AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1328870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328870 MtrunA17_Chr5g0401131 60.156 512 122 15 1 457 7 491 0.0 525
Msa1328870 MtrunA17_Chr4g0054071 93.133 233 10 3 1 230 7 236 1.39e-115 339
Msa1328870 MtrunA17_Chr2g0329591 43.614 415 166 10 99 457 50 452 1.62e-104 318
Msa1328870 MtrunA17_Chr5g0445331 27.225 382 218 9 127 456 159 532 3.66e-41 154
Msa1328870 MtrunA17_Chr1g0159461 27.368 380 216 10 127 456 223 592 7.83e-40 151
Msa1328870 MtrunA17_Chr5g0447691 26.579 380 219 9 127 456 175 544 4.38e-39 148
Msa1328870 MtrunA17_Chr2g0319091 26.893 383 214 9 127 456 210 579 1.21e-37 144
Msa1328870 MtrunA17_Chr3g0101141 25.126 398 222 10 117 456 163 542 4.16e-36 140
Msa1328870 MtrunA17_Chr3g0125811 26.053 380 221 10 127 456 201 570 4.51e-36 140
Msa1328870 MtrunA17_Chr7g0224271 26.615 387 214 11 128 456 299 673 1.24e-34 137
Msa1328870 MtrunA17_Chr4g0053901 23.899 477 262 10 72 457 3 469 3.43e-34 133
Msa1328870 MtrunA17_Chr5g0401421 24.249 433 226 10 118 457 24 447 1.14e-32 129
Msa1328870 MtrunA17_Chr2g0290241 26.124 356 203 10 151 456 80 425 3.85e-32 127
Msa1328870 MtrunA17_Chr4g0076091 25.393 382 220 11 127 455 173 542 1.26e-31 127
Msa1328870 MtrunA17_Chr8g0344101 27.318 399 206 13 125 456 219 600 1.00e-29 122
Msa1328870 MtrunA17_Chr7g0245601 24.595 370 218 13 132 457 441 793 1.19e-26 113
Msa1328870 MtrunA17_Chr4g0057291 23.238 383 231 10 128 457 291 663 5.64e-26 111
Msa1328870 MtrunA17_Chr4g0039661 25.729 377 215 9 130 456 194 555 1.11e-25 109
Msa1328870 MtrunA17_Chr8g0376381 23.387 372 221 9 130 456 170 522 1.81e-25 108
Msa1328870 MtrunA17_Chr3g0110971 23.560 382 223 8 130 456 220 587 1.82e-25 109
Msa1328870 MtrunA17_Chr2g0328341 23.873 377 230 12 129 457 272 639 4.47e-24 105
Msa1328870 MtrunA17_Chr2g0328391 25.722 381 226 9 127 457 297 670 5.99e-24 105
Msa1328870 MtrunA17_Chr4g0038761 24.599 374 217 15 132 457 87 443 7.16e-23 100
Msa1328870 MtrunA17_Chr2g0328381 22.222 387 224 12 129 457 275 642 2.30e-22 100
Msa1328870 MtrunA17_Chr7g0236851 27.869 244 162 5 218 455 421 656 2.70e-22 100
Msa1328870 MtrunA17_Chr4g0057891 22.597 385 228 10 129 456 149 520 1.20e-21 97.4
Msa1328870 MtrunA17_Chr4g0031701 24.147 381 225 12 127 453 252 622 1.75e-21 97.4
Msa1328870 MtrunA17_Chr4g0031711 22.977 383 236 8 127 457 359 734 1.77e-21 97.8
Msa1328870 MtrunA17_Chr4g0031721 23.298 382 232 11 127 457 314 685 3.06e-21 97.1
Msa1328870 MtrunA17_Chr4g0031741 23.947 380 226 12 129 457 284 651 3.43e-21 96.7
Msa1328870 MtrunA17_Chr8g0357601 24.274 379 226 14 130 456 183 552 5.24e-21 95.9
Msa1328870 MtrunA17_Chr2g0323111 29.348 184 118 4 279 457 131 307 5.38e-21 93.6
Msa1328870 MtrunA17_Chr2g0306641 23.167 341 197 10 165 456 163 487 7.30e-21 95.1
Msa1328870 MtrunA17_Chr4g0031731 23.360 381 228 10 127 453 252 622 6.41e-20 92.8
Msa1328870 MtrunA17_Chr7g0238891 21.164 378 245 8 127 457 370 741 4.37e-19 90.1
Msa1328870 MtrunA17_Chr2g0328411 22.546 377 230 12 129 455 289 653 5.44e-19 90.1
Msa1328870 MtrunA17_Chr2g0328401 21.893 338 217 8 129 422 290 624 2.28e-18 87.8
Msa1328870 MtrunA17_Chr1g0183641 24.259 371 220 13 129 455 123 476 3.69e-18 86.7
Msa1328870 MtrunA17_Chr2g0328431 22.812 377 233 11 129 457 289 655 1.56e-17 85.5
Msa1328870 MtrunA17_Chr6g0468561 24.365 394 212 15 126 456 292 662 1.01e-15 79.7
Msa1328870 MtrunA17_Chr1g0200401 24.378 402 210 14 128 456 79 459 1.73e-15 78.6
Msa1328870 MtrunA17_Chr1g0194621 24.255 235 168 5 226 456 290 518 3.40e-15 77.8
Msa1328870 MtrunA17_Chr3g0085681 28.395 162 108 4 296 456 282 436 6.55e-15 76.6
Msa1328870 MtrunA17_Chr3g0085361 27.778 162 108 3 296 456 197 350 6.59e-14 72.8
Msa1328870 MtrunA17_Chr7g0270031 23.207 237 173 5 224 456 323 554 4.80e-13 71.2
Msa1328870 MtrunA17_Chr3g0114841 23.454 388 230 13 128 455 119 499 8.71e-13 70.1
Msa1328870 MtrunA17_Chr5g0396491 29.677 155 100 4 304 456 331 478 2.10e-12 68.9
Msa1328870 MtrunA17_Chr2g0328371 26.699 206 132 8 213 405 49 248 7.34e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328870 AT4G37650.1 50.595 504 159 13 33 457 38 530 7.51e-152 442
Msa1328870 AT2G04890.1 27.763 371 215 7 129 456 53 413 7.47e-44 159
Msa1328870 AT1G50600.3 26.402 428 244 11 83 456 116 526 1.47e-40 152
Msa1328870 AT1G50600.1 26.402 428 244 11 83 456 187 597 3.16e-40 152
Msa1328870 AT1G50600.2 26.402 428 244 11 83 456 191 601 3.60e-40 152
Msa1328870 AT1G21450.1 28.571 399 204 13 119 456 215 593 5.75e-38 146
Msa1328870 AT3G49950.1 28.316 392 210 11 127 457 28 409 6.13e-36 137
Msa1328870 AT5G48150.1 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1328870 AT5G48150.4 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1328870 AT5G48150.2 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1328870 AT5G48150.3 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1328870 AT1G66350.1 27.446 368 209 10 130 456 156 506 2.80e-31 126
Msa1328870 AT3G03450.1 24.603 378 222 8 128 456 182 545 7.38e-31 125
Msa1328870 AT4G17230.1 23.958 384 226 10 127 457 156 526 1.82e-30 124
Msa1328870 AT4G17230.2 23.958 384 226 10 127 457 156 526 1.82e-30 124
Msa1328870 AT5G17490.1 25.538 372 216 8 130 456 161 516 1.74e-29 121
Msa1328870 AT2G29060.2 24.582 419 240 13 101 457 252 656 5.43e-26 111
Msa1328870 AT2G29060.1 24.582 419 240 13 101 457 289 693 6.50e-26 111
