AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0468020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468020 MtrunA17_Chr3g0122231 94.737 361 16 1 1 361 1 358 0.0 665
Msa0468020 MtrunA17_Chr8g0377611 71.720 343 87 3 22 361 29 364 0.0 525
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468020 AT1G10830.1 76.897 290 67 0 72 361 78 367 1.48e-177 498
Msa0468020 AT1G10830.2 73.936 188 49 0 72 259 78 265 7.90e-103 305
Msa0468020 AT1G10830.3 74.545 110 28 0 72 181 78 187 1.07e-52 174

Find 96 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTTCTAAAAGATTAA+AGG 0.126652 3_3:-69530267 None:intergenic
GATTTATTTCGCCGCAATTT+TGG 0.154342 3_3:+69529206 Msa0468020:CDS
TTAATTTCACATCATCTATT+TGG 0.187467 3_3:+69530813 Msa0468020:CDS
GCAAGACAGATCCTTGTTTC+TGG 0.192408 3_3:-69531276 None:intergenic
CATTACCCATTCTTCAATAA+AGG 0.261188 3_3:+69529113 Msa0468020:CDS
AAACCGCAAATATGAGAATT+AGG 0.277606 3_3:-69529868 None:intergenic
GGTGTCTTGCTCATACAATT+TGG 0.284942 3_3:+69530754 Msa0468020:CDS
TATGAGGAGCGTTGAGAAGT+AGG 0.327710 3_3:-69529033 None:intergenic
AATGCAGTAATTACTAAGTA+TGG 0.338106 3_3:-69530984 None:intergenic
GTGGCTGTTGCAGCTTCAAT+TGG 0.349115 3_3:+69530789 Msa0468020:CDS
AGATGGTTGGTCAGGTAATC+TGG 0.354286 3_3:+69530733 Msa0468020:intron
TGCTGTTCAGATGGTTGGTC+AGG 0.355164 3_3:+69530725 Msa0468020:intron
GAGCGTTGAGAAGTAGGTTT+TGG 0.361636 3_3:-69529027 None:intergenic
CACATCATCTATTTGGTGCT+TGG 0.366412 3_3:+69530820 Msa0468020:CDS
AAAATACATCTATATGAAAC+TGG 0.374022 3_3:+69530305 Msa0468020:CDS
TCTCTCACAGGTTCAACTTC+AGG 0.382575 3_3:+69529088 Msa0468020:CDS
CGGAACAGAAAATAACTTCA+TGG 0.384156 3_3:+69529184 Msa0468020:CDS
TTTATTAATCACAGATATGA+TGG 0.389024 3_3:+69530152 Msa0468020:CDS
CCATCAAGGATTGCTGCAAA+AGG 0.390457 3_3:-69530915 None:intergenic
ATTGATAACTCAACTGGCTT+TGG 0.394276 3_3:+69529261 Msa0468020:CDS
CAAGACAGATCCTTGTTTCT+GGG 0.398701 3_3:-69531275 None:intergenic
GATCCTAATTCTCATATTTG+CGG 0.403823 3_3:+69529865 Msa0468020:CDS
GAAAATAAAATAGAAATGAT+TGG 0.405818 3_3:+69531187 Msa0468020:three_prime_UTR
CTTGCTCATACAATTTGGAT+TGG 0.409860 3_3:+69530759 Msa0468020:CDS
TCTAAAAGATTAAAGGTTGA+AGG 0.413154 3_3:-69530260 None:intergenic
TCATGTAAAATCTAATGTAT+AGG 0.422428 3_3:+69531096 Msa0468020:three_prime_UTR
TCTTCATTCTAAATGTGGTA+TGG 0.429366 3_3:+69529238 Msa0468020:CDS
TTGCTCATACAATTTGGATT+GGG 0.435090 3_3:+69530760 Msa0468020:CDS
CTTGCATAAACCGTGTTCTA+TGG 0.437728 3_3:+69531294 Msa0468020:three_prime_UTR
GGAATATGAAATGGAATAAG+AGG 0.440648 3_3:-69529001 None:intergenic
AAACTAGCAGCCTGCATAAG+AGG 0.442374 3_3:-69531032 None:intergenic
CTTTGCACACCCTCTTATGC+AGG 0.452520 3_3:+69531022 Msa0468020:CDS
GATTAAAGGTTGAAGGATAT+AGG 0.458002 3_3:-69530253 None:intergenic
ACAAGTGTACAGTCATTGTC+AGG 0.458144 3_3:-69531227 None:intergenic
ATGGCTAGCCTACGGAATAC+TGG 0.465850 3_3:+69529902 Msa0468020:CDS
