AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297070 MtrunA17_Chr5g0401131 60.156 512 122 15 1 457 7 491 0.0 525
Msa1297070 MtrunA17_Chr4g0054071 93.133 233 10 3 1 230 7 236 1.39e-115 339
Msa1297070 MtrunA17_Chr2g0329591 43.614 415 166 10 99 457 50 452 1.62e-104 318
Msa1297070 MtrunA17_Chr5g0445331 27.225 382 218 9 127 456 159 532 3.66e-41 154
Msa1297070 MtrunA17_Chr1g0159461 27.368 380 216 10 127 456 223 592 7.83e-40 151
Msa1297070 MtrunA17_Chr5g0447691 26.579 380 219 9 127 456 175 544 4.38e-39 148
Msa1297070 MtrunA17_Chr2g0319091 26.893 383 214 9 127 456 210 579 1.21e-37 144
Msa1297070 MtrunA17_Chr3g0101141 25.126 398 222 10 117 456 163 542 4.16e-36 140
Msa1297070 MtrunA17_Chr3g0125811 26.053 380 221 10 127 456 201 570 4.51e-36 140
Msa1297070 MtrunA17_Chr7g0224271 26.615 387 214 11 128 456 299 673 1.24e-34 137
Msa1297070 MtrunA17_Chr4g0053901 23.899 477 262 10 72 457 3 469 3.43e-34 133
Msa1297070 MtrunA17_Chr5g0401421 24.249 433 226 10 118 457 24 447 1.14e-32 129
Msa1297070 MtrunA17_Chr2g0290241 26.124 356 203 10 151 456 80 425 3.85e-32 127
Msa1297070 MtrunA17_Chr4g0076091 25.393 382 220 11 127 455 173 542 1.26e-31 127
Msa1297070 MtrunA17_Chr8g0344101 27.318 399 206 13 125 456 219 600 1.00e-29 122
Msa1297070 MtrunA17_Chr7g0245601 24.595 370 218 13 132 457 441 793 1.19e-26 113
Msa1297070 MtrunA17_Chr4g0057291 23.238 383 231 10 128 457 291 663 5.64e-26 111
Msa1297070 MtrunA17_Chr4g0039661 25.729 377 215 9 130 456 194 555 1.11e-25 109
Msa1297070 MtrunA17_Chr8g0376381 23.387 372 221 9 130 456 170 522 1.81e-25 108
Msa1297070 MtrunA17_Chr3g0110971 23.560 382 223 8 130 456 220 587 1.82e-25 109
Msa1297070 MtrunA17_Chr2g0328341 23.873 377 230 12 129 457 272 639 4.47e-24 105
Msa1297070 MtrunA17_Chr2g0328391 25.722 381 226 9 127 457 297 670 5.99e-24 105
Msa1297070 MtrunA17_Chr4g0038761 24.599 374 217 15 132 457 87 443 7.16e-23 100
Msa1297070 MtrunA17_Chr2g0328381 22.222 387 224 12 129 457 275 642 2.30e-22 100
Msa1297070 MtrunA17_Chr7g0236851 27.869 244 162 5 218 455 421 656 2.70e-22 100
Msa1297070 MtrunA17_Chr4g0057891 22.597 385 228 10 129 456 149 520 1.20e-21 97.4
Msa1297070 MtrunA17_Chr4g0031701 24.147 381 225 12 127 453 252 622 1.75e-21 97.4
Msa1297070 MtrunA17_Chr4g0031711 22.977 383 236 8 127 457 359 734 1.77e-21 97.8
Msa1297070 MtrunA17_Chr4g0031721 23.298 382 232 11 127 457 314 685 3.06e-21 97.1
Msa1297070 MtrunA17_Chr4g0031741 23.947 380 226 12 129 457 284 651 3.43e-21 96.7
