:19957630-19957649 None:intergenic 40.0%
! ATGGTGTTAGTTACGCTTAG+TGG - chr1_1:19957718-19957737 None:intergenic 40.0%
TTGAGTCCCTAGTATTAGGT+AGG + chr1_1:19957898-19957917 Msa0012940:intron 40.0%
TGAGTCCCTAGTATTAGGTA+GGG + chr1_1:19957899-19957918 Msa0012940:intron 40.0%
TGAAACACAAGGTCTCTTCA+TGG - chr1_1:19958069-19958088 None:intergenic 40.0%
TTCGATCGTTACTCGATACT+AGG + chr1_1:19958341-19958360 Msa0012940:intron 40.0%
TCATACCATTATGTTCGTGG+AGG + chr1_1:19958386-19958405 Msa0012940:intron 40.0%
TTTCCCTTGCATCACTAGAA+GGG - chr1_1:19958569-19958588 None:intergenic 40.0%
ATTTCCCTTGCATCACTAGA+AGG - chr1_1:19958570-19958589 None:intergenic 40.0%
!!! TCACTTGGCAGAGACTTTTT+TGG - chr1_1:19958667-19958686 None:intergenic 40.0%
GAATAATGCTTGGGAGCTAA+CGG - chr1_1:19958769-19958788 None:intergenic 40.0%
ATTCTGCTGTTCAAGTAACC+GGG + chr1_1:19958785-19958804 Msa0012940:CDS 40.0%
GCTATTAGGAGCAACATGTA+GGG - chr1_1:19958827-19958846 None:intergenic 40.0%
TGCTATTAGGAGCAACATGT+AGG - chr1_1:19958828-19958847 None:intergenic 40.0%
AACAATGGCTGCATGCTATT+AGG - chr1_1:19958841-19958860 None:intergenic 40.0%
AATTGTATGGGAGTTGCAAC+TGG - chr1_1:19958874-19958893 None:intergenic 40.0%
CACAGGTGTAGCAAATTGTA+TGG - chr1_1:19958887-19958906 None:intergenic 40.0%
ACCCAAGTTCACTTCAGTTA+AGG - chr1_1:19959040-19959059 None:intergenic 40.0%
! CCCATTTTCCTTTATCGTAG+AGG - chr1_1:19959076-19959095 None:intergenic 40.0%
AAGTGCAACTGAAGTTGAAC+AGG + chr1_1:19959179-19959198 Msa0012940:CDS 40.0%
TGAAGTTGAACAGGCTATAG+AGG + chr1_1:19959188-19959207 Msa0012940:CDS 40.0%
GAACAGGCTATAGAGGAAAA+AGG + chr1_1:19959195-19959214 Msa0012940:CDS 40.0%
CAAAATGTAAAGAGCGGCAA+CGG + chr1_1:19959321-19959340 Msa0012940:three_prime_UTR 40.0%
ATACTGCAAAGGAGAGAACA+AGG + chr1_1:19959357-19959376 Msa0012940:three_prime_UTR 40.0%
TACTGCAAAGGAGAGAACAA+GGG + chr1_1:19959358-19959377 Msa0012940:three_prime_UTR 40.0%
GGAATGGAACTAACAAAGGA+AGG - chr1_1:19959417-19959436 None:intergenic 40.0%
!! GGTGTTACTGCATTTCCCAT+TGG - chr1_1:19953613-19953632 None:intergenic 45.0%
! AATTAAGCATTTTCCGGCGG+TGG + chr1_1:19953636-19953655 Msa0012940:CDS 45.0%
TTGGATTCGTAGCGAATTCG+CGG + chr1_1:19953753-19953772 Msa0012940:CDS 45.0%
!! TTAGGTGTTATTGGGGAGAG+TGG + chr1_1:19953811-19953830 Msa0012940:CDS 45.0%
TTGTTGGTGCAATTCAGCAG+AGG + chr1_1:19953848-19953867 Msa0012940:CDS 45.0%
TTCAGCAGAGGAGGGTTAAT+TGG + chr1_1:19953860-19953879 Msa0012940:CDS 45.0%
