Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429590 | XP_013462007.1 | 85.388 | 438 | 28 | 2 | 17 | 454 | 37 | 438 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429590 | sp|Q9SXC4|IRX9H_ARATH | 40.657 | 396 | 175 | 7 | 53 | 448 | 55 | 390 | 1.09e-99 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429590 | G7ZWJ7 | 85.388 | 438 | 28 | 2 | 17 | 454 | 37 | 438 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa1429590 | 0.817618 | 3.003971e-52 | -8.615850e-47 |
| Msa0078130 | Msa1429590 | 0.800280 | 1.552323e-48 | -8.615850e-47 |
| Msa0100890 | Msa1429590 | 0.813630 | 2.322170e-51 | -8.615850e-47 |
| Msa0109730 | Msa1429590 | 0.822310 | 2.535939e-53 | -8.615850e-47 |
| Msa1389820 | Msa1429590 | 0.813963 | 1.961497e-51 | -8.615850e-47 |
| Msa1390210 | Msa1429590 | 0.825924 | 3.594200e-54 | -8.615850e-47 |
| Msa0663290 | Msa1429590 | 0.811867 | 5.646934e-51 | -8.615850e-47 |
| Msa0664070 | Msa1429590 | 0.806649 | 7.423390e-50 | -8.615850e-47 |
| Msa0690320 | Msa1429590 | 0.801123 | 1.044473e-48 | -8.615850e-47 |
| Msa0156050 | Msa1429590 | 0.800592 | 1.340844e-48 | -8.615850e-47 |
| Msa0156090 | Msa1429590 | 0.806452 | 8.170765e-50 | -8.615850e-47 |
| Msa0184700 | Msa1429590 | 0.802335 | 5.889683e-49 | -8.615850e-47 |
| Msa0225800 | Msa1429590 | 0.811287 | 7.549479e-51 | -8.615850e-47 |
| Msa1297070 | Msa1429590 | 0.814504 | 1.489658e-51 | -8.615850e-47 |
| Msa1328870 | Msa1429590 | 0.808691 | 2.734948e-50 | -8.615850e-47 |
| Msa0373170 | Msa1429590 | 0.804820 | 1.798167e-49 | -8.615850e-47 |
| Msa0387130 | Msa1429590 | 0.898861 | 3.501762e-77 | -8.615850e-47 |
| Msa0415820 | Msa1429590 | 0.804674 | 1.928770e-49 | -8.615850e-47 |
| Msa0421750 | Msa1429590 | 0.801228 | 9.943315e-49 | -8.615850e-47 |
| Msa0467690 | Msa1429590 | 0.803187 | 3.928536e-49 | -8.615850e-47 |
| Msa1008850 | Msa1429590 | 0.809806 | 1.576848e-50 | -8.615850e-47 |
| Msa0260570 | Msa1429590 | 0.800263 | 1.564293e-48 | -8.615850e-47 |
| Msa0260630 | Msa1429590 | 0.836467 | 9.200064e-57 | -8.615850e-47 |
| Msa0342220 | Msa1429590 | 0.806509 | 7.948941e-50 | -8.615850e-47 |
| Msa0344110 | Msa1429590 | 0.804730 | 1.877057e-49 | -8.615850e-47 |
| Msa1138800 | Msa1429590 | 0.806617 | 7.538923e-50 | -8.615850e-47 |
| Msa1144990 | Msa1429590 | 0.802560 | 5.294212e-49 | -8.615850e-47 |
| Msa1206040 | Msa1429590 | 0.815466 | 9.112717e-52 | -8.615850e-47 |
| Msa0506880 | Msa1429590 | 0.806712 | 7.198796e-50 | -8.615850e-47 |
| Msa0514020 | Msa1429590 | 0.804679 | 1.924291e-49 | -8.615850e-47 |
| Msa0527850 | Msa1429590 | 0.816291 | 5.964520e-52 | -8.615850e-47 |
| Msa0544410 | Msa1429590 | 0.802201 | 6.277764e-49 | -8.615850e-47 |
| Msa0554300 | Msa1429590 | 0.801642 | 8.179065e-49 | -8.615850e-47 |
| Msa0572830 | Msa1429590 | 0.804397 | 2.203140e-49 | -8.615850e-47 |
| Msa0582460 | Msa1429590 | 0.818267 | 2.142552e-52 | -8.615850e-47 |
| Msa0586200 | Msa1429590 | 0.823155 | 1.612675e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429590 | MtrunA17_Chr3g0140001 | 85.388 | 438 | 28 | 2 | 17 | 454 | 37 | 438 | 0.0 | 753 |
| Msa1429590 | MtrunA17_Chr3g0140951 | 38.430 | 484 | 203 | 11 | 8 | 448 | 6 | 437 | 4.98e-103 | 314 |
| Msa1429590 | MtrunA17_Chr7g0263751 | 31.783 | 387 | 194 | 10 | 51 | 428 | 4 | 329 | 3.12e-58 | 194 |
| Msa1429590 | MtrunA17_Chr5g0401811 | 30.233 | 215 | 112 | 6 | 162 | 340 | 147 | 359 | 4.56e-21 | 95.9 |
| Msa1429590 | MtrunA17_Chr4g0053291 | 27.619 | 210 | 120 | 6 | 162 | 340 | 152 | 360 | 4.97e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429590 | AT1G27600.2 | 40.657 | 396 | 175 | 7 | 53 | 448 | 55 | 390 | 1.11e-100 | 306 |
| Msa1429590 | AT1G27600.1 | 40.657 | 396 | 175 | 7 | 53 | 448 | 55 | 390 | 1.11e-100 | 306 |
| Msa1429590 | AT2G37090.1 | 30.649 | 385 | 221 | 6 | 48 | 428 | 1 | 343 | 2.02e-63 | 209 |
| Msa1429590 | AT5G67230.1 | 27.864 | 323 | 162 | 10 | 162 | 447 | 148 | 436 | 3.33e-27 | 114 |
| Msa1429590 | AT4G36890.1 | 26.911 | 327 | 162 | 10 | 162 | 447 | 156 | 446 | 2.11e-23 | 103 |
Find 171 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAACTTAACTTGCTATAT+TGG | 0.211815 | tig0026532:+34549 | Msa1429590:five_prime_UTR |
| ATTCAGTGATGAATCATATT+TGG | 0.212343 | tig0026532:+35383 | Msa1429590:CDS |
| TTGCCATACTTGTGCTCATT+TGG | 0.232847 | tig0026532:+34653 | Msa1429590:five_prime_UTR |
| TGCCATACTTGTGCTCATTT+GGG | 0.253629 | tig0026532:+34654 | Msa1429590:five_prime_UTR |
| GACGGTCGGTGCCGCTTCTT+TGG | 0.259496 | tig0026532:-36068 | None:intergenic |
| CATCGGATGGCATAGACTTC+TGG | 0.266735 | tig0026532:-34966 | None:intergenic |
| GTTACTGAACATTATTGATT+TGG | 0.278452 | tig0026532:+34821 | Msa1429590:five_prime_UTR |
| ACTCTGCTTCGCTGTCATTT+AGG | 0.295834 | tig0026532:+34500 | Msa1429590:five_prime_UTR |
| CTTGTCACAAACTTTGAAAT+TGG | 0.298785 | tig0026532:+35476 | Msa1429590:CDS |
| CATTATTGAGCAAGGAGTTT+CGG | 0.309710 | tig0026532:-34578 | None:intergenic |
| TCAATATTCCACAAAGATCT+TGG | 0.315694 | tig0026532:-35051 | None:intergenic |