Msa1297070 MtrunA17_Chr8g0357601 24.274 379 226 14 130 456 183 552 5.24e-21 95.9
Msa1297070 MtrunA17_Chr2g0323111 29.348 184 118 4 279 457 131 307 5.38e-21 93.6
Msa1297070 MtrunA17_Chr2g0306641 23.167 341 197 10 165 456 163 487 7.30e-21 95.1
Msa1297070 MtrunA17_Chr4g0031731 23.360 381 228 10 127 453 252 622 6.41e-20 92.8
Msa1297070 MtrunA17_Chr7g0238891 21.164 378 245 8 127 457 370 741 4.37e-19 90.1
Msa1297070 MtrunA17_Chr2g0328411 22.546 377 230 12 129 455 289 653 5.44e-19 90.1
Msa1297070 MtrunA17_Chr2g0328401 21.893 338 217 8 129 422 290 624 2.28e-18 87.8
Msa1297070 MtrunA17_Chr1g0183641 24.259 371 220 13 129 455 123 476 3.69e-18 86.7
Msa1297070 MtrunA17_Chr2g0328431 22.812 377 233 11 129 457 289 655 1.56e-17 85.5
Msa1297070 MtrunA17_Chr6g0468561 24.365 394 212 15 126 456 292 662 1.01e-15 79.7
Msa1297070 MtrunA17_Chr1g0200401 24.378 402 210 14 128 456 79 459 1.73e-15 78.6
Msa1297070 MtrunA17_Chr1g0194621 24.255 235 168 5 226 456 290 518 3.40e-15 77.8
Msa1297070 MtrunA17_Chr3g0085681 28.395 162 108 4 296 456 282 436 6.55e-15 76.6
Msa1297070 MtrunA17_Chr3g0085361 27.778 162 108 3 296 456 197 350 6.59e-14 72.8
Msa1297070 MtrunA17_Chr7g0270031 23.207 237 173 5 224 456 323 554 4.80e-13 71.2
Msa1297070 MtrunA17_Chr3g0114841 23.454 388 230 13 128 455 119 499 8.71e-13 70.1
Msa1297070 MtrunA17_Chr5g0396491 29.677 155 100 4 304 456 331 478 2.10e-12 68.9
Msa1297070 MtrunA17_Chr2g0328371 26.699 206 132 8 213 405 49 248 7.34e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297070 AT4G37650.1 50.595 504 159 13 33 457 38 530 7.51e-152 442
Msa1297070 AT2G04890.1 27.763 371 215 7 129 456 53 413 7.47e-44 159
Msa1297070 AT1G50600.3 26.402 428 244 11 83 456 116 526 1.47e-40 152
Msa1297070 AT1G50600.1 26.402 428 244 11 83 456 187 597 3.16e-40 152
Msa1297070 AT1G50600.2 26.402 428 244 11 83 456 191 601 3.60e-40 152
Msa1297070 AT1G21450.1 28.571 399 204 13 119 456 215 593 5.75e-38 146
Msa1297070 AT3G49950.1 28.316 392 210 11 127 457 28 409 6.13e-36 137
Msa1297070 AT5G48150.1 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1297070 AT5G48150.4 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1297070 AT5G48150.2 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1297070 AT5G48150.3 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1297070 AT1G66350.1 27.446 368 209 10 130 456 156 506 2.80e-31 126