Msa1328870 AT3G54220.1 25.201 373 215 14 132 457 296 651 1.71e-25 110
Msa1328870 AT1G14920.1 24.528 371 222 9 130 456 173 529 4.40e-25 108
Msa1328870 AT2G01570.1 22.911 371 228 9 130 456 225 581 1.49e-23 103
Msa1328870 AT2G37650.2 23.670 376 236 10 127 457 333 702 5.75e-23 102
Msa1328870 AT2G37650.1 23.670 376 236 10 127 457 345 714 5.84e-23 102
Msa1328870 AT1G07530.1 22.835 381 236 8 127 457 394 766 1.85e-22 101
Msa1328870 AT3G13840.1 25.131 382 221 14 125 456 144 510 2.85e-22 99.8
Msa1328870 AT5G52510.1 25.856 263 179 6 199 456 389 640 3.02e-22 100
Msa1328870 AT5G66770.1 24.865 370 216 9 137 456 227 584 9.39e-22 98.6
Msa1328870 AT2G29065.1 22.338 385 240 11 127 457 250 629 9.47e-22 98.6
Msa1328870 AT1G63100.2 24.870 386 224 13 128 455 276 653 2.56e-20 94.4
Msa1328870 AT1G63100.1 24.870 386 224 13 128 455 251 628 3.62e-20 94.0
Msa1328870 AT1G50420.1 22.248 436 220 11 128 456 56 479 1.21e-19 91.7
Msa1328870 AT5G41920.1 24.000 375 223 13 128 456 42 400 3.09e-19 89.7
Msa1328870 AT3G50650.1 24.069 349 201 8 160 456 206 542 3.60e-19 90.5
Msa1328870 AT3G46600.1 22.105 380 238 7 127 457 210 580 2.71e-18 87.8
Msa1328870 AT3G46600.2 22.105 380 238 7 127 457 2 372 2.73e-18 86.7
Msa1328870 AT1G55580.1 25.061 411 216 15 129 456 44 445 3.13e-18 87.0
Msa1328870 AT3G46600.3 22.105 380 238 7 127 457 178 548 5.29e-18 87.0
Msa1328870 AT5G59450.1 21.932 383 239 9 127 457 225 599 1.16e-16 83.2
Msa1328870 AT4G08250.1 24.832 298 167 9 207 455 187 476 4.27e-12 68.6

Find 119 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGTTTGGTAATTAATTT+AGG 0.130849 8_4:-46882897 Msa1328870:three_prime_UTR
AGTATAAGAGGATTGATTAA+AGG 0.252023 8_4:-46882872 Msa1328870:three_prime_UTR
AAACAAATCACGGTGGTTTC+CGG 0.257711 8_4:+46883512 None:intergenic
AAGAGTGTTTAAGATGGTTT+AGG 0.258495 8_4:-46883389 Msa1328870:CDS
ATTCTTCGTCTTCTTCTTGT+TGG 0.301725 8_4:+46884417 None:intergenic
TTGATCAAAATATGTAAGTT+TGG 0.303339 8_4:-46882910 Msa1328870:three_prime_UTR
TAAGTTTGGTAATTAATTTA+GGG 0.321407 8_4:-46882896 Msa1328870:three_prime_UTR
AGGAGGAGGTTGCATGGTGG+TGG 0.328666 8_4:-46883219 Msa1328870:CDS
TTGTCCATGGACTAACTTCT+TGG 0.329314 8_4:+46883910 None:intergenic
TAAGTAGTGTTTGTTGTGTT+TGG 0.339821 8_4:+46884275 None:intergenic
ATGAAGTTTGTGATGATGTT+AGG 0.345281 8_4:-46883173 Msa1328870:CDS
GCTGATTTAGAAGTTTGTTT+TGG 0.347659 8_4:-46883435 Msa1328870:CDS
TAAGGTGGTGGTGGAGTTGA+TGG 0.368817 8_4:+46884493 None:intergenic
AGAGTGTTTAAGATGGTTTA+GGG 0.373474 8_4:-46883388 Msa1328870:CDS
TGGAAGAGGTATTGTTGATT+TGG 0.374691 8_4:-46883295 Msa1328870:CDS
CACGTGCGTTTGGGATTCAT+TGG 0.375500 8_4:-46882976 Msa1328870:three_prime_UTR
ATCACGGTGGTTTCCGGCTC+CGG 0.383080 8_4:+46883518 None:intergenic
GTATAAGAGGATTGATTAAA+GGG 0.383571 8_4:-46882871 Msa1328870:three_prime_UTR
AACTCTTTACATTCGATATC+CGG 0.397888 8_4:-46883537 Msa1328870:CDS
TCCACATGAGTTGTTGGATT+CGG 0.400997 8_4:+46884108 None:intergenic
CGTCTCTCCATTGACTCATA+AGG 0.404423 8_4:+46883261 None:intergenic
TACTTCAACTTTGAATTCTC+CGG 0.412778 8_4:-46884194 Msa1328870:CDS
GTTAGTCCATGGACAACGTT+TGG 0.420735 8_4:-46883903 Msa1328870:CDS
AAAATGCACGTGCGGTTTCA+AGG 0.430548 8_4:+46884147 None:intergenic
CGGTGGTGTGGGCCAGTGTA+TGG 0.430711 8_4:-46883059 Msa1328870:CDS
CTTCCACGACAAGAATATTC+CGG 0.431546 8_4:+46883089 None:intergenic
GCATGGTGGTGGGTTTAATA+CGG 0.431980 8_4:-46883208 Msa1328870:CDS
GGAGGAGGTTGCATGGTGGT+GGG 0.435450 8_4:-46883218 Msa1328870:CDS
TATTAAAGAAGATGAAGCTT+TGG 0.437246 8_4:-46883574 Msa1328870:CDS
TTAATTTAGGGGAGTATAAG+AGG 0.440289 8_4:-46882884 Msa1328870:three_prime_UTR
TGTTTATATCTTTGCTTCGT+GGG 0.441689 8_4:-46883494 Msa1328870:CDS
TTAGCATCCACATGAGTTGT+TGG 0.445709 8_4:+46884102 None:intergenic
TTTACATAAGAATAGGGTTG+TGG 0.448203 8_4:-46882733 Msa1328870:three_prime_UTR
TTGTTTATATCTTTGCTTCG+TGG 0.451946 8_4:-46883495 Msa1328870:CDS
GCCTTGAGGTGGCGCTGACA+TGG 0.452766 8_4:-46883034 Msa1328870:exon
CACCACAGTCAGCGGTGGCT+CGG 0.457207 8_4:-46883718 Msa1328870:intron
TGCTTCGTGGGTTAGAACCT+AGG 0.461690 8_4:-46883482 Msa1328870:CDS
CAGCGTCACGGTGGAGGAGG+AGG 0.463327 8_4:-46883233 Msa1328870:CDS
GTGGAGTTGATGGAAGGATC+AGG 0.465751 8_4:+46884503 None:intergenic
TTTGGTTCGGATTTCGTGGA+AGG 0.470121 8_4:-46883417 Msa1328870:CDS
TGAAGTTTGTGATGATGTTA+GGG 0.470148 8_4:-46883172 Msa1328870:CDS
GATTCGGTTTGTGTTGTTGT+CGG 0.471253 8_4:+46884124 None:intergenic
GCTATCTTAGAAGCATTAGA+AGG 0.474912 8_4:-46883861 Msa1328870:intron
GTCTCTCCATTGACTCATAA+GGG 0.477366 8_4:+46883262 None:intergenic
ATGTTAGGGCTTTGTTGAGA+AGG 0.482294 8_4:-46883158 Msa1328870:CDS
AGAGCTGCTAGAAGTTGTTA+AGG 0.490994 8_4:+46884475 None:intergenic
TCATGAAGGAAATCGGTTCA+AGG 0.493998 8_4:-46883686 Msa1328870:CDS
TTGAATTCTCCGGCAACTCA+TGG 0.501115 8_4:-46884184 Msa1328870:CDS
GCTTCGTGGGTTAGAACCTA+GGG 0.504275 8_4:-46883481 Msa1328870:CDS
GTAATTATCAGTTGTGGTGG+GGG 0.506791 8_4:+46884238 None:intergenic
TTGATGCTAGAAAGAGAAGC+TGG 0.507592 8_4:-46883315 Msa1328870:CDS
GAGGTGGCGCTGACATGGCA+TGG 0.508114 8_4:-46883029 Msa1328870:three_prime_UTR
ATAGTAGTAGTGGATGCATA+AGG 0.510603 8_4:+46884305 None:intergenic
AGAGTAATTATCAGTTGTGG+TGG 0.511198 8_4:+46884235 None:intergenic
TGTTCCTCCGATGGTGATGC+CGG 0.512206 8_4:-46883108 Msa1328870:CDS
GAGTAATTATCAGTTGTGGT+GGG 0.513221 8_4:+46884236 None:intergenic