| CCTTCAACAGTACGATACTA+TGG | 0.319421 | tig0026532:+36042 | Msa1429590:CDS |
| TTTAAATGAAAATGATGAAT+AGG | 0.329672 | tig0026532:-37418 | None:intergenic |
| TTCATGGTTGGTGTTTCTAT+TGG | 0.332880 | tig0026532:+35132 | Msa1429590:CDS |
| ATTATTGAGCAAGGAGTTTC+GGG | 0.342793 | tig0026532:-34577 | None:intergenic |
| TGTCTACCTGGGACCTCATT+TGG | 0.344958 | tig0026532:+34788 | Msa1429590:five_prime_UTR |
| CTCAAATGGCTACGCCTATT+CGG | 0.352822 | tig0026532:+37129 | Msa1429590:three_prime_UTR |
| CACTTCACTTCCATTACAAA+TGG | 0.360558 | tig0026532:-35949 | None:intergenic |
| CCATATGAAATGAGGGGAAC+TGG | 0.366917 | tig0026532:-34419 | None:intergenic |
| CAAGGAAGATTATAAAGAAT+TGG | 0.368822 | tig0026532:+37067 | Msa1429590:three_prime_UTR |
| CCAGTTCCCCTCATTTCATA+TGG | 0.371657 | tig0026532:+34419 | Msa1429590:five_prime_UTR |
| TTCAGCAAATGAGAGAAATA+AGG | 0.372244 | tig0026532:+35736 | Msa1429590:CDS |
| ATCGGATGGCATAGACTTCT+GGG | 0.372385 | tig0026532:-34965 | None:intergenic |
| GGAGATTGAGATTCGGGATT+CGG | 0.374596 | tig0026532:-34397 | None:intergenic |
| GAGTATTAACTAGGAGGTTC+CGG | 0.381572 | tig0026532:-34735 | None:intergenic |
| TTTGGATTTATTTCTATGAA+TGG | 0.385928 | tig0026532:+34839 | Msa1429590:five_prime_UTR |
| GCAGTTGTGGCTCGAGGAAC+CGG | 0.387864 | tig0026532:-34885 | None:intergenic |
| GAACTGGGAGATTGAGATTC+GGG | 0.389150 | tig0026532:-34403 | None:intergenic |
| ACCCCAAATGAGCACAAGTA+TGG | 0.389244 | tig0026532:-34656 | None:intergenic |
| AATATGATTCATCACTGAAT+TGG | 0.391631 | tig0026532:-35380 | None:intergenic |
| ATTTCTTGACATGAGATTCA+AGG | 0.399068 | tig0026532:-35184 | None:intergenic |
| AGAACAACCTAGACATCATT+TGG | 0.399388 | tig0026532:+36540 | Msa1429590:CDS |
| GACCGTCTCATGAACCTATC+AGG | 0.403510 | tig0026532:+36084 | Msa1429590:CDS |
| AACATTTGTCCTTTGCGGTC+GGG | 0.409180 | tig0026532:+36244 | Msa1429590:CDS |
| CCATAGTATCGTACTGTTGA+AGG | 0.411039 | tig0026532:-36042 | None:intergenic |
| TTCTCATAAGAAGGCTCCTA+TGG | 0.412216 | tig0026532:-35626 | None:intergenic |
| GTTAGTTTCTAGTTTGTATC+CGG | 0.412425 | tig0026532:+34716 | Msa1429590:five_prime_UTR |
| TTTATTATCATCTTCTCAAA+TGG | 0.414672 | tig0026532:+37115 | Msa1429590:three_prime_UTR |
| CTCTCGAGCAGTCGTTCATT+AGG | 0.418918 | tig0026532:-36454 | None:intergenic |
| GAGGTCCCAGGTAGACAGTT+TGG | 0.420025 | tig0026532:-34782 | None:intergenic |
| TTCTACATACTCTCATGTTA+TGG | 0.424636 | tig0026532:+36272 | Msa1429590:CDS |
| CTTGTGCTCATTTGGGGTGA+AGG | 0.424938 | tig0026532:+34661 | Msa1429590:five_prime_UTR |
| TTTCTCCAAAGCTGACCCTT+AGG | 0.431161 | tig0026532:-35084 | None:intergenic |
| ACCTTCTTCATTCACCTCAC+TGG | 0.433976 | tig0026532:+34996 | Msa1429590:CDS |
| CACCAACCAAACTGTCTACC+TGG | 0.441773 | tig0026532:+34776 | Msa1429590:five_prime_UTR |
| ACTGCTCGAGAGTTATGGTT+TGG | 0.441983 | tig0026532:+36465 | Msa1429590:CDS |
| AATCTCATGTCAAGAAATCA+AGG | 0.442989 | tig0026532:+35189 | Msa1429590:CDS |
| ACTGATTCGAGCTGCCTGAT+AGG | 0.446665 | tig0026532:-36098 | None:intergenic |
| TGGTCTCCCCTCCTTTGTTG+TGG | 0.448208 | tig0026532:+35496 | Msa1429590:CDS |
| TTGCAAGATTTCTCATAAGA+AGG | 0.449145 | tig0026532:-35635 | None:intergenic |
| TATGTAACATTTGTCCTTTG+CGG | 0.449208 | tig0026532:+36239 | Msa1429590:CDS |
| TTGCAAGGGCCCATTTGTAA+TGG | 0.449650 | tig0026532:+35939 | Msa1429590:CDS |
| CAATATAGCAAGTTAAGTTA+AGG | 0.450708 | tig0026532:-34548 | None:intergenic |
| AAGTATATGATAGGACCAAC+TGG | 0.450935 | tig0026532:-37297 | None:intergenic |
| CAAAACCTAAGGGTCAGCTT+TGG | 0.452259 | tig0026532:+35079 | Msa1429590:CDS |
| GAACGACTGCTCGAGAGTTA+TGG | 0.454061 | tig0026532:+36460 | Msa1429590:CDS |
| CAATATTCCACAAAGATCTT+GGG | 0.454521 | tig0026532:-35050 | None:intergenic |
| ATGTTATGGCTATCCTCTCC+TGG | 0.458004 | tig0026532:+36286 | Msa1429590:CDS |
| TCAGGCAGCTCGAATCAGTC+AGG | 0.459366 | tig0026532:+36102 | Msa1429590:CDS |
| AATCAGATGGGAATTCTAAA+CGG | 0.469390 | tig0026532:+35994 | Msa1429590:CDS |
| GGAACTGGGAGATTGAGATT+CGG | 0.470696 | tig0026532:-34404 | None:intergenic |
| ATCAGTCAGGGAAAATTTGT+GGG | 0.473922 | tig0026532:+36115 | Msa1429590:CDS |
| ATCTACATTTCCTGCAGTTG+TGG | 0.474203 | tig0026532:-34898 | None:intergenic |
| AATCAGTCAGGGAAAATTTG+TGG | 0.485510 | tig0026532:+36114 | Msa1429590:CDS |
| TAACATTTGTCCTTTGCGGT+CGG | 0.493337 | tig0026532:+36243 | Msa1429590:CDS |
| CAAGTCACTGTGATGGCGAA+TGG | 0.495951 | tig0026532:-37157 | None:intergenic |
| CATGAGATTCAAGGACAAGT+TGG | 0.496224 | tig0026532:-35175 | None:intergenic |
| GTACCACTTGGTCGCAAAGT+TGG | 0.497357 | tig0026532:+34460 | Msa1429590:five_prime_UTR |
| TTGGATAGTCAAATGTTGCT+TGG | 0.502644 | tig0026532:+34689 | Msa1429590:five_prime_UTR |
| TATTGAGAAATCAAAACCTA+AGG | 0.503406 | tig0026532:+35068 | Msa1429590:CDS |
| ATTGAAACTCATCGCCTCAA+TGG | 0.503520 | tig0026532:+35666 | Msa1429590:CDS |
| TAAGGGTCAGCTTTGGAGAA+AGG | 0.503938 | tig0026532:+35086 | Msa1429590:CDS |
| TAGGAGAGGACTTAGATAAC+GGG | 0.506171 | tig0026532:-34938 | None:intergenic |