GTTTGTGAAGCCGGTTGTTA+AGG + chr1_1:19953969-19953988 Msa0012940:CDS 45.0%
AGCCGGTTGTTAAGGAGTTT+AGG + chr1_1:19953977-19953996 Msa0012940:CDS 45.0%
AGTTTAGGAAGGGTAGGCAA+TGG + chr1_1:19953992-19954011 Msa0012940:CDS 45.0%
GAAAATCATCGTCGTGGTGA+AGG + chr1_1:19954063-19954082 Msa0012940:CDS 45.0%
! TCGTGGTGAAGGGAATTTTG+TGG + chr1_1:19954074-19954093 Msa0012940:CDS 45.0%
ACTGTGTGACCCTAACATTG+TGG - chr1_1:19954288-19954307 None:intergenic 45.0%
GGCTATAGGCTGTGAAATTG+CGG + chr1_1:19954448-19954467 Msa0012940:intron 45.0%
TGCAATTCGGAGACCATTGT+AGG + chr1_1:19954637-19954656 Msa0012940:intron 45.0%
! ATACACGACTTCCGACCTTT+TGG + chr1_1:19954728-19954747 Msa0012940:intron 45.0%
GTGTGTGGCAAACACTTGAT+AGG + chr1_1:19955850-19955869 Msa0012940:intron 45.0%
GACATTTGTGTATGCCAAGC+AGG + chr1_1:19956068-19956087 Msa0012940:intron 45.0%
!!! ACACCGGGCCTCAATTTTTT+TGG + chr1_1:19956123-19956142 Msa0012940:intron 45.0%
!!! CACCGGGCCTCAATTTTTTT+GGG + chr1_1:19956124-19956143 Msa0012940:intron 45.0%
!!! ACCGGGCCTCAATTTTTTTG+GGG + chr1_1:19956125-19956144 Msa0012940:intron 45.0%
! CAGTGTCGGAGTGAAATCAT+AGG + chr1_1:19956208-19956227 Msa0012940:intron 45.0%
GAGTGAAATCATAGGATGCG+TGG + chr1_1:19956216-19956235 Msa0012940:intron 45.0%
TGAAATCATAGGATGCGTGG+TGG + chr1_1:19956219-19956238 Msa0012940:intron 45.0%
CTTGACATGAGTTCAAGTCC+TGG + chr1_1:19956272-19956291 Msa0012940:intron 45.0%
AAACGACGACAGGCCTATAT+GGG - chr1_1:19956358-19956377 None:intergenic 45.0%
AAAAGGCCCATAAGAGGACA+TGG + chr1_1:19956705-19956724 Msa0012940:CDS 45.0%
CTCTCTTCCATGTCCTCTTA+TGG - chr1_1:19956715-19956734 None:intergenic 45.0%
ACATTGTCCACGTCAGCAAT+TGG - chr1_1:19956756-19956775 None:intergenic 45.0%
AATGTGACAGCGTCGTTCAA+AGG + chr1_1:19956771-19956790 Msa0012940:CDS 45.0%
AAATCGACGATGCAAGCATC+AGG - chr1_1:19956967-19956986 None:intergenic 45.0%
ACCACTCAACGCCAAACATT+TGG + chr1_1:19957112-19957131 Msa0012940:CDS 45.0%
TTTGGCCGTCTTCATTTGGA+AGG + chr1_1:19957130-19957149 Msa0012940:CDS 45.0%
ACAGGCCTTCCAAATGAAGA+CGG - chr1_1:19957138-19957157 None:intergenic 45.0%
TCAAGCTTTCTCTTGGACCT+GGG + chr1_1:19957241-19957260 Msa0012940:CDS 45.0%
CGTTGAACACCAGAAAGTCA+TGG - chr1_1:19957475-19957494 None:intergenic 45.0%
GACCAATGTGAAGTTGCTGA+CGG - chr1_1:19958706-19958725 None:intergenic 45.0%
! ATTCGGAGATCTGTTTGGTG+CGG - chr1_1:19958731-19958750 None:intergenic 45.0%