TTTGATCTGTGTCACCGTAT+GGG 0.514015 8_4:+46884066 None:intergenic
CGGTGGAGGAGGAGGTTGCA+TGG 0.514673 8_4:-46883225 Msa1328870:CDS
GAAGGATAAGCCGGTGGTGT+GGG 0.516813 8_4:-46883070 Msa1328870:CDS
GGAAGGATAAGCCGGTGGTG+TGG 0.518070 8_4:-46883071 Msa1328870:CDS
CGGAATATTCTTGTCGTGGA+AGG 0.518332 8_4:-46883088 Msa1328870:CDS
CTAGAAAGAGAAGCTGGAAG+AGG 0.518793 8_4:-46883309 Msa1328870:CDS
AAACAGCGTCACGGTGGAGG+AGG 0.519490 8_4:-46883236 Msa1328870:CDS
CATACACTGGCCCACACCAC+CGG 0.526670 8_4:+46883060 None:intergenic
TTGATCTGTGTCACCGTATG+GGG 0.527505 8_4:+46884067 None:intergenic
TTGTTGAGAAGGTATAAAGA+AGG 0.530989 8_4:-46883147 Msa1328870:CDS
AGAAGTTGTTAAGGTGGTGG+TGG 0.532155 8_4:+46884484 None:intergenic
ACCTCAAGGCCTCCATACAC+TGG 0.532917 8_4:+46883047 None:intergenic
TGCTTCTAAGATAGCACCGT+TGG 0.532927 8_4:+46883869 None:intergenic
TCAACAATAGTTAAAACCCT+AGG 0.537053 8_4:+46883465 None:intergenic
GCCATGTCAGCGCCACCTCA+AGG 0.538008 8_4:+46883033 None:intergenic
TGTTGAGAAGGTATAAAGAA+GGG 0.543842 8_4:-46883146 Msa1328870:CDS
TTTAGTCGCATGAACGACGC+GGG 0.545808 8_4:-46884014 Msa1328870:intron
CATCTTCCTCGTTGAATCGA+AGG 0.549319 8_4:+46883944 None:intergenic
ACGTGTCCAAACGTTGTCCA+TGG 0.550032 8_4:+46883897 None:intergenic
AGTAATTATCAGTTGTGGTG+GGG 0.552091 8_4:+46884237 None:intergenic
GAAGGAAATCGGTTCAAGGA+TGG 0.552770 8_4:-46883682 Msa1328870:CDS
ATTCAAAGTTGAAGTAATCG+TGG 0.563080 8_4:+46884201 None:intergenic
TTGATATGTTGTTTGTCTTG+AGG 0.563090 8_4:+46884448 None:intergenic
TGGAGTAGTGATAGTAGTAG+TGG 0.565967 8_4:+46884295 None:intergenic
GCCAGTGTATGGAGGCCTTG+AGG 0.566308 8_4:-46883048 Msa1328870:exon
TTGTGACCCTTATGAGTCAA+TGG 0.568784 8_4:-46883268 Msa1328870:CDS
GTGAAACAGCGTCACGGTGG+AGG 0.572256 8_4:-46883239 Msa1328870:CDS
GAATATTCCGGCATCACCAT+CGG 0.580354 8_4:+46883101 None:intergenic
TTTCAAGAACAAGTAGTGAG+AGG 0.582987 8_4:-46883338 Msa1328870:CDS
AGTTCCAAGAAGTTAGTCCA+TGG 0.584447 8_4:-46883914 Msa1328870:CDS
TTACATTCGATATCCGGAGC+CGG 0.585693 8_4:-46883531 Msa1328870:CDS
ATGGACAACGTTTGGACACG+TGG 0.586613 8_4:-46883895 Msa1328870:CDS
TTCAAAGTTGAAGTAATCGT+GGG 0.586851 8_4:+46884202 None:intergenic
ATGACACAGTGTTCCTCCGA+TGG 0.587322 8_4:-46883117 Msa1328870:CDS
TTTGGACACGTGGCAGCCAA+CGG 0.587329 8_4:-46883885 Msa1328870:CDS
CTTGTCGTGGAAGGATAAGC+CGG 0.587868 8_4:-46883079 Msa1328870:CDS
AGGTGGCGCTGACATGGCAT+GGG 0.590917 8_4:-46883028 Msa1328870:three_prime_UTR
GTTTAGTCGCATGAACGACG+CGG 0.592117 8_4:-46884015 Msa1328870:intron
GTGTTGTTTAGAAGAAGATG+AGG 0.594437 8_4:+46884340 None:intergenic
GAAAGAGTAATTATCAGTTG+TGG 0.594879 8_4:+46884232 None:intergenic
GCAAAGATATAAACAAATCA+CGG 0.596997 8_4:+46883502 None:intergenic
AAGTTTGGTAATTAATTTAG+GGG 0.604828 8_4:-46882895 Msa1328870:three_prime_UTR
TGGTGTGGGCCAGTGTATGG+AGG 0.609272 8_4:-46883056 Msa1328870:CDS
AGTGTATGGAGGCCTTGAGG+TGG 0.614107 8_4:-46883045 Msa1328870:exon
ATGCCGGAATATTCTTGTCG+TGG 0.614564 8_4:-46883092 Msa1328870:CDS
ACCGAATCCAACAACTCATG+TGG 0.616002 8_4:-46884109 Msa1328870:CDS
AACGAGCTTAGTTCCCCATA+CGG 0.616114 8_4:-46884080 Msa1328870:CDS
GTGGTGGTGGAGTTGATGGA+AGG 0.616191 8_4:+46884497 None:intergenic
GCTAGAAGTTGTTAAGGTGG+TGG 0.616229 8_4:+46884481 None:intergenic
AAGTTGAAGTAATCGTGGGA+GGG 0.628358 8_4:+46884206 None:intergenic
GCTGCTAGAAGTTGTTAAGG+TGG 0.637704 8_4:+46884478 None:intergenic
AAAGTTGAAGTAATCGTGGG+AGG 0.640378 8_4:+46884205 None:intergenic
TGAGAAGGTATAAAGAAGGG+TGG 0.652792 8_4:-46883143 Msa1328870:CDS
GTTGTCACCACAGTCAGCGG+TGG 0.658729 8_4:-46883723 Msa1328870:intron
CAAAACCTTAACATCCGCGT+CGG 0.669594 8_4:-46883979 Msa1328870:CDS
GTCGTGGAAGGATAAGCCGG+TGG 0.674105 8_4:-46883076 Msa1328870:CDS
TATTCCGGCATCACCATCGG+AGG 0.676733 8_4:+46883104 None:intergenic
CATGTTCCTTCGATTCAACG+AGG 0.690083 8_4:-46883950 Msa1328870:CDS
TGGAGGAGGAGGTTGCATGG+TGG 0.690855 8_4:-46883222 Msa1328870:CDS
GTTGTCGGAAAATGCACGTG+CGG 0.703618 8_4:+46884139 None:intergenic
AGAGACGTGAAACAGCGTCA+CGG 0.722636 8_4:-46883245 Msa1328870:CDS
ATGCACGTGCGGTTTCAAGG+AGG 0.744530 8_4:+46884150 None:intergenic
AAGATATAAACAAATCACGG+TGG 0.755243 8_4:+46883505 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTTGGTAATTAATTTA+GGG - chr8_4:46884356-46884375 Msa1328870:CDS 15.0%
!! TGTATTAAAAAAGGAATTAA+CGG - chr8_4:46884412-46884431 Msa1328870:CDS 15.0%
!!! ATTTTTGTTTACATAAGAAT+AGG - chr8_4:46884512-46884531 Msa1328870:CDS 15.0%
!!! TTTTTGTTTACATAAGAATA+GGG - chr8_4:46884513-46884532 Msa1328870:CDS 15.0%
!!! TAAGTTTGGTAATTAATTTA+GGG - chr8_4:46884356-46884375 Msa1328870:CDS 15.0%
!! TGTATTAAAAAAGGAATTAA+CGG - chr8_4:46884412-46884431 Msa1328870:CDS 15.0%
!!! ATTTTTGTTTACATAAGAAT+AGG - chr8_4:46884512-46884531 Msa1328870:CDS 15.0%
!!! TTTTTGTTTACATAAGAATA+GGG - chr8_4:46884513-46884532 Msa1328870:CDS 15.0%
!! TATCAATTATGTGAAGTTTA+GGG + chr8_4:46883420-46883439 None:intergenic 20.0%
!! ATATCAATTATGTGAAGTTT+AGG + chr8_4:46883421-46883440 None:intergenic 20.0%
!!! CATATTTTGATCAATGAAAA+AGG + chr8_4:46884336-46884355 None:intergenic 20.0%
!! TTGATCAAAATATGTAAGTT+TGG - chr8_4:46884342-46884361 Msa1328870:CDS 20.0%
!!! GTAAGTTTGGTAATTAATTT+AGG - chr8_4:46884355-46884374 Msa1328870:CDS 20.0%
!!! AAGTTTGGTAATTAATTTAG+GGG - chr8_4:46884357-46884376 Msa1328870:CDS 20.0%
!!! AACGGAGTAAAATATTTTTT+TGG - chr8_4:46884430-46884449 Msa1328870:CDS 20.0%