GTATGGATTGATAACTCAAC+TGG 0.468553 3_3:+69529255 Msa0468020:CDS
CATCTATTTGGTGCTTGGAA+TGG 0.469784 3_3:+69530825 Msa0468020:CDS
GATTAATACCTGTGGATGCC+TGG 0.472549 3_3:-69530342 None:intergenic
AACAATGATGGGTGATGGGT+TGG 0.476075 3_3:-69528973 None:intergenic
AATACTGGTGAGAAAATCAT+TGG 0.476132 3_3:+69529917 Msa0468020:CDS
GATGAATCCCCGGAGTACTC+TGG 0.479621 3_3:-69530193 None:intergenic
TGGCAGCTCCAGAGTACTCC+GGG 0.483611 3_3:+69530185 Msa0468020:CDS
CAACAATACCTCGTGAGAAT+CGG 0.485418 3_3:-69529316 None:intergenic
ATTTGGAGATGAGAAGTATG+AGG 0.486179 3_3:-69529049 None:intergenic
TAAGAGGGAGAGAACAATGA+TGG 0.491462 3_3:-69528985 None:intergenic
TGTAGTGTGCATCAATAGAC+AGG 0.491933 3_3:+69531142 Msa0468020:three_prime_UTR
GCATCAATAGACAGGGTCAC+AGG 0.495328 3_3:+69531150 Msa0468020:three_prime_UTR
CTGCTAGTTTCAACCTCCAT+TGG 0.497102 3_3:+69531045 Msa0468020:CDS
GAGAGAACAATGATGGGTGA+TGG 0.501885 3_3:-69528978 None:intergenic
TTGGTGCTTGGAATGGAGAT+AGG 0.502563 3_3:+69530832 Msa0468020:CDS
AATCCGCAGGTAATCTTTGA+CGG 0.502619 3_3:-69530938 None:intergenic
AACCTGTGAGAGAGAGATAG+TGG 0.513143 3_3:-69529078 None:intergenic
TTTAGTTTAGTTGAAGGACT+TGG 0.513559 3_3:-69528913 None:intergenic
GGTTCTCTTCATTCTAAATG+TGG 0.519664 3_3:+69529233 Msa0468020:CDS
CATCAAGGATTGCTGCAAAA+GGG 0.524831 3_3:-69530914 None:intergenic
ATTTCCTTTCCACCTACCAA+TGG 0.531822 3_3:-69531061 None:intergenic
ACAATAGTAGTGACAGCTAA+AGG 0.535492 3_3:-69529980 None:intergenic
ACCTCCATTGGTAGGTGGAA+AGG 0.536645 3_3:+69531057 Msa0468020:exon
ATTACCTGCGGATTTCTACA+AGG 0.539323 3_3:+69530947 Msa0468020:CDS
TAGTTTCAACCTCCATTGGT+AGG 0.542093 3_3:+69531049 Msa0468020:CDS
TCTTGGTGACTAGAAGTTGT+GGG 0.542096 3_3:+69528854 Msa0468020:five_prime_UTR
AGAGAACAATGATGGGTGAT+GGG 0.543117 3_3:-69528977 None:intergenic
AAGAGGGAGAGAACAATGAT+GGG 0.545518 3_3:-69528984 None:intergenic
CACAGAAGTTGATGAATCCC+CGG 0.546615 3_3:-69530203 None:intergenic
GTAATCTTTGACGGCCATCA+AGG 0.548368 3_3:-69530929 None:intergenic
AACTCCTTGTAGAAATCCGC+AGG 0.550585 3_3:-69530951 None:intergenic
AAGAATAACCAGGCATCCAC+AGG 0.553400 3_3:+69530334 Msa0468020:CDS
CTCTTGGTGACTAGAAGTTG+TGG 0.553988 3_3:+69528853 Msa0468020:five_prime_UTR
CGGGGATTCATCAACTTCTG+TGG 0.555871 3_3:+69530204 Msa0468020:CDS
TCCTTTCCACCTACCAATGG+AGG 0.559081 3_3:-69531058 None:intergenic
GATATGATGGAATTCAACTC+TGG 0.560955 3_3:+69530165 Msa0468020:CDS
CTGGCAGCTCCAGAGTACTC+CGG 0.564920 3_3:+69530184 Msa0468020:CDS
GAATATGAAATGGAATAAGA+GGG 0.569325 3_3:-69529000 None:intergenic
AACCACTATCTCTCTCTCAC+AGG 0.578529 3_3:+69529076 Msa0468020:CDS
AACTAGCAGCCTGCATAAGA+GGG 0.580769 3_3:-69531031 None:intergenic
GTAATTACTGCATTAACACT+AGG 0.589570 3_3:+69530993 Msa0468020:CDS
CACAACTTCTAGTCACCAAG+AGG 0.595441 3_3:-69528852 None:intergenic
CATCAATAGACAGGGTCACA+GGG 0.597757 3_3:+69531151 Msa0468020:three_prime_UTR