TTCTGCTGTTCAAGTAACCG+GGG + chr1_1:19958786-19958805 Msa0012940:CDS 45.0%
TTAGGAGCAACATGTAGGGA+TGG - chr1_1:19958823-19958842 None:intergenic 45.0%
AACTCATCTCAGCACTCACA+AGG + chr1_1:19959012-19959031 Msa0012940:CDS 45.0%
!!! ATCTTTTATATTTTATTTTA+TGG + chr1_1:19955570-19955589 Msa0012940:intron 5.0%
!!! TCTTTTATATTTTATTTTAT+GGG + chr1_1:19955571-19955590 Msa0012940:intron 5.0%
!! GAAAAATAAAATAAAAAAAT+TGG - chr1_1:19956152-19956171 None:intergenic 5.0%
TGGTCTGTACTGCATCTCAC+CGG - chr1_1:19953668-19953687 None:intergenic 50.0%
TGATGTTGCTGCTGTTGCTG+TGG - chr1_1:19953694-19953713 None:intergenic 50.0%
TTGGTGCAATTCAGCAGAGG+AGG + chr1_1:19953851-19953870 Msa0012940:CDS 50.0%
TGGTGCAATTCAGCAGAGGA+GGG + chr1_1:19953852-19953871 Msa0012940:CDS 50.0%
TAGGCAATGGCAGAGGTTTG+AGG + chr1_1:19954005-19954024 Msa0012940:CDS 50.0%
AGGCAATGGCAGAGGTTTGA+GGG + chr1_1:19954006-19954025 Msa0012940:CDS 50.0%
AATGGCAGAGGTTTGAGGGT+GGG + chr1_1:19954010-19954029 Msa0012940:CDS 50.0%
GTTTGAGGGTGGGAATGGTA+AGG + chr1_1:19954020-19954039 Msa0012940:CDS 50.0%
AGGGTGGGAATGGTAAGGAA+GGG + chr1_1:19954025-19954044 Msa0012940:CDS 50.0%
GACACTGCTGAGGAGAAGAA+AGG + chr1_1:19954177-19954196 Msa0012940:CDS 50.0%
TGCAGTCAAGTGGCCTACAA+TGG - chr1_1:19954653-19954672 None:intergenic 50.0%
!! GATGGCCTTTTGAAGAGCTC+TGG + chr1_1:19954872-19954891 Msa0012940:CDS 50.0%
GCCCCAAAAAAATTGAGGCC+CGG - chr1_1:19956129-19956148 None:intergenic 50.0%
ACATGAGTTCAAGTCCTGGC+AGG + chr1_1:19956276-19956295 Msa0012940:intron 50.0%
CAAACGACGACAGGCCTATA+TGG - chr1_1:19956359-19956378 None:intergenic 50.0%
AACAGGGAGTCCGACATATG+TGG + chr1_1:19956677-19956696 Msa0012940:intron 50.0%
! GCCAAATGTTTGGCGTTGAG+TGG - chr1_1:19957116-19957135 None:intergenic 50.0%
GTCAAGCTTTCTCTTGGACC+TGG + chr1_1:19957240-19957259 Msa0012940:CDS 50.0%
CAAGGTCTCTTCATGGTGCA+TGG - chr1_1:19958062-19958081 None:intergenic 50.0%
AGGTCCCTTCTAGTGATGCA+AGG + chr1_1:19958562-19958581 Msa0012940:intron 50.0%
GGTCCCTTCTAGTGATGCAA+GGG + chr1_1:19958563-19958582 Msa0012940:intron 50.0%
TCTCTGCCAAGTGATGCTCA+AGG + chr1_1:19958673-19958692 Msa0012940:CDS 50.0%
GCAAGACCTTGAGCATCACT+TGG - chr1_1:19958682-19958701 None:intergenic 50.0%
CTCCGTCAGCAACTTCACAT+TGG + chr1_1:19958701-19958720 Msa0012940:CDS 50.0%
!! TTCGGAGATCTGTTTGGTGC+GGG - chr1_1:19958730-19958749 None:intergenic 50.0%
TGAGATGAGTTAGCAGAGCC+AGG - chr1_1:19959003-19959022 None:intergenic 50.0%