!!! ACGGAGTAAAATATTTTTTT+GGG - chr8_4:46884431-46884450 Msa1328870:CDS 20.0%
!! TATCAATTATGTGAAGTTTA+GGG + chr8_4:46883420-46883439 None:intergenic 20.0%
!! ATATCAATTATGTGAAGTTT+AGG + chr8_4:46883421-46883440 None:intergenic 20.0%
!!! CATATTTTGATCAATGAAAA+AGG + chr8_4:46884336-46884355 None:intergenic 20.0%
!! TTGATCAAAATATGTAAGTT+TGG - chr8_4:46884342-46884361 Msa1328870:CDS 20.0%
!!! GTAAGTTTGGTAATTAATTT+AGG - chr8_4:46884355-46884374 Msa1328870:CDS 20.0%
!!! AAGTTTGGTAATTAATTTAG+GGG - chr8_4:46884357-46884376 Msa1328870:CDS 20.0%
!!! AACGGAGTAAAATATTTTTT+TGG - chr8_4:46884430-46884449 Msa1328870:CDS 20.0%
!!! ACGGAGTAAAATATTTTTTT+GGG - chr8_4:46884431-46884450 Msa1328870:CDS 20.0%
!! CTTCAACAACTTTTATTACA+TGG - chr8_4:46882859-46882878 Msa1328870:three_prime_UTR 25.0%
! TATTAAAGAAGATGAAGCTT+TGG - chr8_4:46883678-46883697 Msa1328870:CDS 25.0%
! GCAAAGATATAAACAAATCA+CGG + chr8_4:46883753-46883772 None:intergenic 25.0%
!!! TTTAGAAGTTTGTTTTGGTT+CGG - chr8_4:46883822-46883841 Msa1328870:intron 25.0%
!!! GTTTTAAAGAGTGTTTAAGA+TGG - chr8_4:46883857-46883876 Msa1328870:intron 25.0%
!! GAGTAATTTTCACTGTTATA+TGG - chr8_4:46884307-46884326 Msa1328870:CDS 25.0%
! AGTATAAGAGGATTGATTAA+AGG - chr8_4:46884380-46884399 Msa1328870:CDS 25.0%
! GTATAAGAGGATTGATTAAA+GGG - chr8_4:46884381-46884400 Msa1328870:CDS 25.0%
!! GAGTTTGCTTGTATTAAAAA+AGG - chr8_4:46884403-46884422 Msa1328870:CDS 25.0%
!! CTTCAACAACTTTTATTACA+TGG - chr8_4:46882859-46882878 Msa1328870:three_prime_UTR 25.0%
! TATTAAAGAAGATGAAGCTT+TGG - chr8_4:46883678-46883697 Msa1328870:CDS 25.0%
! GCAAAGATATAAACAAATCA+CGG + chr8_4:46883753-46883772 None:intergenic 25.0%
!!! TTTAGAAGTTTGTTTTGGTT+CGG - chr8_4:46883822-46883841 Msa1328870:intron 25.0%
!!! GTTTTAAAGAGTGTTTAAGA+TGG - chr8_4:46883857-46883876 Msa1328870:intron 25.0%
!! GAGTAATTTTCACTGTTATA+TGG - chr8_4:46884307-46884326 Msa1328870:CDS 25.0%
! AGTATAAGAGGATTGATTAA+AGG - chr8_4:46884380-46884399 Msa1328870:CDS 25.0%
! GTATAAGAGGATTGATTAAA+GGG - chr8_4:46884381-46884400 Msa1328870:CDS 25.0%
!! GAGTTTGCTTGTATTAAAAA+AGG - chr8_4:46884403-46884422 Msa1328870:CDS 25.0%
! TTGATATGTTGTTTGTCTTG+AGG + chr8_4:46882807-46882826 None:intergenic 30.0%
!! TAAGTAGTGTTTGTTGTGTT+TGG + chr8_4:46882980-46882999 None:intergenic 30.0%
GAAAGAGTAATTATCAGTTG+TGG + chr8_4:46883023-46883042 None:intergenic 30.0%
TTCAAAGTTGAAGTAATCGT+GGG + chr8_4:46883053-46883072 None:intergenic 30.0%
ATTCAAAGTTGAAGTAATCG+TGG + chr8_4:46883054-46883073 None:intergenic 30.0%
TACTTCAACTTTGAATTCTC+CGG - chr8_4:46883058-46883077 Msa1328870:CDS 30.0%
CAAAAAGTCATGAAGGAAAT+CGG - chr8_4:46883559-46883578 Msa1328870:CDS 30.0%
AACTCTTTACATTCGATATC+CGG - chr8_4:46883715-46883734 Msa1328870:intron 30.0%
AAGATATAAACAAATCACGG+TGG + chr8_4:46883750-46883769 None:intergenic 30.0%
TTGTTTATATCTTTGCTTCG+TGG - chr8_4:46883757-46883776 Msa1328870:intron 30.0%
TGTTTATATCTTTGCTTCGT+GGG - chr8_4:46883758-46883777 Msa1328870:intron 30.0%
TCAACAATAGTTAAAACCCT+AGG + chr8_4:46883790-46883809 None:intergenic 30.0%
!!! GGTTTTAACTATTGTTGAAG+AGG - chr8_4:46883792-46883811 Msa1328870:intron 30.0%
!! GCTGATTTAGAAGTTTGTTT+TGG - chr8_4:46883817-46883836 Msa1328870:intron 30.0%
!! AAGAGTGTTTAAGATGGTTT+AGG - chr8_4:46883863-46883882 Msa1328870:CDS 30.0%
! AGAGTGTTTAAGATGGTTTA+GGG - chr8_4:46883864-46883883 Msa1328870:CDS 30.0%
! ATGAAGTTTGTGATGATGTT+AGG - chr8_4:46884079-46884098 Msa1328870:CDS 30.0%
! TGAAGTTTGTGATGATGTTA+GGG - chr8_4:46884080-46884099 Msa1328870:CDS 30.0%
! TTGTTGAGAAGGTATAAAGA+AGG - chr8_4:46884105-46884124 Msa1328870:CDS 30.0%
! TGTTGAGAAGGTATAAAGAA+GGG - chr8_4:46884106-46884125 Msa1328870:CDS 30.0%
!! ACACGTGCTCTAAATTTTAT+TGG - chr8_4:46884253-46884272 Msa1328870:CDS 30.0%
! TTAATTTAGGGGAGTATAAG+AGG - chr8_4:46884368-46884387 Msa1328870:CDS 30.0%
TTTACATAAGAATAGGGTTG+TGG - chr8_4:46884519-46884538 Msa1328870:CDS 30.0%
! TTGATATGTTGTTTGTCTTG+AGG + chr8_4:46882807-46882826 None:intergenic 30.0%
!! TAAGTAGTGTTTGTTGTGTT+TGG + chr8_4:46882980-46882999 None:intergenic 30.0%
GAAAGAGTAATTATCAGTTG+TGG + chr8_4:46883023-46883042 None:intergenic 30.0%
TTCAAAGTTGAAGTAATCGT+GGG + chr8_4:46883053-46883072 None:intergenic 30.0%
ATTCAAAGTTGAAGTAATCG+TGG + chr8_4:46883054-46883073 None:intergenic 30.0%
TACTTCAACTTTGAATTCTC+CGG - chr8_4:46883058-46883077 Msa1328870:CDS 30.0%
CAAAAAGTCATGAAGGAAAT+CGG - chr8_4:46883559-46883578 Msa1328870:CDS 30.0%
AACTCTTTACATTCGATATC+CGG - chr8_4:46883715-46883734 Msa1328870:intron 30.0%
AAGATATAAACAAATCACGG+TGG + chr8_4:46883750-46883769 None:intergenic 30.0%
TTGTTTATATCTTTGCTTCG+TGG - chr8_4:46883757-46883776 Msa1328870:intron 30.0%
TGTTTATATCTTTGCTTCGT+GGG - chr8_4:46883758-46883777 Msa1328870:intron 30.0%
TCAACAATAGTTAAAACCCT+AGG + chr8_4:46883790-46883809 None:intergenic 30.0%
!!! GGTTTTAACTATTGTTGAAG+AGG - chr8_4:46883792-46883811 Msa1328870:intron 30.0%
!! GCTGATTTAGAAGTTTGTTT+TGG - chr8_4:46883817-46883836 Msa1328870:intron 30.0%
!! AAGAGTGTTTAAGATGGTTT+AGG - chr8_4:46883863-46883882 Msa1328870:CDS 30.0%
! AGAGTGTTTAAGATGGTTTA+GGG - chr8_4:46883864-46883883 Msa1328870:CDS 30.0%
! ATGAAGTTTGTGATGATGTT+AGG - chr8_4:46884079-46884098 Msa1328870:CDS 30.0%
! TGAAGTTTGTGATGATGTTA+GGG - chr8_4:46884080-46884099 Msa1328870:CDS 30.0%
! TTGTTGAGAAGGTATAAAGA+AGG - chr8_4:46884105-46884124 Msa1328870:CDS 30.0%