| TAAAATGCACTATTAATCAA+TGG | 0.509593 | tig0026532:-37199 | None:intergenic |
| TGTTGAAGATGAAAGTGAAA+TGG | 0.510015 | tig0026532:+36427 | Msa1429590:CDS |
| TGAAATTCTTCATAAAGAAG+CGG | 0.510654 | tig0026532:+36578 | Msa1429590:exon |
| GATTCGGGATTCGGTGTGGT+TGG | 0.510981 | tig0026532:-34388 | None:intergenic |
| CTATTAATCAATGGACTCGT+AGG | 0.511873 | tig0026532:-37190 | None:intergenic |
| AGATGTTTCAGTTGTCCAGT+TGG | 0.512084 | tig0026532:+37282 | Msa1429590:three_prime_UTR |
| CTTCTATGTTCAGTACCACT+TGG | 0.517311 | tig0026532:+34448 | Msa1429590:five_prime_UTR |
| CACACAAATAATGAATCAGA+TGG | 0.517915 | tig0026532:+35981 | Msa1429590:CDS |
| GTCAGGGAAAATTTGTGGGT+TGG | 0.518165 | tig0026532:+36119 | Msa1429590:CDS |
| TGTAATGGAAGTGAAGTGAT+TGG | 0.518298 | tig0026532:+35954 | Msa1429590:CDS |
| AAGTCACTGTGATGGCGAAT+GGG | 0.519115 | tig0026532:-37156 | None:intergenic |
| GAAGATTCCAAATGATGTCT+AGG | 0.519367 | tig0026532:-36547 | None:intergenic |
| ACTTCACTTCCATTACAAAT+GGG | 0.520026 | tig0026532:-35948 | None:intergenic |
| GCCATACTTGTGCTCATTTG+GGG | 0.528255 | tig0026532:+34655 | Msa1429590:five_prime_UTR |
| AAAACTAAAATCCTCGGAGG+GGG | 0.528688 | tig0026532:-34331 | None:intergenic |
| TGAAATAGATGATTGTAAGT+TGG | 0.528715 | tig0026532:-35435 | None:intergenic |
| ACAAGTTGGTTGATGCGAGC+GGG | 0.531037 | tig0026532:-35161 | None:intergenic |
| GTTCCTCGAGCCACAACTGC+AGG | 0.532105 | tig0026532:+34888 | Msa1429590:five_prime_UTR |
| TTTGCAGGCGATTTGGAACA+TGG | 0.535751 | tig0026532:+35877 | Msa1429590:intron |
| TTGAAAGATCAGAAGGAACC+TGG | 0.536645 | tig0026532:-37254 | None:intergenic |
| GAAATTCTTCATAAAGAAGC+GGG | 0.537132 | tig0026532:+36579 | Msa1429590:exon |
| TGGTTGATGCGAGCGGGATG+AGG | 0.537179 | tig0026532:-35155 | None:intergenic |
| TCCAGTGAGGTGAATGAAGA+AGG | 0.541411 | tig0026532:-34997 | None:intergenic |
| CAGTTTGGTTGGTGAGCTGA+AGG | 0.541508 | tig0026532:-34767 | None:intergenic |
| GGCGAATGGGATATCCGAAT+AGG | 0.542334 | tig0026532:-37143 | None:intergenic |
| CGGTTTCATGCTGAAATGCA+AGG | 0.542684 | tig0026532:+36014 | Msa1429590:CDS |
| GACAGTGCCATATGAAATGA+GGG | 0.547217 | tig0026532:-34426 | None:intergenic |
| TAGAGATCTAATCTAAAAGG+AGG | 0.550195 | tig0026532:-34361 | None:intergenic |
| CATATGAAATGAGGGGAACT+GGG | 0.550585 | tig0026532:-34418 | None:intergenic |
| AACTTCAAAACTAAAATCCT+CGG | 0.551880 | tig0026532:-34337 | None:intergenic |
| CGGATGGCATAGACTTCTGG+GGG | 0.552173 | tig0026532:-34963 | None:intergenic |
| AGACAGTGCCATATGAAATG+AGG | 0.554099 | tig0026532:-34427 | None:intergenic |
| AATTAGAAGAACCTTGTCTC+CGG | 0.554613 | tig0026532:+34866 | Msa1429590:five_prime_UTR |
| TGGATATTCATTATTGAGCA+AGG | 0.555310 | tig0026532:-34586 | None:intergenic |
| CAAAACTAAAATCCTCGGAG+GGG | 0.557307 | tig0026532:-34332 | None:intergenic |
| GTTAAGTTAAGGATGAAAAG+TGG | 0.558396 | tig0026532:-34537 | None:intergenic |
| CTGCCTCTTGAAAGATCAGA+AGG | 0.561868 | tig0026532:-37261 | None:intergenic |
| GACAAGTTGGTTGATGCGAG+CGG | 0.562480 | tig0026532:-35162 | None:intergenic |
| TCCCAGGTAGACAGTTTGGT+TGG | 0.564323 | tig0026532:-34778 | None:intergenic |
| CAAAATAAACAATTCCATTG+AGG | 0.568694 | tig0026532:-35680 | None:intergenic |
| TCAAAACTAAAATCCTCGGA+GGG | 0.568846 | tig0026532:-34333 | None:intergenic |
| AAGGCTCCTATGGCTTGTGT+TGG | 0.570767 | tig0026532:-35616 | None:intergenic |
| GACTGTTGCAAGATTATCAA+AGG | 0.571178 | tig0026532:+35899 | Msa1429590:CDS |
| AACTTACTTAACTCCAAATG+AGG | 0.573417 | tig0026532:-34801 | None:intergenic |
| CAACAATCCACAACAAAGGA+GGG | 0.577571 | tig0026532:-35503 | None:intergenic |
| AGAAGCGGCATTCTCTTGCA+AGG | 0.579793 | tig0026532:+35924 | Msa1429590:CDS |
| GTAGGAGAGGACTTAGATAA+CGG | 0.580559 | tig0026532:-34939 | None:intergenic |
| GGCTCGAGGAACCGGAGACA+AGG | 0.587801 | tig0026532:-34877 | None:intergenic |
| CTTCAACAGTACGATACTAT+GGG | 0.589294 | tig0026532:+36043 | Msa1429590:CDS |
| ATTGAGAAATCAAAACCTAA+GGG | 0.590510 | tig0026532:+35069 | Msa1429590:CDS |
| CAGAAGTCTATGCCATCCGA+TGG | 0.591401 | tig0026532:+34967 | Msa1429590:CDS |
| ACACAAATAATGAATCAGAT+GGG | 0.594005 | tig0026532:+35982 | Msa1429590:CDS |
| TTGTTTCGCTCAACCAGGAG+AGG | 0.595868 | tig0026532:-36299 | None:intergenic |
| TTTCCTGCAGTTGTGGCTCG+AGG | 0.597173 | tig0026532:-34891 | None:intergenic |
| GCATTCTGTTATGCACTGCA+AGG | 0.597902 | tig0026532:+37049 | Msa1429590:intron |
| TGAGACACCGTTAGTTGATG+AGG | 0.599843 | tig0026532:+35275 | Msa1429590:CDS |
| GTTCCTTCTGATCTTTCAAG+AGG | 0.600989 | tig0026532:+37258 | Msa1429590:three_prime_UTR |
| TTAACTCCAAATGAGGTCCC+AGG | 0.602794 | tig0026532:-34794 | None:intergenic |
| TATTAATCAATGGACTCGTA+GGG | 0.602849 | tig0026532:-37189 | None:intergenic |
| AACAATCCACAACAAAGGAG+GGG | 0.603273 | tig0026532:-35502 | None:intergenic |
| TATGAAGAATTTCACACAAG+GGG | 0.607294 | tig0026532:-36569 | None:intergenic |
| ACAACAATCCACAACAAAGG+AGG | 0.607664 | tig0026532:-35504 | None:intergenic |
| ACAACGAAAGAGTATTAACT+AGG | 0.607999 | tig0026532:-34744 | None:intergenic |
