AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0712590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712590 MtrunA17_Chr5g0397231 98.235 340 3 2 1 338 1 339 0.0 687
Msa0712590 MtrunA17_Chr8g0387421 61.207 348 88 15 1 336 1 313 1.11e-120 350
Msa0712590 MtrunA17_Chr8g0342521 72.180 133 36 1 1 133 1 132 4.42e-67 214
Msa0712590 MtrunA17_Chr8g0342541 78.448 116 25 0 1 116 1 116 1.43e-66 213
Msa0712590 MtrunA17_Chr2g0330041 45.290 276 106 7 1 245 1 262 2.93e-64 208
Msa0712590 MtrunA17_Chr4g0058631 52.475 202 67 4 1 178 1 197 3.18e-64 207
Msa0712590 MtrunA17_Chr1g0193371 72.269 119 33 0 1 119 1 119 2.34e-63 205
Msa0712590 MtrunA17_Chr1g0193801 71.186 118 34 0 1 118 1 118 8.10e-63 204
Msa0712590 MtrunA17_Chr7g0270891 72.034 118 33 0 1 118 1 118 4.80e-62 202
Msa0712590 MtrunA17_Chr2g0309911 74.138 116 29 1 1 116 1 115 2.01e-61 198
Msa0712590 MtrunA17_Chr8g0342481 68.148 135 40 3 1 134 1 133 3.01e-61 201
Msa0712590 MtrunA17_Chr1g0211161 62.238 143 44 1 3 145 4 136 4.12e-60 192
Msa0712590 MtrunA17_Chr3g0117091 70.339 118 35 0 1 118 1 118 1.08e-59 195
Msa0712590 MtrunA17_Chr5g0410961 55.844 154 67 1 1 154 1 153 8.89e-58 190
Msa0712590 MtrunA17_Chr7g0271241 72.477 109 30 0 1 109 1 109 2.07e-57 190
Msa0712590 MtrunA17_Chr2g0323411 45.161 217 97 4 1 217 1 195 1.22e-55 184
Msa0712590 MtrunA17_Chr1g0203411 66.387 119 40 0 1 119 1 119 3.59e-55 182
Msa0712590 MtrunA17_Chr3g0088461 67.273 110 36 0 8 117 18 127 4.32e-55 183
Msa0712590 MtrunA17_Chr4g0032401 50.556 180 71 5 11 172 16 195 1.64e-54 181
Msa0712590 MtrunA17_Chr4g0039971 58.647 133 54 1 1 133 2 133 1.67e-53 179
Msa0712590 MtrunA17_Chr6g0452271 61.864 118 45 0 1 118 1 118 2.65e-53 178
Msa0712590 MtrunA17_Chr2g0328771 58.696 138 53 2 12 145 20 157 3.57e-53 177
Msa0712590 MtrunA17_Chr8g0385321 65.517 116 40 0 1 116 1 116 1.10e-52 176
Msa0712590 MtrunA17_Chr6g0453471 61.864 118 45 0 1 118 1 118 1.28e-52 177
Msa0712590 MtrunA17_Chr5g0435101 63.717 113 41 0 6 118 5 117 4.18e-52 171
Msa0712590 MtrunA17_Chr4g0048511 55.479 146 57 2 1 145 1 139 4.86e-52 176
Msa0712590 MtrunA17_Chr3g0115821 60.345 116 46 0 1 116 1 116 5.99e-52 175
Msa0712590 MtrunA17_Chr3g0131121 62.069 116 44 0 1 116 1 116 1.37e-51 172
Msa0712590 MtrunA17_Chr2g0281071 63.025 119 43 1 1 118 1 119 2.38e-51 173
Msa0712590 MtrunA17_Chr4g0037141 61.207 116 45 0 1 116 1 116 3.64e-51 171
Msa0712590 MtrunA17_Chr1g0203441 66.055 109 37 0 11 119 12 120 3.78e-51 171
Msa0712590 MtrunA17_Chr3g0110351 61.864 118 45 0 1 118 1 118 1.44e-50 170
Msa0712590 MtrunA17_Chr1g0151941 61.538 117 44 1 1 116 1 117 1.96e-50 168
Msa0712590 MtrunA17_Chr7g0217741 60.169 118 47 0 1 118 1 118 2.40e-50 170
Msa0712590 MtrunA17_Chr7g0274581 43.478 207 101 5 1 206 1 192 3.39e-50 166
Msa0712590 MtrunA17_Chr5g0434571 61.864 118 45 0 1 118 37 154 3.87e-50 171
Msa0712590 MtrunA17_Chr4g0042671 56.391 133 57 1 1 133 1 132 7.35e-50 171
Msa0712590 MtrunA17_Chr4g0057031 62.712 118 44 0 1 118 1 118 1.02e-49 167
Msa0712590 MtrunA17_Chr7g0217221 61.157 121 47 0 1 121 1 121 1.74e-49 166
Msa0712590 MtrunA17_Chr4g0070611 53.623 138 64 0 1 138 1 138 2.18e-49 167
Msa0712590 MtrunA17_Chr7g0228891 62.393 117 44 0 1 117 1 117 2.57e-49 166
Msa0712590 MtrunA17_Chr1g0187761 58.647 133 53 1 1 131 1 133 3.14e-49 165
Msa0712590 MtrunA17_Chr5g0395281 59.524 126 50 1 8 133 8 132 3.21e-49 167
Msa0712590 MtrunA17_Chr8g0349261 55.102 147 63 3 1 145 1 146 5.40e-49 166
Msa0712590 MtrunA17_Chr4g0068061 61.207 116 45 0 1 116 1 116 1.16e-48 166
Msa0712590 MtrunA17_Chr8g0342531 72.340 94 26 0 1 94 1 94 1.33e-48 160
Msa0712590 MtrunA17_Chr4g0070641 53.623 138 64 0 1 138 1 138 1.67e-48 160
Msa0712590 MtrunA17_Chr7g0275911 58.974 117 48 0 1 117 1 117 2.14e-48 163
Msa0712590 MtrunA17_Chr8g0342511 77.011 87 20 0 1 87 1 87 4.10e-48 157
Msa0712590 MtrunA17_Chr6g0470971 65.138 109 38 0 11 119 13 121 4.49e-48 163
Msa0712590 MtrunA17_Chr4g0028311 51.948 154 66 2 1 153 1 147 1.13e-47 163
Msa0712590 MtrunA17_Chr3g0103281 59.483 116 47 0 1 116 1 116 6.98e-47 161
Msa0712590 MtrunA17_Chr8g0346561 52.174 138 62 1 1 138 1 134 7.80e-47 160
Msa0712590 MtrunA17_Chr4g0060721 53.191 141 62 1 1 141 2 138 8.26e-47 161
Msa0712590 MtrunA17_Chr2g0311221 62.385 109 41 0 2 110 4 112 9.53e-47 161
Msa0712590 MtrunA17_Chr2g0323351 52.593 135 62 1 7 139 7 141 1.24e-46 158
Msa0712590 MtrunA17_Chr7g0254411 59.322 118 48 0 1 118 1 118 8.31e-46 159
Msa0712590 MtrunA17_Chr3g0135311 59.829 117 46 1 1 116 1 117 9.25e-46 159
Msa0712590 MtrunA17_Chr1g0167661 53.125 128 60 0 1 128 1 128 1.32e-45 155
Msa0712590 MtrunA17_Chr7g0261281 57.759 116 49 0 1 116 1 116 1.48e-45 156
Msa0712590 MtrunA17_Chr7g0264641 58.120 117 48 1 1 116 1 117 2.26e-45 155
Msa0712590 MtrunA17_Chr1g0194951 52.174 138 66 0 1 138 1 138 2.95e-45 158
Msa0712590 MtrunA17_Chr4g0044421 57.500 120 51 0 1 120 1 120 3.42e-45 152
Msa0712590 MtrunA17_Chr4g0022931 58.036 112 47 0 5 116 6 117 3.93e-45 155
Msa0712590 MtrunA17_Chr1g0152011 58.120 117 48 1 1 116 1 117 4.13e-45 157
Msa0712590 MtrunA17_Chr2g0327351 59.459 111 44 1 1 110 1 111 4.80e-45 156
Msa0712590 MtrunA17_Chr7g0228231 57.258 124 51 1 1 122 1 124 4.98e-45 153
Msa0712590 MtrunA17_Chr8g0342461 69.474 95 28 1 1 94 1 95 7.04e-45 150
Msa0712590 MtrunA17_Chr5g0400821 58.120 117 48 1 1 116 1 117 8.17e-45 155
Msa0712590 MtrunA17_Chr1g0167691 57.759 116 49 0 1 116 1 116 8.64e-45 154
Msa0712590 MtrunA17_Chr3g0121241 58.559 111 46 0 6 116 36 146 9.20e-45 155
Msa0712590 MtrunA17_Chr3g0092401 60.177 113 45 0 6 118 7 119 1.03e-44 155
Msa0712590 MtrunA17_Chr8g0342471 70.652 92 26 1 1 91 1 92 2.47e-44 149
Msa0712590 MtrunA17_Chr6g0453211 61.321 106 41 0 6 111 6 111 3.71e-44 154
Msa0712590 MtrunA17_Chr4g0022901 57.658 111 47 0 5 115 6 116 9.53e-44 151
Msa0712590 MtrunA17_Chr4g0022911 56.757 111 48 0 5 115 6 116 1.12e-43 152
Msa0712590 MtrunA17_Chr4g0054391 60.000 110 43 1 1 109 1 110 6.35e-43 150
Msa0712590 MtrunA17_Chr4g0072751 59.459 111 44 1 1 110 1 111 9.13e-43 151
Msa0712590 MtrunA17_Chr6g0450101 56.667 120 50 1 1 118 1 120 1.02e-42 147
Msa0712590 MtrunA17_Chr1g0209661 57.273 110 47 0 9 118 24 133 1.97e-42 149
Msa0712590 MtrunA17_Chr6g0487491 52.672 131 53 2 1 122 1 131 1.16e-41 145
Msa0712590 MtrunA17_Chr8g0343831 56.881 109 47 0 10 118 6 114 2.18e-41 145
Msa0712590 MtrunA17_Chr7g0269831 58.621 116 48 0 1 116 1 116 4.74e-41 147