AGAAGCAGAGAGTATAAGAG+AGG 0.598033 3_3:-69528944 None:intergenic
CTGGCATCATAAGAATAACC+AGG 0.600338 3_3:+69530324 Msa0468020:CDS
TTCCGTTAAACTAAAAGCTG+CGG 0.611809 3_3:-69529166 None:intergenic
TTTCAACCTCCATTGGTAGG+TGG 0.613440 3_3:+69531052 Msa0468020:exon
ACAGTGGCATGGCTAGCCTA+CGG 0.614954 3_3:+69529894 Msa0468020:CDS
AATTGTGTGACCCAGAAACA+AGG 0.617380 3_3:+69531265 Msa0468020:three_prime_UTR
AGGCGATTAGCTCAAAGACA+TGG 0.626170 3_3:+69530852 Msa0468020:CDS
GAGAACCACACCCAAAATTG+CGG 0.633481 3_3:-69529217 None:intergenic
AGGGCTCTCCGATTCTCACG+AGG 0.645915 3_3:+69529308 Msa0468020:CDS
TGGTGACTAGAAGTTGTGGG+TGG 0.660340 3_3:+69528857 Msa0468020:five_prime_UTR
TGGCCGTCAAAGATTACCTG+CGG 0.666868 3_3:+69530935 Msa0468020:CDS
ACAACTTCTAGTCACCAAGA+GGG 0.683299 3_3:-69528851 None:intergenic
AATTTGGATTGGGAATTCTG+TGG 0.685087 3_3:+69530770 Msa0468020:CDS
TTGATGCACACTACAGCACG+TGG 0.701313 3_3:-69531134 None:intergenic
TTAATGTGCACCATAGAACA+CGG 0.707425 3_3:-69531304 None:intergenic
GTAGTGTGCATCAATAGACA+GGG 0.716909 3_3:+69531143 Msa0468020:three_prime_UTR
GGCAGCTCCAGAGTACTCCG+GGG 0.727870 3_3:+69530186 Msa0468020:CDS
GTAGGCTAGCCATGCCACTG+TGG 0.748430 3_3:-69529892 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACATTTCAATATGATAA+CGG + chr3_3:69530074-69530093 Msa0468020:intron 15.0%
!! TCTTAATAGATATAGATATA+AGG - chr3_3:69530529-69530548 None:intergenic 15.0%
!! GAAAATAAAATAGAAATGAT+TGG + chr3_3:69531187-69531206 Msa0468020:three_prime_UTR 15.0%
!!! TTTTTCCTTTATTGAAGAAT+GGG - chr3_3:69529121-69529140 None:intergenic 20.0%
!!! AAATTTGAAACGATTGTTAA+TGG - chr3_3:69529363-69529382 None:intergenic 20.0%
!! ATAAACTCTTGGAAAATTTA+TGG + chr3_3:69529477-69529496 Msa0468020:intron 20.0%
!!! AATTATATGTTGTTTCTCTT+TGG - chr3_3:69529616-69529635 None:intergenic 20.0%
!! TTTATTAATCACAGATATGA+TGG + chr3_3:69530152-69530171 Msa0468020:CDS 20.0%
!!! TGCAATTTCTAAAAGATTAA+AGG - chr3_3:69530270-69530289 None:intergenic 20.0%
!!! GTTTCATATAGATGTATTTT+AGG - chr3_3:69530305-69530324 None:intergenic 20.0%
!! AAAATACATCTATATGAAAC+TGG + chr3_3:69530305-69530324 Msa0468020:CDS 20.0%
!! TTAATTTCACATCATCTATT+TGG + chr3_3:69530813-69530832 Msa0468020:CDS 20.0%
!! TCATGTAAAATCTAATGTAT+AGG + chr3_3:69531096-69531115 Msa0468020:three_prime_UTR 20.0%
! TCCTTCAACTAAACTAAAAA+TGG + chr3_3:69528918-69528937 Msa0468020:exon 25.0%
! GAATATGAAATGGAATAAGA+GGG - chr3_3:69529003-69529022 None:intergenic 25.0%
!!! TTTTGGTTTGGAATATGAAA+TGG - chr3_3:69529013-69529032 None:intergenic 25.0%
!! CTTTTTCCTTTATTGAAGAA+TGG - chr3_3:69529122-69529141 None:intergenic 25.0%
!!! GCTCATTTGTTATTTATGTT+AGG + chr3_3:69529399-69529418 Msa0468020:intron 25.0%
!!! TCGAAATATGTGATTTTGAT+GGG + chr3_3:69529680-69529699 Msa0468020:intron 25.0%
! ATGATTAGGAGAAAAGATAT+GGG - chr3_3:69530022-69530041 None:intergenic 25.0%