| TGAAGAAGGTAACAATCCAT+CGG | 0.609035 | tig0026532:-34983 | None:intergenic |
| AATCAATGGACTCGTAGGGA+TGG | 0.615238 | tig0026532:-37185 | None:intergenic |
| GAAGGTAACAATCCATCGGA+TGG | 0.617846 | tig0026532:-34979 | None:intergenic |
| GTTCCAACTTTGCGACCAAG+TGG | 0.626421 | tig0026532:-34463 | None:intergenic |
| CAAGAACAAGAACTAACAGA+TGG | 0.626873 | tig0026532:+35333 | Msa1429590:CDS |
| TACTATGGGATCCAAAGAAG+CGG | 0.628826 | tig0026532:+36057 | Msa1429590:CDS |
| GAAGCGGCATTCTCTTGCAA+GGG | 0.630624 | tig0026532:+35925 | Msa1429590:CDS |
| ACCAACCAAACTGTCTACCT+GGG | 0.630858 | tig0026532:+34777 | Msa1429590:five_prime_UTR |
| TTCACAGCCTCATCAACTAA+CGG | 0.631940 | tig0026532:-35282 | None:intergenic |
| TGATAGGTTCATGAGACGGT+CGG | 0.632869 | tig0026532:-36082 | None:intergenic |
| TTGAGATTCGGGATTCGGTG+TGG | 0.633944 | tig0026532:-34392 | None:intergenic |
| TTCAAAACTAAAATCCTCGG+AGG | 0.635767 | tig0026532:-34334 | None:intergenic |
| GGTATCGCAAGTCACTGTGA+TGG | 0.642085 | tig0026532:-37164 | None:intergenic |
| ATGACAGCGAAGCAGAGTGG+AGG | 0.642192 | tig0026532:-34495 | None:intergenic |
| AGATTATCAAAGGATAGAAG+CGG | 0.648323 | tig0026532:+35909 | Msa1429590:CDS |
| AAACTAAAATCCTCGGAGGG+GGG | 0.650577 | tig0026532:-34330 | None:intergenic |
| ATGGAAGTGAAGTGATTGGA+TGG | 0.650614 | tig0026532:+35958 | Msa1429590:CDS |
| AGAACATCACCCGACCGCAA+AGG | 0.650955 | tig0026532:-36253 | None:intergenic |
| CAGGCAGCTCGAATCAGTCA+GGG | 0.651988 | tig0026532:+36103 | Msa1429590:CDS |
| TGCCTGATAGGTTCATGAGA+CGG | 0.656114 | tig0026532:-36086 | None:intergenic |
| ACGAAAGAGTATTAACTAGG+AGG | 0.661681 | tig0026532:-34741 | None:intergenic |
| TTATGAAGAATTTCACACAA+GGG | 0.661763 | tig0026532:-36570 | None:intergenic |
| TCAACAACAATCCACAACAA+AGG | 0.663654 | tig0026532:-35507 | None:intergenic |
| TGAAGATGAAAGTGAAATGG+AGG | 0.667770 | tig0026532:+36430 | Msa1429590:CDS |
| ATGAGCACAAGTATGGCAAG+TGG | 0.674202 | tig0026532:-34649 | None:intergenic |
| TTTATGAAGAATTTCACACA+AGG | 0.675371 | tig0026532:-36571 | None:intergenic |
| ATCTAACCAACACAAGCCAT+AGG | 0.684632 | tig0026532:+35610 | Msa1429590:CDS |
| TAAATGACAGCGAAGCAGAG+TGG | 0.687573 | tig0026532:-34498 | None:intergenic |
| TCGGATGGCATAGACTTCTG+GGG | 0.700621 | tig0026532:-34964 | None:intergenic |
| AAAAGCACTGGAGTCCAGTG+AGG | 0.702864 | tig0026532:-35010 | None:intergenic |
| GATGGCATAGACTTCTGGGG+GGG | 0.709627 | tig0026532:-34961 | None:intergenic |
| GAAGATGAAAGTGAAATGGA+GGG | 0.738783 | tig0026532:+36431 | Msa1429590:CDS |
| AGGAGAGGACTTAGATAACG+GGG | 0.743514 | tig0026532:-34937 | None:intergenic |
| ACAGTGCCATATGAAATGAG+GGG | 0.766107 | tig0026532:-34425 | None:intergenic |
| GGATGGCATAGACTTCTGGG+GGG | 0.769546 | tig0026532:-34962 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATAGTTAAAATTAAAA+AGG | + | tig0026532:36820-36839 | Msa1429590:intron | 10.0% |
| !! | ATCATAGTTAAAATTAAAAA+GGG | + | tig0026532:36821-36840 | Msa1429590:intron | 10.0% |
| !! | TATCTTAAAATAACTTAAAA+TGG | - | tig0026532:36895-36914 | None:intergenic | 10.0% |
| !! | TTTAAATCAAAAGTTAAAAA+AGG | - | tig0026532:37021-37040 | None:intergenic | 10.0% |
| !! | AATTGAATGTTAAGAATTAT+AGG | + | tig0026532:36671-36690 | Msa1429590:intron | 15.0% |
| !! | TTTAAATGAAAATGATGAAT+AGG | - | tig0026532:37421-37440 | None:intergenic | 15.0% |
| !!! | TTTTAGAGATCTAATCTAAA+AGG | - | tig0026532:34367-34386 | None:intergenic | 20.0% |
| !!! | TTTGGATTTATTTCTATGAA+TGG | + | tig0026532:34839-34858 | Msa1429590:five_prime_UTR | 20.0% |
| !! | ACATTCAATTCAATTATAGA+AGG | - | tig0026532:36661-36680 | None:intergenic | 20.0% |
| !! | ATGTTAAGAATTATAGGTTT+AGG | + | tig0026532:36677-36696 | Msa1429590:intron | 20.0% |
| !! | TATGATTAAGAGTTTAGTAT+TGG | - | tig0026532:36807-36826 | None:intergenic | 20.0% |
| !! | TTTATTATCATCTTCTCAAA+TGG | + | tig0026532:37115-37134 | Msa1429590:three_prime_UTR | 20.0% |
| !! | TAAAATGCACTATTAATCAA+TGG | - | tig0026532:37202-37221 | None:intergenic | 20.0% |
| !!! | ACAAACAAAAAGTATATGAT+AGG | - | tig0026532:37309-37328 | None:intergenic | 20.0% |
| ! | AACTTCAAAACTAAAATCCT+CGG | - | tig0026532:34340-34359 | None:intergenic | 25.0% |
| ! | CAATATAGCAAGTTAAGTTA+AGG | - | tig0026532:34551-34570 | None:intergenic | 25.0% |
| !!! | CTTAACTTAACTTGCTATAT+TGG | + | tig0026532:34549-34568 | Msa1429590:five_prime_UTR | 25.0% |
| !! | GTTACTGAACATTATTGATT+TGG | + | tig0026532:34821-34840 | Msa1429590:five_prime_UTR | 25.0% |
| ! | TATTGAGAAATCAAAACCTA+AGG | + | tig0026532:35068-35087 | Msa1429590:CDS | 25.0% |
| ! | ATTGAGAAATCAAAACCTAA+GGG | + | tig0026532:35069-35088 | Msa1429590:CDS | 25.0% |
| ! | CCATGAAACAAATGAAAAAA+TGG | - | tig0026532:35119-35138 | None:intergenic | 25.0% |
| !!! | CCATTTTTTCATTTGTTTCA+TGG | + | tig0026532:35116-35135 | Msa1429590:CDS | 25.0% |
| !! | TTTTTCATTTGTTTCATGGT+TGG | + | tig0026532:35120-35139 | Msa1429590:CDS | 25.0% |
| !! | AAATCAAGGTTTTTCTTTTG+AGG | + | tig0026532:35203-35222 | Msa1429590:CDS | 25.0% |