AATGTAAAGAGCGGCAACGG+TGG + chr1_1:19959324-19959343 Msa0012940:three_prime_UTR 50.0%
GCAAAGGAGAGAACAAGGGA+AGG + chr1_1:19959362-19959381 Msa0012940:three_prime_UTR 50.0%
TCTGTACTGCATCTCACCGG+CGG - chr1_1:19953665-19953684 None:intergenic 55.0%
TGTTGCTGCTGTTGCTGTGG+TGG - chr1_1:19953691-19953710 None:intergenic 55.0%
GCAGCAGAGGTTTGTGAAGC+CGG + chr1_1:19953960-19953979 Msa0012940:CDS 55.0%
CAATGGCAGAGGTTTGAGGG+TGG + chr1_1:19954009-19954028 Msa0012940:CDS 55.0%
CAGAGGTTTGAGGGTGGGAA+TGG + chr1_1:19954015-19954034 Msa0012940:CDS 55.0%
GAGGGTGGGAATGGTAAGGA+AGG + chr1_1:19954024-19954043 Msa0012940:CDS 55.0%
AACGTGAGTGGTTCCACCAC+AGG + chr1_1:19955425-19955444 Msa0012940:CDS 55.0%
TTGTGTATGCCAAGCAGGGC+CGG + chr1_1:19956073-19956092 Msa0012940:intron 55.0%
GGGTGTTCCAATTGCTGACG+TGG + chr1_1:19956746-19956765 Msa0012940:CDS 55.0%
TGACAGCGTCGTTCAAAGGC+AGG + chr1_1:19956775-19956794 Msa0012940:intron 55.0%
GCAACATGTAGGGATGGAGC+CGG - chr1_1:19958817-19958836 None:intergenic 55.0%
! ACTGGCGCTGGGACAAACAA+TGG - chr1_1:19958856-19958875 None:intergenic 55.0%
ACAGTCCATCCTGTAGAGCC+AGG - chr1_1:19958919-19958938 None:intergenic 55.0%
!! TGGCTCTACAGGATGGACTG+TGG + chr1_1:19958918-19958937 Msa0012940:CDS 55.0%
GATGAGTTAGCAGAGCCAGG+CGG - chr1_1:19959000-19959019 None:intergenic 55.0%
TGCTGCTGTTGCTGTGGTGG+TGG - chr1_1:19953688-19953707 None:intergenic 60.0%
GGAAGGGTAGGCAATGGCAG+AGG + chr1_1:19953998-19954017 Msa0012940:CDS 60.0%
TGTTATAGCCCAGCCCCGAC+GGG - chr1_1:19956106-19956125 None:intergenic 60.0%
GTGTTATAGCCCAGCCCCGA+CGG - chr1_1:19956107-19956126 None:intergenic 60.0%
TCGGGGCTGGGCTATAACAC+CGG + chr1_1:19956107-19956126 Msa0012940:intron 60.0%
TAGGATGCGTGGTGGTCCAG+TGG + chr1_1:19956227-19956246 Msa0012940:intron 60.0%
!! TCAAGTAACCGGGGTGCTGC+CGG + chr1_1:19958795-19958814 Msa0012940:CDS 60.0%
TGGGAGTTGCAACTGGCGCT+GGG - chr1_1:19958867-19958886 None:intergenic 60.0%
ATGGGAGTTGCAACTGGCGC+TGG - chr1_1:19958868-19958887 None:intergenic 60.0%
TCCATCCTGTAGAGCCAGGC+GGG - chr1_1:19958915-19958934 None:intergenic 60.0%
GTCCATCCTGTAGAGCCAGG+CGG - chr1_1:19958916-19958935 None:intergenic 60.0%
!! GATGGACTGTGGCTCCTCCA+AGG + chr1_1:19958929-19958948 Msa0012940:CDS 60.0%
ACTCGAGGAGGAGGATGCCT+TGG - chr1_1:19958949-19958968 None:intergenic 60.0%
GGAACAACGACTCGAGGAGG+AGG - chr1_1:19958958-19958977 None:intergenic 60.0%