! TATGATTAGGAGAAAAGATA+TGG - chr3_3:69530023-69530042 None:intergenic 25.0%
!!! TCAATATGATAACGGTTTAA+CGG + chr3_3:69530082-69530101 Msa0468020:intron 25.0%
! GAAAAAGAAAGAGATGAAAT+TGG - chr3_3:69530234-69530253 None:intergenic 25.0%
! TCTAAAAGATTAAAGGTTGA+AGG - chr3_3:69530263-69530282 None:intergenic 25.0%
! ACTCTATACCAATAAGTTTA+TGG + chr3_3:69530370-69530389 Msa0468020:intron 25.0%
! ATGTCTATCCATAAACTTAT+TGG - chr3_3:69530381-69530400 None:intergenic 25.0%
!! TCTAATATTTTGTCGTAAGA+AGG + chr3_3:69530455-69530474 Msa0468020:intron 25.0%
! ACAAATTTATCACGTATTTG+AGG - chr3_3:69530610-69530629 None:intergenic 25.0%
!!! TTTCTATTTAGAAGAGCATT+TGG - chr3_3:69530633-69530652 None:intergenic 25.0%
! TTAGACACATTTCTTTCATT+TGG + chr3_3:69530672-69530691 Msa0468020:intron 25.0%
! AATGCAGTAATTACTAAGTA+TGG - chr3_3:69530987-69531006 None:intergenic 25.0%
GAAAAAATATCAAACCCTCT+TGG + chr3_3:69528837-69528856 Msa0468020:five_prime_UTR 30.0%
! TTTAGTTTAGTTGAAGGACT+TGG - chr3_3:69528916-69528935 None:intergenic 30.0%
!!! GCCATTTTTAGTTTAGTTGA+AGG - chr3_3:69528922-69528941 None:intergenic 30.0%
GGAATATGAAATGGAATAAG+AGG - chr3_3:69529004-69529023 None:intergenic 30.0%
!!! AGAGATAGTGGTTTTGAATT+TGG - chr3_3:69529069-69529088 None:intergenic 30.0%
CATTACCCATTCTTCAATAA+AGG + chr3_3:69529113-69529132 Msa0468020:CDS 30.0%
! ATTTATTTCGCCGCAATTTT+GGG + chr3_3:69529207-69529226 Msa0468020:CDS 30.0%
TCTTCATTCTAAATGTGGTA+TGG + chr3_3:69529238-69529257 Msa0468020:CDS 30.0%
TGTTAATGGTGAAGTGAAAA+GGG - chr3_3:69529349-69529368 None:intergenic 30.0%
TTGTTAATGGTGAAGTGAAA+AGG - chr3_3:69529350-69529369 None:intergenic 30.0%
!! AAGCTGTTTTCATAAACTCT+TGG + chr3_3:69529466-69529485 Msa0468020:intron 30.0%
AGATTGTTTGAGTGAACTTA+TGG - chr3_3:69529531-69529550 None:intergenic 30.0%
AAATCAATTCTGATACTCTC+TGG - chr3_3:69529654-69529673 None:intergenic 30.0%
! CTCGAAATATGTGATTTTGA+TGG + chr3_3:69529679-69529698 Msa0468020:intron 30.0%
!! GATTTTGATGGGAAAAATAC+TGG + chr3_3:69529691-69529710 Msa0468020:intron 30.0%
ATAAAATCAGGTTTGGGTAT+TGG - chr3_3:69529727-69529746 None:intergenic 30.0%
TTCGAGATAAAATCAGGTTT+GGG - chr3_3:69529733-69529752 None:intergenic 30.0%
TTTCGAGATAAAATCAGGTT+TGG - chr3_3:69529734-69529753 None:intergenic 30.0%
TGAGATTTCGAGATAAAATC+AGG - chr3_3:69529739-69529758 None:intergenic 30.0%
GATCCTAATTCTCATATTTG+CGG + chr3_3:69529865-69529884 Msa0468020:CDS 30.0%
AAACCGCAAATATGAGAATT+AGG - chr3_3:69529871-69529890 None:intergenic 30.0%
AATACTGGTGAGAAAATCAT+TGG + chr3_3:69529917-69529936 Msa0468020:CDS 30.0%
AGCATTTCGCTTATATGATT+AGG - chr3_3:69530036-69530055 None:intergenic 30.0%
! GCGAAATGCTTTACTTATTT+TGG + chr3_3:69530046-69530065 Msa0468020:intron 30.0%
! TGATTTTTCATCTATGATGC+AGG + chr3_3:69530124-69530143 Msa0468020:intron 30.0%