| ! | AATATGATTCATCACTGAAT+TGG | - | tig0026532:35383-35402 | None:intergenic | 25.0% |
| ! | ATTCAGTGATGAATCATATT+TGG | + | tig0026532:35383-35402 | Msa1429590:CDS | 25.0% |
| ! | TGAAATAGATGATTGTAAGT+TGG | - | tig0026532:35438-35457 | None:intergenic | 25.0% |
| ! | CAAAATAAACAATTCCATTG+AGG | - | tig0026532:35683-35702 | None:intergenic | 25.0% |
| ! | TTAGTTCAAACAATGTTACT+CGG | + | tig0026532:35763-35782 | Msa1429590:intron | 25.0% |
| ! | ACACAAATAATGAATCAGAT+GGG | + | tig0026532:35982-36001 | Msa1429590:CDS | 25.0% |
| !! | ACTTAGCATATTTTCTTCTT+TGG | + | tig0026532:36144-36163 | Msa1429590:intron | 25.0% |
| ! | ATTGATCAAAACATCATTTC+AGG | - | tig0026532:36352-36371 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTCGCTATATGC+AGG | + | tig0026532:36382-36401 | Msa1429590:intron | 25.0% |
| ! | ATTCCTTCTATCCTAAAAAA+TGG | + | tig0026532:36510-36529 | Msa1429590:CDS | 25.0% |
| !!! | AATCCATTTTTTAGGATAGA+AGG | - | tig0026532:36516-36535 | None:intergenic | 25.0% |
| !!! | TTCTCTGTAATCCATTTTTT+AGG | - | tig0026532:36524-36543 | None:intergenic | 25.0% |
| ! | TTATGAAGAATTTCACACAA+GGG | - | tig0026532:36573-36592 | None:intergenic | 25.0% |
| ! | TTTATGAAGAATTTCACACA+AGG | - | tig0026532:36574-36593 | None:intergenic | 25.0% |
| ! | TGAAATTCTTCATAAAGAAG+CGG | + | tig0026532:36578-36597 | Msa1429590:exon | 25.0% |
| ! | AAGAATTATAGGTTTAGGAA+AGG | + | tig0026532:36682-36701 | Msa1429590:intron | 25.0% |
| ! | AGAATTATAGGTTTAGGAAA+GGG | + | tig0026532:36683-36702 | Msa1429590:intron | 25.0% |
| !! | GTAACTATCGATAACATTTT+TGG | - | tig0026532:36745-36764 | None:intergenic | 25.0% |
| !!! | TTTAGTATTGGTATATGCAA+AGG | - | tig0026532:36795-36814 | None:intergenic | 25.0% |
| ! | TTACATCTTACAAAACATAC+AGG | - | tig0026532:36937-36956 | None:intergenic | 25.0% |
| !! | GTTTTGTAAGATGTAAAAGA+AGG | + | tig0026532:36941-36960 | Msa1429590:intron | 25.0% |
| ! | CAAGGAAGATTATAAAGAAT+TGG | + | tig0026532:37067-37086 | Msa1429590:three_prime_UTR | 25.0% |
| !!! | GGTTTTTAATTATAATGCAC+AGG | - | tig0026532:37236-37255 | None:intergenic | 25.0% |
| ! | GTGCATTATAATTAAAAACC+AGG | + | tig0026532:37236-37255 | Msa1429590:three_prime_UTR | 25.0% |
| TAGAGATCTAATCTAAAAGG+AGG | - | tig0026532:34364-34383 | None:intergenic | 30.0% | |
| GTTAAGTTAAGGATGAAAAG+TGG | - | tig0026532:34540-34559 | None:intergenic | 30.0% | |
| TGGATATTCATTATTGAGCA+AGG | - | tig0026532:34589-34608 | None:intergenic | 30.0% | |
| !! | GTTAGTTTCTAGTTTGTATC+CGG | + | tig0026532:34716-34735 | Msa1429590:five_prime_UTR | 30.0% |
| !! | ACAACGAAAGAGTATTAACT+AGG | - | tig0026532:34747-34766 | None:intergenic | 30.0% |
| AACTTACTTAACTCCAAATG+AGG | - | tig0026532:34804-34823 | None:intergenic | 30.0% | |
| CAATATTCCACAAAGATCTT+GGG | - | tig0026532:35053-35072 | None:intergenic | 30.0% | |
| TCAATATTCCACAAAGATCT+TGG | - | tig0026532:35054-35073 | None:intergenic | 30.0% | |
| ATTTCTTGACATGAGATTCA+AGG | - | tig0026532:35187-35206 | None:intergenic | 30.0% | |
| AATCTCATGTCAAGAAATCA+AGG | + | tig0026532:35189-35208 | Msa1429590:CDS | 30.0% | |
| !! | CTTGTCACAAACTTTGAAAT+TGG | + | tig0026532:35476-35495 | Msa1429590:CDS | 30.0% |
| TTGCAAGATTTCTCATAAGA+AGG | - | tig0026532:35638-35657 | None:intergenic | 30.0% | |
| TTCAGCAAATGAGAGAAATA+AGG | + | tig0026532:35736-35755 | Msa1429590:CDS | 30.0% | |
| !! | CTTTCCTTCAATATTTTTGC+AGG | + | tig0026532:35862-35881 | Msa1429590:intron | 30.0% |
| AGATTATCAAAGGATAGAAG+CGG | + | tig0026532:35909-35928 | Msa1429590:CDS | 30.0% | |
| ACTTCACTTCCATTACAAAT+GGG | - | tig0026532:35951-35970 | None:intergenic | 30.0% | |
| CACACAAATAATGAATCAGA+TGG | + | tig0026532:35981-36000 | Msa1429590:CDS | 30.0% | |
| AATCAGATGGGAATTCTAAA+CGG | + | tig0026532:35994-36013 | Msa1429590:CDS | 30.0% | |
| TATGTAACATTTGTCCTTTG+CGG | + | tig0026532:36239-36258 | Msa1429590:CDS | 30.0% | |
| TTCTACATACTCTCATGTTA+TGG | + | tig0026532:36272-36291 | Msa1429590:CDS | 30.0% | |
| TGTTGAAGATGAAAGTGAAA+TGG | + | tig0026532:36427-36446 | Msa1429590:CDS | 30.0% | |
| TATGAAGAATTTCACACAAG+GGG | - | tig0026532:36572-36591 | None:intergenic | 30.0% | |
| GAAATTCTTCATAAAGAAGC+GGG | + | tig0026532:36579-36598 | Msa1429590:exon | 30.0% | |
| TTAAAAAGGGAAAAGTAGAC+AGG | + | tig0026532:36834-36853 | Msa1429590:intron | 30.0% | |
| TTGTAAGATGTAAAAGAAGG+AGG | + | tig0026532:36944-36963 | Msa1429590:intron | 30.0% | |
| ! | TATTAATCAATGGACTCGTA+GGG | - | tig0026532:37192-37211 | None:intergenic | 30.0% |
| TCAAAACTAAAATCCTCGGA+GGG | - | tig0026532:34336-34355 | None:intergenic | 35.0% | |
| TTCAAAACTAAAATCCTCGG+AGG | - | tig0026532:34337-34356 | None:intergenic | 35.0% | |
| ATTATTGAGCAAGGAGTTTC+GGG | - | tig0026532:34580-34599 | None:intergenic | 35.0% | |
| CATTATTGAGCAAGGAGTTT+CGG | - | tig0026532:34581-34600 | None:intergenic | 35.0% | |
| !!! | GAATATCCACTTGCCATTTT+TGG | + | tig0026532:34600-34619 | Msa1429590:five_prime_UTR | 35.0% |
| !!! | ATTTGGGGTGAAGGTTTTTT+TGG | + | tig0026532:34670-34689 | Msa1429590:five_prime_UTR | 35.0% |