Msa0712590 MtrunA17_Chr4g0055981 59.813 107 43 0 9 115 52 158 6.19e-41 143
Msa0712590 MtrunA17_Chr5g0417821 59.048 105 43 0 12 116 7 111 1.54e-40 144
Msa0712590 MtrunA17_Chr1g0168661 52.500 120 57 0 4 123 13 132 6.27e-40 141
Msa0712590 MtrunA17_Chr1g0194291 54.701 117 53 0 2 118 11 127 6.68e-40 141
Msa0712590 MtrunA17_Chr3g0099131 57.944 107 45 0 12 118 41 147 6.75e-40 147
Msa0712590 MtrunA17_Chr4g0022881 56.075 107 47 0 8 114 8 114 2.34e-39 139
Msa0712590 MtrunA17_Chr4g0022891 55.660 106 47 0 8 113 8 113 2.80e-39 139
Msa0712590 MtrunA17_Chr8g0354661 56.604 106 46 0 12 117 37 142 4.00e-39 145
Msa0712590 MtrunA17_Chr3g0080861 56.604 106 46 0 12 117 37 142 6.21e-39 144
Msa0712590 MtrunA17_Chr1g0186061 52.101 119 57 0 5 123 13 131 6.87e-39 138
Msa0712590 MtrunA17_Chr1g0194301 55.140 107 48 0 12 118 33 139 4.72e-38 137
Msa0712590 MtrunA17_Chr7g0247131 74.324 74 19 0 44 117 10 83 5.84e-37 134
Msa0712590 MtrunA17_Chr1g0154031 55.660 106 47 0 12 117 76 181 9.08e-37 137
Msa0712590 MtrunA17_Chr4g0042611 59.091 88 36 0 1 88 1 88 7.45e-36 125
Msa0712590 MtrunA17_Chr8g0360111 56.436 101 44 0 8 108 21 121 9.33e-36 130
Msa0712590 MtrunA17_Chr7g0240821 56.000 100 44 0 17 116 6 105 2.81e-35 128
Msa0712590 MtrunA17_Chr4g0068921 59.223 103 42 0 12 114 24 126 4.24e-35 126
Msa0712590 MtrunA17_Chr2g0327821 45.238 126 65 1 9 134 3 124 4.24e-35 128
Msa0712590 MtrunA17_Chr1g0180391 47.826 115 60 0 3 117 10 124 1.16e-34 126
Msa0712590 MtrunA17_Chr2g0322521 55.660 106 47 0 12 117 29 134 1.94e-34 130
Msa0712590 MtrunA17_Chr2g0293911 57.009 107 46 0 12 118 24 130 2.24e-34 128
Msa0712590 MtrunA17_Chr7g0220341 44.681 141 74 2 8 144 21 161 2.65e-34 127
Msa0712590 MtrunA17_Chr5g0434911 49.091 110 56 0 7 116 16 125 6.67e-34 125
Msa0712590 MtrunA17_Chr5g0434931 50.476 105 52 0 12 116 35 139 2.13e-33 124
Msa0712590 MtrunA17_Chr8g0334881 49.565 115 57 1 4 117 2 116 2.44e-33 125
Msa0712590 MtrunA17_Chr4g0030881 47.009 117 55 1 6 115 1 117 3.17e-33 123
Msa0712590 MtrunA17_Chr1g0192411 41.212 165 86 3 11 171 11 168 4.37e-33 126
Msa0712590 MtrunA17_Chr5g0434831 50.476 105 52 0 12 116 7 111 4.90e-32 118
Msa0712590 MtrunA17_Chr4g0013361 49.533 107 53 1 12 117 10 116 7.69e-32 120
Msa0712590 MtrunA17_Chr7g0228991 49.533 107 54 0 10 116 27 133 1.07e-31 120
Msa0712590 MtrunA17_Chr5g0440781 49.074 108 53 2 12 118 12 118 3.60e-31 116
Msa0712590 MtrunA17_Chr2g0294811 55.682 88 39 0 1 88 1 88 4.40e-31 114
Msa0712590 MtrunA17_Chr5g0440761 49.533 107 52 2 13 118 13 118 8.80e-31 117
Msa0712590 MtrunA17_Chr5g0441141 45.378 119 64 1 12 129 12 130 9.29e-31 117
Msa0712590 MtrunA17_Chr5g0434841 47.664 107 56 0 10 116 18 124 1.69e-30 117
Msa0712590 MtrunA17_Chr5g0395221 62.338 77 29 0 12 88 12 88 2.32e-30 110
Msa0712590 MtrunA17_Chr2g0323321 54.651 86 39 0 7 92 6 91 2.80e-29 108
Msa0712590 MtrunA17_Chr5g0441131 39.474 152 85 3 12 162 9 154 5.76e-29 110
Msa0712590 MtrunA17_Chr5g0429661 39.744 156 83 4 14 169 122 266 1.75e-28 113
Msa0712590 MtrunA17_Chr5g0401731 48.696 115 56 2 3 115 2 115 4.22e-28 111
Msa0712590 MtrunA17_Chr3g0099141 50.575 87 43 0 8 94 36 122 6.31e-28 106
Msa0712590 MtrunA17_Chr4g0008551 50.476 105 50 2 11 115 36 138 1.01e-27 110
Msa0712590 MtrunA17_Chr6g0454921 51.961 102 48 1 14 115 15 115 1.59e-27 107
Msa0712590 MtrunA17_Chr4g0053431 50.980 102 49 1 14 115 5 105 3.85e-27 107
Msa0712590 MtrunA17_Chr6g0480581 45.161 124 58 3 14 134 4 120 1.58e-26 105
Msa0712590 MtrunA17_Chr4g0042501 43.802 121 62 2 2 122 98 212 7.60e-26 107
Msa0712590 MtrunA17_Chr5g0417621 45.536 112 60 1 11 122 131 241 1.51e-25 106
Msa0712590 MtrunA17_Chr6g0460661 44.860 107 56 2 17 122 19 123 4.54e-25 99.4
Msa0712590 MtrunA17_Chr3g0133601 48.182 110 54 2 8 115 29 137 7.88e-25 100
Msa0712590 MtrunA17_Chr5g0437321 44.800 125 59 3 8 128 14 132 1.16e-24 101
Msa0712590 MtrunA17_Chr7g0238631 47.573 103 53 1 14 116 113 214 2.22e-24 103
Msa0712590 MtrunA17_Chr4g0058991 43.119 109 61 1 12 120 207 314 2.85e-24 102
Msa0712590 MtrunA17_Chr3g0117511 42.478 113 62 2 14 124 183 294 3.76e-24 102
Msa0712590 MtrunA17_Chr3g0139671 46.602 103 54 1 14 116 85 186 2.26e-23 101
Msa0712590 MtrunA17_Chr3g0125801 49.074 108 52 2 14 120 16 121 3.55e-23 97.4
Msa0712590 MtrunA17_Chr7g0229101 59.701 67 27 0 44 110 4 70 4.58e-23 95.1
Msa0712590 MtrunA17_Chr1g0177901 37.313 134 83 1 25 158 5 137 5.42e-23 95.1
Msa0712590 MtrunA17_Chr7g0229131 54.167 72 33 0 45 116 5 76 6.51e-23 94.0
Msa0712590 MtrunA17_Chr1g0157731 45.631 103 55 1 14 116 91 192 1.27e-22 99.0
Msa0712590 MtrunA17_Chr7g0228531 32.353 204 112 7 12 194 218 416 4.04e-22 96.7
Msa0712590 MtrunA17_Chr5g0434901 58.462 65 27 0 46 110 7 71 7.25e-22 89.4
Msa0712590 MtrunA17_Chr6g0460671 43.119 109 61 1 14 122 99 206 1.63e-21 94.0
Msa0712590 MtrunA17_Chr6g0453751 46.154 91 40 2 12 93 20 110 3.08e-21 88.2
Msa0712590 MtrunA17_Chr5g0425591 48.780 82 41 1 13 93 10 91 4.57e-21 86.3
Msa0712590 MtrunA17_Chr3g0093811 52.055 73 35 0 44 116 14 86 4.59e-21 91.3
Msa0712590 MtrunA17_Chr5g0397841 45.098 102 54 2 8 109 105 204 8.85e-21 92.8
Msa0712590 MtrunA17_Chr7g0228401 45.545 101 51 2 25 125 290 386 1.36e-20 92.4
Msa0712590 MtrunA17_Chr7g0238651 36.000 125 78 1 14 136 7 131 1.07e-19 89.0
Msa0712590 MtrunA17_Chr7g0228481 28.856 201 123 5 12 194 218 416 1.74e-19 89.0
Msa0712590 MtrunA17_Chr7g0254261 40.678 118 64 2 1 118 81 192 1.90e-19 88.2
Msa0712590 MtrunA17_Chr5g0416341 34.862 109 70 1 17 125 29 136 2.85e-17 82.4
Msa0712590 MtrunA17_Chr7g0233061 43.000 100 48 4 14 110 180 273 3.67e-17 81.6
Msa0712590 MtrunA17_Chr1g0193901 51.471 68 33 0 1 68 1 68 2.14e-16 74.3
Msa0712590 MtrunA17_Chr1g0193891 51.471 68 33 0 1 68 1 68 2.14e-16 74.3
Msa0712590 MtrunA17_Chr1g0193871 51.471 68 33 0 1 68 1 68 2.14e-16 74.3
Msa0712590 MtrunA17_Chr1g0193881 51.471 68 33 0 1 68 1 68 2.14e-16 74.3
Msa0712590 MtrunA17_Chr8g0362231 35.398 113 70 2 17 127 25 136 1.24e-15 77.4
Msa0712590 MtrunA17_Chr3g0104491 34.211 76 46 1 53 124 1 76 9.50e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0712590 AT1G63910.1 50.418 359 124 11 1 316 1 348 4.52e-98 295
Msa0712590 AT3G13890.2 77.586 116 26 0 1 116 1 116 8.99e-67 214
Msa0712590 AT5G26660.1 58.182 165 59 3 1 164 1 156 9.12e-64 206
Msa0712590 AT3G13890.1 72.000 125 26 1 1 116 1 125 1.46e-63 206
Msa0712590 AT4G01680.3 73.504 117 31 0 1 117 1 117 1.61e-63 202
Msa0712590 AT1G09540.1 73.729 118 31 0 1 118 1 118 3.74e-63 205
