AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462600 MtrunA17_Chr3g0122231 94.737 361 16 1 1 361 1 358 0.0 666
Msa1462600 MtrunA17_Chr8g0377611 71.720 343 87 3 22 361 29 364 0.0 524
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462600 AT1G10830.1 76.897 290 67 0 72 361 78 367 1.87e-177 497
Msa1462600 AT1G10830.2 73.936 188 49 0 72 259 78 265 7.16e-103 305
Msa1462600 AT1G10830.3 74.545 110 28 0 72 181 78 187 1.06e-52 174

Find 96 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTTCTAAAAGATTAA+AGG 0.126652 tig0042429:+10820 None:intergenic
GATTTATTTCGCCGCAATTT+TGG 0.154342 tig0042429:-11881 Msa1462600:CDS
TTAATTTCACATCATCTATT+TGG 0.187467 tig0042429:-10274 Msa1462600:CDS
GCAAGACAGATCCTTGTTTC+TGG 0.192408 tig0042429:+9811 None:intergenic
CATTACCCATTCTTCAATAA+AGG 0.235780 tig0042429:-11974 Msa1462600:CDS
AAACCGCAAATATGAGAATT+AGG 0.277606 tig0042429:+11219 None:intergenic
GGTGTCTTGCTCATACAATT+TGG 0.284942 tig0042429:-10333 Msa1462600:CDS
TCTCTCACAGGTTCAACTTC+AGG 0.333892 tig0042429:-11999 Msa1462600:CDS
GAGCGTTGAGAAGCAGGTTT+TGG 0.335966 tig0042429:+12060 None:intergenic
AATGCAGTAATTACTAAGTA+TGG 0.338106 tig0042429:+10103 None:intergenic
GTGGCTGTTGCAGCTTCAAT+TGG 0.349115 tig0042429:-10298 Msa1462600:CDS
AGATGGTTGGTCAGGTAATC+TGG 0.354286 tig0042429:-10354 Msa1462600:CDS
TGCTGTTCAGATGGTTGGTC+AGG 0.355164 tig0042429:-10362 Msa1462600:intron
CACATCATCTATTTGGTGCT+TGG 0.366412 tig0042429:-10267 Msa1462600:CDS
AAAATACATCTATATGAAAC+TGG 0.374022 tig0042429:-10782 Msa1462600:CDS
CGGAACAGAAAATAACTTCA+TGG 0.384156 tig0042429:-11903 Msa1462600:CDS
TTTATTAATCACAGATATGA+TGG 0.389024 tig0042429:-10935 Msa1462600:CDS
CCATCAAGGATTGCTGCAAA+AGG 0.390457 tig0042429:+10172 None:intergenic
ATTGATAACTCAACTGGCTT+TGG 0.394276 tig0042429:-11826 Msa1462600:CDS
CAAGACAGATCCTTGTTTCT+GGG 0.398701 tig0042429:+9812 None:intergenic
GATCCTAATTCTCATATTTG+CGG 0.403823 tig0042429:-11222 Msa1462600:CDS
GAAAATAAAATAGAAATGAT+TGG 0.405818 tig0042429:-9900 Msa1462600:three_prime_UTR
TATGAGGAGCGTTGAGAAGC+AGG 0.409631 tig0042429:+12054 None:intergenic
CTTGCTCATACAATTTGGAT+TGG 0.409860 tig0042429:-10328 Msa1462600:CDS
TCTAAAAGATTAAAGGTTGA+AGG 0.413154 tig0042429:+10827 None:intergenic
TCATGTAAAATCTAATGTAT+AGG 0.422428 tig0042429:-9991 Msa1462600:three_prime_UTR
TCTTCATTCTAAATGTGGTA+TGG 0.429366 tig0042429:-11849 Msa1462600:CDS
AACAAAGATGGGTGATGGGT+TGG 0.432814 tig0042429:+12114 None:intergenic
TTGCTCATACAATTTGGATT+GGG 0.435090 tig0042429:-10327 Msa1462600:CDS
CTTGCATAAACCGTGTTCTA+TGG 0.437728 tig0042429:-9793 Msa1462600:three_prime_UTR
GGAATATGAAATGGAATAAG+AGG 0.440648 tig0042429:+12086 None:intergenic
AAACTAGCAGCCTGCATAAG+AGG 0.442374 tig0042429:+10055 None:intergenic
CTTTGCACACCCTCTTATGC+AGG 0.452520 tig0042429:-10065 Msa1462600:CDS