! TGTTGAGAAGGTATAAAGAA+GGG - chr8_4:46884106-46884125 Msa1328870:CDS 30.0%
!! ACACGTGCTCTAAATTTTAT+TGG - chr8_4:46884253-46884272 Msa1328870:CDS 30.0%
! TTAATTTAGGGGAGTATAAG+AGG - chr8_4:46884368-46884387 Msa1328870:CDS 30.0%
TTTACATAAGAATAGGGTTG+TGG - chr8_4:46884519-46884538 Msa1328870:CDS 30.0%
ATTCTTCGTCTTCTTCTTGT+TGG + chr8_4:46882838-46882857 None:intergenic 35.0%
!! GTGTTGTTTAGAAGAAGATG+AGG + chr8_4:46882915-46882934 None:intergenic 35.0%
!! ATAGTAGTAGTGGATGCATA+AGG + chr8_4:46882950-46882969 None:intergenic 35.0%
AGTAATTATCAGTTGTGGTG+GGG + chr8_4:46883018-46883037 None:intergenic 35.0%
GAGTAATTATCAGTTGTGGT+GGG + chr8_4:46883019-46883038 None:intergenic 35.0%
AGAGTAATTATCAGTTGTGG+TGG + chr8_4:46883020-46883039 None:intergenic 35.0%
!! GCTATCTTAGAAGCATTAGA+AGG - chr8_4:46883391-46883410 Msa1328870:CDS 35.0%
! CAAGGATGGAAAAATTTGCT+AGG - chr8_4:46883584-46883603 Msa1328870:CDS 35.0%
!! GAAAAATTTGCTAGGCTCAT+GGG - chr8_4:46883592-46883611 Msa1328870:CDS 35.0%
TTTCAAGAACAAGTAGTGAG+AGG - chr8_4:46883914-46883933 Msa1328870:CDS 35.0%
!! TGGAAGAGGTATTGTTGATT+TGG - chr8_4:46883957-46883976 Msa1328870:CDS 35.0%
ATTCTTCGTCTTCTTCTTGT+TGG + chr8_4:46882838-46882857 None:intergenic 35.0%
!! GTGTTGTTTAGAAGAAGATG+AGG + chr8_4:46882915-46882934 None:intergenic 35.0%
!! ATAGTAGTAGTGGATGCATA+AGG + chr8_4:46882950-46882969 None:intergenic 35.0%
AGTAATTATCAGTTGTGGTG+GGG + chr8_4:46883018-46883037 None:intergenic 35.0%
GAGTAATTATCAGTTGTGGT+GGG + chr8_4:46883019-46883038 None:intergenic 35.0%
AGAGTAATTATCAGTTGTGG+TGG + chr8_4:46883020-46883039 None:intergenic 35.0%
!! GCTATCTTAGAAGCATTAGA+AGG - chr8_4:46883391-46883410 Msa1328870:CDS 35.0%
! CAAGGATGGAAAAATTTGCT+AGG - chr8_4:46883584-46883603 Msa1328870:CDS 35.0%
!! GAAAAATTTGCTAGGCTCAT+GGG - chr8_4:46883592-46883611 Msa1328870:CDS 35.0%
TTTCAAGAACAAGTAGTGAG+AGG - chr8_4:46883914-46883933 Msa1328870:CDS 35.0%
!! TGGAAGAGGTATTGTTGATT+TGG - chr8_4:46883957-46883976 Msa1328870:CDS 35.0%
AGAGCTGCTAGAAGTTGTTA+AGG + chr8_4:46882780-46882799 None:intergenic 40.0%
TGGAGTAGTGATAGTAGTAG+TGG + chr8_4:46882960-46882979 None:intergenic 40.0%
GTAATTATCAGTTGTGGTGG+GGG + chr8_4:46883017-46883036 None:intergenic 40.0%
AAGTTGAAGTAATCGTGGGA+GGG + chr8_4:46883049-46883068 None:intergenic 40.0%
AAAGTTGAAGTAATCGTGGG+AGG + chr8_4:46883050-46883069 None:intergenic 40.0%
! GATTCGGTTTGTGTTGTTGT+CGG + chr8_4:46883131-46883150 None:intergenic 40.0%
TCCACATGAGTTGTTGGATT+CGG + chr8_4:46883147-46883166 None:intergenic 40.0%
TTAGCATCCACATGAGTTGT+TGG + chr8_4:46883153-46883172 None:intergenic 40.0%
TTTGATCTGTGTCACCGTAT+GGG + chr8_4:46883189-46883208 None:intergenic 40.0%
! TTTTGATCTGTGTCACCGTA+TGG + chr8_4:46883190-46883209 None:intergenic 40.0%
AGTTCCAAGAAGTTAGTCCA+TGG - chr8_4:46883338-46883357 Msa1328870:CDS 40.0%
! TTGTCCATGGACTAACTTCT+TGG + chr8_4:46883345-46883364 None:intergenic 40.0%
GCAACACTTATTGCACTCAA+TGG - chr8_4:46883443-46883462 Msa1328870:CDS 40.0%
TGGTGACAACAGTGGTTAAA+CGG + chr8_4:46883519-46883538 None:intergenic 40.0%
! TCATGAAGGAAATCGGTTCA+AGG - chr8_4:46883566-46883585 Msa1328870:CDS 40.0%
!! GGAAAAATTTGCTAGGCTCA+TGG - chr8_4:46883591-46883610 Msa1328870:CDS 40.0%
AAACAAATCACGGTGGTTTC+CGG + chr8_4:46883743-46883762 None:intergenic 40.0%
!!! TTGTTTTGGTTCGGATTTCG+TGG - chr8_4:46883831-46883850 Msa1328870:intron 40.0%
TTGATGCTAGAAAGAGAAGC+TGG - chr8_4:46883937-46883956 Msa1328870:CDS 40.0%
TTGTGACCCTTATGAGTCAA+TGG - chr8_4:46883984-46884003 Msa1328870:CDS 40.0%
!! GTCTCTCCATTGACTCATAA+GGG + chr8_4:46883993-46884012 None:intergenic 40.0%
!! ATGTTAGGGCTTTGTTGAGA+AGG - chr8_4:46884094-46884113 Msa1328870:CDS 40.0%
! TGAGAAGGTATAAAGAAGGG+TGG - chr8_4:46884109-46884128 Msa1328870:CDS 40.0%
CTTCCACGACAAGAATATTC+CGG + chr8_4:46884166-46884185 None:intergenic 40.0%
! ATTTTATTGGCACGTGCGTT+TGG - chr8_4:46884266-46884285 Msa1328870:CDS 40.0%
! TTTTATTGGCACGTGCGTTT+GGG - chr8_4:46884267-46884286 Msa1328870:CDS 40.0%
AGAGCTGCTAGAAGTTGTTA+AGG + chr8_4:46882780-46882799 None:intergenic 40.0%
TGGAGTAGTGATAGTAGTAG+TGG + chr8_4:46882960-46882979 None:intergenic 40.0%
GTAATTATCAGTTGTGGTGG+GGG + chr8_4:46883017-46883036 None:intergenic 40.0%
AAGTTGAAGTAATCGTGGGA+GGG + chr8_4:46883049-46883068 None:intergenic 40.0%
AAAGTTGAAGTAATCGTGGG+AGG + chr8_4:46883050-46883069 None:intergenic 40.0%
! GATTCGGTTTGTGTTGTTGT+CGG + chr8_4:46883131-46883150 None:intergenic 40.0%
TCCACATGAGTTGTTGGATT+CGG + chr8_4:46883147-46883166 None:intergenic 40.0%
TTAGCATCCACATGAGTTGT+TGG + chr8_4:46883153-46883172 None:intergenic 40.0%
TTTGATCTGTGTCACCGTAT+GGG + chr8_4:46883189-46883208 None:intergenic 40.0%
! TTTTGATCTGTGTCACCGTA+TGG + chr8_4:46883190-46883209 None:intergenic 40.0%
AGTTCCAAGAAGTTAGTCCA+TGG - chr8_4:46883338-46883357 Msa1328870:CDS 40.0%
! TTGTCCATGGACTAACTTCT+TGG + chr8_4:46883345-46883364 None:intergenic 40.0%
GCAACACTTATTGCACTCAA+TGG - chr8_4:46883443-46883462 Msa1328870:CDS 40.0%
TGGTGACAACAGTGGTTAAA+CGG + chr8_4:46883519-46883538 None:intergenic 40.0%
! TCATGAAGGAAATCGGTTCA+AGG - chr8_4:46883566-46883585 Msa1328870:CDS 40.0%
!! GGAAAAATTTGCTAGGCTCA+TGG - chr8_4:46883591-46883610 Msa1328870:CDS 40.0%
AAACAAATCACGGTGGTTTC+CGG + chr8_4:46883743-46883762 None:intergenic 40.0%