Msa0712590 AT4G01680.1 73.504 117 31 0 1 117 1 117 5.64e-63 204
Msa0712590 AT1G57560.1 71.186 118 34 0 1 118 1 118 1.36e-61 199
Msa0712590 AT1G57560.2 71.186 118 34 0 1 118 1 118 2.48e-61 197
Msa0712590 AT3G12720.1 74.138 116 29 1 1 116 12 126 5.70e-61 197
Msa0712590 AT4G01680.2 66.667 129 31 1 1 117 1 129 1.57e-59 195
Msa0712590 AT5G12870.1 66.372 113 38 0 10 122 16 128 9.19e-55 181
Msa0712590 AT3G01140.2 64.407 118 42 0 1 118 1 118 3.85e-54 181
Msa0712590 AT3G08500.1 63.559 118 40 1 3 117 18 135 1.93e-53 179
Msa0712590 AT3G02940.2 63.793 116 42 0 1 116 1 116 2.18e-53 178
Msa0712590 AT4G05100.1 63.866 119 42 1 1 118 1 119 3.17e-53 178
Msa0712590 AT3G02940.1 63.793 116 42 0 1 116 1 116 6.44e-53 177
Msa0712590 AT3G02940.3 63.793 116 42 0 1 116 1 116 6.44e-53 177
Msa0712590 AT5G16770.4 52.121 165 73 3 1 160 1 164 9.96e-53 177
Msa0712590 AT5G16770.3 52.121 165 73 3 1 160 1 164 9.96e-53 177
Msa0712590 AT5G15310.1 62.712 118 44 0 1 118 1 118 1.13e-52 177
Msa0712590 AT5G60890.1 61.017 118 46 0 6 123 6 123 1.18e-52 176
Msa0712590 AT5G15310.4 62.712 118 44 0 1 118 1 118 1.26e-52 174
Msa0712590 AT5G15310.2 62.712 118 44 0 1 118 1 118 1.63e-52 176
Msa0712590 AT5G16770.1 52.121 165 73 3 1 160 1 164 2.08e-52 176
Msa0712590 AT5G16770.2 52.121 165 73 3 1 160 1 164 2.08e-52 176
Msa0712590 AT3G01140.1 65.487 113 39 0 6 118 49 161 3.10e-52 177
Msa0712590 AT4G28110.1 62.185 119 45 0 1 119 1 119 7.44e-52 173
Msa0712590 AT4G21440.1 54.483 145 59 2 1 145 1 138 9.45e-52 175
Msa0712590 AT4G34990.1 62.931 116 43 0 1 116 1 116 1.37e-51 172
Msa0712590 AT2G16720.1 61.207 116 45 0 1 116 1 116 2.47e-51 171
Msa0712590 AT4G38620.1 61.207 116 45 0 1 116 1 116 3.90e-51 171
Msa0712590 AT4G17785.2 63.248 117 42 1 1 116 1 117 4.89e-51 173
Msa0712590 AT4G17785.1 63.248 117 42 1 1 116 1 117 5.29e-51 173
Msa0712590 AT5G65230.1 62.069 116 44 0 1 116 1 116 1.09e-50 171
Msa0712590 AT2G31180.1 40.741 216 116 2 1 204 1 216 1.24e-50 169
Msa0712590 AT4G09460.1 59.483 116 47 0 1 116 1 116 2.21e-50 168
Msa0712590 AT1G34670.1 60.345 116 46 0 1 116 1 116 2.25e-50 172
Msa0712590 AT1G22640.1 61.207 116 45 0 1 116 1 116 2.72e-50 168
Msa0712590 AT5G10280.1 58.621 116 48 0 1 116 1 116 3.09e-50 171
Msa0712590 AT1G66230.1 61.864 118 45 0 1 118 1 118 3.45e-50 169
Msa0712590 AT3G61250.1 61.207 116 45 0 1 116 1 116 3.85e-50 169
Msa0712590 AT4G12350.1 60.169 118 47 0 1 118 1 118 6.03e-50 168
Msa0712590 AT5G54230.1 63.559 118 43 0 1 118 1 118 1.11e-49 169
Msa0712590 AT3G23250.1 55.906 127 56 0 1 127 1 127 1.53e-49 167
Msa0712590 AT5G16600.1 61.017 118 46 0 1 118 1 118 2.34e-49 168
Msa0712590 AT1G06180.1 45.178 197 98 2 1 189 1 195 2.54e-49 166
Msa0712590 AT1G79180.1 58.594 128 53 0 2 129 4 131 3.23e-49 167
Msa0712590 AT1G18570.1 62.931 116 42 1 6 120 6 121 4.59e-49 168
Msa0712590 AT4G22680.1 60.169 118 47 0 1 118 1 118 1.02e-48 164
Msa0712590 AT5G61420.2 59.483 116 47 0 1 116 1 116 1.15e-48 167
Msa0712590 AT5G49330.1 62.069 116 44 0 1 116 1 116 1.32e-48 166
Msa0712590 AT5G07690.1 61.404 114 44 0 1 114 1 114 1.94e-48 166
Msa0712590 AT2G47460.1 59.524 126 47 1 1 122 1 126 6.77e-48 166
Msa0712590 AT1G35515.1 58.621 116 48 0 1 116 1 116 7.46e-48 160
Msa0712590 AT5G07700.1 59.483 116 47 0 1 116 1 116 1.89e-47 163
Msa0712590 AT5G07700.2 59.483 116 47 0 1 116 1 116 1.89e-47 163
Msa0712590 AT5G56110.1 59.483 116 47 0 1 116 1 116 2.24e-47 162
Msa0712590 AT5G23000.1 60.684 117 45 1 1 116 1 117 2.44e-47 163
Msa0712590 AT1G08810.1 59.504 121 49 0 1 121 1 121 3.28e-47 161
Msa0712590 AT3G47600.1 59.016 122 50 0 1 122 1 122 3.47e-47 162
Msa0712590 AT2G36890.1 55.882 136 51 2 1 135 1 128 1.25e-46 160
Msa0712590 AT3G62610.1 59.483 116 47 0 1 116 1 116 1.29e-46 161
Msa0712590 AT1G74430.1 55.833 120 53 0 1 120 1 120 1.54e-46 159
Msa0712590 AT5G14340.1 59.829 117 47 0 1 117 13 129 1.85e-46 159
Msa0712590 AT2G36890.2 55.882 136 51 2 1 135 42 169 1.92e-46 160
Msa0712590 AT5G62470.2 58.537 123 51 0 1 123 1 123 3.41e-46 160
Msa0712590 AT1G56160.1 60.000 115 46 0 2 116 4 118 3.47e-46 159
Msa0712590 AT1G74650.1 61.207 116 45 0 1 116 1 116 4.75e-46 159
Msa0712590 AT1G74080.1 51.799 139 61 1 6 138 6 144 6.05e-46 159
Msa0712590 AT1G16490.1 57.480 127 50 1 2 128 4 126 6.27e-46 157
Msa0712590 AT3G27810.1 43.646 181 94 2 9 185 17 193 6.27e-46 156
Msa0712590 AT5G57620.1 58.120 117 48 1 1 116 1 117 1.90e-45 158
Msa0712590 AT3G49690.1 58.974 117 47 1 1 116 1 117 2.17e-45 157
Msa0712590 AT3G28470.1 57.273 110 47 0 1 110 1 110 3.86e-45 157
Msa0712590 AT3G48920.1 57.798 109 46 0 8 116 14 122 1.32e-44 154
Msa0712590 AT3G28910.1 61.062 113 44 0 6 118 6 118 1.59e-44 155
Msa0712590 AT1G18710.1 50.000 146 63 1 1 146 1 136 1.72e-44 154
Msa0712590 AT5G52260.1 52.083 144 50 1 9 133 9 152 2.23e-44 153
Msa0712590 AT5G62470.1 58.537 123 50 1 1 123 1 122 2.24e-44 155
Msa0712590 AT4G25560.1 60.714 112 44 0 10 121 8 119 2.62e-44 154
Msa0712590 AT5G40350.1 55.556 126 54 1 11 134 16 141 3.11e-44 151
Msa0712590 AT5G65790.1 57.265 117 49 1 1 116 1 117 4.98e-44 155
Msa0712590 AT3G13540.1 57.658 111 47 0 6 116 17 127 5.10e-44 152
Msa0712590 AT5G35550.1 46.012 163 84 1 9 171 11 169 8.59e-44 151
Msa0712590 AT4G37780.1 54.032 124 56 1 1 123 1 124 1.40e-43 152
Msa0712590 AT5G62320.1 54.098 122 49 1 2 116 3 124 2.33e-43 150
Msa0712590 AT5G52600.1 57.522 113 48 0 12 124 12 124 4.87e-43 148
Msa0712590 AT3G01530.1 54.400 125 50 1 12 136 25 142 4.96e-43 148
Msa0712590 AT5G40330.1 56.481 108 47 0 9 116 9 116 6.89e-43 148
Msa0712590 AT3G12820.1 59.292 113 46 0 6 118 8 120 7.08e-43 149
Msa0712590 AT5G14750.1 57.692 104 44 0 13 116 17 120 8.44e-43 147
Msa0712590 AT3G27920.1 55.263 114 51 0 10 123 12 125 1.12e-42 147
Msa0712590 AT1G79180.2 46.584 161 53 1 2 129 4 164 1.23e-42 150
Msa0712590 AT1G48000.1 48.630 146 72 2 11 154 31 175 7.86e-41 143
Msa0712590 AT4G13480.1 50.794 126 62 0 13 138 7 132 9.02e-41 144
Msa0712590 AT2G32460.1 56.481 108 47 0 10 117 16 123 2.20e-40 148
Msa0712590 AT4G26930.1 57.944 107 45 0 12 118 19 125 2.27e-40 146
Msa0712590 AT2G32460.2 56.481 108 47 0 10 117 4 111 2.61e-40 147
Msa0712590 AT5G06100.1 58.491 106 44 0 12 117 32 137 5.97e-40 146
Msa0712590 AT3G24310.1 57.658 111 47 0 13 123 19 129 1.83e-39 140
Msa0712590 AT5G06100.5 58.491 106 44 0 12 117 32 137 2.16e-39 146
Msa0712590 AT5G06100.2 58.491 106 44 0 12 117 32 137 2.16e-39 146