GATTAAAGGTTGAAGGATAT+AGG 0.458002 tig0042429:+10834 None:intergenic
ACAAGTGTACAGTCATTGTC+AGG 0.458144 tig0042429:+9860 None:intergenic
TAAGAGGGAGAGAACAAAGA+TGG 0.458636 tig0042429:+12102 None:intergenic
ATGGCTAGCCTACGGAATAC+TGG 0.465850 tig0042429:-11185 Msa1462600:CDS
GTATGGATTGATAACTCAAC+TGG 0.468553 tig0042429:-11832 Msa1462600:CDS
CATCTATTTGGTGCTTGGAA+TGG 0.469784 tig0042429:-10262 Msa1462600:CDS
GATTAATACCTGTGGATGCC+TGG 0.472549 tig0042429:+10745 None:intergenic
AATACTGGTGAGAAAATCAT+TGG 0.476132 tig0042429:-11170 Msa1462600:CDS
GATGAATCCCCGGAGTACTC+TGG 0.479621 tig0042429:+10894 None:intergenic
TGGCAGCTCCAGAGTACTCC+GGG 0.483611 tig0042429:-10902 Msa1462600:CDS
CAACAATACCTCGTGAGAAT+CGG 0.485418 tig0042429:+11771 None:intergenic
ATTTGGAGATGAGAAGTATG+AGG 0.486179 tig0042429:+12038 None:intergenic
AAGAGGGAGAGAACAAAGAT+GGG 0.490152 tig0042429:+12103 None:intergenic
TGTAGTGTGCATCAATAGAC+AGG 0.491933 tig0042429:-9945 Msa1462600:three_prime_UTR
GCATCAATAGACAGGGTCAC+AGG 0.495328 tig0042429:-9937 Msa1462600:three_prime_UTR
CTGCTAGTTTCAACCTCCAT+TGG 0.497102 tig0042429:-10042 Msa1462600:CDS
GAGAGAACAAAGATGGGTGA+TGG 0.501885 tig0042429:+12109 None:intergenic
TTGGTGCTTGGAATGGAGAT+AGG 0.502563 tig0042429:-10255 Msa1462600:CDS
AATCCGCAGGTAATCTTTGA+CGG 0.502619 tig0042429:+10149 None:intergenic
AACCTGTGAGAGAGAGATAG+TGG 0.513143 tig0042429:+12009 None:intergenic
GGTTCTCTTCATTCTAAATG+TGG 0.519664 tig0042429:-11854 Msa1462600:CDS
CATCAAGGATTGCTGCAAAA+GGG 0.524831 tig0042429:+10173 None:intergenic
ATTTCCTTTCCACCTACCAA+TGG 0.531822 tig0042429:+10026 None:intergenic
ACAATAGTAGTGACAGCTAA+AGG 0.535492 tig0042429:+11107 None:intergenic
ACCTCCATTGGTAGGTGGAA+AGG 0.536645 tig0042429:-10030 Msa1462600:exon
ATTACCTGCGGATTTCTACA+AGG 0.539323 tig0042429:-10140 Msa1462600:CDS
TAGTTTCAACCTCCATTGGT+AGG 0.542093 tig0042429:-10038 Msa1462600:exon
TCTTGGTGACTAGAAGTTGT+GGG 0.542096 tig0042429:-12233 Msa1462600:five_prime_UTR
CACAGAAGTTGATGAATCCC+CGG 0.546615 tig0042429:+10884 None:intergenic
GTAATCTTTGACGGCCATCA+AGG 0.548368 tig0042429:+10158 None:intergenic
AGAGAACAAAGATGGGTGAT+GGG 0.548569 tig0042429:+12110 None:intergenic
AACTCCTTGTAGAAATCCGC+AGG 0.550585 tig0042429:+10136 None:intergenic
AAGAATAACCAGGCATCCAC+AGG 0.553400 tig0042429:-10753 Msa1462600:intron
CTCTTGGTGACTAGAAGTTG+TGG 0.553988 tig0042429:-12234 Msa1462600:five_prime_UTR
CGGGGATTCATCAACTTCTG+TGG 0.555871 tig0042429:-10883 Msa1462600:CDS
TCCTTTCCACCTACCAATGG+AGG 0.559081 tig0042429:+10029 None:intergenic
GATATGATGGAATTCAACTC+TGG 0.560955 tig0042429:-10922 Msa1462600:CDS
CTGGCAGCTCCAGAGTACTC+CGG 0.564920 tig0042429:-10903 Msa1462600:CDS
GAATATGAAATGGAATAAGA+GGG 0.569325 tig0042429:+12087 None:intergenic
TTTAGTTTAGTTGAAGGACT+CGG 0.570373 tig0042429:+12174 None:intergenic