Msa1297070 AT3G03450.1 24.603 378 222 8 128 456 182 545 7.38e-31 125
Msa1297070 AT4G17230.1 23.958 384 226 10 127 457 156 526 1.82e-30 124
Msa1297070 AT4G17230.2 23.958 384 226 10 127 457 156 526 1.82e-30 124
Msa1297070 AT5G17490.1 25.538 372 216 8 130 456 161 516 1.74e-29 121
Msa1297070 AT2G29060.2 24.582 419 240 13 101 457 252 656 5.43e-26 111
Msa1297070 AT2G29060.1 24.582 419 240 13 101 457 289 693 6.50e-26 111
Msa1297070 AT3G54220.1 25.201 373 215 14 132 457 296 651 1.71e-25 110
Msa1297070 AT1G14920.1 24.528 371 222 9 130 456 173 529 4.40e-25 108
Msa1297070 AT2G01570.1 22.911 371 228 9 130 456 225 581 1.49e-23 103
Msa1297070 AT2G37650.2 23.670 376 236 10 127 457 333 702 5.75e-23 102
Msa1297070 AT2G37650.1 23.670 376 236 10 127 457 345 714 5.84e-23 102
Msa1297070 AT1G07530.1 22.835 381 236 8 127 457 394 766 1.85e-22 101
Msa1297070 AT3G13840.1 25.131 382 221 14 125 456 144 510 2.85e-22 99.8
Msa1297070 AT5G52510.1 25.856 263 179 6 199 456 389 640 3.02e-22 100
Msa1297070 AT5G66770.1 24.865 370 216 9 137 456 227 584 9.39e-22 98.6
Msa1297070 AT2G29065.1 22.338 385 240 11 127 457 250 629 9.47e-22 98.6
Msa1297070 AT1G63100.2 24.870 386 224 13 128 455 276 653 2.56e-20 94.4
Msa1297070 AT1G63100.1 24.870 386 224 13 128 455 251 628 3.62e-20 94.0
Msa1297070 AT1G50420.1 22.248 436 220 11 128 456 56 479 1.21e-19 91.7
Msa1297070 AT5G41920.1 24.000 375 223 13 128 456 42 400 3.09e-19 89.7
Msa1297070 AT3G50650.1 24.069 349 201 8 160 456 206 542 3.60e-19 90.5
Msa1297070 AT3G46600.1 22.105 380 238 7 127 457 210 580 2.71e-18 87.8
Msa1297070 AT3G46600.2 22.105 380 238 7 127 457 2 372 2.73e-18 86.7
Msa1297070 AT1G55580.1 25.061 411 216 15 129 456 44 445 3.13e-18 87.0
Msa1297070 AT3G46600.3 22.105 380 238 7 127 457 178 548 5.29e-18 87.0
Msa1297070 AT5G59450.1 21.932 383 239 9 127 457 225 599 1.16e-16 83.2
Msa1297070 AT4G08250.1 24.832 298 167 9 207 455 187 476 4.27e-12 68.6

Find 119 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGTTTGGTAATTAATTT+AGG 0.118478 8_3:+57001087 Msa1297070:three_prime_UTR
AGTATAAGAGGATTGATTAA+AGG 0.252023 8_3:+57001112 Msa1297070:three_prime_UTR
AAACAAATCACGGTGGTTTC+CGG 0.257711 8_3:-57000472 None:intergenic
AAGAGTGTTTAAGATGGTTT+AGG 0.258495 8_3:+57000595 Msa1297070:CDS
ATTCTTCGTCTTCTTCTTGT+TGG 0.301725 8_3:-56999567 None:intergenic
TTGATCAAAATATATAAGTT+TGG 0.318808 8_3:+57001074 Msa1297070:three_prime_UTR
TAAGTTTGGTAATTAATTTA+GGG 0.321407 8_3:+57001088 Msa1297070:three_prime_UTR