Msa0712590 AT5G06100.3 58.491 106 44 0 12 117 32 137 2.16e-39 146
Msa0712590 AT5G06100.4 58.491 106 44 0 12 117 32 137 2.16e-39 146
Msa0712590 AT3G30210.1 57.407 108 46 0 13 120 28 135 2.74e-39 140
Msa0712590 AT1G68320.1 56.881 109 47 0 10 118 17 125 2.91e-39 140
Msa0712590 AT5G55020.1 55.140 107 48 0 12 118 26 132 7.27e-39 144
Msa0712590 AT3G11440.2 55.660 106 47 0 12 117 41 146 2.09e-38 142
Msa0712590 AT2G26960.1 42.384 151 73 2 9 145 17 167 4.62e-38 140
Msa0712590 AT2G47190.1 46.923 130 68 1 12 140 20 149 5.77e-38 137
Msa0712590 AT3G11440.3 52.586 116 55 0 2 117 31 146 9.16e-38 142
Msa0712590 AT3G11440.4 52.586 116 55 0 2 117 31 146 9.16e-38 142
Msa0712590 AT3G11440.1 52.586 116 55 0 2 117 31 146 9.16e-38 142
Msa0712590 AT5G26660.2 51.181 127 52 3 39 164 8 125 5.70e-37 135
Msa0712590 AT1G25340.1 45.455 143 73 2 13 154 19 157 7.19e-37 134
Msa0712590 AT3G06490.1 57.658 111 47 0 8 118 15 125 7.50e-36 132
Msa0712590 AT3G27810.2 44.138 145 73 2 45 185 4 144 4.80e-34 124
Msa0712590 AT5G59780.3 50.467 107 53 0 9 115 5 111 7.04e-34 125
Msa0712590 AT1G66370.1 45.113 133 63 1 10 132 6 138 9.97e-34 125
Msa0712590 AT5G49620.1 56.364 110 48 0 9 118 23 132 1.01e-33 126
Msa0712590 AT3G53200.1 50.467 107 53 0 9 115 6 112 1.04e-32 122
Msa0712590 AT3G46130.1 50.485 103 51 0 13 115 10 112 1.39e-32 122
Msa0712590 AT5G40350.2 59.783 92 35 1 45 134 5 96 2.32e-32 119
Msa0712590 AT3G60460.1 47.321 112 58 1 7 117 6 117 2.79e-32 122
Msa0712590 AT1G25340.2 43.357 143 71 3 13 154 19 152 5.49e-32 121
Msa0712590 AT1G25340.3 43.357 143 71 3 13 154 19 152 8.81e-32 121
Msa0712590 AT1G66380.1 52.885 104 49 0 12 115 8 111 2.85e-31 115
Msa0712590 AT3G47600.2 55.556 99 40 1 24 122 22 116 4.23e-31 120
Msa0712590 AT1G66390.1 51.887 106 51 0 10 115 6 111 1.55e-30 116
Msa0712590 AT5G35550.2 62.500 80 30 0 45 124 50 129 1.64e-30 117
Msa0712590 AT2G26950.1 42.241 116 64 1 9 124 13 125 1.65e-30 119
Msa0712590 AT1G56650.1 50.943 106 52 0 10 115 6 111 2.30e-30 116
Msa0712590 AT5G49620.2 50.000 124 48 1 9 118 23 146 3.52e-30 117
Msa0712590 AT5G14750.3 63.768 69 25 0 48 116 18 86 1.21e-28 109
Msa0712590 AT3G12820.2 67.606 71 23 0 48 118 2 72 2.50e-28 109
Msa0712590 AT3G46130.3 62.500 72 27 0 44 115 9 80 1.04e-27 108
Msa0712590 AT5G59780.2 61.644 73 28 0 43 115 18 90 1.24e-27 108
Msa0712590 AT1G69560.1 47.154 123 60 3 3 122 94 214 1.50e-27 110
Msa0712590 AT1G69560.2 47.154 123 60 3 3 122 110 230 2.07e-27 110
Msa0712590 AT3G46130.4 61.644 73 28 0 43 115 18 90 2.50e-27 107
Msa0712590 AT3G27785.1 42.241 116 66 1 12 127 187 301 5.42e-26 107
Msa0712590 AT5G58850.1 44.828 116 59 2 14 125 105 219 6.41e-26 107
Msa0712590 AT5G11050.1 36.943 157 92 3 10 160 101 256 9.89e-26 107
Msa0712590 AT1G26780.1 47.321 112 56 2 12 122 96 205 1.95e-25 103
Msa0712590 AT3G53200.2 58.904 73 30 0 43 115 7 79 2.52e-25 101
Msa0712590 AT1G26780.2 47.321 112 56 2 12 122 96 205 2.85e-25 104
Msa0712590 AT5G40360.1 31.609 174 113 4 12 180 156 328 2.91e-25 104
Msa0712590 AT3G50060.1 43.200 125 68 2 14 138 6 127 1.22e-24 102
Msa0712590 AT1G17950.1 45.045 111 60 1 14 124 5 114 1.41e-24 100
Msa0712590 AT4G18770.1 42.241 116 64 2 14 127 217 331 1.93e-24 103
Msa0712590 AT4G37260.1 49.074 108 53 2 8 115 8 113 3.07e-24 101
Msa0712590 AT5G02320.1 48.544 103 52 1 14 116 127 228 3.89e-24 103
Msa0712590 AT5G02320.2 48.544 103 52 1 14 116 127 228 3.89e-24 103
Msa0712590 AT2G39880.1 48.148 108 54 2 8 115 45 150 4.38e-24 101
Msa0712590 AT5G02320.3 48.544 103 52 1 14 116 67 168 4.77e-24 102
Msa0712590 AT5G67300.1 49.020 102 51 1 14 115 6 106 6.33e-24 100
Msa0712590 AT2G23290.1 50.980 102 49 1 14 115 13 113 9.80e-24 99.8
Msa0712590 AT3G55730.1 49.533 107 52 2 9 115 52 156 1.23e-23 100
Msa0712590 AT3G29020.1 42.202 109 62 1 14 122 65 172 3.58e-23 96.7
Msa0712590 AT3G29020.2 42.202 109 62 1 14 122 67 174 4.67e-23 97.8
Msa0712590 AT3G09370.1 48.039 102 52 1 14 115 130 230 4.86e-23 100
Msa0712590 AT3G09370.2 48.039 102 52 1 14 115 135 235 4.96e-23 100
Msa0712590 AT3G09370.3 48.039 102 52 1 14 115 143 243 6.43e-23 99.8
Msa0712590 AT1G66380.3 59.155 71 29 0 45 115 8 78 7.35e-23 92.0
Msa0712590 AT3G09230.1 46.602 103 54 1 14 116 55 156 7.42e-23 98.6
Msa0712590 AT4G33450.1 38.686 137 80 2 13 149 18 150 9.49e-23 95.9
Msa0712590 AT5G11510.3 38.621 145 81 3 14 158 81 217 1.46e-22 99.4
Msa0712590 AT5G11510.1 38.621 145 81 3 14 158 81 217 1.46e-22 99.4
Msa0712590 AT5G11510.4 38.621 145 81 3 14 158 81 217 1.46e-22 99.4
Msa0712590 AT5G11510.5 44.545 110 60 1 14 123 81 189 1.53e-22 99.0
Msa0712590 AT5G11510.2 44.545 110 60 1 14 123 81 189 1.74e-22 99.0
Msa0712590 AT1G22640.3 66.102 59 20 0 58 116 1 59 3.48e-22 92.8
Msa0712590 AT1G73410.1 45.794 107 57 1 14 120 6 111 4.68e-22 93.6
Msa0712590 AT3G23250.2 57.143 70 30 0 58 127 1 70 4.77e-22 93.2
Msa0712590 AT5G17800.1 41.176 119 69 1 1 119 80 197 5.01e-22 95.1
Msa0712590 AT1G73410.2 45.370 108 58 1 14 121 6 112 1.31e-21 91.7
Msa0712590 AT4G32730.5 44.660 103 56 1 14 116 87 188 1.45e-21 96.3
Msa0712590 AT4G32730.4 44.660 103 56 1 14 116 87 188 1.45e-21 96.3
Msa0712590 AT4G32730.3 44.660 103 56 1 14 116 87 188 1.45e-21 96.3
Msa0712590 AT4G32730.2 44.660 103 56 1 14 116 87 188 1.45e-21 96.3
Msa0712590 AT4G32730.1 44.660 103 56 1 14 116 87 188 1.62e-21 96.3
Msa0712590 AT1G18960.1 43.137 102 51 4 17 116 13 109 1.93e-21 93.2
Msa0712590 AT5G14750.4 57.627 59 25 0 58 116 1 59 8.21e-20 84.7
Msa0712590 AT5G14750.2 57.627 59 25 0 58 116 1 59 8.21e-20 84.7
Msa0712590 AT1G66380.2 41.584 101 58 1 8 107 4 104 1.11e-19 83.6
Msa0712590 AT2G25230.1 37.615 109 66 2 17 125 29 135 1.59e-19 86.7
Msa0712590 AT1G71030.2 48.529 68 35 0 51 118 5 72 2.53e-19 84.7
Msa0712590 AT1G71030.1 48.529 68 35 0 51 118 19 86 3.53e-19 84.7
Msa0712590 AT2G02820.1 36.697 109 68 1 17 125 33 140 6.09e-19 87.8
Msa0712590 AT2G02820.3 36.697 109 68 1 17 125 33 140 6.48e-19 86.7
Msa0712590 AT2G02820.2 36.697 109 68 1 17 125 33 140 9.93e-19 87.4
Msa0712590 AT2G37630.1 36.434 129 78 2 14 140 4 130 3.73e-18 84.7
Msa0712590 AT5G39700.1 38.596 114 69 1 9 122 51 163 4.47e-18 81.6
Msa0712590 AT1G14350.2 40.594 101 59 1 17 117 28 127 5.93e-18 84.7
Msa0712590 AT1G14350.1 40.594 101 59 1 17 117 28 127 5.93e-18 84.7
Msa0712590 AT4G00540.2 40.741 108 60 2 12 116 101 207 4.81e-17 82.0
Msa0712590 AT4G00540.1 40.741 108 60 2 12 116 99 205 8.40e-17 81.3