| TTGGATAGTCAAATGTTGCT+TGG | + | tig0026532:34689-34708 | Msa1429590:five_prime_UTR | 35.0% | |
| !! | ACGAAAGAGTATTAACTAGG+AGG | - | tig0026532:34744-34763 | None:intergenic | 35.0% |
| AATTAGAAGAACCTTGTCTC+CGG | + | tig0026532:34866-34885 | Msa1429590:five_prime_UTR | 35.0% | |
| TGAAGAAGGTAACAATCCAT+CGG | - | tig0026532:34986-35005 | None:intergenic | 35.0% | |
| ! | TTTTCTTCCCAAGATCTTTG+TGG | + | tig0026532:35043-35062 | Msa1429590:CDS | 35.0% |
| ! | TTCATGGTTGGTGTTTCTAT+TGG | + | tig0026532:35132-35151 | Msa1429590:CDS | 35.0% |
| CAAGAACAAGAACTAACAGA+TGG | + | tig0026532:35333-35352 | Msa1429590:CDS | 35.0% | |
| TCAACAACAATCCACAACAA+AGG | - | tig0026532:35510-35529 | None:intergenic | 35.0% | |
| !! | CTGACATTTTGAGAAGTAGT+GGG | + | tig0026532:35556-35575 | Msa1429590:CDS | 35.0% |
| ATCGCCTGCAAAAATATTGA+AGG | - | tig0026532:35869-35888 | None:intergenic | 35.0% | |
| !! | CAATATTTTTGCAGGCGATT+TGG | + | tig0026532:35870-35889 | Msa1429590:intron | 35.0% |
| GACTGTTGCAAGATTATCAA+AGG | + | tig0026532:35899-35918 | Msa1429590:CDS | 35.0% | |
| CACTTCACTTCCATTACAAA+TGG | - | tig0026532:35952-35971 | None:intergenic | 35.0% | |
| ! | TGTAATGGAAGTGAAGTGAT+TGG | + | tig0026532:35954-35973 | Msa1429590:CDS | 35.0% |
| CTTCAACAGTACGATACTAT+GGG | + | tig0026532:36043-36062 | Msa1429590:CDS | 35.0% | |
| AATCAGTCAGGGAAAATTTG+TGG | + | tig0026532:36114-36133 | Msa1429590:CDS | 35.0% | |
| ATCAGTCAGGGAAAATTTGT+GGG | + | tig0026532:36115-36134 | Msa1429590:CDS | 35.0% | |
| TCAACTGAACCTGTTGAAAT+TGG | + | tig0026532:36186-36205 | Msa1429590:intron | 35.0% | |
| !! | TATTTTTGTTTCGCTCAACC+AGG | - | tig0026532:36307-36326 | None:intergenic | 35.0% |
| TGAAGATGAAAGTGAAATGG+AGG | + | tig0026532:36430-36449 | Msa1429590:CDS | 35.0% | |
| GAAGATGAAAGTGAAATGGA+GGG | + | tig0026532:36431-36450 | Msa1429590:CDS | 35.0% | |
| AGAACAACCTAGACATCATT+TGG | + | tig0026532:36540-36559 | Msa1429590:CDS | 35.0% | |
| GAAGATTCCAAATGATGTCT+AGG | - | tig0026532:36550-36569 | None:intergenic | 35.0% | |
| !!! | CTGAAGTTTTAACTCACAAC+AGG | - | tig0026532:36622-36641 | None:intergenic | 35.0% |
| ! | GTATTGGTATATGCAAAGGT+TGG | - | tig0026532:36791-36810 | None:intergenic | 35.0% |
| ! | CTATTAATCAATGGACTCGT+AGG | - | tig0026532:37193-37212 | None:intergenic | 35.0% |
| AAGTATATGATAGGACCAAC+TGG | - | tig0026532:37300-37319 | None:intergenic | 35.0% | |
| AAAACTAAAATCCTCGGAGG+GGG | - | tig0026532:34334-34353 | None:intergenic | 40.0% | |
| CAAAACTAAAATCCTCGGAG+GGG | - | tig0026532:34335-34354 | None:intergenic | 40.0% | |
| CATATGAAATGAGGGGAACT+GGG | - | tig0026532:34421-34440 | None:intergenic | 40.0% | |
| ACAGTGCCATATGAAATGAG+GGG | - | tig0026532:34428-34447 | None:intergenic | 40.0% | |
| GACAGTGCCATATGAAATGA+GGG | - | tig0026532:34429-34448 | None:intergenic | 40.0% | |
| AGACAGTGCCATATGAAATG+AGG | - | tig0026532:34430-34449 | None:intergenic | 40.0% | |
| CTTCTATGTTCAGTACCACT+TGG | + | tig0026532:34448-34467 | Msa1429590:five_prime_UTR | 40.0% | |
| TTGTCTTTCCCAGCCAAAAA+TGG | - | tig0026532:34616-34635 | None:intergenic | 40.0% | |
| TTGCCATACTTGTGCTCATT+TGG | + | tig0026532:34653-34672 | Msa1429590:five_prime_UTR | 40.0% | |
| TGCCATACTTGTGCTCATTT+GGG | + | tig0026532:34654-34673 | Msa1429590:five_prime_UTR | 40.0% | |
| GAGTATTAACTAGGAGGTTC+CGG | - | tig0026532:34738-34757 | None:intergenic | 40.0% | |
| ATCTACATTTCCTGCAGTTG+TGG | - | tig0026532:34901-34920 | None:intergenic | 40.0% | |
| TAGGAGAGGACTTAGATAAC+GGG | - | tig0026532:34941-34960 | None:intergenic | 40.0% | |
| GTAGGAGAGGACTTAGATAA+CGG | - | tig0026532:34942-34961 | None:intergenic | 40.0% | |
| ! | AACACCAAGCAAAAAAGCAC+TGG | - | tig0026532:35025-35044 | None:intergenic | 40.0% |
| CATGAGATTCAAGGACAAGT+TGG | - | tig0026532:35178-35197 | None:intergenic | 40.0% | |
| !!! | TCTTCACATTTTCGAGTGAC+TGG | - | tig0026532:35251-35270 | None:intergenic | 40.0% |
| TTCACAGCCTCATCAACTAA+CGG | - | tig0026532:35285-35304 | None:intergenic | 40.0% | |
| AACAATCCACAACAAAGGAG+GGG | - | tig0026532:35505-35524 | None:intergenic | 40.0% | |
| CAACAATCCACAACAAAGGA+GGG | - | tig0026532:35506-35525 | None:intergenic | 40.0% | |
| ACAACAATCCACAACAAAGG+AGG | - | tig0026532:35507-35526 | None:intergenic | 40.0% | |
| !! | GCTGACATTTTGAGAAGTAG+TGG | + | tig0026532:35555-35574 | Msa1429590:CDS | 40.0% |
| ATCTAACCAACACAAGCCAT+AGG | + | tig0026532:35610-35629 | Msa1429590:CDS | 40.0% | |
| TTCTCATAAGAAGGCTCCTA+TGG | - | tig0026532:35629-35648 | None:intergenic | 40.0% | |
| ATTGAAACTCATCGCCTCAA+TGG | + | tig0026532:35666-35685 | Msa1429590:CDS | 40.0% | |
| TGTTATTCACCTCTCACTCT+TGG | + | tig0026532:35798-35817 | Msa1429590:intron | 40.0% | |
| ATGGAAGTGAAGTGATTGGA+TGG | + | tig0026532:35958-35977 | Msa1429590:CDS | 40.0% | |
| CCATAGTATCGTACTGTTGA+AGG | - | tig0026532:36045-36064 | None:intergenic | 40.0% | |
| CCTTCAACAGTACGATACTA+TGG | + | tig0026532:36042-36061 | Msa1429590:CDS | 40.0% | |