GATTAAAGGTTGAAGGATAT+AGG - chr3_3:69530256-69530275 None:intergenic 30.0%
AGTGTTAAGATTAATACCTG+TGG - chr3_3:69530353-69530372 None:intergenic 30.0%
! ATGGATAGACATGATTTTTG+TGG + chr3_3:69530389-69530408 Msa0468020:intron 30.0%
AGGATATAATGTTACTCTTG+AGG - chr3_3:69530577-69530596 None:intergenic 30.0%
GAAATGTGTCTAAATAGAGA+AGG - chr3_3:69530665-69530684 None:intergenic 30.0%
TTGCTCATACAATTTGGATT+GGG + chr3_3:69530760-69530779 Msa0468020:CDS 30.0%
GTAATTACTGCATTAACACT+AGG + chr3_3:69530993-69531012 Msa0468020:CDS 30.0%
!!! TTGAGAAGTAGGTTTTGGTT+TGG - chr3_3:69529025-69529044 None:intergenic 35.0%
! ATTTGGAGATGAGAAGTATG+AGG - chr3_3:69529052-69529071 None:intergenic 35.0%
TTCCGTTAAACTAAAAGCTG+CGG - chr3_3:69529169-69529188 None:intergenic 35.0%
CGGAACAGAAAATAACTTCA+TGG + chr3_3:69529184-69529203 Msa0468020:CDS 35.0%
! GATTTATTTCGCCGCAATTT+TGG + chr3_3:69529206-69529225 Msa0468020:CDS 35.0%
GGTTCTCTTCATTCTAAATG+TGG + chr3_3:69529233-69529252 Msa0468020:CDS 35.0%
! GTATGGATTGATAACTCAAC+TGG + chr3_3:69529255-69529274 Msa0468020:CDS 35.0%
! ATTGATAACTCAACTGGCTT+TGG + chr3_3:69529261-69529280 Msa0468020:CDS 35.0%
!!! CTTTTGTTGATGCTGTTTCA+GGG + chr3_3:69529289-69529308 Msa0468020:CDS 35.0%
!! TGTTGTTTCTCTTTGGCTAT+GGG - chr3_3:69529609-69529628 None:intergenic 35.0%
!! ATGTTGTTTCTCTTTGGCTA+TGG - chr3_3:69529610-69529629 None:intergenic 35.0%
! TCATTGGTGAAAGAGCTTTT+CGG + chr3_3:69529933-69529952 Msa0468020:CDS 35.0%
!!! CTTTTCGGGTTATTTTTGCA+GGG + chr3_3:69529948-69529967 Msa0468020:CDS 35.0%
ACAATAGTAGTGACAGCTAA+AGG - chr3_3:69529983-69530002 None:intergenic 35.0%
! GATATGATGGAATTCAACTC+TGG + chr3_3:69530165-69530184 Msa0468020:CDS 35.0%
! GTATTTGAGGATGTTTTACG+AGG - chr3_3:69530597-69530616 None:intergenic 35.0%
!!! GATTTGTTTTGCTGTTCAGA+TGG + chr3_3:69530716-69530735 Msa0468020:intron 35.0%
CTTGCTCATACAATTTGGAT+TGG + chr3_3:69530759-69530778 Msa0468020:CDS 35.0%
! AATTTGGATTGGGAATTCTG+TGG + chr3_3:69530770-69530789 Msa0468020:CDS 35.0%
! TACAGTCATTGTCAGGTTTT+TGG - chr3_3:69531223-69531242 None:intergenic 35.0%
ACAACTTCTAGTCACCAAGA+GGG - chr3_3:69528854-69528873 None:intergenic 40.0%
! TCTTGGTGACTAGAAGTTGT+GGG + chr3_3:69528854-69528873 Msa0468020:five_prime_UTR 40.0%
! AGAAGCAGAGAGTATAAGAG+AGG - chr3_3:69528947-69528966 None:intergenic 40.0%
!! AGAGAACAATGATGGGTGAT+GGG - chr3_3:69528980-69528999 None:intergenic 40.0%
AAGAGGGAGAGAACAATGAT+GGG - chr3_3:69528987-69529006 None:intergenic 40.0%
TAAGAGGGAGAGAACAATGA+TGG - chr3_3:69528988-69529007 None:intergenic 40.0%
!!! CTCCGCAGCTTTTAGTTTAA+CGG + chr3_3:69529164-69529183 Msa0468020:CDS 40.0%
!!! GCTTTTGTTGATGCTGTTTC+AGG + chr3_3:69529288-69529307 Msa0468020:CDS 40.0%
CAACAATACCTCGTGAGAAT+CGG - chr3_3:69529319-69529338 None:intergenic 40.0%
!! CTGCATTAGTCGTTGATTTG+TGG + chr3_3:69529805-69529824 Msa0468020:intron 40.0%