Msa0712590 AT5G40430.1 32.456 114 74 3 12 125 52 162 5.55e-15 74.3
Msa0712590 AT5G59780.1 57.143 49 21 0 70 118 1 49 2.63e-13 67.8
Msa0712590 AT3G46130.2 57.143 49 21 0 70 118 1 49 4.81e-13 67.4
Msa0712590 AT4G25560.2 58.824 51 21 0 71 121 3 53 7.15e-13 67.4
Msa0712590 AT1G14350.3 43.548 62 35 0 56 117 23 84 2.08e-11 65.1
Msa0712590 AT1G14350.4 43.548 62 35 0 56 117 23 84 2.08e-11 65.1
Msa0712590 AT3G28910.2 61.905 42 16 0 77 118 1 42 2.37e-11 63.5
Msa0712590 AT1G74650.3 65.000 40 14 0 77 116 1 40 3.30e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGATGGATAAATTATTTA+AGG 0.204522 5_1:+4452879 Msa0712590:CDS
GTAATTATCTAGTTGATTAA+TGG 0.205543 5_1:-4453616 None:intergenic
AGGACATGTTGATGAAAATA+AGG 0.261958 5_1:-4453673 None:intergenic
GGAAAAGGAGAAAGTGAATT+AGG 0.280326 5_1:-4454164 None:intergenic
ATAGTTGGTGTTGATAAATT+AGG 0.292324 5_1:-4453555 None:intergenic
ATGAGTTTCTCATCTTCTTC+AGG 0.319747 5_1:-4452675 None:intergenic
CTACTCATGGCTATGGTTGC+TGG 0.320661 5_1:+4452709 Msa0712590:CDS
TTCATGGGGTTGTTGGTAAC+AGG 0.322010 5_1:+4452957 Msa0712590:CDS
CAAGATTGCACTTGATCAAT+TGG 0.331436 5_1:-4453957 None:intergenic
TCAAGTGCAATCTTGTAATA+TGG 0.345859 5_1:+4453965 Msa0712590:CDS
AAAAGATGTATTCGATCATT+TGG 0.349983 5_1:+4454484 Msa0712590:three_prime_UTR
AACCTTCCTCTTCTAATATC+AGG 0.359507 5_1:-4452902 None:intergenic
TCATGATGGAATAGTACTTC+TGG 0.366082 5_1:-4453759 None:intergenic
CAAATAACCTTTCCTTCTAC+AGG 0.382480 5_1:-4454440 None:intergenic
GTAGCAAGCTCTTCCTAGTT+AGG 0.390166 5_1:-4454253 None:intergenic
AAAGGTGTGGTAAAAGTTGT+AGG 0.396739 5_1:+4452855 Msa0712590:CDS
AAGTTAATTATAAGCCTTCA+TGG 0.404335 5_1:+4452941 Msa0712590:CDS
TCCACATTATTCTCTATCAA+TGG 0.410595 5_1:-4453921 None:intergenic
AGTACCAAACTCATCACATA+TGG 0.410637 5_1:+4454136 Msa0712590:CDS
GGAGAGTGTTGAAGGACAAA+TGG 0.424251 5_1:+4454094 Msa0712590:CDS
ATAATTAACTTCTCCTCCTC+AGG 0.429297 5_1:-4452929 None:intergenic
ATAAGCCTTCATGGGGTTGT+TGG 0.453533 5_1:+4452950 Msa0712590:CDS
TTCAGCTGGGAGAGTGTTGA+AGG 0.456330 5_1:+4454086 Msa0712590:CDS
AAGAGACACAAATGTTGAAA+AGG 0.464207 5_1:-4454559 None:intergenic
AGGCGATTGAAACCTGTAGA+AGG 0.468057 5_1:+4454428 Msa0712590:three_prime_UTR
ACAAGAAGAGTTGAATGAAT+GGG 0.478733 5_1:+4454031 Msa0712590:CDS
CTTGTGTCAAACATAAATAA+AGG 0.479629 5_1:-4453693 None:intergenic
GACAAGAAGAGTTGAATGAA+TGG 0.483010 5_1:+4454030 Msa0712590:CDS
AAGTGCAGACCAGCTTTCTC+AGG 0.484684 5_1:-4452741 None:intergenic
TTATCTCATAATAGTGAAGA+AGG 0.486146 5_1:-4454185 None:intergenic
GTTCCCATATGTGATGAGTT+TGG 0.488784 5_1:-4454140 None:intergenic
CACATTGCAAGCCACTTGCC+TGG 0.495527 5_1:+4453456 Msa0712590:CDS
TCTGTTGATTGCAGCATGAA+TGG 0.499140 5_1:-4452629 None:intergenic
AGTTAATTATAAGCCTTCAT+GGG 0.499739 5_1:+4452942 Msa0712590:CDS
TACTTCTGGTCTTATTACAT+TGG 0.506573 5_1:-4453745 None:intergenic
ATTTCATTGTCTGTTCTACC+AGG 0.510091 5_1:-4453474 None:intergenic
AAAGCTATTGCAGCTGGATG+AGG 0.510638 5_1:-4453861 None:intergenic
TATATTACTACTCATGGCTA+TGG 0.517189 5_1:+4452702 Msa0712590:CDS
AGAAGGTTAAGAGAGGCCTT+TGG 0.525448 5_1:+4452649 Msa0712590:CDS
GTTGTAAAAGCTATTGCAGC+TGG 0.529157 5_1:-4453867 None:intergenic
CATAATAGTGAAGAAGGAAA+AGG 0.531961 5_1:-4454179 None:intergenic
GTAATAACTAGAGAGAAAGA+TGG 0.543659 5_1:+4452602 Msa0712590:exon
GAGAGTGTTGAAGGACAAAT+GGG 0.544217 5_1:+4454095 Msa0712590:CDS
GTAAAAGTTGTAGGTTGAGA+TGG 0.544435 5_1:+4452864 Msa0712590:CDS
GCTATTGCAGCTGGATGAGG+AGG 0.549719 5_1:-4453858 None:intergenic
TTAATTATATCTACCTAACT+AGG 0.549785 5_1:+4454240 Msa0712590:three_prime_UTR
AGGAGGAGAGTTATTAACAT+TGG 0.550505 5_1:+4453995 Msa0712590:CDS
CATCTTCTTCAGGTGACCAA+AGG 0.550800 5_1:-4452665 None:intergenic
ACATTATTCTCTATCAATGG+TGG 0.555492 5_1:-4453918 None:intergenic
AGTGAAGTTCCTGAGAAAGC+TGG 0.559248 5_1:+4452732 Msa0712590:CDS
ATTAGATATATTACTACTCA+TGG 0.567744 5_1:+4452696 Msa0712590:CDS
TAATAACTAGAGAGAAAGAT+GGG 0.568512 5_1:+4452603 Msa0712590:exon
TTAAACTCACAGAATCATGA+TGG 0.568777 5_1:-4453773 None:intergenic
TGTCTGTTCTACCAGGCAAG+TGG 0.576295 5_1:-4453467 None:intergenic
GTTAATTATAAGCCTTCATG+GGG 0.585238 5_1:+4452943 Msa0712590:CDS
GTACCAAACTCATCACATAT+GGG 0.591485 5_1:+4454137 Msa0712590:CDS
AAGAGGAAGGTTTACACCTG+AGG 0.591737 5_1:+4452913 Msa0712590:CDS
GATGATGTTGATGATGATCA+TGG 0.594936 5_1:-4453821 None:intergenic
TGATGATGATGATCAATAGT+TGG 0.596624 5_1:-4453570 None:intergenic
ATTGAAACCTGTAGAAGGAA+AGG 0.599497 5_1:+4454433 Msa0712590:three_prime_UTR
TTAAGGCCTGATATTAGAAG+AGG 0.608039 5_1:+4452896 Msa0712590:CDS
TGAGTTTAAGTTCTGACACA+TGG 0.610610 5_1:+4453787 Msa0712590:CDS
TCCCAGCTGAAAATAAAGCT+AGG 0.619685 5_1:-4454074 None:intergenic
TGTAATATGGATGACGAAGG+AGG 0.623115 5_1:+4453978 Msa0712590:CDS
AGGAAGGTTTACACCTGAGG+AGG 0.624953 5_1:+4452916 Msa0712590:CDS
TGTTACCAACAACCCCATGA+AGG 0.630892 5_1:-4452955 None:intergenic
ACCATTGATAGAGAATAATG+TGG 0.633578 5_1:+4453920 Msa0712590:CDS
TTCATGCTGCAATCAACAGA+AGG 0.642237 5_1:+4452632 Msa0712590:CDS
GGCCTGATATTAGAAGAGGA+AGG 0.643800 5_1:+4452900 Msa0712590:CDS
TATTTGACTGTACAAAGTGG+TGG 0.654421 5_1:+4454507 Msa0712590:three_prime_UTR
AGTGTTGAAGGACAAATGGG+AGG 0.655479 5_1:+4454098 Msa0712590:CDS
GAATAATGTGGAAAACAACA+TGG 0.684296 5_1:+4453932 Msa0712590:CDS
TCTTGTAATATGGATGACGA+AGG 0.689397 5_1:+4453975 Msa0712590:CDS
GAACTGTAATTGATCAACTG+AGG 0.702739 5_1:-4453594 None:intergenic
AATCAACAGAAGGTTAAGAG+AGG 0.703939 5_1:+4452642 Msa0712590:CDS
TGGTATTTGACTGTACAAAG+TGG 0.732730 5_1:+4454504 Msa0712590:three_prime_UTR
GTATATGTATATGTATAACG+AGG 0.736573 5_1:+4454341 Msa0712590:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTAATTTATTTTCAAA+GGG - chr5_1:4453057-4453076 None:intergenic 10.0%
!!! CTTTTTAATTTATTTTCAAA+GGG - chr5_1:4453057-4453076 None:intergenic 10.0%
!!! TTCTATATATTTTGTTTTTC+AGG + chr5_1:4452827-4452846 Msa0712590:intron 15.0%
!!! TCTATATATTTTGTTTTTCA+GGG + chr5_1:4452828-4452847 Msa0712590:intron 15.0%
!!! GCTTTTTAATTTATTTTCAA+AGG - chr5_1:4453058-4453077 None:intergenic 15.0%
!! ACAATGAAATAAAAAACTAT+TGG + chr5_1:4453487-4453506 Msa0712590:CDS 15.0%
!! GAAAGAGAAAAAAAAAATAA+AGG + chr5_1:4454408-4454427 Msa0712590:three_prime_UTR 15.0%
!!! TTTTTCTTGAATGATAATAA+TGG + chr5_1:4454531-4454550 Msa0712590:three_prime_UTR 15.0%
!!! TTTTCTTGAATGATAATAAT+GGG + chr5_1:4454532-4454551 Msa0712590:three_prime_UTR 15.0%
!!! TTCTATATATTTTGTTTTTC+AGG + chr5_1:4452827-4452846 Msa0712590:intron 15.0%