CCTCCTCGAGTCGTTGTTCC+CGG + chr1_1:19958958-19958977 Msa0012940:CDS 60.0%
GGAAGGAAGACTCCTGTGCC+GGG - chr1_1:19958979-19958998 None:intergenic 60.0%
CGGAAGGAAGACTCCTGTGC+CGG - chr1_1:19958980-19958999 None:intergenic 60.0%
ACAGGAGTCTTCCTTCCGCC+TGG + chr1_1:19958982-19959001 Msa0012940:CDS 60.0%
AGTTAGCAGAGCCAGGCGGA+AGG - chr1_1:19958996-19959015 None:intergenic 60.0%
TTTCCGGCGGTGGTTACCGC+CGG + chr1_1:19953646-19953665 Msa0012940:CDS 65.0%
GGTTGCGTACGCGTTGCAGC+AGG + chr1_1:19953924-19953943 Msa0012940:CDS 65.0%
TGCGTACGCGTTGCAGCAGG+TGG + chr1_1:19953927-19953946 Msa0012940:CDS 65.0%
CGGGGCTGGGCTATAACACC+GGG + chr1_1:19956108-19956127 Msa0012940:intron 65.0%
ACACCTGTGCCAATCCCGCC+TGG + chr1_1:19958898-19958917 Msa0012940:CDS 65.0%
CCTGTAGAGCCAGGCGGGAT+TGG - chr1_1:19958910-19958929 None:intergenic 65.0%
!! CCAATCCCGCCTGGCTCTAC+AGG + chr1_1:19958907-19958926 Msa0012940:CDS 65.0%
!! TCCCGCCTGGCTCTACAGGA+TGG + chr1_1:19958911-19958930 Msa0012940:CDS 65.0%
CGAGGAGGAGGATGCCTTGG+AGG - chr1_1:19958946-19958965 None:intergenic 65.0%
CCGGGAACAACGACTCGAGG+AGG - chr1_1:19958961-19958980 None:intergenic 65.0%
GTGCCGGGAACAACGACTCG+AGG - chr1_1:19958964-19958983 None:intergenic 65.0%
CGAGTCGTTGTTCCCGGCAC+AGG + chr1_1:19958964-19958983 Msa0012940:CDS 65.0%
TCACCGGCGGTAACCACCGC+CGG - chr1_1:19953652-19953671 None:intergenic 70.0%
ACGCGTTGCAGCAGGTGGCG+TGG + chr1_1:19953932-19953951 Msa0012940:CDS 70.0%
CGTTGCAGCAGGTGGCGTGG+AGG + chr1_1:19953935-19953954 Msa0012940:CDS 70.0%
TGCAGCAGGTGGCGTGGAGG+CGG + chr1_1:19953938-19953957 Msa0012940:CDS 70.0%
! GAGCCAGGCGGGATTGGCAC+AGG - chr1_1:19958904-19958923 None:intergenic 70.0%
TGGCGTGGAGGCGGCAGCAG+AGG + chr1_1:19953947-19953966 Msa0012940:CDS 75.0%
GGCTATGGGCCGGCCCTGCT+TGG - chr1_1:19956085-19956104 None:intergenic 75.0%
AGGGCCGGCCCATAGCCCGT+CGG + chr1_1:19956088-19956107 Msa0012940:intron 75.0%
!! AGCCCCGACGGGCTATGGGC+CGG - chr1_1:19956095-19956114 None:intergenic 75.0%
GCCCATAGCCCGTCGGGGCT+GGG + chr1_1:19956095-19956114 Msa0012940:intron 75.0%
!! GCCCAGCCCCGACGGGCTAT+GGG - chr1_1:19956099-19956118 None:intergenic 75.0%
!! AGCCCAGCCCCGACGGGCTA+TGG - chr1_1:19956100-19956119 None:intergenic 75.0%
GGATGGAGCCGGCAGCACCC+CGG - chr1_1:19958806-19958825 None:intergenic 75.0%
! GGGCCGGCCCATAGCCCGTC+GGG + chr1_1:19956089-19956108 Msa0012940:intron 80.0%
! GGCCGGCCCATAGCCCGTCG+GGG + chr1_1:19956090-19956109 Msa0012940:intron 80.0%