AGGAGGAGGTTGCATGGTGG+TGG 0.328666 8_3:+57000765 Msa1297070:CDS
TTGTCCATGGACTAACTTCT+TGG 0.329314 8_3:-57000074 None:intergenic
TAAGTAGTGTTTGTTGTGTT+TGG 0.339821 8_3:-56999709 None:intergenic
ATGAAGTTTGTGATGATGTT+AGG 0.345281 8_3:+57000811 Msa1297070:CDS
GCTGATTTAGAAGTTTGTTT+TGG 0.347659 8_3:+57000549 Msa1297070:CDS
TAAGGTGGTGGTGGAGTTGA+TGG 0.368817 8_3:-56999491 None:intergenic
AGAGTGTTTAAGATGGTTTA+GGG 0.373474 8_3:+57000596 Msa1297070:CDS
TGGAAGAGGTATTGTTGATT+TGG 0.374691 8_3:+57000689 Msa1297070:CDS
CACGTGCGTTTGGGATTCAT+TGG 0.375500 8_3:+57001008 Msa1297070:three_prime_UTR
ATCACGGTGGTTTCCGGCTC+CGG 0.383080 8_3:-57000466 None:intergenic
GTATAAGAGGATTGATTAAA+GGG 0.383571 8_3:+57001113 Msa1297070:three_prime_UTR
AACTCTTTACATTCGATATC+CGG 0.397888 8_3:+57000447 Msa1297070:CDS
TCCACATGAGTTGTTGGATT+CGG 0.400997 8_3:-56999876 None:intergenic
CGTCTCTCCATTGACTCATA+AGG 0.404423 8_3:-57000723 None:intergenic
TACTTCAACTTTGAATTCTC+CGG 0.412778 8_3:+56999790 Msa1297070:CDS
GTTAGTCCATGGACAACGTT+TGG 0.420735 8_3:+57000081 Msa1297070:CDS
AAAATGCACGTGCGGTTTCA+AGG 0.430548 8_3:-56999837 None:intergenic
CGGTGGTGTGGGCCAGTGTA+TGG 0.430711 8_3:+57000925 Msa1297070:CDS
CTTCCACGACAAGAATATTC+CGG 0.431546 8_3:-57000895 None:intergenic
GCATGGTGGTGGGTTTAATA+CGG 0.431980 8_3:+57000776 Msa1297070:CDS
GGAGGAGGTTGCATGGTGGT+GGG 0.435450 8_3:+57000766 Msa1297070:CDS
TATTAAAGAAGATGAAGCTT+TGG 0.437246 8_3:+57000410 Msa1297070:CDS
TTAATTTAGGGGAGTATAAG+AGG 0.440289 8_3:+57001100 Msa1297070:three_prime_UTR
TGTTTATATCTTTGCTTCGT+GGG 0.441689 8_3:+57000490 Msa1297070:CDS
TTAGCATCCACATGAGTTGT+TGG 0.445709 8_3:-56999882 None:intergenic
TTTACATAAGAATAGGGTTG+TGG 0.448203 8_3:+57001251 Msa1297070:three_prime_UTR
TTGTTTATATCTTTGCTTCG+TGG 0.451946 8_3:+57000489 Msa1297070:CDS
GCCTTGAGGTGGCGCTGACA+TGG 0.452766 8_3:+57000950 Msa1297070:exon
CACCACAGTCAGCGGTGGCT+CGG 0.457207 8_3:+57000266 Msa1297070:intron
TGCTTCGTGGGTTAGAACCT+AGG 0.461690 8_3:+57000502 Msa1297070:CDS
CAGCGTCACGGTGGAGGAGG+AGG 0.463327 8_3:+57000751 Msa1297070:CDS
GTGGAGTTGATGGAAGGATC+AGG 0.465751 8_3:-56999481 None:intergenic
TTTGGTTCGGATTTCGTGGA+AGG 0.470121 8_3:+57000567 Msa1297070:CDS
TGAAGTTTGTGATGATGTTA+GGG 0.470148 8_3:+57000812 Msa1297070:CDS
GATTCGGTTTGTGTTGTTGT+CGG 0.471253 8_3:-56999860 None:intergenic
GCTATCTTAGAAGCATTAGA+AGG 0.474912 8_3:+57000123 Msa1297070:CDS
GTCTCTCCATTGACTCATAA+GGG 0.477366 8_3:-57000722 None:intergenic