!!! TTGTTTTGGTTCGGATTTCG+TGG - chr8_4:46883831-46883850 Msa1328870:intron 40.0%
TTGATGCTAGAAAGAGAAGC+TGG - chr8_4:46883937-46883956 Msa1328870:CDS 40.0%
TTGTGACCCTTATGAGTCAA+TGG - chr8_4:46883984-46884003 Msa1328870:CDS 40.0%
!! GTCTCTCCATTGACTCATAA+GGG + chr8_4:46883993-46884012 None:intergenic 40.0%
!! ATGTTAGGGCTTTGTTGAGA+AGG - chr8_4:46884094-46884113 Msa1328870:CDS 40.0%
! TGAGAAGGTATAAAGAAGGG+TGG - chr8_4:46884109-46884128 Msa1328870:CDS 40.0%
CTTCCACGACAAGAATATTC+CGG + chr8_4:46884166-46884185 None:intergenic 40.0%
! ATTTTATTGGCACGTGCGTT+TGG - chr8_4:46884266-46884285 Msa1328870:CDS 40.0%
! TTTTATTGGCACGTGCGTTT+GGG - chr8_4:46884267-46884286 Msa1328870:CDS 40.0%
! AGAAGTTGTTAAGGTGGTGG+TGG + chr8_4:46882771-46882790 None:intergenic 45.0%
GCTAGAAGTTGTTAAGGTGG+TGG + chr8_4:46882774-46882793 None:intergenic 45.0%
GCTGCTAGAAGTTGTTAAGG+TGG + chr8_4:46882777-46882796 None:intergenic 45.0%
TTGAATTCTCCGGCAACTCA+TGG - chr8_4:46883068-46883087 Msa1328870:CDS 45.0%
! GTTTTGTGACCATGAGTTGC+CGG + chr8_4:46883080-46883099 None:intergenic 45.0%
AAAATGCACGTGCGGTTTCA+AGG + chr8_4:46883108-46883127 None:intergenic 45.0%
ACCGAATCCAACAACTCATG+TGG - chr8_4:46883143-46883162 Msa1328870:CDS 45.0%
AACGAGCTTAGTTCCCCATA+CGG - chr8_4:46883172-46883191 Msa1328870:CDS 45.0%
TTGATCTGTGTCACCGTATG+GGG + chr8_4:46883188-46883207 None:intergenic 45.0%
!! CGCGGATGTTAAGGTTTTGT+AGG + chr8_4:46883272-46883291 None:intergenic 45.0%
CAAAACCTTAACATCCGCGT+CGG - chr8_4:46883273-46883292 Msa1328870:CDS 45.0%
! TTTTTCCGACGCGGATGTTA+AGG + chr8_4:46883281-46883300 None:intergenic 45.0%
!!! GGAACATGTTTTTTCCGACG+CGG + chr8_4:46883290-46883309 None:intergenic 45.0%
CATGTTCCTTCGATTCAACG+AGG - chr8_4:46883302-46883321 Msa1328870:CDS 45.0%
CATCTTCCTCGTTGAATCGA+AGG + chr8_4:46883311-46883330 None:intergenic 45.0%
GTTAGTCCATGGACAACGTT+TGG - chr8_4:46883349-46883368 Msa1328870:CDS 45.0%
!! TGCTTCTAAGATAGCACCGT+TGG + chr8_4:46883386-46883405 None:intergenic 45.0%
TGACAACAGTGGTTAAACGG+AGG + chr8_4:46883516-46883535 None:intergenic 45.0%
! CTCGGTGCAAAAAGTCATGA+AGG - chr8_4:46883552-46883571 Msa1328870:CDS 45.0%
! GAAGGAAATCGGTTCAAGGA+TGG - chr8_4:46883570-46883589 Msa1328870:CDS 45.0%
TTACATTCGATATCCGGAGC+CGG - chr8_4:46883721-46883740 Msa1328870:intron 45.0%
!! TTTGGTTCGGATTTCGTGGA+AGG - chr8_4:46883835-46883854 Msa1328870:intron 45.0%
CTAGAAAGAGAAGCTGGAAG+AGG - chr8_4:46883943-46883962 Msa1328870:CDS 45.0%
!! CGTCTCTCCATTGACTCATA+AGG + chr8_4:46883994-46884013 None:intergenic 45.0%
!! GCATGGTGGTGGGTTTAATA+CGG - chr8_4:46884044-46884063 Msa1328870:CDS 45.0%
GAATATTCCGGCATCACCAT+CGG + chr8_4:46884154-46884173 None:intergenic 45.0%
ATGCCGGAATATTCTTGTCG+TGG - chr8_4:46884160-46884179 Msa1328870:CDS 45.0%
CGGAATATTCTTGTCGTGGA+AGG - chr8_4:46884164-46884183 Msa1328870:CDS 45.0%
! AGAAGTTGTTAAGGTGGTGG+TGG + chr8_4:46882771-46882790 None:intergenic 45.0%
GCTAGAAGTTGTTAAGGTGG+TGG + chr8_4:46882774-46882793 None:intergenic 45.0%
GCTGCTAGAAGTTGTTAAGG+TGG + chr8_4:46882777-46882796 None:intergenic 45.0%
TTGAATTCTCCGGCAACTCA+TGG - chr8_4:46883068-46883087 Msa1328870:CDS 45.0%
! GTTTTGTGACCATGAGTTGC+CGG + chr8_4:46883080-46883099 None:intergenic 45.0%
AAAATGCACGTGCGGTTTCA+AGG + chr8_4:46883108-46883127 None:intergenic 45.0%
ACCGAATCCAACAACTCATG+TGG - chr8_4:46883143-46883162 Msa1328870:CDS 45.0%
AACGAGCTTAGTTCCCCATA+CGG - chr8_4:46883172-46883191 Msa1328870:CDS 45.0%
TTGATCTGTGTCACCGTATG+GGG + chr8_4:46883188-46883207 None:intergenic 45.0%
!! CGCGGATGTTAAGGTTTTGT+AGG + chr8_4:46883272-46883291 None:intergenic 45.0%
CAAAACCTTAACATCCGCGT+CGG - chr8_4:46883273-46883292 Msa1328870:CDS 45.0%
! TTTTTCCGACGCGGATGTTA+AGG + chr8_4:46883281-46883300 None:intergenic 45.0%
!!! GGAACATGTTTTTTCCGACG+CGG + chr8_4:46883290-46883309 None:intergenic 45.0%
CATGTTCCTTCGATTCAACG+AGG - chr8_4:46883302-46883321 Msa1328870:CDS 45.0%
CATCTTCCTCGTTGAATCGA+AGG + chr8_4:46883311-46883330 None:intergenic 45.0%
GTTAGTCCATGGACAACGTT+TGG - chr8_4:46883349-46883368 Msa1328870:CDS 45.0%
!! TGCTTCTAAGATAGCACCGT+TGG + chr8_4:46883386-46883405 None:intergenic 45.0%
TGACAACAGTGGTTAAACGG+AGG + chr8_4:46883516-46883535 None:intergenic 45.0%
! CTCGGTGCAAAAAGTCATGA+AGG - chr8_4:46883552-46883571 Msa1328870:CDS 45.0%
! GAAGGAAATCGGTTCAAGGA+TGG - chr8_4:46883570-46883589 Msa1328870:CDS 45.0%
TTACATTCGATATCCGGAGC+CGG - chr8_4:46883721-46883740 Msa1328870:intron 45.0%
!! TTTGGTTCGGATTTCGTGGA+AGG - chr8_4:46883835-46883854 Msa1328870:intron 45.0%
CTAGAAAGAGAAGCTGGAAG+AGG - chr8_4:46883943-46883962 Msa1328870:CDS 45.0%
!! CGTCTCTCCATTGACTCATA+AGG + chr8_4:46883994-46884013 None:intergenic 45.0%
!! GCATGGTGGTGGGTTTAATA+CGG - chr8_4:46884044-46884063 Msa1328870:CDS 45.0%
GAATATTCCGGCATCACCAT+CGG + chr8_4:46884154-46884173 None:intergenic 45.0%
ATGCCGGAATATTCTTGTCG+TGG - chr8_4:46884160-46884179 Msa1328870:CDS 45.0%
CGGAATATTCTTGTCGTGGA+AGG - chr8_4:46884164-46884183 Msa1328870:CDS 45.0%
!!! AAAATAATTTTGAATTTAAA+CGG + chr8_4:46883622-46883641 None:intergenic 5.0%
!!! AAAATAATTTTGAATTTAAA+CGG + chr8_4:46883622-46883641 None:intergenic 5.0%
!! GTGGAGTTGATGGAAGGATC+AGG + chr8_4:46882752-46882771 None:intergenic 50.0%
!! TAAGGTGGTGGTGGAGTTGA+TGG + chr8_4:46882762-46882781 None:intergenic 50.0%
GTTGTCGGAAAATGCACGTG+CGG + chr8_4:46883116-46883135 None:intergenic 50.0%