! GGCCCATAGCCCGTCGGGGC+TGG + chr1_1:19956094-19956113 Msa0012940:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 19953359 19959523 19953359 ID=Msa0012940;Name=Msa0012940
chr1_1 mRNA 19953359 19959523 19953359 ID=Msa0012940-mRNA-1;Parent=Msa0012940;Name=Msa0012940-mRNA-1;_AED=0.30;_eAED=0.30;_QI=242|1|1|1|1|1|8|272|658
chr1_1 exon 19953359 19954198 19953359 ID=Msa0012940-mRNA-1:exon:7127;Parent=Msa0012940-mRNA-1
chr1_1 exon 19954849 19954944 19954849 ID=Msa0012940-mRNA-1:exon:7128;Parent=Msa0012940-mRNA-1
chr1_1 exon 19955390 19955487 19955390 ID=Msa0012940-mRNA-1:exon:7129;Parent=Msa0012940-mRNA-1
chr1_1 exon 19955615 19955732 19955615 ID=Msa0012940-mRNA-1:exon:7130;Parent=Msa0012940-mRNA-1
chr1_1 exon 19956682 19956792 19956682 ID=Msa0012940-mRNA-1:exon:7131;Parent=Msa0012940-mRNA-1
chr1_1 exon 19956884 19956996 19956884 ID=Msa0012940-mRNA-1:exon:7132;Parent=Msa0012940-mRNA-1
chr1_1 exon 19957108 19957262 19957108 ID=Msa0012940-mRNA-1:exon:7133;Parent=Msa0012940-mRNA-1
chr1_1 exon 19958564 19959523 19958564 ID=Msa0012940-mRNA-1:exon:7134;Parent=Msa0012940-mRNA-1
chr1_1 five_prime_UTR 19953359 19953600 19953359 ID=Msa0012940-mRNA-1:five_prime_utr;Parent=Msa0012940-mRNA-1
chr1_1 CDS 19953601 19954198 19953601 ID=Msa0012940-mRNA-1:cds;Parent=Msa0012940-mRNA-1
chr1_1 CDS 19954849 19954944 19954849 ID=Msa0012940-mRNA-1:cds;Parent=Msa0012940-mRNA-1
chr1_1 CDS 19955390 19955487 19955390 ID=Msa0012940-mRNA-1:cds;Parent=Msa0012940-mRNA-1
chr1_1 CDS 19955615 19955732 19955615 ID=Msa0012940-mRNA-1:cds;Parent=Msa0012940-mRNA-1
chr1_1 CDS 19956682 19956792 19956682 ID=Msa0012940-mRNA-1:cds;Parent=Msa0012940-mRNA-1
chr1_1 CDS 19956884 19956996 19956884 ID=Msa0012940-mRNA-1:cds;Parent=Msa0012940-mRNA-1
chr1_1 CDS 19957108 19957262 19957108 ID=Msa0012940-mRNA-1:cds;Parent=Msa0012940-mRNA-1
chr1_1 CDS 19958564 19959251 19958564 ID=Msa0012940-mRNA-1:cds;Parent=Msa0012940-mRNA-1
chr1_1 three_prime_UTR 19959252 19959523 19959252 ID=Msa0012940-mRNA-1:three_prime_utr;Parent=Msa0012940-mRNA-1
Gene Sequence

>Msa0012940