AACCACTATCTCTCTCTCAC+AGG 0.578529 tig0042429:-12011 Msa1462600:CDS
AACTAGCAGCCTGCATAAGA+GGG 0.580769 tig0042429:+10056 None:intergenic
GTAATTACTGCATTAACACT+AGG 0.589570 tig0042429:-10094 Msa1462600:CDS
CACAACTTCTAGTCACCAAG+AGG 0.595441 tig0042429:+12235 None:intergenic
CATCAATAGACAGGGTCACA+GGG 0.597757 tig0042429:-9936 Msa1462600:three_prime_UTR
AGAAGCAGAGAGTATAAGAG+AGG 0.598033 tig0042429:+12143 None:intergenic
CTGGCATCATAAGAATAACC+AGG 0.600338 tig0042429:-10763 Msa1462600:CDS
TTCCGTTAAACTAAAAGCTG+CGG 0.611809 tig0042429:+11921 None:intergenic
TTTCAACCTCCATTGGTAGG+TGG 0.613440 tig0042429:-10035 Msa1462600:exon
ACAGTGGCATGGCTAGCCTA+CGG 0.614954 tig0042429:-11193 Msa1462600:CDS
AATTGTGTGACCCAGAAACA+AGG 0.617380 tig0042429:-9822 Msa1462600:three_prime_UTR
AGGCGATTAGCTCAAAGACA+TGG 0.626170 tig0042429:-10235 Msa1462600:CDS
GAGAACCACACCCAAAATTG+CGG 0.633481 tig0042429:+11870 None:intergenic
AGGGCTCTCCGATTCTCACG+AGG 0.645915 tig0042429:-11779 Msa1462600:intron
TGGTGACTAGAAGTTGTGGG+TGG 0.660340 tig0042429:-12230 Msa1462600:five_prime_UTR
TGGCCGTCAAAGATTACCTG+CGG 0.666868 tig0042429:-10152 Msa1462600:CDS
ACAACTTCTAGTCACCAAGA+GGG 0.683299 tig0042429:+12236 None:intergenic
AATTTGGATTGGGAATTCTG+TGG 0.685087 tig0042429:-10317 Msa1462600:CDS
TTGATGCACACTACAGCACG+TGG 0.701313 tig0042429:+9953 None:intergenic
TTAATGTGCACCATAGAACA+CGG 0.707425 tig0042429:+9783 None:intergenic
GTAGTGTGCATCAATAGACA+GGG 0.716909 tig0042429:-9944 Msa1462600:three_prime_UTR
GGCAGCTCCAGAGTACTCCG+GGG 0.727870 tig0042429:-10901 Msa1462600:CDS
GTAGGCTAGCCATGCCACTG+TGG 0.748430 tig0042429:+11195 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACATTTCAATATGATAA+CGG - tig0042429:11036-11055 Msa1462600:intron 15.0%
!! TCTTAATAGATATAGATATA+AGG + tig0042429:11491-11510 None:intergenic 15.0%
!! GAAAATAAAATAGAAATGAT+TGG - tig0042429:12149-12168 Msa1462600:CDS 15.0%
!!! TTTTTCCTTTATTGAAGAAT+GGG + tig0042429:10083-10102 None:intergenic 20.0%
!!! AAATTTGAAACGATTGTTAA+TGG + tig0042429:10325-10344 None:intergenic 20.0%
!! ATAAACTCTTGGAAAATTTA+TGG - tig0042429:10439-10458 Msa1462600:intron 20.0%
!!! AATTATATGTTGTTTCTCTT+TGG + tig0042429:10578-10597 None:intergenic 20.0%
!! TTTATTAATCACAGATATGA+TGG - tig0042429:11114-11133 Msa1462600:CDS 20.0%
!!! TGCAATTTCTAAAAGATTAA+AGG + tig0042429:11232-11251 None:intergenic 20.0%
!!! GTTTCATATAGATGTATTTT+AGG + tig0042429:11267-11286 None:intergenic 20.0%
!! AAAATACATCTATATGAAAC+TGG - tig0042429:11267-11286 Msa1462600:intron 20.0%
!! TTAATTTCACATCATCTATT+TGG - tig0042429:11775-11794 Msa1462600:intron 20.0%
!! TCATGTAAAATCTAATGTAT+AGG - tig0042429:12058-12077 Msa1462600:CDS 20.0%
! TCCTTCAACTAAACTAAAAA+TGG - tig0042429:9880-9899 Msa1462600:three_prime_UTR 25.0%
! GAATATGAAATGGAATAAGA+GGG + tig0042429:9965-9984 None:intergenic 25.0%