ATGTTAGGGCTTTGTTGAGA+AGG 0.482294 8_3:+57000826 Msa1297070:CDS
AGAGCTGCTAGAAGTTGTTA+AGG 0.490994 8_3:-56999509 None:intergenic
TCATGAAGGAAATCGGTTCA+AGG 0.493998 8_3:+57000298 Msa1297070:CDS
TTGAATTCTCCGGCAACTCA+TGG 0.501115 8_3:+56999800 Msa1297070:CDS
GCTTCGTGGGTTAGAACCTA+GGG 0.504275 8_3:+57000503 Msa1297070:CDS
GTAATTATCAGTTGTGGTGG+GGG 0.506791 8_3:-56999746 None:intergenic
TTGATGCTAGAAAGAGAAGC+TGG 0.507592 8_3:+57000669 Msa1297070:CDS
GAGGTGGCGCTGACATGGCA+TGG 0.508114 8_3:+57000955 Msa1297070:exon
ATAGTAGTAGTGGATGCATA+AGG 0.510603 8_3:-56999679 None:intergenic
AGAGTAATTATCAGTTGTGG+TGG 0.511198 8_3:-56999749 None:intergenic
TGTTCCTCCGATGGTGATGC+CGG 0.512206 8_3:+57000876 Msa1297070:CDS
GAGTAATTATCAGTTGTGGT+GGG 0.513221 8_3:-56999748 None:intergenic
TTTGATCTGTGTCACCGTAT+GGG 0.514015 8_3:-56999918 None:intergenic
CGGTGGAGGAGGAGGTTGCA+TGG 0.514673 8_3:+57000759 Msa1297070:CDS
GAAGGATAAGCCGGTGGTGT+GGG 0.516813 8_3:+57000914 Msa1297070:CDS
GGAAGGATAAGCCGGTGGTG+TGG 0.518070 8_3:+57000913 Msa1297070:CDS
CGGAATATTCTTGTCGTGGA+AGG 0.518332 8_3:+57000896 Msa1297070:CDS
CTAGAAAGAGAAGCTGGAAG+AGG 0.518793 8_3:+57000675 Msa1297070:CDS
AAACAGCGTCACGGTGGAGG+AGG 0.519490 8_3:+57000748 Msa1297070:CDS
CATACACTGGCCCACACCAC+CGG 0.526670 8_3:-57000924 None:intergenic
TTGATCTGTGTCACCGTATG+GGG 0.527505 8_3:-56999917 None:intergenic
TTGTTGAGAAGGTATAAAGA+AGG 0.530989 8_3:+57000837 Msa1297070:CDS
AGAAGTTGTTAAGGTGGTGG+TGG 0.532155 8_3:-56999500 None:intergenic
ACCTCAAGGCCTCCATACAC+TGG 0.532917 8_3:-57000937 None:intergenic
TGCTTCTAAGATAGCACCGT+TGG 0.532927 8_3:-57000115 None:intergenic
TCAACAATAGTTAAAACCCT+AGG 0.537053 8_3:-57000519 None:intergenic
GCCATGTCAGCGCCACCTCA+AGG 0.538008 8_3:-57000951 None:intergenic
TGTTGAGAAGGTATAAAGAA+GGG 0.543842 8_3:+57000838 Msa1297070:CDS
TTTAGTCGCATGAACGACGC+GGG 0.545808 8_3:+56999970 Msa1297070:intron
CATCTTCCTCGTTGAATCGA+AGG 0.549319 8_3:-57000040 None:intergenic
ACGTGTCCAAACGTTGTCCA+TGG 0.550032 8_3:-57000087 None:intergenic
AGTAATTATCAGTTGTGGTG+GGG 0.552091 8_3:-56999747 None:intergenic
GAAGGAAATCGGTTCAAGGA+TGG 0.552770 8_3:+57000302 Msa1297070:CDS
ATTCAAAGTTGAAGTAATCG+TGG 0.563080 8_3:-56999783 None:intergenic
TTGATATGTTGTTTGTCTTG+AGG 0.563090 8_3:-56999536 None:intergenic
TGGAGTAGTGATAGTAGTAG+TGG 0.565967 8_3:-56999689 None:intergenic
GCCAGTGTATGGAGGCCTTG+AGG 0.566308 8_3:+57000936 Msa1297070:CDS