| TACTATGGGATCCAAAGAAG+CGG | + | tig0026532:36057-36076 | Msa1429590:CDS | 40.0% | |
| TAACATTTGTCCTTTGCGGT+CGG | + | tig0026532:36243-36262 | Msa1429590:CDS | 40.0% | |
| TAGGTTTAGGAAAGGGAAGA+AGG | + | tig0026532:36690-36709 | Msa1429590:intron | 40.0% | |
| GAAGAAGGATCAGAGAAAGA+TGG | + | tig0026532:36705-36724 | Msa1429590:intron | 40.0% | |
| TTGAAAGATCAGAAGGAACC+TGG | - | tig0026532:37257-37276 | None:intergenic | 40.0% | |
| GTTCCTTCTGATCTTTCAAG+AGG | + | tig0026532:37258-37277 | Msa1429590:three_prime_UTR | 40.0% | |
| AGATGTTTCAGTTGTCCAGT+TGG | + | tig0026532:37282-37301 | Msa1429590:three_prime_UTR | 40.0% | |
| AAACTAAAATCCTCGGAGGG+GGG | - | tig0026532:34333-34352 | None:intergenic | 45.0% | |
| GGAGATTGAGATTCGGGATT+CGG | - | tig0026532:34400-34419 | None:intergenic | 45.0% | |
| GAACTGGGAGATTGAGATTC+GGG | - | tig0026532:34406-34425 | None:intergenic | 45.0% | |
| GGAACTGGGAGATTGAGATT+CGG | - | tig0026532:34407-34426 | None:intergenic | 45.0% | |
| CCATATGAAATGAGGGGAAC+TGG | - | tig0026532:34422-34441 | None:intergenic | 45.0% | |
| CCAGTTCCCCTCATTTCATA+TGG | + | tig0026532:34419-34438 | Msa1429590:five_prime_UTR | 45.0% | |
| TAAATGACAGCGAAGCAGAG+TGG | - | tig0026532:34501-34520 | None:intergenic | 45.0% | |
| ! | ACTCTGCTTCGCTGTCATTT+AGG | + | tig0026532:34500-34519 | Msa1429590:five_prime_UTR | 45.0% |
| !!! | ATCCACTTGCCATTTTTGGC+TGG | + | tig0026532:34604-34623 | Msa1429590:five_prime_UTR | 45.0% |
| !!! | TCCACTTGCCATTTTTGGCT+GGG | + | tig0026532:34605-34624 | Msa1429590:five_prime_UTR | 45.0% |
| ATGAGCACAAGTATGGCAAG+TGG | - | tig0026532:34652-34671 | None:intergenic | 45.0% | |
| GCCATACTTGTGCTCATTTG+GGG | + | tig0026532:34655-34674 | Msa1429590:five_prime_UTR | 45.0% | |
| ACCCCAAATGAGCACAAGTA+TGG | - | tig0026532:34659-34678 | None:intergenic | 45.0% | |
| ACCAACCAAACTGTCTACCT+GGG | + | tig0026532:34777-34796 | Msa1429590:five_prime_UTR | 45.0% | |
| TTAACTCCAAATGAGGTCCC+AGG | - | tig0026532:34797-34816 | None:intergenic | 45.0% | |
| AGGAGAGGACTTAGATAACG+GGG | - | tig0026532:34940-34959 | None:intergenic | 45.0% | |
| ATCGGATGGCATAGACTTCT+GGG | - | tig0026532:34968-34987 | None:intergenic | 45.0% | |
| GAAGGTAACAATCCATCGGA+TGG | - | tig0026532:34982-35001 | None:intergenic | 45.0% | |
| ACCTTCTTCATTCACCTCAC+TGG | + | tig0026532:34996-35015 | Msa1429590:CDS | 45.0% | |
| TCCAGTGAGGTGAATGAAGA+AGG | - | tig0026532:35000-35019 | None:intergenic | 45.0% | |
| !!! | GACTCCAGTGCTTTTTTGCT+TGG | + | tig0026532:35018-35037 | Msa1429590:CDS | 45.0% |
| CAAAACCTAAGGGTCAGCTT+TGG | + | tig0026532:35079-35098 | Msa1429590:CDS | 45.0% | |
| TTTCTCCAAAGCTGACCCTT+AGG | - | tig0026532:35087-35106 | None:intergenic | 45.0% | |
| !! | TAAGGGTCAGCTTTGGAGAA+AGG | + | tig0026532:35086-35105 | Msa1429590:CDS | 45.0% |
| ! | TGAGACACCGTTAGTTGATG+AGG | + | tig0026532:35275-35294 | Msa1429590:CDS | 45.0% |
| !! | CAAGTTGATCCAAGAGTGAG+AGG | - | tig0026532:35810-35829 | None:intergenic | 45.0% |
| ! | TTTGCAGGCGATTTGGAACA+TGG | + | tig0026532:35877-35896 | Msa1429590:intron | 45.0% |
| TTGCAAGGGCCCATTTGTAA+TGG | + | tig0026532:35939-35958 | Msa1429590:CDS | 45.0% | |
| CGGTTTCATGCTGAAATGCA+AGG | + | tig0026532:36014-36033 | Msa1429590:CDS | 45.0% | |
| TGATAGGTTCATGAGACGGT+CGG | - | tig0026532:36085-36104 | None:intergenic | 45.0% | |
| TGCCTGATAGGTTCATGAGA+CGG | - | tig0026532:36089-36108 | None:intergenic | 45.0% | |
| GTCAGGGAAAATTTGTGGGT+TGG | + | tig0026532:36119-36138 | Msa1429590:CDS | 45.0% | |
| AGCTGCAGACCAATTTCAAC+AGG | - | tig0026532:36198-36217 | None:intergenic | 45.0% | |
| AACATTTGTCCTTTGCGGTC+GGG | + | tig0026532:36244-36263 | Msa1429590:CDS | 45.0% | |
| ATGTTATGGCTATCCTCTCC+TGG | + | tig0026532:36286-36305 | Msa1429590:CDS | 45.0% | |
| ACTGCTCGAGAGTTATGGTT+TGG | + | tig0026532:36465-36484 | Msa1429590:CDS | 45.0% | |
| GCATTCTGTTATGCACTGCA+AGG | + | tig0026532:37049-37068 | Msa1429590:intron | 45.0% | |
| CTCAAATGGCTACGCCTATT+CGG | + | tig0026532:37129-37148 | Msa1429590:three_prime_UTR | 45.0% | |
| ! | AAGTCACTGTGATGGCGAAT+GGG | - | tig0026532:37159-37178 | None:intergenic | 45.0% |
| ! | AATCAATGGACTCGTAGGGA+TGG | - | tig0026532:37188-37207 | None:intergenic | 45.0% |
| CTGCCTCTTGAAAGATCAGA+AGG | - | tig0026532:37264-37283 | None:intergenic | 45.0% | |
| !! | TTGAGATTCGGGATTCGGTG+TGG | - | tig0026532:34395-34414 | None:intergenic | 50.0% |
| GTACCACTTGGTCGCAAAGT+TGG | + | tig0026532:34460-34479 | Msa1429590:five_prime_UTR | 50.0% | |
| GTTCCAACTTTGCGACCAAG+TGG | - | tig0026532:34466-34485 | None:intergenic | 50.0% | |
| TCCCAGCCAAAAATGGCAAG+TGG | - | tig0026532:34609-34628 | None:intergenic | 50.0% | |
| ! | CTTGTGCTCATTTGGGGTGA+AGG | + | tig0026532:34661-34680 | Msa1429590:five_prime_UTR | 50.0% |
| !! | CAGTTTGGTTGGTGAGCTGA+AGG | - | tig0026532:34770-34789 | None:intergenic | 50.0% |
| CACCAACCAAACTGTCTACC+TGG | + | tig0026532:34776-34795 | Msa1429590:five_prime_UTR | 50.0% | |
| TCCCAGGTAGACAGTTTGGT+TGG | - | tig0026532:34781-34800 | None:intergenic | 50.0% | |