!!! TTTTGGTTTGGAATATGAAA+TGG + tig0042429:9975-9994 None:intergenic 25.0%
!! CTTTTTCCTTTATTGAAGAA+TGG + tig0042429:10084-10103 None:intergenic 25.0%
!!! GCTCATTTGTTATTTATGTT+AGG - tig0042429:10361-10380 Msa1462600:intron 25.0%
!!! TCGAAATATGTGATTTTGAT+GGG - tig0042429:10642-10661 Msa1462600:intron 25.0%
! ATGATTAGGAGAAAAGATAT+GGG + tig0042429:10984-11003 None:intergenic 25.0%
! TATGATTAGGAGAAAAGATA+TGG + tig0042429:10985-11004 None:intergenic 25.0%
!!! TCAATATGATAACGGTTTAA+CGG - tig0042429:11044-11063 Msa1462600:intron 25.0%
! GAAAAAGAAAGAGATGAAAT+TGG + tig0042429:11196-11215 None:intergenic 25.0%
! TCTAAAAGATTAAAGGTTGA+AGG + tig0042429:11225-11244 None:intergenic 25.0%
! ACTCTATACCAATAAGTTTA+TGG - tig0042429:11332-11351 Msa1462600:intron 25.0%
! ATGTCTATCCATAAACTTAT+TGG + tig0042429:11343-11362 None:intergenic 25.0%
!! TCTAATATTTTGTCGTAAGA+AGG - tig0042429:11417-11436 Msa1462600:intron 25.0%
! ACAAATTTATCACGTATTTG+AGG + tig0042429:11572-11591 None:intergenic 25.0%
!!! TTTCTATTTAGAAGAGCATT+TGG + tig0042429:11595-11614 None:intergenic 25.0%
! TTAGACACATTTCTTTCATT+TGG - tig0042429:11634-11653 Msa1462600:intron 25.0%
! AATGCAGTAATTACTAAGTA+TGG + tig0042429:11949-11968 None:intergenic 25.0%
GAAAAAATATCAAACCCTCT+TGG - tig0042429:9799-9818 Msa1462600:three_prime_UTR 30.0%
! TTTAGTTTAGTTGAAGGACT+CGG + tig0042429:9878-9897 None:intergenic 30.0%
!!! GCCATTTTTAGTTTAGTTGA+AGG + tig0042429:9884-9903 None:intergenic 30.0%
GGAATATGAAATGGAATAAG+AGG + tig0042429:9966-9985 None:intergenic 30.0%
!!! AGAGATAGTGGTTTTGAATT+TGG + tig0042429:10031-10050 None:intergenic 30.0%
CATTACCCATTCTTCAATAA+AGG - tig0042429:10075-10094 Msa1462600:CDS 30.0%
! ATTTATTTCGCCGCAATTTT+GGG - tig0042429:10169-10188 Msa1462600:CDS 30.0%
TCTTCATTCTAAATGTGGTA+TGG - tig0042429:10200-10219 Msa1462600:CDS 30.0%
TGTTAATGGTGAAGTGAAAA+GGG + tig0042429:10311-10330 None:intergenic 30.0%
TTGTTAATGGTGAAGTGAAA+AGG + tig0042429:10312-10331 None:intergenic 30.0%
!! AAGCTGTTTTCATAAACTCT+TGG - tig0042429:10428-10447 Msa1462600:intron 30.0%
AGATTGTTTGAGTGAACTTA+TGG + tig0042429:10493-10512 None:intergenic 30.0%
AAATCAATTCTGATACTCTC+TGG + tig0042429:10616-10635 None:intergenic 30.0%
! CTCGAAATATGTGATTTTGA+TGG - tig0042429:10641-10660 Msa1462600:intron 30.0%
!! GATTTTGATGGGAAAAATAC+TGG - tig0042429:10653-10672 Msa1462600:intron 30.0%
ATAAAATCAGGTTTGGGTAT+TGG + tig0042429:10689-10708 None:intergenic 30.0%
TTCGAGATAAAATCAGGTTT+GGG + tig0042429:10695-10714 None:intergenic 30.0%
TTTCGAGATAAAATCAGGTT+TGG + tig0042429:10696-10715 None:intergenic 30.0%
TGAGATTTCGAGATAAAATC+AGG + tig0042429:10701-10720 None:intergenic 30.0%
GATCCTAATTCTCATATTTG+CGG - tig0042429:10827-10846 Msa1462600:CDS 30.0%
AAACCGCAAATATGAGAATT+AGG + tig0042429:10833-10852 None:intergenic 30.0%
AATACTGGTGAGAAAATCAT+TGG - tig0042429:10879-10898 Msa1462600:CDS 30.0%