ATGGCAATGCCAATGGGAAATGCAGTAACACCGGAAATTAAGCATTTTCCGGCGGTGGTTACCGCCGGTGAGATGCAGTACAGACCACCACCACAGCAACAGCAGCAACATCAACAACAATGGTTTGTTGATGAGAGAGATGGGTTTATGAATTGGATTCGTAGCGAATTCGCGGCTGCGAATGCTATTATTGATTGTTTGTGTCAGCATTTAGGTGTTATTGGGGAGAGTGGTGAGTATGATCATGTTGTTGGTGCAATTCAGCAGAGGAGGGTTAATTGGAATCAAGTGTTGCTTATGCAGCAGTATTTTTCGGTTAACGAGGTTGCGTACGCGTTGCAGCAGGTGGCGTGGAGGCGGCAGCAGAGGTTTGTGAAGCCGGTTGTTAAGGAGTTTAGGAAGGGTAGGCAATGGCAGAGGTTTGAGGGTGGGAATGGTAAGGAAGGGAGTAATTCTAGTGTAGAAAATCATCGTCGTGGTGAAGGGAATTTTGTGGTTAAAGGGTCTCAAGTAGTTGATAAGAGTGAAGAAGTTAAATCTGGTGGCAAAGTTGGATATAAGGATGATAAGAATTTAGACACTGCTGAGGAGAAGAAAGATGCTATAAAAAATCATCAATCTGATGGCCTTTTGAAGAGCTCTGGAAATTCTCAAGGATCTCTGTCAAGCACAGAATGTGCATCAAATTCTGGAGAAAATGATTCACATTCTATGCAAAATCAACAACAGAACGTGAGTGGTTCCACCACAGGAAAAACTTTTGTTAGCAATGAGATGTTTGATGGGAAGATGGTTAATGTTGTTGAAGGACTGAGGTTGTACGAAGATTTATTTAATAGTACTGAAGTTTCAAAACTTGGTTCATTGGTCAATGATTTAAGGGTTGCTGGAAGAAAAGGACAATTTCAAGGGAGTCCGACATATGTGGTTAACAAAAGGCCCATAAGAGGACATGGAAGAGAGATGATTCAGTTGGGTGTTCCAATTGCTGACGTGGACAATGTGACAGCGTCGTTCAAAGATAAGAATGTGGAATCTATGCCTTCCTTGTTTCAAGATATCATTGAGCGCATGGCTGCCTCACAAGTCATGTCTGTTAAGCCTGATGCTTGCATCGTCGATTTCTATAATGAGGGTGACCACTCAACGCCAAACATTTGGCCGTCTTCATTTGGAAGGCCTGTTTATACGCTTTTCCTGACTGAATGTGACATGACTTTTGGGAGAACATTTGTCTCAGAGCACTTTGGGGATTATAAAAGCAATGTCAAGCTTTCTCTTGGACCTGGGTCCCTTCTAGTGATGCAAGGGAAATCAGCTGATTTTGCGAAACATGCTATTCCTTCTATTCACAAACAACGCATTCTTGTTACTTTTGCAAAGTCTCAACCAAAAAAGTCTCTGCCAAGTGATGCTCAAGGTCTTGCTCCGTCAGCAACTTCACATTGGTCACCCGCACCAAACAGATCTCCGAATCATATTAGTCATCGTCCGTTAGCTCCCAAGCATTATTCTGCTGTTCAAGTAACCGGGGTGCTGCCGGCTCCATCCCTACATGTTGCTCCTAATAGCATGCAGCCATTGTTTGTCCCAGCGCCAGTTGCAACTCCCATACAATTTGCTACACCTGTGCCAATCCCGCCTGGCTCTACAGGATGGACTGTGGCTCCTCCAAGGCATCCTCCTCCTCGAGTCGTTGTTCCCGGCACAGGAGTCTTCCTTCCGCCTGGCTCTGCTAACTCATCTCAGCACTCACAAGGTACCTTAACTGAAGTGAACTTGGGTGTTGAAATTCCAACCTCTACGATAAAGGAAAATGGGAAATCTAATCATAGCAATACTAATGGTTCACCAAAAGGTAAAATGAATGGAAATATTGAAAGACAAGAATGCAATGGTAATGCAAGTGCAACTGAAGTTGAACAGGCTATAGAGGAAAAAGGTGAAAGCAATGCAGAAACTGTTGCAAGCCAATGA
Protein sequence

>Msa0012940

MAMPMGNAVTPEIKHFPAVVTAGEMQYRPPPQQQQQHQQQWFVDERDGFMNWIRSEFAAANAIIDCLCQHLGVIGESGEYDHVVGAIQQRRVNWNQVLLMQQYFSVNEVAYALQQVAWRRQQRFVKPVVKEFRKGRQWQRFEGGNGKEGSNSSVENHRRGEGNFVVKGSQVVDKSEEVKSGGKVGYKDDKNLDTAEEKKDAIKNHQSDGLLKSSGNSQGSLSSTECASNSGENDSHSMQNQQQNVSGSTTGKTFVSNEMFDGKMVNVVEGLRLYEDLFNSTEVSKLGSLVNDLRVAGRKGQFQGSPTYVVNKRPIRGHGREMIQLGVPIADVDNVTASFKDKNVESMPSLFQDIIERMAASQVMSVKPDACIVDFYNEGDHSTPNIWPSSFGRPVYTLFLTECDMTFGRTFVSEHFGDYKSNVKLSLGPGSLLVMQGKSADFAKHAIPSIHKQRILVTFAKSQPKKSLPSDAQGLAPSATSHWSPAPNRSPNHISHRPLAPKHYSAVQVTGVLPAPSLHVAPNSMQPLFVPAPVATPIQFATPVPIPPGSTGWTVAPPRHPPPRVVVPGTGVFLPPGSANSSQHSQGTLTEVNLGVEIPTSTIKENGKSNHSNTNGSPKGKMNGNIERQECNGNASATEVEQAIEEKGESNAETVASQ*