GTTTAGTCGCATGAACGACG+CGG - chr8_4:46883237-46883256 Msa1328870:CDS 50.0%
TTTAGTCGCATGAACGACGC+GGG - chr8_4:46883238-46883257 Msa1328870:CDS 50.0%
ACGTGTCCAAACGTTGTCCA+TGG + chr8_4:46883358-46883377 None:intergenic 50.0%
ATGGACAACGTTTGGACACG+TGG - chr8_4:46883357-46883376 Msa1328870:CDS 50.0%
ACAGTGGTTAAACGGAGGTG+AGG + chr8_4:46883511-46883530 None:intergenic 50.0%
ACTGTTGTCACCACAGTCAG+CGG - chr8_4:46883526-46883545 Msa1328870:CDS 50.0%
!! TGCTTCGTGGGTTAGAACCT+AGG - chr8_4:46883770-46883789 Msa1328870:intron 50.0%
!! GCTTCGTGGGTTAGAACCTA+GGG - chr8_4:46883771-46883790 Msa1328870:intron 50.0%
AGAGACGTGAAACAGCGTCA+CGG - chr8_4:46884007-46884026 Msa1328870:CDS 50.0%
ATGACACAGTGTTCCTCCGA+TGG - chr8_4:46884135-46884154 Msa1328870:CDS 50.0%
CTTGTCGTGGAAGGATAAGC+CGG - chr8_4:46884173-46884192 Msa1328870:CDS 50.0%
! CACGTGCGTTTGGGATTCAT+TGG - chr8_4:46884276-46884295 Msa1328870:CDS 50.0%
!! GTGGAGTTGATGGAAGGATC+AGG + chr8_4:46882752-46882771 None:intergenic 50.0%
!! TAAGGTGGTGGTGGAGTTGA+TGG + chr8_4:46882762-46882781 None:intergenic 50.0%
GTTGTCGGAAAATGCACGTG+CGG + chr8_4:46883116-46883135 None:intergenic 50.0%
GTTTAGTCGCATGAACGACG+CGG - chr8_4:46883237-46883256 Msa1328870:CDS 50.0%
TTTAGTCGCATGAACGACGC+GGG - chr8_4:46883238-46883257 Msa1328870:CDS 50.0%
ACGTGTCCAAACGTTGTCCA+TGG + chr8_4:46883358-46883377 None:intergenic 50.0%
ATGGACAACGTTTGGACACG+TGG - chr8_4:46883357-46883376 Msa1328870:CDS 50.0%
ACAGTGGTTAAACGGAGGTG+AGG + chr8_4:46883511-46883530 None:intergenic 50.0%
ACTGTTGTCACCACAGTCAG+CGG - chr8_4:46883526-46883545 Msa1328870:CDS 50.0%
!! TGCTTCGTGGGTTAGAACCT+AGG - chr8_4:46883770-46883789 Msa1328870:intron 50.0%
!! GCTTCGTGGGTTAGAACCTA+GGG - chr8_4:46883771-46883790 Msa1328870:intron 50.0%
AGAGACGTGAAACAGCGTCA+CGG - chr8_4:46884007-46884026 Msa1328870:CDS 50.0%
ATGACACAGTGTTCCTCCGA+TGG - chr8_4:46884135-46884154 Msa1328870:CDS 50.0%
CTTGTCGTGGAAGGATAAGC+CGG - chr8_4:46884173-46884192 Msa1328870:CDS 50.0%
! CACGTGCGTTTGGGATTCAT+TGG - chr8_4:46884276-46884295 Msa1328870:CDS 50.0%
!! GTGGTGGTGGAGTTGATGGA+AGG + chr8_4:46882758-46882777 None:intergenic 55.0%
ATGCACGTGCGGTTTCAAGG+AGG + chr8_4:46883105-46883124 None:intergenic 55.0%
TTTGGACACGTGGCAGCCAA+CGG - chr8_4:46883367-46883386 Msa1328870:CDS 55.0%
ACGGAGGTGAGGCGTATCAT+CGG + chr8_4:46883500-46883519 None:intergenic 55.0%
GCTGACTGTGGTGACAACAG+TGG + chr8_4:46883527-46883546 None:intergenic 55.0%
! TGTTCCTCCGATGGTGATGC+CGG - chr8_4:46884144-46884163 Msa1328870:CDS 55.0%
TATTCCGGCATCACCATCGG+AGG + chr8_4:46884151-46884170 None:intergenic 55.0%
GAAGGATAAGCCGGTGGTGT+GGG - chr8_4:46884182-46884201 Msa1328870:CDS 55.0%
ACCTCAAGGCCTCCATACAC+TGG + chr8_4:46884208-46884227 None:intergenic 55.0%
AGTGTATGGAGGCCTTGAGG+TGG - chr8_4:46884207-46884226 Msa1328870:CDS 55.0%
!! GTGGTGGTGGAGTTGATGGA+AGG + chr8_4:46882758-46882777 None:intergenic 55.0%
ATGCACGTGCGGTTTCAAGG+AGG + chr8_4:46883105-46883124 None:intergenic 55.0%
TTTGGACACGTGGCAGCCAA+CGG - chr8_4:46883367-46883386 Msa1328870:CDS 55.0%
ACGGAGGTGAGGCGTATCAT+CGG + chr8_4:46883500-46883519 None:intergenic 55.0%
GCTGACTGTGGTGACAACAG+TGG + chr8_4:46883527-46883546 None:intergenic 55.0%
! TGTTCCTCCGATGGTGATGC+CGG - chr8_4:46884144-46884163 Msa1328870:CDS 55.0%
TATTCCGGCATCACCATCGG+AGG + chr8_4:46884151-46884170 None:intergenic 55.0%
GAAGGATAAGCCGGTGGTGT+GGG - chr8_4:46884182-46884201 Msa1328870:CDS 55.0%
ACCTCAAGGCCTCCATACAC+TGG + chr8_4:46884208-46884227 None:intergenic 55.0%
AGTGTATGGAGGCCTTGAGG+TGG - chr8_4:46884207-46884226 Msa1328870:CDS 55.0%
GCCAACACTCCTCGAAGCGT+TGG - chr8_4:46883465-46883484 Msa1328870:CDS 60.0%
! GCCAACGCTTCGAGGAGTGT+TGG + chr8_4:46883469-46883488 None:intergenic 60.0%
GTGAGGCGTATCATCGGAGC+GGG + chr8_4:46883494-46883513 None:intergenic 60.0%
GGTGAGGCGTATCATCGGAG+CGG + chr8_4:46883495-46883514 None:intergenic 60.0%
GTTGTCACCACAGTCAGCGG+TGG - chr8_4:46883529-46883548 Msa1328870:CDS 60.0%
ATCACGGTGGTTTCCGGCTC+CGG + chr8_4:46883737-46883756 None:intergenic 60.0%
GACGTGAAACAGCGTCACGG+TGG - chr8_4:46884010-46884029 Msa1328870:CDS 60.0%
GTGAAACAGCGTCACGGTGG+AGG - chr8_4:46884013-46884032 Msa1328870:intron 60.0%
AAACAGCGTCACGGTGGAGG+AGG - chr8_4:46884016-46884035 Msa1328870:intron 60.0%
TGGAGGAGGAGGTTGCATGG+TGG - chr8_4:46884030-46884049 Msa1328870:intron 60.0%
AGGAGGAGGTTGCATGGTGG+TGG - chr8_4:46884033-46884052 Msa1328870:intron 60.0%
GGAGGAGGTTGCATGGTGGT+GGG - chr8_4:46884034-46884053 Msa1328870:intron 60.0%
GTCGTGGAAGGATAAGCCGG+TGG - chr8_4:46884176-46884195 Msa1328870:CDS 60.0%
GGAAGGATAAGCCGGTGGTG+TGG - chr8_4:46884181-46884200 Msa1328870:CDS 60.0%
CATACACTGGCCCACACCAC+CGG + chr8_4:46884195-46884214 None:intergenic 60.0%
TGGTGTGGGCCAGTGTATGG+AGG - chr8_4:46884196-46884215 Msa1328870:CDS 60.0%
GCCAGTGTATGGAGGCCTTG+AGG - chr8_4:46884204-46884223 Msa1328870:CDS 60.0%
!! AGGTGGCGCTGACATGGCAT+GGG - chr8_4:46884224-46884243 Msa1328870:CDS 60.0%
GCCAACACTCCTCGAAGCGT+TGG - chr8_4:46883465-46883484 Msa1328870:CDS 60.0%
! GCCAACGCTTCGAGGAGTGT+TGG + chr8_4:46883469-46883488 None:intergenic 60.0%
GTGAGGCGTATCATCGGAGC+GGG + chr8_4:46883494-46883513 None:intergenic 60.0%
GGTGAGGCGTATCATCGGAG+CGG + chr8_4:46883495-46883514 None:intergenic 60.0%
GTTGTCACCACAGTCAGCGG+TGG - chr8_4:46883529-46883548 Msa1328870:CDS 60.0%