AGCATTTCGCTTATATGATT+AGG + tig0042429:10998-11017 None:intergenic 30.0%
! GCGAAATGCTTTACTTATTT+TGG - tig0042429:11008-11027 Msa1462600:intron 30.0%
! TGATTTTTCATCTATGATGC+AGG - tig0042429:11086-11105 Msa1462600:intron 30.0%
GATTAAAGGTTGAAGGATAT+AGG + tig0042429:11218-11237 None:intergenic 30.0%
AGTGTTAAGATTAATACCTG+TGG + tig0042429:11315-11334 None:intergenic 30.0%
! ATGGATAGACATGATTTTTG+TGG - tig0042429:11351-11370 Msa1462600:intron 30.0%
AGGATATAATGTTACTCTTG+AGG + tig0042429:11539-11558 None:intergenic 30.0%
GAAATGTGTCTAAATAGAGA+AGG + tig0042429:11627-11646 None:intergenic 30.0%
TTGCTCATACAATTTGGATT+GGG - tig0042429:11722-11741 Msa1462600:intron 30.0%
GTAATTACTGCATTAACACT+AGG - tig0042429:11955-11974 Msa1462600:CDS 30.0%
! ATTTGGAGATGAGAAGTATG+AGG + tig0042429:10014-10033 None:intergenic 35.0%
TTCCGTTAAACTAAAAGCTG+CGG + tig0042429:10131-10150 None:intergenic 35.0%
CGGAACAGAAAATAACTTCA+TGG - tig0042429:10146-10165 Msa1462600:CDS 35.0%
! GATTTATTTCGCCGCAATTT+TGG - tig0042429:10168-10187 Msa1462600:CDS 35.0%
GGTTCTCTTCATTCTAAATG+TGG - tig0042429:10195-10214 Msa1462600:CDS 35.0%
! GTATGGATTGATAACTCAAC+TGG - tig0042429:10217-10236 Msa1462600:CDS 35.0%
! ATTGATAACTCAACTGGCTT+TGG - tig0042429:10223-10242 Msa1462600:CDS 35.0%
!!! CTTTTGTTGATGCTGTTTCA+GGG - tig0042429:10251-10270 Msa1462600:CDS 35.0%
!! TGTTGTTTCTCTTTGGCTAT+GGG + tig0042429:10571-10590 None:intergenic 35.0%
!! ATGTTGTTTCTCTTTGGCTA+TGG + tig0042429:10572-10591 None:intergenic 35.0%
! TCATTGGTGAAAGAGCTTTT+CGG - tig0042429:10895-10914 Msa1462600:CDS 35.0%
!!! CTTTTCGGGTTATTTTTGCA+GGG - tig0042429:10910-10929 Msa1462600:CDS 35.0%
ACAATAGTAGTGACAGCTAA+AGG + tig0042429:10945-10964 None:intergenic 35.0%
! GATATGATGGAATTCAACTC+TGG - tig0042429:11127-11146 Msa1462600:CDS 35.0%
! GTATTTGAGGATGTTTTACG+AGG + tig0042429:11559-11578 None:intergenic 35.0%
!!! GATTTGTTTTGCTGTTCAGA+TGG - tig0042429:11678-11697 Msa1462600:intron 35.0%
CTTGCTCATACAATTTGGAT+TGG - tig0042429:11721-11740 Msa1462600:intron 35.0%
! AATTTGGATTGGGAATTCTG+TGG - tig0042429:11732-11751 Msa1462600:intron 35.0%
! TACAGTCATTGTCAGGTTTT+TGG + tig0042429:12185-12204 None:intergenic 35.0%
ACAACTTCTAGTCACCAAGA+GGG + tig0042429:9816-9835 None:intergenic 40.0%
! TCTTGGTGACTAGAAGTTGT+GGG - tig0042429:9816-9835 Msa1462600:three_prime_UTR 40.0%
! AGAAGCAGAGAGTATAAGAG+AGG + tig0042429:9909-9928 None:intergenic 40.0%
AGAGAACAAAGATGGGTGAT+GGG + tig0042429:9942-9961 None:intergenic 40.0%
AAGAGGGAGAGAACAAAGAT+GGG + tig0042429:9949-9968 None:intergenic 40.0%
TAAGAGGGAGAGAACAAAGA+TGG + tig0042429:9950-9969 None:intergenic 40.0%
!!! TTGAGAAGCAGGTTTTGGTT+TGG + tig0042429:9987-10006 None:intergenic 40.0%
!!! CTCCGCAGCTTTTAGTTTAA+CGG - tig0042429:10126-10145 Msa1462600:CDS 40.0%