| TGTCTACCTGGGACCTCATT+TGG | + | tig0026532:34788-34807 | Msa1429590:five_prime_UTR | 50.0% | |
| TCGGATGGCATAGACTTCTG+GGG | - | tig0026532:34967-34986 | None:intergenic | 50.0% | |
| CATCGGATGGCATAGACTTC+TGG | - | tig0026532:34969-34988 | None:intergenic | 50.0% | |
| CAGAAGTCTATGCCATCCGA+TGG | + | tig0026532:34967-34986 | Msa1429590:CDS | 50.0% | |
| !! | AAAAGCACTGGAGTCCAGTG+AGG | - | tig0026532:35013-35032 | None:intergenic | 50.0% |
| !! | ACAAGTTGGTTGATGCGAGC+GGG | - | tig0026532:35164-35183 | None:intergenic | 50.0% |
| !! | GACAAGTTGGTTGATGCGAG+CGG | - | tig0026532:35165-35184 | None:intergenic | 50.0% |
| ! | AAGGCTCCTATGGCTTGTGT+TGG | - | tig0026532:35619-35638 | None:intergenic | 50.0% |
| AGAAGCGGCATTCTCTTGCA+AGG | + | tig0026532:35924-35943 | Msa1429590:CDS | 50.0% | |
| GAAGCGGCATTCTCTTGCAA+GGG | + | tig0026532:35925-35944 | Msa1429590:CDS | 50.0% | |
| GACCGTCTCATGAACCTATC+AGG | + | tig0026532:36084-36103 | Msa1429590:CDS | 50.0% | |
| !! | ACTGATTCGAGCTGCCTGAT+AGG | - | tig0026532:36101-36120 | None:intergenic | 50.0% |
| TTGTTTCGCTCAACCAGGAG+AGG | - | tig0026532:36302-36321 | None:intergenic | 50.0% | |
| CTCTCGAGCAGTCGTTCATT+AGG | - | tig0026532:36457-36476 | None:intergenic | 50.0% | |
| GAACGACTGCTCGAGAGTTA+TGG | + | tig0026532:36460-36479 | Msa1429590:CDS | 50.0% | |
| GGCGAATGGGATATCCGAAT+AGG | - | tig0026532:37146-37165 | None:intergenic | 50.0% | |
| ! | CAAGTCACTGTGATGGCGAA+TGG | - | tig0026532:37160-37179 | None:intergenic | 50.0% |
| GGTATCGCAAGTCACTGTGA+TGG | - | tig0026532:37167-37186 | None:intergenic | 50.0% | |
| TCCTCGGAGGGGGGAAAAAA+CGG | - | tig0026532:34324-34343 | None:intergenic | 55.0% | |
| !! | GATTCGGGATTCGGTGTGGT+TGG | - | tig0026532:34391-34410 | None:intergenic | 55.0% |
| ATGACAGCGAAGCAGAGTGG+AGG | - | tig0026532:34498-34517 | None:intergenic | 55.0% | |
| GAGGTCCCAGGTAGACAGTT+TGG | - | tig0026532:34785-34804 | None:intergenic | 55.0% | |
| TTTCCTGCAGTTGTGGCTCG+AGG | - | tig0026532:34894-34913 | None:intergenic | 55.0% | |
| ! | GATGGCATAGACTTCTGGGG+GGG | - | tig0026532:34964-34983 | None:intergenic | 55.0% |
| GGATGGCATAGACTTCTGGG+GGG | - | tig0026532:34965-34984 | None:intergenic | 55.0% | |
| CGGATGGCATAGACTTCTGG+GGG | - | tig0026532:34966-34985 | None:intergenic | 55.0% | |
| TGGTCTCCCCTCCTTTGTTG+TGG | + | tig0026532:35496-35515 | Msa1429590:CDS | 55.0% | |
| TCAGGCAGCTCGAATCAGTC+AGG | + | tig0026532:36102-36121 | Msa1429590:CDS | 55.0% | |
| CAGGCAGCTCGAATCAGTCA+GGG | + | tig0026532:36103-36122 | Msa1429590:CDS | 55.0% | |
| AGAACATCACCCGACCGCAA+AGG | - | tig0026532:36256-36275 | None:intergenic | 55.0% | |
| !!! | TCCGTTTTTTCCCCCCTCCG+AGG | + | tig0026532:34320-34339 | Msa1429590:five_prime_UTR | 60.0% |
| GCAGTTGTGGCTCGAGGAAC+CGG | - | tig0026532:34888-34907 | None:intergenic | 60.0% | |
| GTTCCTCGAGCCACAACTGC+AGG | + | tig0026532:34888-34907 | Msa1429590:five_prime_UTR | 60.0% | |
| ! | GCATAGACTTCTGGGGGGGT+AGG | - | tig0026532:34960-34979 | None:intergenic | 60.0% |
| ! | TGGTTGATGCGAGCGGGATG+AGG | - | tig0026532:35158-35177 | None:intergenic | 60.0% |
| GGCTCGAGGAACCGGAGACA+AGG | - | tig0026532:34880-34899 | None:intergenic | 65.0% | |
| ! | GACTTCTGGGGGGGTAGGAG+AGG | - | tig0026532:34955-34974 | None:intergenic | 65.0% |
| !! | GACGGTCGGTGCCGCTTCTT+TGG | - | tig0026532:36071-36090 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026532 | gene | 34299 | 37517 | 34299 | ID=Msa1429590;Name=Msa1429590 |
| tig0026532 | mRNA | 34299 | 37517 | 34299 | ID=Msa1429590-mRNA-1;Parent=Msa1429590;Name=Msa1429590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=620|0.5|0.6|1|0.75|0.8|5|512|454 |
| tig0026532 | exon | 34299 | 35757 | 34299 | ID=Msa1429590-mRNA-1:exon:6600;Parent=Msa1429590-mRNA-1 |
| tig0026532 | exon | 35884 | 36140 | 35884 | ID=Msa1429590-mRNA-1:exon:6601;Parent=Msa1429590-mRNA-1 |
| tig0026532 | exon | 36216 | 36307 | 36216 | ID=Msa1429590-mRNA-1:exon:6602;Parent=Msa1429590-mRNA-1 |
| tig0026532 | exon | 36404 | 36624 | 36404 | ID=Msa1429590-mRNA-1:exon:6603;Parent=Msa1429590-mRNA-1 |
| tig0026532 | exon | 37050 | 37517 | 37050 | ID=Msa1429590-mRNA-1:exon:6604;Parent=Msa1429590-mRNA-1 |
| tig0026532 | five_prime_UTR | 34299 | 34918 | 34299 | ID=Msa1429590-mRNA-1:five_prime_utr;Parent=Msa1429590-mRNA-1 |
| tig0026532 | CDS | 34919 | 35757 | 34919 | ID=Msa1429590-mRNA-1:cds;Parent=Msa1429590-mRNA-1 |
| tig0026532 | CDS | 35884 | 36140 | 35884 | ID=Msa1429590-mRNA-1:cds;Parent=Msa1429590-mRNA-1 |
| tig0026532 | CDS | 36216 | 36307 | 36216 | ID=Msa1429590-mRNA-1:cds;Parent=Msa1429590-mRNA-1 |
| tig0026532 | CDS | 36404 | 36580 | 36404 | ID=Msa1429590-mRNA-1:cds;Parent=Msa1429590-mRNA-1 |
| tig0026532 | three_prime_UTR | 36581 | 36624 | 36581 | ID=Msa1429590-mRNA-1:three_prime_utr;Parent=Msa1429590-mRNA-1 |
| tig0026532 | three_prime_UTR | 37050 | 37517 | 37050 | ID=Msa1429590-mRNA-1:three_prime_utr;Parent=Msa1429590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