ATCACGGTGGTTTCCGGCTC+CGG + chr8_4:46883737-46883756 None:intergenic 60.0%
GACGTGAAACAGCGTCACGG+TGG - chr8_4:46884010-46884029 Msa1328870:CDS 60.0%
GTGAAACAGCGTCACGGTGG+AGG - chr8_4:46884013-46884032 Msa1328870:intron 60.0%
AAACAGCGTCACGGTGGAGG+AGG - chr8_4:46884016-46884035 Msa1328870:intron 60.0%
TGGAGGAGGAGGTTGCATGG+TGG - chr8_4:46884030-46884049 Msa1328870:intron 60.0%
AGGAGGAGGTTGCATGGTGG+TGG - chr8_4:46884033-46884052 Msa1328870:intron 60.0%
GGAGGAGGTTGCATGGTGGT+GGG - chr8_4:46884034-46884053 Msa1328870:intron 60.0%
GTCGTGGAAGGATAAGCCGG+TGG - chr8_4:46884176-46884195 Msa1328870:CDS 60.0%
GGAAGGATAAGCCGGTGGTG+TGG - chr8_4:46884181-46884200 Msa1328870:CDS 60.0%
CATACACTGGCCCACACCAC+CGG + chr8_4:46884195-46884214 None:intergenic 60.0%
TGGTGTGGGCCAGTGTATGG+AGG - chr8_4:46884196-46884215 Msa1328870:CDS 60.0%
GCCAGTGTATGGAGGCCTTG+AGG - chr8_4:46884204-46884223 Msa1328870:CDS 60.0%
!! AGGTGGCGCTGACATGGCAT+GGG - chr8_4:46884224-46884243 Msa1328870:CDS 60.0%
AGGCGTATCATCGGAGCGGG+TGG + chr8_4:46883491-46883510 None:intergenic 65.0%
CACCACAGTCAGCGGTGGCT+CGG - chr8_4:46883534-46883553 Msa1328870:CDS 65.0%
CGGTGGAGGAGGAGGTTGCA+TGG - chr8_4:46884027-46884046 Msa1328870:intron 65.0%
CGGTGGTGTGGGCCAGTGTA+TGG - chr8_4:46884193-46884212 Msa1328870:CDS 65.0%
!! GCCTTGAGGTGGCGCTGACA+TGG - chr8_4:46884218-46884237 Msa1328870:CDS 65.0%
GCCATGTCAGCGCCACCTCA+AGG + chr8_4:46884222-46884241 None:intergenic 65.0%
!! GAGGTGGCGCTGACATGGCA+TGG - chr8_4:46884223-46884242 Msa1328870:CDS 65.0%
AGGCGTATCATCGGAGCGGG+TGG + chr8_4:46883491-46883510 None:intergenic 65.0%
CACCACAGTCAGCGGTGGCT+CGG - chr8_4:46883534-46883553 Msa1328870:CDS 65.0%
CGGTGGAGGAGGAGGTTGCA+TGG - chr8_4:46884027-46884046 Msa1328870:intron 65.0%
CGGTGGTGTGGGCCAGTGTA+TGG - chr8_4:46884193-46884212 Msa1328870:CDS 65.0%
!! GCCTTGAGGTGGCGCTGACA+TGG - chr8_4:46884218-46884237 Msa1328870:CDS 65.0%
GCCATGTCAGCGCCACCTCA+AGG + chr8_4:46884222-46884241 None:intergenic 65.0%
!! GAGGTGGCGCTGACATGGCA+TGG - chr8_4:46884223-46884242 Msa1328870:CDS 65.0%
AGCGGGTGGCCAACGCTTCG+AGG + chr8_4:46883477-46883496 None:intergenic 70.0%
! CACCGAGCCACCGCTGACTG+TGG + chr8_4:46883539-46883558 None:intergenic 70.0%
CAGCGTCACGGTGGAGGAGG+AGG - chr8_4:46884019-46884038 Msa1328870:intron 70.0%
AGCGGGTGGCCAACGCTTCG+AGG + chr8_4:46883477-46883496 None:intergenic 70.0%
! CACCGAGCCACCGCTGACTG+TGG + chr8_4:46883539-46883558 None:intergenic 70.0%
CAGCGTCACGGTGGAGGAGG+AGG - chr8_4:46884019-46884038 Msa1328870:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 46882716 46884558 46882716 ID=Msa1328870;Name=Msa1328870
chr8_4 mRNA 46882716 46884558 46882716 ID=Msa1328870-mRNA-1;Parent=Msa1328870;Name=Msa1328870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.33|1|0|0|3|334|457
chr8_4 exon 46882716 46883732 46882716 ID=Msa1328870-mRNA-1:exon:13430;Parent=Msa1328870-mRNA-1
chr8_4 exon 46883862 46884031 46883862 ID=Msa1328870-mRNA-1:exon:13429;Parent=Msa1328870-mRNA-1
chr8_4 exon 46884038 46884558 46884038 ID=Msa1328870-mRNA-1:exon:13428;Parent=Msa1328870-mRNA-1
chr8_4 CDS 46884038 46884558 46884038 ID=Msa1328870-mRNA-1:cds;Parent=Msa1328870-mRNA-1
chr8_4 CDS 46883862 46884031 46883862 ID=Msa1328870-mRNA-1:cds;Parent=Msa1328870-mRNA-1
chr8_4 CDS 46883050 46883732 46883050 ID=Msa1328870-mRNA-1:cds;Parent=Msa1328870-mRNA-1
chr8_4 three_prime_UTR 46882716 46883049 46882716 ID=Msa1328870-mRNA-1:three_prime_utr;Parent=Msa1328870-mRNA-1
Gene Sequence

>Msa1328870

CTTGTCAATTTTCAACAACAACAACAATATCAACCTGATCCTTCCATCAACTCCACCACCACCTTAACAACTTCTAGCAGCTCTAGATCCTCAAGACAAACAACATATCAATATTACAACCAACAAGAAGAAGACGAAGAATGCTTCAACAACTTTTATTACATGGATCATAATAACAACAATGATGAAGATTTATCCTCATCTTCTTCTAAACAACACTATTATACTTATCCTTATGCATCCACTACTACTATCACTACTCCAAACACAACAAACACTACTTATAATACTATCAACACCCCCACCACAACTGATAATTACTCTTTCTCACCCTCCCACGATTACTTCAACTTTGAATTCTCCGGCAACTCATGGTCACAAAACATCCTCCTTGAAACCGCACGTGCATTTTCCGACAACAACACAAACCGAATCCAACAACTCATGTGGATGCTAAACGAGCTTAGTTCCCCATACGGTGACACAGATCAAAAACTTTCTTCTTATTTTCTTCAAGCTTTTCGCATGAACGACGCGGGAGATAGAACCTACAAAACCTTAACATCCGCGTCGGAAAAAACATGTTCCTTCGATTCAACGAGGAAGATGTTGTTGAAGTTCCAAGAAGTTAGTCCATGGACAACGTTTGGACACGTGGCAGCCAACGGTGCTATCTTAGAAGCATTAGAAGTCAGCGGTGGCTCGGTGCAAAAAGTCATGAAGGAAATCGGTTCAAGGATGGAAAAATTTGCTAGGCTCATGGGAGTGCCGTTTAAATTCAAAATTATTTTCAGTGATTTAAGAGAGTTGAATTTGTGTGATTTAGATATTAAAGAAGATGAAGCTTTGGCTATAAATTGTGTAAACTCTTTACATTCGATATCCGGAGCCGGAAACCACCGTGATTTGTTTATATCTTTGCTTCGTGGGTTAGAACCTAGGGTTTTAACTATTGTTGAAGAGGAAGCTGATTTAGAAGTTTGTTTTGGTTCGGATTTCGTGGAAGGTTTTAAAGAGTGTTTAAGATGGTTTAGGGTTTATTTTGAAGCACTTGATGAAAGTTTTTCAAGAACAAGTAGTGAGAGGTTGATGCTAGAAAGAGAAGCTGGAAGAGGTATTGTTGATTTGGTTGCTTGTGACCCTTATGAGTCAATGGAGAGACGTGAAACAGCGTCACGGTGGAGGAGGAGGTTGCATGGTGGTGGGTTTAATACGGTGTCGTTTAGTGATGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAAAGAAGGGTGGTCGATGACACAGTGTTCCTCCGATGGTGATGCCGGAATATTCTTGTCGTGGAAGGATAAGCCGGTGGTGTGGGCCAGTGTATGGAGGCCTTGA

Protein sequence

>Msa1328870

LVNFQQQQQYQPDPSINSTTTLTTSSSSRSSRQTTYQYYNQQEEDEECFNNFYYMDHNNNNDEDLSSSSSKQHYYTYPYASTTTITTPNTTNTTYNTINTPTTTDNYSFSPSHDYFNFEFSGNSWSQNILLETARAFSDNNTNRIQQLMWMLNELSSPYGDTDQKLSSYFLQAFRMNDAGDRTYKTLTSASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEVSGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESMERRETASRWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTQCSSDGDAGIFLSWKDKPVVWASVWRP*