!!! GCTTTTGTTGATGCTGTTTC+AGG - tig0042429:10250-10269 Msa1462600:CDS 40.0%
CAACAATACCTCGTGAGAAT+CGG + tig0042429:10281-10300 None:intergenic 40.0%
!! CTGCATTAGTCGTTGATTTG+TGG - tig0042429:10767-10786 Msa1462600:CDS 40.0%
! ATATTTGCGGTTTTCCACAG+TGG - tig0042429:10840-10859 Msa1462600:CDS 40.0%
! TTTTCTCACCAGTATTCCGT+AGG + tig0042429:10875-10894 None:intergenic 40.0%
! CATTGGTGAAAGAGCTTTTC+GGG - tig0042429:10896-10915 Msa1462600:CDS 40.0%
!!! GCTTTTCGGGTTATTTTTGC+AGG - tig0042429:10909-10928 Msa1462600:CDS 40.0%
CTGGCATCATAAGAATAACC+AGG - tig0042429:11286-11305 Msa1462600:intron 40.0%
! ACTCTTGAGGATGTTTTACG+AGG + tig0042429:11526-11545 None:intergenic 40.0%
! GTTTCAATTGCTCTGAGTGA+AGG - tig0042429:11656-11675 Msa1462600:intron 40.0%
!!! TGTTTTGCTGTTCAGATGGT+TGG - tig0042429:11682-11701 Msa1462600:intron 40.0%
GGTGTCTTGCTCATACAATT+TGG - tig0042429:11716-11735 Msa1462600:intron 40.0%
!! CACATCATCTATTTGGTGCT+TGG - tig0042429:11782-11801 Msa1462600:CDS 40.0%
!! CATCTATTTGGTGCTTGGAA+TGG - tig0042429:11787-11806 Msa1462600:CDS 40.0%
CATCAAGGATTGCTGCAAAA+GGG + tig0042429:11879-11898 None:intergenic 40.0%
AATCCGCAGGTAATCTTTGA+CGG + tig0042429:11903-11922 None:intergenic 40.0%
ATTACCTGCGGATTTCTACA+AGG - tig0042429:11909-11928 Msa1462600:CDS 40.0%
TAGTTTCAACCTCCATTGGT+AGG - tig0042429:12011-12030 Msa1462600:CDS 40.0%
ATTTCCTTTCCACCTACCAA+TGG + tig0042429:12026-12045 None:intergenic 40.0%
TGTAGTGTGCATCAATAGAC+AGG - tig0042429:12104-12123 Msa1462600:CDS 40.0%
GTAGTGTGCATCAATAGACA+GGG - tig0042429:12105-12124 Msa1462600:CDS 40.0%
ACAAGTGTACAGTCATTGTC+AGG + tig0042429:12192-12211 None:intergenic 40.0%
AATTGTGTGACCCAGAAACA+AGG - tig0042429:12227-12246 Msa1462600:five_prime_UTR 40.0%
! CAAGACAGATCCTTGTTTCT+GGG + tig0042429:12240-12259 None:intergenic 40.0%
CTTGCATAAACCGTGTTCTA+TGG - tig0042429:12256-12275 Msa1462600:five_prime_UTR 40.0%
CACAACTTCTAGTCACCAAG+AGG + tig0042429:9817-9836 None:intergenic 45.0%
! CTCTTGGTGACTAGAAGTTG+TGG - tig0042429:9815-9834 Msa1462600:three_prime_UTR 45.0%
!! AACAAAGATGGGTGATGGGT+TGG + tig0042429:9938-9957 None:intergenic 45.0%
GAGAGAACAAAGATGGGTGA+TGG + tig0042429:9943-9962 None:intergenic 45.0%
AACCACTATCTCTCTCTCAC+AGG - tig0042429:10038-10057 Msa1462600:exon 45.0%
AACCTGTGAGAGAGAGATAG+TGG + tig0042429:10043-10062 None:intergenic 45.0%
TCTCTCACAGGTTCAACTTC+AGG - tig0042429:10050-10069 Msa1462600:CDS 45.0%
GAAAAAGACTCGAGCTTCGT+GGG - tig0042429:10097-10116 Msa1462600:CDS 45.0%
GAGAACCACACCCAAAATTG+CGG + tig0042429:10182-10201 None:intergenic 45.0%
CCTGCAGAGTAACATGTCAA+GGG + tig0042429:10797-10816 None:intergenic 45.0%
ACCTGCAGAGTAACATGTCA+AGG + tig0042429:10798-10817 None:intergenic 45.0%
TTGACATGTTACTCTGCAGG+TGG - tig0042429:10797-10816 Msa1462600:CDS 45.0%
!! CACAGAAGTTGATGAATCCC+CGG + tig0042429:11168-11187 None:intergenic 45.0%