!!! TCTATATATTTTGTTTTTCA+GGG + chr5_1:4452828-4452847 Msa0712590:intron 15.0%
!!! GCTTTTTAATTTATTTTCAA+AGG - chr5_1:4453058-4453077 None:intergenic 15.0%
!! ACAATGAAATAAAAAACTAT+TGG + chr5_1:4453487-4453506 Msa0712590:CDS 15.0%
!! GAAAGAGAAAAAAAAAATAA+AGG + chr5_1:4454408-4454427 Msa0712590:three_prime_UTR 15.0%
!!! TTTTTCTTGAATGATAATAA+TGG + chr5_1:4454531-4454550 Msa0712590:three_prime_UTR 15.0%
!!! TTTTCTTGAATGATAATAAT+GGG + chr5_1:4454532-4454551 Msa0712590:three_prime_UTR 15.0%
!! ATTAGATATATTACTACTCA+TGG + chr5_1:4452696-4452715 Msa0712590:CDS 20.0%
!! TGAGATGGATAAATTATTTA+AGG + chr5_1:4452879-4452898 Msa0712590:CDS 20.0%
!!! AAAAGCATCATATCAATATT+AGG + chr5_1:4453072-4453091 Msa0712590:intron 20.0%
!! ATCAATATTAGGTAAAGAAA+TGG + chr5_1:4453083-4453102 Msa0712590:intron 20.0%
!! ATTTATTAATGAAGCAATCT+TGG + chr5_1:4453191-4453210 Msa0712590:intron 20.0%
!! AAATGTATGCTTATAAATCA+CGG + chr5_1:4453342-4453361 Msa0712590:intron 20.0%
!! ATATATATATACAATGCAGA+TGG + chr5_1:4453430-4453449 Msa0712590:intron 20.0%
!! TATATATATACAATGCAGAT+GGG + chr5_1:4453431-4453450 Msa0712590:intron 20.0%
!! TAAAAAACTATTGGAATTCA+TGG + chr5_1:4453496-4453515 Msa0712590:CDS 20.0%
!! GTAATTATCTAGTTGATTAA+TGG - chr5_1:4453619-4453638 None:intergenic 20.0%
!! TTAATTATATCTACCTAACT+AGG + chr5_1:4454240-4454259 Msa0712590:three_prime_UTR 20.0%
!! ATTAGATATATTACTACTCA+TGG + chr5_1:4452696-4452715 Msa0712590:CDS 20.0%
!! TGAGATGGATAAATTATTTA+AGG + chr5_1:4452879-4452898 Msa0712590:CDS 20.0%
!!! AAAAGCATCATATCAATATT+AGG + chr5_1:4453072-4453091 Msa0712590:intron 20.0%
!! ATCAATATTAGGTAAAGAAA+TGG + chr5_1:4453083-4453102 Msa0712590:intron 20.0%
!! ATTTATTAATGAAGCAATCT+TGG + chr5_1:4453191-4453210 Msa0712590:intron 20.0%
!! AAATGTATGCTTATAAATCA+CGG + chr5_1:4453342-4453361 Msa0712590:intron 20.0%
!! ATATATATATACAATGCAGA+TGG + chr5_1:4453430-4453449 Msa0712590:intron 20.0%
!! TATATATATACAATGCAGAT+GGG + chr5_1:4453431-4453450 Msa0712590:intron 20.0%
!! TAAAAAACTATTGGAATTCA+TGG + chr5_1:4453496-4453515 Msa0712590:CDS 20.0%
!! GTAATTATCTAGTTGATTAA+TGG - chr5_1:4453619-4453638 None:intergenic 20.0%
!! TTAATTATATCTACCTAACT+AGG + chr5_1:4454240-4454259 Msa0712590:three_prime_UTR 20.0%
! TTTACTAAAGAAAAAGAGAC+AGG + chr5_1:4452560-4452579 Msa0712590:five_prime_UTR 25.0%
! TAATAACTAGAGAGAAAGAT+GGG + chr5_1:4452603-4452622 Msa0712590:exon 25.0%
! AAGTTAATTATAAGCCTTCA+TGG + chr5_1:4452941-4452960 Msa0712590:CDS 25.0%
! AGTTAATTATAAGCCTTCAT+GGG + chr5_1:4452942-4452961 Msa0712590:CDS 25.0%
! AAATCCATATTACACAACAA+GGG - chr5_1:4453012-4453031 None:intergenic 25.0%
! AAAATCCATATTACACAACA+AGG - chr5_1:4453013-4453032 None:intergenic 25.0%
!! TGTTGTGTAATATGGATTTT+TGG + chr5_1:4453013-4453032 Msa0712590:intron 25.0%
!!! ATTTATTTTCAAAGGGTTTC+TGG - chr5_1:4453050-4453069 None:intergenic 25.0%
! TATATTTGTGAATACTAGCT+AGG + chr5_1:4453114-4453133 Msa0712590:intron 25.0%
!! AAACATGACTAGAATTTTGT+TGG - chr5_1:4453315-4453334 None:intergenic 25.0%
!!! ATAGTTGGTGTTGATAAATT+AGG - chr5_1:4453558-4453577 None:intergenic 25.0%
!!! CTTTTGTTGTTACATTTTCT+TGG - chr5_1:4453650-4453669 None:intergenic 25.0%
! CTTGTGTCAAACATAAATAA+AGG - chr5_1:4453696-4453715 None:intergenic 25.0%
! TTATCTCATAATAGTGAAGA+AGG - chr5_1:4454188-4454207 None:intergenic 25.0%
! GTATATGTATATGTATAACG+AGG + chr5_1:4454341-4454360 Msa0712590:three_prime_UTR 25.0%
! AAAAGATGTATTCGATCATT+TGG + chr5_1:4454484-4454503 Msa0712590:three_prime_UTR 25.0%
! TTTACTAAAGAAAAAGAGAC+AGG + chr5_1:4452560-4452579 Msa0712590:five_prime_UTR 25.0%
! TAATAACTAGAGAGAAAGAT+GGG + chr5_1:4452603-4452622 Msa0712590:exon 25.0%
! AAGTTAATTATAAGCCTTCA+TGG + chr5_1:4452941-4452960 Msa0712590:CDS 25.0%
! AGTTAATTATAAGCCTTCAT+GGG + chr5_1:4452942-4452961 Msa0712590:CDS 25.0%
! AAATCCATATTACACAACAA+GGG - chr5_1:4453012-4453031 None:intergenic 25.0%
! AAAATCCATATTACACAACA+AGG - chr5_1:4453013-4453032 None:intergenic 25.0%
!! TGTTGTGTAATATGGATTTT+TGG + chr5_1:4453013-4453032 Msa0712590:intron 25.0%
!!! ATTTATTTTCAAAGGGTTTC+TGG - chr5_1:4453050-4453069 None:intergenic 25.0%
! TATATTTGTGAATACTAGCT+AGG + chr5_1:4453114-4453133 Msa0712590:intron 25.0%
!! AAACATGACTAGAATTTTGT+TGG - chr5_1:4453315-4453334 None:intergenic 25.0%
!!! ATAGTTGGTGTTGATAAATT+AGG - chr5_1:4453558-4453577 None:intergenic 25.0%
!!! CTTTTGTTGTTACATTTTCT+TGG - chr5_1:4453650-4453669 None:intergenic 25.0%
! CTTGTGTCAAACATAAATAA+AGG - chr5_1:4453696-4453715 None:intergenic 25.0%
! TTATCTCATAATAGTGAAGA+AGG - chr5_1:4454188-4454207 None:intergenic 25.0%
! GTATATGTATATGTATAACG+AGG + chr5_1:4454341-4454360 Msa0712590:three_prime_UTR 25.0%
! AAAAGATGTATTCGATCATT+TGG + chr5_1:4454484-4454503 Msa0712590:three_prime_UTR 25.0%
GTAATAACTAGAGAGAAAGA+TGG + chr5_1:4452602-4452621 Msa0712590:exon 30.0%
TATATTACTACTCATGGCTA+TGG + chr5_1:4452702-4452721 Msa0712590:CDS 30.0%
GTTAATTATAAGCCTTCATG+GGG + chr5_1:4452943-4452962 Msa0712590:CDS 30.0%
! AATCTTGGTAACTATAGCTT+TGG + chr5_1:4453206-4453225 Msa0712590:intron 30.0%
! ATCTTGGTAACTATAGCTTT+GGG + chr5_1:4453207-4453226 Msa0712590:intron 30.0%
TGCTAAACAAACACTGAAAA+CGG - chr5_1:4453275-4453294 None:intergenic 30.0%
! TGATGATGATGATCAATAGT+TGG - chr5_1:4453573-4453592 None:intergenic 30.0%
! TGTTGTTACATTTTCTTGGT+TGG - chr5_1:4453646-4453665 None:intergenic 30.0%
! AGGACATGTTGATGAAAATA+AGG - chr5_1:4453676-4453695 None:intergenic 30.0%
!! TACTTCTGGTCTTATTACAT+TGG - chr5_1:4453748-4453767 None:intergenic 30.0%
TTAAACTCACAGAATCATGA+TGG - chr5_1:4453776-4453795 None:intergenic 30.0%
ACATTATTCTCTATCAATGG+TGG - chr5_1:4453921-4453940 None:intergenic 30.0%
ACCATTGATAGAGAATAATG+TGG + chr5_1:4453920-4453939 Msa0712590:CDS 30.0%
TCCACATTATTCTCTATCAA+TGG - chr5_1:4453924-4453943 None:intergenic 30.0%
GAATAATGTGGAAAACAACA+TGG + chr5_1:4453932-4453951 Msa0712590:CDS 30.0%
TCAAGTGCAATCTTGTAATA+TGG + chr5_1:4453965-4453984 Msa0712590:CDS 30.0%
ACAAGAAGAGTTGAATGAAT+GGG + chr5_1:4454031-4454050 Msa0712590:CDS 30.0%
CATAATAGTGAAGAAGGAAA+AGG - chr5_1:4454182-4454201 None:intergenic 30.0%
ATCAGCAATCAAAAAAAGTG+TGG - chr5_1:4454295-4454314 None:intergenic 30.0%
!!! CACTTTTTTTGATTGCTGAT+TGG + chr5_1:4454295-4454314 Msa0712590:three_prime_UTR 30.0%
!!! TTTTGTTGAGTGTTTTGACA+AGG + chr5_1:4454373-4454392 Msa0712590:three_prime_UTR 30.0%
GTAATAACTAGAGAGAAAGA+TGG + chr5_1:4452602-4452621 Msa0712590:exon 30.0%