! ATATTTGCGGTTTTCCACAG+TGG + chr3_3:69529878-69529897 Msa0468020:CDS 40.0%
! TTTTCTCACCAGTATTCCGT+AGG - chr3_3:69529913-69529932 None:intergenic 40.0%
! CATTGGTGAAAGAGCTTTTC+GGG + chr3_3:69529934-69529953 Msa0468020:CDS 40.0%
!!! GCTTTTCGGGTTATTTTTGC+AGG + chr3_3:69529947-69529966 Msa0468020:CDS 40.0%
CTGGCATCATAAGAATAACC+AGG + chr3_3:69530324-69530343 Msa0468020:CDS 40.0%
! ACTCTTGAGGATGTTTTACG+AGG - chr3_3:69530564-69530583 None:intergenic 40.0%
! GTTTCAATTGCTCTGAGTGA+AGG + chr3_3:69530694-69530713 Msa0468020:intron 40.0%
!!! TGTTTTGCTGTTCAGATGGT+TGG + chr3_3:69530720-69530739 Msa0468020:intron 40.0%
GGTGTCTTGCTCATACAATT+TGG + chr3_3:69530754-69530773 Msa0468020:CDS 40.0%
!! CACATCATCTATTTGGTGCT+TGG + chr3_3:69530820-69530839 Msa0468020:CDS 40.0%
!! CATCTATTTGGTGCTTGGAA+TGG + chr3_3:69530825-69530844 Msa0468020:CDS 40.0%
CATCAAGGATTGCTGCAAAA+GGG - chr3_3:69530917-69530936 None:intergenic 40.0%
AATCCGCAGGTAATCTTTGA+CGG - chr3_3:69530941-69530960 None:intergenic 40.0%
ATTACCTGCGGATTTCTACA+AGG + chr3_3:69530947-69530966 Msa0468020:CDS 40.0%
TAGTTTCAACCTCCATTGGT+AGG + chr3_3:69531049-69531068 Msa0468020:CDS 40.0%
ATTTCCTTTCCACCTACCAA+TGG - chr3_3:69531064-69531083 None:intergenic 40.0%
TGTAGTGTGCATCAATAGAC+AGG + chr3_3:69531142-69531161 Msa0468020:three_prime_UTR 40.0%
GTAGTGTGCATCAATAGACA+GGG + chr3_3:69531143-69531162 Msa0468020:three_prime_UTR 40.0%
ACAAGTGTACAGTCATTGTC+AGG - chr3_3:69531230-69531249 None:intergenic 40.0%
AATTGTGTGACCCAGAAACA+AGG + chr3_3:69531265-69531284 Msa0468020:three_prime_UTR 40.0%
! CAAGACAGATCCTTGTTTCT+GGG - chr3_3:69531278-69531297 None:intergenic 40.0%
CTTGCATAAACCGTGTTCTA+TGG + chr3_3:69531294-69531313 Msa0468020:three_prime_UTR 40.0%
CACAACTTCTAGTCACCAAG+AGG - chr3_3:69528855-69528874 None:intergenic 45.0%
! CTCTTGGTGACTAGAAGTTG+TGG + chr3_3:69528853-69528872 Msa0468020:five_prime_UTR 45.0%
!! AACAATGATGGGTGATGGGT+TGG - chr3_3:69528976-69528995 None:intergenic 45.0%
!! GAGAGAACAATGATGGGTGA+TGG - chr3_3:69528981-69529000 None:intergenic 45.0%
!!! GAGCGTTGAGAAGTAGGTTT+TGG - chr3_3:69529030-69529049 None:intergenic 45.0%
!! TATGAGGAGCGTTGAGAAGT+AGG - chr3_3:69529036-69529055 None:intergenic 45.0%
AACCACTATCTCTCTCTCAC+AGG + chr3_3:69529076-69529095 Msa0468020:CDS 45.0%
AACCTGTGAGAGAGAGATAG+TGG - chr3_3:69529081-69529100 None:intergenic 45.0%
TCTCTCACAGGTTCAACTTC+AGG + chr3_3:69529088-69529107 Msa0468020:CDS 45.0%
GAAAAAGACTCGAGCTTCGT+GGG + chr3_3:69529135-69529154 Msa0468020:CDS 45.0%
GAGAACCACACCCAAAATTG+CGG - chr3_3:69529220-69529239 None:intergenic 45.0%
CCTGCAGAGTAACATGTCAA+GGG - chr3_3:69529835-69529854 None:intergenic 45.0%
ACCTGCAGAGTAACATGTCA+AGG - chr3_3:69529836-69529855 None:intergenic 45.0%
TTGACATGTTACTCTGCAGG+TGG + chr3_3:69529835-69529854 Msa0468020:intron 45.0%
!! CACAGAAGTTGATGAATCCC+CGG - chr3_3:69530206-69530225 None:intergenic 45.0%