AAGAATAACCAGGCATCCAC+AGG - tig0042429:11296-11315 Msa1462600:intron 45.0%
GATTAATACCTGTGGATGCC+TGG + tig0042429:11307-11326 None:intergenic 45.0%
! AGATGGTTGGTCAGGTAATC+TGG - tig0042429:11695-11714 Msa1462600:intron 45.0%
! TTGGTGCTTGGAATGGAGAT+AGG - tig0042429:11794-11813 Msa1462600:CDS 45.0%
! AGGCGATTAGCTCAAAGACA+TGG - tig0042429:11814-11833 Msa1462600:CDS 45.0%
CCATCAAGGATTGCTGCAAA+AGG + tig0042429:11880-11899 None:intergenic 45.0%
! CCTTTTGCAGCAATCCTTGA+TGG - tig0042429:11877-11896 Msa1462600:CDS 45.0%
GTAATCTTTGACGGCCATCA+AGG + tig0042429:11894-11913 None:intergenic 45.0%
AACTCCTTGTAGAAATCCGC+AGG + tig0042429:11916-11935 None:intergenic 45.0%
AACTAGCAGCCTGCATAAGA+GGG + tig0042429:11996-12015 None:intergenic 45.0%
AAACTAGCAGCCTGCATAAG+AGG + tig0042429:11997-12016 None:intergenic 45.0%
! CTGCTAGTTTCAACCTCCAT+TGG - tig0042429:12007-12026 Msa1462600:CDS 45.0%
TTTCAACCTCCATTGGTAGG+TGG - tig0042429:12014-12033 Msa1462600:CDS 45.0%
CATCAATAGACAGGGTCACA+GGG - tig0042429:12113-12132 Msa1462600:CDS 45.0%
! GCAAGACAGATCCTTGTTTC+TGG + tig0042429:12241-12260 None:intergenic 45.0%
TGGTGACTAGAAGTTGTGGG+TGG - tig0042429:9819-9838 Msa1462600:three_prime_UTR 50.0%
!!! GAGCGTTGAGAAGCAGGTTT+TGG + tig0042429:9992-10011 None:intergenic 50.0%
!! TATGAGGAGCGTTGAGAAGC+AGG + tig0042429:9998-10017 None:intergenic 50.0%
GGAAAAAGACTCGAGCTTCG+TGG - tig0042429:10096-10115 Msa1462600:CDS 50.0%
!! TTTCGCCGCAATTTTGGGTG+TGG - tig0042429:10174-10193 Msa1462600:CDS 50.0%
CCCTTGACATGTTACTCTGC+AGG - tig0042429:10794-10813 Msa1462600:CDS 50.0%
!! ATGGCTAGCCTACGGAATAC+TGG - tig0042429:10864-10883 Msa1462600:CDS 50.0%
CGGGGATTCATCAACTTCTG+TGG - tig0042429:11166-11185 Msa1462600:CDS 50.0%
! TGCTGTTCAGATGGTTGGTC+AGG - tig0042429:11687-11706 Msa1462600:intron 50.0%
GTGGCTGTTGCAGCTTCAAT+TGG - tig0042429:11751-11770 Msa1462600:intron 50.0%
TGGCCGTCAAAGATTACCTG+CGG - tig0042429:11897-11916 Msa1462600:CDS 50.0%
CTTTGCACACCCTCTTATGC+AGG - tig0042429:11984-12003 Msa1462600:CDS 50.0%
ACCTCCATTGGTAGGTGGAA+AGG - tig0042429:12019-12038 Msa1462600:CDS 50.0%
TCCTTTCCACCTACCAATGG+AGG + tig0042429:12023-12042 None:intergenic 50.0%
TTGATGCACACTACAGCACG+TGG + tig0042429:12099-12118 None:intergenic 50.0%
GCATCAATAGACAGGGTCAC+AGG - tig0042429:12112-12131 Msa1462600:CDS 50.0%
! TGCGGTTTTCCACAGTGGCA+TGG - tig0042429:10845-10864 Msa1462600:CDS 55.0%
!! ACAGTGGCATGGCTAGCCTA+CGG - tig0042429:10856-10875 Msa1462600:CDS 55.0%
! GATGAATCCCCGGAGTACTC+TGG + tig0042429:11158-11177 None:intergenic 55.0%
AGGGCTCTCCGATTCTCACG+AGG - tig0042429:10270-10289 Msa1462600:CDS 60.0%
! GTAGGCTAGCCATGCCACTG+TGG + tig0042429:10857-10876 None:intergenic 60.0%
! CTGGCAGCTCCAGAGTACTC+CGG - tig0042429:11146-11165 Msa1462600:CDS 60.0%
! TGGCAGCTCCAGAGTACTCC+GGG - tig0042429:11147-11166 Msa1462600:CDS 60.0%