TATATTACTACTCATGGCTA+TGG + chr5_1:4452702-4452721 Msa0712590:CDS 30.0%
GTTAATTATAAGCCTTCATG+GGG + chr5_1:4452943-4452962 Msa0712590:CDS 30.0%
! AATCTTGGTAACTATAGCTT+TGG + chr5_1:4453206-4453225 Msa0712590:intron 30.0%
! ATCTTGGTAACTATAGCTTT+GGG + chr5_1:4453207-4453226 Msa0712590:intron 30.0%
TGCTAAACAAACACTGAAAA+CGG - chr5_1:4453275-4453294 None:intergenic 30.0%
! TGATGATGATGATCAATAGT+TGG - chr5_1:4453573-4453592 None:intergenic 30.0%
! TGTTGTTACATTTTCTTGGT+TGG - chr5_1:4453646-4453665 None:intergenic 30.0%
! AGGACATGTTGATGAAAATA+AGG - chr5_1:4453676-4453695 None:intergenic 30.0%
!! TACTTCTGGTCTTATTACAT+TGG - chr5_1:4453748-4453767 None:intergenic 30.0%
TTAAACTCACAGAATCATGA+TGG - chr5_1:4453776-4453795 None:intergenic 30.0%
ACATTATTCTCTATCAATGG+TGG - chr5_1:4453921-4453940 None:intergenic 30.0%
ACCATTGATAGAGAATAATG+TGG + chr5_1:4453920-4453939 Msa0712590:CDS 30.0%
TCCACATTATTCTCTATCAA+TGG - chr5_1:4453924-4453943 None:intergenic 30.0%
GAATAATGTGGAAAACAACA+TGG + chr5_1:4453932-4453951 Msa0712590:CDS 30.0%
TCAAGTGCAATCTTGTAATA+TGG + chr5_1:4453965-4453984 Msa0712590:CDS 30.0%
ACAAGAAGAGTTGAATGAAT+GGG + chr5_1:4454031-4454050 Msa0712590:CDS 30.0%
CATAATAGTGAAGAAGGAAA+AGG - chr5_1:4454182-4454201 None:intergenic 30.0%
ATCAGCAATCAAAAAAAGTG+TGG - chr5_1:4454295-4454314 None:intergenic 30.0%
!!! CACTTTTTTTGATTGCTGAT+TGG + chr5_1:4454295-4454314 Msa0712590:three_prime_UTR 30.0%
!!! TTTTGTTGAGTGTTTTGACA+AGG + chr5_1:4454373-4454392 Msa0712590:three_prime_UTR 30.0%
AATCAACAGAAGGTTAAGAG+AGG + chr5_1:4452642-4452661 Msa0712590:CDS 35.0%
ATGAGTTTCTCATCTTCTTC+AGG - chr5_1:4452678-4452697 None:intergenic 35.0%
!!! TTTGTTTTTCAGGGCTTCAA+AGG + chr5_1:4452837-4452856 Msa0712590:intron 35.0%
! AAAGGTGTGGTAAAAGTTGT+AGG + chr5_1:4452855-4452874 Msa0712590:CDS 35.0%
! GTAAAAGTTGTAGGTTGAGA+TGG + chr5_1:4452864-4452883 Msa0712590:CDS 35.0%
TTAAGGCCTGATATTAGAAG+AGG + chr5_1:4452896-4452915 Msa0712590:CDS 35.0%
AACCTTCCTCTTCTAATATC+AGG - chr5_1:4452905-4452924 None:intergenic 35.0%
ATAATTAACTTCTCCTCCTC+AGG - chr5_1:4452932-4452951 None:intergenic 35.0%
! CATTCCCTTGTTGTGTAATA+TGG + chr5_1:4453005-4453024 Msa0712590:intron 35.0%
TTGAGCTATATCATGTAGCT+AGG - chr5_1:4453140-4453159 None:intergenic 35.0%
! TCTTGGTAACTATAGCTTTG+GGG + chr5_1:4453208-4453227 Msa0712590:intron 35.0%
ATTTCATTGTCTGTTCTACC+AGG - chr5_1:4453477-4453496 None:intergenic 35.0%
GAACTGTAATTGATCAACTG+AGG - chr5_1:4453597-4453616 None:intergenic 35.0%
! TCATGATGGAATAGTACTTC+TGG - chr5_1:4453762-4453781 None:intergenic 35.0%
! TGAGTTTAAGTTCTGACACA+TGG + chr5_1:4453787-4453806 Msa0712590:CDS 35.0%
!! GATGATGTTGATGATGATCA+TGG - chr5_1:4453824-4453843 None:intergenic 35.0%
CAAGATTGCACTTGATCAAT+TGG - chr5_1:4453960-4453979 None:intergenic 35.0%
TCTTGTAATATGGATGACGA+AGG + chr5_1:4453975-4453994 Msa0712590:CDS 35.0%
AGGAGGAGAGTTATTAACAT+TGG + chr5_1:4453995-4454014 Msa0712590:CDS 35.0%
GACAAGAAGAGTTGAATGAA+TGG + chr5_1:4454030-4454049 Msa0712590:CDS 35.0%
!!! TCCTAGCTTTATTTTCAGCT+GGG + chr5_1:4454073-4454092 Msa0712590:CDS 35.0%
AGTACCAAACTCATCACATA+TGG + chr5_1:4454136-4454155 Msa0712590:CDS 35.0%
GTACCAAACTCATCACATAT+GGG + chr5_1:4454137-4454156 Msa0712590:CDS 35.0%
GGAAAAGGAGAAAGTGAATT+AGG - chr5_1:4454167-4454186 None:intergenic 35.0%
ATTGAAACCTGTAGAAGGAA+AGG + chr5_1:4454433-4454452 Msa0712590:three_prime_UTR 35.0%
CAAATAACCTTTCCTTCTAC+AGG - chr5_1:4454443-4454462 None:intergenic 35.0%
TGGTATTTGACTGTACAAAG+TGG + chr5_1:4454504-4454523 Msa0712590:three_prime_UTR 35.0%
TATTTGACTGTACAAAGTGG+TGG + chr5_1:4454507-4454526 Msa0712590:three_prime_UTR 35.0%
AATCAACAGAAGGTTAAGAG+AGG + chr5_1:4452642-4452661 Msa0712590:CDS 35.0%
ATGAGTTTCTCATCTTCTTC+AGG - chr5_1:4452678-4452697 None:intergenic 35.0%
!!! TTTGTTTTTCAGGGCTTCAA+AGG + chr5_1:4452837-4452856 Msa0712590:intron 35.0%
! AAAGGTGTGGTAAAAGTTGT+AGG + chr5_1:4452855-4452874 Msa0712590:CDS 35.0%
! GTAAAAGTTGTAGGTTGAGA+TGG + chr5_1:4452864-4452883 Msa0712590:CDS 35.0%
TTAAGGCCTGATATTAGAAG+AGG + chr5_1:4452896-4452915 Msa0712590:CDS 35.0%
AACCTTCCTCTTCTAATATC+AGG - chr5_1:4452905-4452924 None:intergenic 35.0%
ATAATTAACTTCTCCTCCTC+AGG - chr5_1:4452932-4452951 None:intergenic 35.0%
! CATTCCCTTGTTGTGTAATA+TGG + chr5_1:4453005-4453024 Msa0712590:intron 35.0%
TTGAGCTATATCATGTAGCT+AGG - chr5_1:4453140-4453159 None:intergenic 35.0%
! TCTTGGTAACTATAGCTTTG+GGG + chr5_1:4453208-4453227 Msa0712590:intron 35.0%
ATTTCATTGTCTGTTCTACC+AGG - chr5_1:4453477-4453496 None:intergenic 35.0%
GAACTGTAATTGATCAACTG+AGG - chr5_1:4453597-4453616 None:intergenic 35.0%
! TCATGATGGAATAGTACTTC+TGG - chr5_1:4453762-4453781 None:intergenic 35.0%
! TGAGTTTAAGTTCTGACACA+TGG + chr5_1:4453787-4453806 Msa0712590:CDS 35.0%
!! GATGATGTTGATGATGATCA+TGG - chr5_1:4453824-4453843 None:intergenic 35.0%
CAAGATTGCACTTGATCAAT+TGG - chr5_1:4453960-4453979 None:intergenic 35.0%
TCTTGTAATATGGATGACGA+AGG + chr5_1:4453975-4453994 Msa0712590:CDS 35.0%
AGGAGGAGAGTTATTAACAT+TGG + chr5_1:4453995-4454014 Msa0712590:CDS 35.0%
GACAAGAAGAGTTGAATGAA+TGG + chr5_1:4454030-4454049 Msa0712590:CDS 35.0%
!!! TCCTAGCTTTATTTTCAGCT+GGG + chr5_1:4454073-4454092 Msa0712590:CDS 35.0%
AGTACCAAACTCATCACATA+TGG + chr5_1:4454136-4454155 Msa0712590:CDS 35.0%
GTACCAAACTCATCACATAT+GGG + chr5_1:4454137-4454156 Msa0712590:CDS 35.0%
GGAAAAGGAGAAAGTGAATT+AGG - chr5_1:4454167-4454186 None:intergenic 35.0%
ATTGAAACCTGTAGAAGGAA+AGG + chr5_1:4454433-4454452 Msa0712590:three_prime_UTR 35.0%
CAAATAACCTTTCCTTCTAC+AGG - chr5_1:4454443-4454462 None:intergenic 35.0%
TGGTATTTGACTGTACAAAG+TGG + chr5_1:4454504-4454523 Msa0712590:three_prime_UTR 35.0%
TATTTGACTGTACAAAGTGG+TGG + chr5_1:4454507-4454526 Msa0712590:three_prime_UTR 35.0%
! TCTGTTGATTGCAGCATGAA+TGG - chr5_1:4452632-4452651 None:intergenic 40.0%
TTCATGCTGCAATCAACAGA+AGG + chr5_1:4452632-4452651 Msa0712590:CDS 40.0%
!! TAGCTTTGGGGATGTTAAGA+TGG + chr5_1:4453220-4453239 Msa0712590:intron 40.0%
GTTGTAAAAGCTATTGCAGC+TGG - chr5_1:4453870-4453889 None:intergenic 40.0%
TGTAATATGGATGACGAAGG+AGG + chr5_1:4453978-4453997 Msa0712590:CDS 40.0%
!!! GTCCTAGCTTTATTTTCAGC+TGG + chr5_1:4454072-4454091 Msa0712590:CDS 40.0%
TCCCAGCTGAAAATAAAGCT+AGG - chr5_1:4454077-4454096 None:intergenic 40.0%
!! GAGAGTGTTGAAGGACAAAT+GGG + chr5_1:4454095-4454114 Msa0712590:CDS 40.0%
GTTCCCATATGTGATGAGTT+TGG - chr5_1:4454143-4454162 None:intergenic 40.0%