TTGTGACCCTTATGAGTCAA+TGG 0.568784 8_3:+57000716 Msa1297070:CDS
GTGAAACAGCGTCACGGTGG+AGG 0.572256 8_3:+57000745 Msa1297070:CDS
GAATATTCCGGCATCACCAT+CGG 0.580354 8_3:-57000883 None:intergenic
TTTCAAGAACAAGTAGTGAG+AGG 0.582987 8_3:+57000646 Msa1297070:CDS
AGTTCCAAGAAGTTAGTCCA+TGG 0.584447 8_3:+57000070 Msa1297070:CDS
TTACATTCGATATCCGGAGC+CGG 0.585693 8_3:+57000453 Msa1297070:CDS
ATGGACAACGTTTGGACACG+TGG 0.586613 8_3:+57000089 Msa1297070:CDS
TTCAAAGTTGAAGTAATCGT+GGG 0.586851 8_3:-56999782 None:intergenic
ATGACACAGTGTTCCTCCGA+TGG 0.587322 8_3:+57000867 Msa1297070:CDS
TTTGGACACGTGGCAGCCAA+CGG 0.587329 8_3:+57000099 Msa1297070:CDS
CTTGTCGTGGAAGGATAAGC+CGG 0.587868 8_3:+57000905 Msa1297070:CDS
AGGTGGCGCTGACATGGCAT+GGG 0.590917 8_3:+57000956 Msa1297070:exon
GTTTAGTCGCATGAACGACG+CGG 0.592117 8_3:+56999969 Msa1297070:intron
AAGTTTGGTAATTAATTTAG+GGG 0.593455 8_3:+57001089 Msa1297070:three_prime_UTR
GTGTTGTTTAGAAGAAGATG+AGG 0.594437 8_3:-56999644 None:intergenic
GAAAGAGTAATTATCAGTTG+TGG 0.594879 8_3:-56999752 None:intergenic
GCAAAGATATAAACAAATCA+CGG 0.596997 8_3:-57000482 None:intergenic
TGGTGTGGGCCAGTGTATGG+AGG 0.609272 8_3:+57000928 Msa1297070:CDS
AGTGTATGGAGGCCTTGAGG+TGG 0.614107 8_3:+57000939 Msa1297070:exon
ATGCCGGAATATTCTTGTCG+TGG 0.614564 8_3:+57000892 Msa1297070:CDS
ACCGAATCCAACAACTCATG+TGG 0.616002 8_3:+56999875 Msa1297070:CDS
AACGAGCTTAGTTCCCCATA+CGG 0.616114 8_3:+56999904 Msa1297070:CDS
GTGGTGGTGGAGTTGATGGA+AGG 0.616191 8_3:-56999487 None:intergenic
GCTAGAAGTTGTTAAGGTGG+TGG 0.616229 8_3:-56999503 None:intergenic
AAGTTGAAGTAATCGTGGGA+GGG 0.628358 8_3:-56999778 None:intergenic
GCTGCTAGAAGTTGTTAAGG+TGG 0.637704 8_3:-56999506 None:intergenic
AAAGTTGAAGTAATCGTGGG+AGG 0.640378 8_3:-56999779 None:intergenic
TGAGAAGGTATAAAGAAGGG+TGG 0.652792 8_3:+57000841 Msa1297070:CDS
GTTGTCACCACAGTCAGCGG+TGG 0.658729 8_3:+57000261 Msa1297070:intron
CAAAACCTTAACATCCGCGT+CGG 0.669594 8_3:+57000005 Msa1297070:CDS
GTCGTGGAAGGATAAGCCGG+TGG 0.674105 8_3:+57000908 Msa1297070:CDS
TATTCCGGCATCACCATCGG+AGG 0.676733 8_3:-57000880 None:intergenic
CATGTTCCTTCGATTCAACG+AGG 0.690083 8_3:+57000034 Msa1297070:CDS
TGGAGGAGGAGGTTGCATGG+TGG 0.690855 8_3:+57000762 Msa1297070:CDS
GTTGTCGGAAAATGCACGTG+CGG 0.703618 8_3:-56999845 None:intergenic
AGAGACGTGAAACAGCGTCA+CGG 0.722636 8_3:+57000739 Msa1297070:CDS
ATGCACGTGCGGTTTCAAGG+AGG 0.744530 8_3:-56999834 None:intergenic