! GGCAGCTCCAGAGTACTCCG+GGG - tig0042429:11148-11167 Msa1462600:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0042429 gene 9784 12287 9784 ID=Msa1462600;Name=Msa1462600
tig0042429 mRNA 9784 12287 9784 ID=Msa1462600-mRNA-1;Parent=Msa1462600;Name=Msa1462600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=115|1|1|1|1|1|4|255|361
tig0042429 exon 9784 10374 9784 ID=Msa1462600-mRNA-1:exon:23738;Parent=Msa1462600-mRNA-1
tig0042429 exon 10754 10963 10754 ID=Msa1462600-mRNA-1:exon:23737;Parent=Msa1462600-mRNA-1
tig0042429 exon 11109 11255 11109 ID=Msa1462600-mRNA-1:exon:23736;Parent=Msa1462600-mRNA-1
tig0042429 exon 11780 12287 11780 ID=Msa1462600-mRNA-1:exon:23735;Parent=Msa1462600-mRNA-1
tig0042429 five_prime_UTR 12173 12287 12173 ID=Msa1462600-mRNA-1:five_prime_utr;Parent=Msa1462600-mRNA-1
tig0042429 CDS 11780 12172 11780 ID=Msa1462600-mRNA-1:cds;Parent=Msa1462600-mRNA-1
tig0042429 CDS 11109 11255 11109 ID=Msa1462600-mRNA-1:cds;Parent=Msa1462600-mRNA-1
tig0042429 CDS 10754 10963 10754 ID=Msa1462600-mRNA-1:cds;Parent=Msa1462600-mRNA-1
tig0042429 CDS 10039 10374 10039 ID=Msa1462600-mRNA-1:cds;Parent=Msa1462600-mRNA-1
tig0042429 three_prime_UTR 9784 10038 9784 ID=Msa1462600-mRNA-1:three_prime_utr;Parent=Msa1462600-mRNA-1
Gene Sequence

>Msa1462600

ATGGCTGCCTCTCTTATACTCTCTGCTTCTTTCTCTCCAACCCATCACCCATCTTTGTTCTCTCCCTCTTATTCCATTTCATATTCCAAACCAAAACCTGCTTCTCAACGCTCCTCATACTTCTCATCTCCAAATTCAAAACCACTATCTCTCTCTCACAGGTTCAACTTCAGGTTCATTACCCATTCTTCAATAAAGGAAAAAGACTCGAGCTTCGTGGGAGAAGACTCCGCAGCTTTTAGTTTAACGGAACAGAAAATAACTTCATGGATTTATTTCGCCGCAATTTTGGGTGTGGTTCTCTTCATTCTAAATGTGGTATGGATTGATAACTCAACTGGCTTTGGTAAAGCTTTTGTTGATGCTGTTTCAGGGCTCTCCGATTCTCACGAGGTGGTAATGTTGATCCTAATTCTCATATTTGCGGTTTTCCACAGTGGCATGGCTAGCCTACGGAATACTGGTGAGAAAATCATTGGTGAAAGAGCTTTTCGGGTTATTTTTGCAGGGATATCACTACCTTTAGCTGTCACTACTATTGTGTATTTTATTAATCACAGATATGATGGAATTCAACTCTGGCAGCTCCAGAGTACTCCGGGGATTCATCAACTTCTGTGGCTTTCCAATTTCATCTCTTTCTTTTTCCTATATCCTTCAACCTTTAATCTTTTAGAAATTGCAGCAGTTGACAAGCCTAAAATACATCTATATGAAACTGGCATCATAAGAATAACCAGGCATCCACAGATGGTTGGTCAGGTAATCTGGTGTCTTGCTCATACAATTTGGATTGGGAATTCTGTGGCTGTTGCAGCTTCAATTGGCTTAATTTCACATCATCTATTTGGTGCTTGGAATGGAGATAGGCGATTAGCTCAAAGACATGGAGAAGATTTTGAGATAGTTAAGCGTCGAACAAGTATTGTCCCTTTTGCAGCAATCCTTGATGGCCGTCAAAGATTACCTGCGGATTTCTACAAGGAGTTTATTAGATTACCATACTTAGTAATTACTGCATTAACACTAGGAGCTTACTTTGCACACCCTCTTATGCAGGCTGCTAGTTTCAACCTCCATTGGTAG

Protein sequence

>Msa1462600

MAASLILSASFSPTHHPSLFSPSYSISYSKPKPASQRSSYFSSPNSKPLSLSHRFNFRFITHSSIKEKDSSFVGEDSAAFSLTEQKITSWIYFAAILGVVLFILNVVWIDNSTGFGKAFVDAVSGLSDSHEVVMLILILIFAVFHSGMASLRNTGEKIIGERAFRVIFAGISLPLAVTTIVYFINHRYDGIQLWQLQSTPGIHQLLWLSNFISFFFLYPSTFNLLEIAAVDKPKIHLYETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLISHHLFGAWNGDRRLAQRHGEDFEIVKRRTSIVPFAAILDGRQRLPADFYKEFIRLPYLVITALTLGAYFAHPLMQAASFNLHW*