!!! TGAGTGTTTTGACAAGGAAG+AGG + chr5_1:4454379-4454398 Msa0712590:three_prime_UTR 40.0%
! TCTGTTGATTGCAGCATGAA+TGG - chr5_1:4452632-4452651 None:intergenic 40.0%
TTCATGCTGCAATCAACAGA+AGG + chr5_1:4452632-4452651 Msa0712590:CDS 40.0%
!! TAGCTTTGGGGATGTTAAGA+TGG + chr5_1:4453220-4453239 Msa0712590:intron 40.0%
GTTGTAAAAGCTATTGCAGC+TGG - chr5_1:4453870-4453889 None:intergenic 40.0%
TGTAATATGGATGACGAAGG+AGG + chr5_1:4453978-4453997 Msa0712590:CDS 40.0%
!!! GTCCTAGCTTTATTTTCAGC+TGG + chr5_1:4454072-4454091 Msa0712590:CDS 40.0%
TCCCAGCTGAAAATAAAGCT+AGG - chr5_1:4454077-4454096 None:intergenic 40.0%
!! GAGAGTGTTGAAGGACAAAT+GGG + chr5_1:4454095-4454114 Msa0712590:CDS 40.0%
GTTCCCATATGTGATGAGTT+TGG - chr5_1:4454143-4454162 None:intergenic 40.0%
!!! TGAGTGTTTTGACAAGGAAG+AGG + chr5_1:4454379-4454398 Msa0712590:three_prime_UTR 40.0%
AGAAGGTTAAGAGAGGCCTT+TGG + chr5_1:4452649-4452668 Msa0712590:CDS 45.0%
CATCTTCTTCAGGTGACCAA+AGG - chr5_1:4452668-4452687 None:intergenic 45.0%
AGTGAAGTTCCTGAGAAAGC+TGG + chr5_1:4452732-4452751 Msa0712590:CDS 45.0%
!! TTTTCAGGGCTTCAAAGGTG+TGG + chr5_1:4452842-4452861 Msa0712590:intron 45.0%
GGCCTGATATTAGAAGAGGA+AGG + chr5_1:4452900-4452919 Msa0712590:CDS 45.0%
AAGAGGAAGGTTTACACCTG+AGG + chr5_1:4452913-4452932 Msa0712590:CDS 45.0%
ATAAGCCTTCATGGGGTTGT+TGG + chr5_1:4452950-4452969 Msa0712590:CDS 45.0%
TGTTACCAACAACCCCATGA+AGG - chr5_1:4452958-4452977 None:intergenic 45.0%
!! TTCATGGGGTTGTTGGTAAC+AGG + chr5_1:4452957-4452976 Msa0712590:CDS 45.0%
AAAGCTATTGCAGCTGGATG+AGG - chr5_1:4453864-4453883 None:intergenic 45.0%
!! GGAGAGTGTTGAAGGACAAA+TGG + chr5_1:4454094-4454113 Msa0712590:CDS 45.0%
! AGTGTTGAAGGACAAATGGG+AGG + chr5_1:4454098-4454117 Msa0712590:CDS 45.0%
GTAGCAAGCTCTTCCTAGTT+AGG - chr5_1:4454256-4454275 None:intergenic 45.0%
AGGCGATTGAAACCTGTAGA+AGG + chr5_1:4454428-4454447 Msa0712590:three_prime_UTR 45.0%
AGAAGGTTAAGAGAGGCCTT+TGG + chr5_1:4452649-4452668 Msa0712590:CDS 45.0%
CATCTTCTTCAGGTGACCAA+AGG - chr5_1:4452668-4452687 None:intergenic 45.0%
AGTGAAGTTCCTGAGAAAGC+TGG + chr5_1:4452732-4452751 Msa0712590:CDS 45.0%
!! TTTTCAGGGCTTCAAAGGTG+TGG + chr5_1:4452842-4452861 Msa0712590:intron 45.0%
GGCCTGATATTAGAAGAGGA+AGG + chr5_1:4452900-4452919 Msa0712590:CDS 45.0%
AAGAGGAAGGTTTACACCTG+AGG + chr5_1:4452913-4452932 Msa0712590:CDS 45.0%
ATAAGCCTTCATGGGGTTGT+TGG + chr5_1:4452950-4452969 Msa0712590:CDS 45.0%
TGTTACCAACAACCCCATGA+AGG - chr5_1:4452958-4452977 None:intergenic 45.0%
!! TTCATGGGGTTGTTGGTAAC+AGG + chr5_1:4452957-4452976 Msa0712590:CDS 45.0%
AAAGCTATTGCAGCTGGATG+AGG - chr5_1:4453864-4453883 None:intergenic 45.0%
!! GGAGAGTGTTGAAGGACAAA+TGG + chr5_1:4454094-4454113 Msa0712590:CDS 45.0%
! AGTGTTGAAGGACAAATGGG+AGG + chr5_1:4454098-4454117 Msa0712590:CDS 45.0%
GTAGCAAGCTCTTCCTAGTT+AGG - chr5_1:4454256-4454275 None:intergenic 45.0%
AGGCGATTGAAACCTGTAGA+AGG + chr5_1:4454428-4454447 Msa0712590:three_prime_UTR 45.0%
CTACTCATGGCTATGGTTGC+TGG + chr5_1:4452709-4452728 Msa0712590:CDS 50.0%
AAGTGCAGACCAGCTTTCTC+AGG - chr5_1:4452744-4452763 None:intergenic 50.0%
AGGAAGGTTTACACCTGAGG+AGG + chr5_1:4452916-4452935 Msa0712590:CDS 50.0%
TGTCTGTTCTACCAGGCAAG+TGG - chr5_1:4453470-4453489 None:intergenic 50.0%
!! TTCAGCTGGGAGAGTGTTGA+AGG + chr5_1:4454086-4454105 Msa0712590:CDS 50.0%
CTACTCATGGCTATGGTTGC+TGG + chr5_1:4452709-4452728 Msa0712590:CDS 50.0%
AAGTGCAGACCAGCTTTCTC+AGG - chr5_1:4452744-4452763 None:intergenic 50.0%
AGGAAGGTTTACACCTGAGG+AGG + chr5_1:4452916-4452935 Msa0712590:CDS 50.0%
TGTCTGTTCTACCAGGCAAG+TGG - chr5_1:4453470-4453489 None:intergenic 50.0%
!! TTCAGCTGGGAGAGTGTTGA+AGG + chr5_1:4454086-4454105 Msa0712590:CDS 50.0%
CACATTGCAAGCCACTTGCC+TGG + chr5_1:4453456-4453475 Msa0712590:CDS 55.0%
GCTATTGCAGCTGGATGAGG+AGG - chr5_1:4453861-4453880 None:intergenic 55.0%
CACATTGCAAGCCACTTGCC+TGG + chr5_1:4453456-4453475 Msa0712590:CDS 55.0%
GCTATTGCAGCTGGATGAGG+AGG - chr5_1:4453861-4453880 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 4452529 4454569 4452529 ID=Msa0712590;Name=Msa0712590
chr5_1 mRNA 4452529 4454569 4452529 ID=Msa0712590-mRNA-1;Parent=Msa0712590;Name=Msa0712590-mRNA-1;_AED=0.04;_eAED=0.04;_QI=92|1|1|1|1|1|3|367|338
chr5_1 exon 4452529 4452753 4452529 ID=Msa0712590-mRNA-1:exon:1778;Parent=Msa0712590-mRNA-1
chr5_1 exon 4452849 4452978 4452849 ID=Msa0712590-mRNA-1:exon:1779;Parent=Msa0712590-mRNA-1
chr5_1 exon 4453449 4454569 4453449 ID=Msa0712590-mRNA-1:exon:1780;Parent=Msa0712590-mRNA-1
chr5_1 five_prime_UTR 4452529 4452620 4452529 ID=Msa0712590-mRNA-1:five_prime_utr;Parent=Msa0712590-mRNA-1
chr5_1 CDS 4452621 4452753 4452621 ID=Msa0712590-mRNA-1:cds;Parent=Msa0712590-mRNA-1
chr5_1 CDS 4452849 4452978 4452849 ID=Msa0712590-mRNA-1:cds;Parent=Msa0712590-mRNA-1
chr5_1 CDS 4453449 4454202 4453449 ID=Msa0712590-mRNA-1:cds;Parent=Msa0712590-mRNA-1
chr5_1 three_prime_UTR 4454203 4454569 4454203 ID=Msa0712590-mRNA-1:three_prime_utr;Parent=Msa0712590-mRNA-1
Gene Sequence

>Msa0712590

ATGGGTCACCATTCATGCTGCAATCAACAGAAGGTTAAGAGAGGCCTTTGGTCACCTGAAGAAGATGAGAAACTCATTAGATATATTACTACTCATGGCTATGGTTGCTGGAGTGAAGTTCCTGAGAAAGCTGGGCTTCAAAGGTGTGGTAAAAGTTGTAGGTTGAGATGGATAAATTATTTAAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAGGAGGAGAAGTTAATTATAAGCCTTCATGGGGTTGTTGGTAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGTAGAACAGACAATGAAATAAAAAACTATTGGAATTCATGGATCAAAAAGAAAATTAGAAAGTCTTCTTCTTCTGCTCCTAATTTATCAACACCAACTATTGATCATCATCATCATCCTCAGTTGATCAATTACAGTTCCATTAATCAACTAGATAATTACTTTACCAACCAAGAAAATGTAACAACAAAAGAAACCTTATTTTCATCAACATGTCCTTTATTTATGTTTGACACAAGTTCACTACATGAAACAACAGCAACAGACACCAATGTAATAAGACCAGAAGTACTATTCCATCATGATTCTGTGAGTTTAAGTTCTGACACATGGAACTTGAATCACCATGATCATCATCAACATCATCAAGTTCAGACACTTCCTCCTCATCCAGCTGCAATAGCTTTTACAACAATTCATGATACTAGTAATTATAATCTTCCACCATTGATAGAGAATAATGTGGAAAACAACATGGTGCCAATTGATCAAGTGCAATCTTGTAATATGGATGACGAAGGAGGAGAGTTATTAACATTGGAGTCATTGCAAAGACAAGAAGAGTTGAATGAATGGGTAGAAACTCAACAACAGTGTCCTAGCTTTATTTTCAGCTGGGAGAGTGTTGAAGGACAAATGGGAGGTGAAGAACAAGTACTAGTACCAAACTCATCACATATGGGAACACCTAATTCACTTTCTCCTTTTCCTTCTTCACTATTATGA
Protein sequence

>Msa0712590

MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKSSSSAPNLSTPTIDHHHHPQLINYSSINQLDNYFTNQENVTTKETLFSSTCPLFMFDTSSLHETTATDTNVIRPEVLFHHDSVSLSSDTWNLNHHDHHQHHQVQTLPPHPAAIAFTTIHDTSNYNLPPLIENNVENNMVPIDQVQSCNMDDEGGELLTLESLQRQEELNEWVETQQQCPSFIFSWESVEGQMGGEEQVLVPNSSHMGTPNSLSPFPSSLL*