AAGAATAACCAGGCATCCAC+AGG + chr3_3:69530334-69530353 Msa0468020:CDS 45.0%
GATTAATACCTGTGGATGCC+TGG - chr3_3:69530345-69530364 None:intergenic 45.0%
! AGATGGTTGGTCAGGTAATC+TGG + chr3_3:69530733-69530752 Msa0468020:intron 45.0%
! TTGGTGCTTGGAATGGAGAT+AGG + chr3_3:69530832-69530851 Msa0468020:CDS 45.0%
! AGGCGATTAGCTCAAAGACA+TGG + chr3_3:69530852-69530871 Msa0468020:CDS 45.0%
CCATCAAGGATTGCTGCAAA+AGG - chr3_3:69530918-69530937 None:intergenic 45.0%
! CCTTTTGCAGCAATCCTTGA+TGG + chr3_3:69530915-69530934 Msa0468020:CDS 45.0%
GTAATCTTTGACGGCCATCA+AGG - chr3_3:69530932-69530951 None:intergenic 45.0%
AACTCCTTGTAGAAATCCGC+AGG - chr3_3:69530954-69530973 None:intergenic 45.0%
AACTAGCAGCCTGCATAAGA+GGG - chr3_3:69531034-69531053 None:intergenic 45.0%
AAACTAGCAGCCTGCATAAG+AGG - chr3_3:69531035-69531054 None:intergenic 45.0%
! CTGCTAGTTTCAACCTCCAT+TGG + chr3_3:69531045-69531064 Msa0468020:CDS 45.0%
TTTCAACCTCCATTGGTAGG+TGG + chr3_3:69531052-69531071 Msa0468020:exon 45.0%
CATCAATAGACAGGGTCACA+GGG + chr3_3:69531151-69531170 Msa0468020:three_prime_UTR 45.0%
! GCAAGACAGATCCTTGTTTC+TGG - chr3_3:69531279-69531298 None:intergenic 45.0%
TGGTGACTAGAAGTTGTGGG+TGG + chr3_3:69528857-69528876 Msa0468020:five_prime_UTR 50.0%
GGAAAAAGACTCGAGCTTCG+TGG + chr3_3:69529134-69529153 Msa0468020:CDS 50.0%
!! TTTCGCCGCAATTTTGGGTG+TGG + chr3_3:69529212-69529231 Msa0468020:CDS 50.0%
CCCTTGACATGTTACTCTGC+AGG + chr3_3:69529832-69529851 Msa0468020:intron 50.0%
!! ATGGCTAGCCTACGGAATAC+TGG + chr3_3:69529902-69529921 Msa0468020:CDS 50.0%
CGGGGATTCATCAACTTCTG+TGG + chr3_3:69530204-69530223 Msa0468020:CDS 50.0%
! TGCTGTTCAGATGGTTGGTC+AGG + chr3_3:69530725-69530744 Msa0468020:intron 50.0%
GTGGCTGTTGCAGCTTCAAT+TGG + chr3_3:69530789-69530808 Msa0468020:CDS 50.0%
TGGCCGTCAAAGATTACCTG+CGG + chr3_3:69530935-69530954 Msa0468020:CDS 50.0%
CTTTGCACACCCTCTTATGC+AGG + chr3_3:69531022-69531041 Msa0468020:CDS 50.0%
ACCTCCATTGGTAGGTGGAA+AGG + chr3_3:69531057-69531076 Msa0468020:exon 50.0%
TCCTTTCCACCTACCAATGG+AGG - chr3_3:69531061-69531080 None:intergenic 50.0%
TTGATGCACACTACAGCACG+TGG - chr3_3:69531137-69531156 None:intergenic 50.0%
GCATCAATAGACAGGGTCAC+AGG + chr3_3:69531150-69531169 Msa0468020:three_prime_UTR 50.0%
! TGCGGTTTTCCACAGTGGCA+TGG + chr3_3:69529883-69529902 Msa0468020:CDS 55.0%
!! ACAGTGGCATGGCTAGCCTA+CGG + chr3_3:69529894-69529913 Msa0468020:CDS 55.0%
! GATGAATCCCCGGAGTACTC+TGG - chr3_3:69530196-69530215 None:intergenic 55.0%
AGGGCTCTCCGATTCTCACG+AGG + chr3_3:69529308-69529327 Msa0468020:CDS 60.0%
! GTAGGCTAGCCATGCCACTG+TGG - chr3_3:69529895-69529914 None:intergenic 60.0%
! CTGGCAGCTCCAGAGTACTC+CGG + chr3_3:69530184-69530203 Msa0468020:CDS 60.0%
! TGGCAGCTCCAGAGTACTCC+GGG + chr3_3:69530185-69530204 Msa0468020:CDS 60.0%
! GGCAGCTCCAGAGTACTCCG+GGG + chr3_3:69530186-69530205 Msa0468020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69528822 69531325 69528822 ID=Msa0468020;Name=Msa0468020
chr3_3 mRNA 69528822 69531325 69528822 ID=Msa0468020-mRNA-1;Parent=Msa0468020;Name=Msa0468020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=115|1|1|1|1|1|4|255|361
chr3_3 exon 69528822 69529329 69528822 ID=Msa0468020-mRNA-1:exon:16467;Parent=Msa0468020-mRNA-1
chr3_3 exon 69529854 69530000 69529854 ID=Msa0468020-mRNA-1:exon:16468;Parent=Msa0468020-mRNA-1
chr3_3 exon 69530146 69530355 69530146 ID=Msa0468020-mRNA-1:exon:16469;Parent=Msa0468020-mRNA-1
chr3_3 exon 69530735 69531325 69530735 ID=Msa0468020-mRNA-1:exon:16470;Parent=Msa0468020-mRNA-1
chr3_3 five_prime_UTR 69528822 69528936 69528822 ID=Msa0468020-mRNA-1:five_prime_utr;Parent=Msa0468020-mRNA-1
chr3_3 CDS 69528937 69529329 69528937 ID=Msa0468020-mRNA-1:cds;Parent=Msa0468020-mRNA-1
chr3_3 CDS 69529854 69530000 69529854 ID=Msa0468020-mRNA-1:cds;Parent=Msa0468020-mRNA-1
chr3_3 CDS 69530146 69530355 69530146 ID=Msa0468020-mRNA-1:cds;Parent=Msa0468020-mRNA-1
chr3_3 CDS 69530735 69531070 69530735 ID=Msa0468020-mRNA-1:cds;Parent=Msa0468020-mRNA-1
chr3_3 three_prime_UTR 69531071 69531325 69531071 ID=Msa0468020-mRNA-1:three_prime_utr;Parent=Msa0468020-mRNA-1
Gene Sequence

>Msa0468020

ATGGCTGCCTCTCTTATACTCTCTGCTTCTTTCTCTCCAACCCATCACCCATCATTGTTCTCTCCCTCTTATTCCATTTCATATTCCAAACCAAAACCTACTTCTCAACGCTCCTCATACTTCTCATCTCCAAATTCAAAACCACTATCTCTCTCTCACAGGTTCAACTTCAGGCTCATTACCCATTCTTCAATAAAGGAAAAAGACTCGAGCTTCGTGGGAGAAGACTCCGCAGCTTTTAGTTTAACGGAACAGAAAATAACTTCATGGATTTATTTCGCCGCAATTTTGGGTGTGGTTCTCTTCATTCTAAATGTGGTATGGATTGATAACTCAACTGGCTTTGGTAAAGCTTTTGTTGATGCTGTTTCAGGGCTCTCCGATTCTCACGAGGTGGTAATGTTGATCCTAATTCTCATATTTGCGGTTTTCCACAGTGGCATGGCTAGCCTACGGAATACTGGTGAGAAAATCATTGGTGAAAGAGCTTTTCGGGTTATTTTTGCAGGGATATCACTACCTTTAGCTGTCACTACTATTGTGTATTTTATTAATCACAGATATGATGGAATTCAACTCTGGCAGCTCCAGAGTACTCCGGGGATTCATCAACTTCTGTGGCTTTCCAATTTCATCTCTTTCTTTTTCCTATATCCTTCAACCTTTAATCTTTTAGAAATTGCAGCAGTTGACAAGCCTAAAATACATCTATATGAAACTGGCATCATAAGAATAACCAGGCATCCACAGATGGTTGGTCAGGTAATCTGGTGTCTTGCTCATACAATTTGGATTGGGAATTCTGTGGCTGTTGCAGCTTCAATTGGCTTAATTTCACATCATCTATTTGGTGCTTGGAATGGAGATAGGCGATTAGCTCAAAGACATGGAGAAGATTTTGAGATAGTTAAGCGTCGAACAAGTATTGTCCCTTTTGCAGCAATCCTTGATGGCCGTCAAAGATTACCTGCGGATTTCTACAAGGAGTTTATTAGATTACCATACTTAGTAATTACTGCATTAACACTAGGAGCTTACTTTGCACACCCTCTTATGCAGGCTGCTAGTTTCAACCTCCATTGGTAG

Protein sequence

>Msa0468020

MAASLILSASFSPTHHPSLFSPSYSISYSKPKPTSQRSSYFSSPNSKPLSLSHRFNFRLITHSSIKEKDSSFVGEDSAAFSLTEQKITSWIYFAAILGVVLFILNVVWIDNSTGFGKAFVDAVSGLSDSHEVVMLILILIFAVFHSGMASLRNTGEKIIGERAFRVIFAGISLPLAVTTIVYFINHRYDGIQLWQLQSTPGIHQLLWLSNFISFFFLYPSTFNLLEIAAVDKPKIHLYETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLISHHLFGAWNGDRRLAQRHGEDFEIVKRRTSIVPFAAILDGRQRLPADFYKEFIRLPYLVITALTLGAYFAHPLMQAASFNLHW*