AAGATATAAACAAATCACGG+TGG 0.755243 8_3:-57000479 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTGATCAATGAAAA+AGG - chr8_3:57001068-57001087 None:intergenic 15.0%
!! TTGATCAAAATATATAAGTT+TGG + chr8_3:57001074-57001093 Msa1297070:three_prime_UTR 15.0%
!!! ATAAGTTTGGTAATTAATTT+AGG + chr8_3:57001087-57001106 Msa1297070:three_prime_UTR 15.0%
!!! TAAGTTTGGTAATTAATTTA+GGG + chr8_3:57001088-57001107 Msa1297070:three_prime_UTR 15.0%
!! TGTATTAAAAAAGGAATTAA+CGG + chr8_3:57001144-57001163 Msa1297070:three_prime_UTR 15.0%
!!! ATTTTTGTTTACATAAGAAT+AGG + chr8_3:57001244-57001263 Msa1297070:three_prime_UTR 15.0%
!!! TTTTTGTTTACATAAGAATA+GGG + chr8_3:57001245-57001264 Msa1297070:three_prime_UTR 15.0%
!!! TATATTTTGATCAATGAAAA+AGG - chr8_3:57001068-57001087 None:intergenic 15.0%
!! TTGATCAAAATATATAAGTT+TGG + chr8_3:57001074-57001093 Msa1297070:three_prime_UTR 15.0%
!!! ATAAGTTTGGTAATTAATTT+AGG + chr8_3:57001087-57001106 Msa1297070:three_prime_UTR 15.0%
!!! TAAGTTTGGTAATTAATTTA+GGG + chr8_3:57001088-57001107 Msa1297070:three_prime_UTR 15.0%
!! TGTATTAAAAAAGGAATTAA+CGG + chr8_3:57001144-57001163 Msa1297070:three_prime_UTR 15.0%
!!! ATTTTTGTTTACATAAGAAT+AGG + chr8_3:57001244-57001263 Msa1297070:three_prime_UTR 15.0%
!!! TTTTTGTTTACATAAGAATA+GGG + chr8_3:57001245-57001264 Msa1297070:three_prime_UTR 15.0%
!! TATCAATTATGTGAAGTTTA+GGG - chr8_3:57000152-57000171 None:intergenic 20.0%
!! ATATCAATTATGTGAAGTTT+AGG - chr8_3:57000153-57000172 None:intergenic 20.0%
!!! AAGTTTGGTAATTAATTTAG+GGG + chr8_3:57001089-57001108 Msa1297070:three_prime_UTR 20.0%
!!! AACGGAGTAAAATATTTTTT+TGG + chr8_3:57001162-57001181 Msa1297070:three_prime_UTR 20.0%
!!! ACGGAGTAAAATATTTTTTT+GGG + chr8_3:57001163-57001182 Msa1297070:three_prime_UTR 20.0%
!! TATCAATTATGTGAAGTTTA+GGG - chr8_3:57000152-57000171 None:intergenic 20.0%
!! ATATCAATTATGTGAAGTTT+AGG - chr8_3:57000153-57000172 None:intergenic 20.0%
!!! AAGTTTGGTAATTAATTTAG+GGG + chr8_3:57001089-57001108 Msa1297070:three_prime_UTR 20.0%
!!! AACGGAGTAAAATATTTTTT+TGG + chr8_3:57001162-57001181 Msa1297070:three_prime_UTR 20.0%
!!! ACGGAGTAAAATATTTTTTT+GGG + chr8_3:57001163-57001182 Msa1297070:three_prime_UTR 20.0%
!! CTTCAACAACTTTTATTACA+TGG + chr8_3:56999591-56999610 Msa1297070:CDS 25.0%
! TATTAAAGAAGATGAAGCTT+TGG + chr8_3:57000410-57000429 Msa1297070:CDS 25.0%
! GCAAAGATATAAACAAATCA+CGG - chr8_3:57000485-57000504 None:intergenic 25.0%
!!! TTTAGAAGTTTGTTTTGGTT+CGG + chr8_3:57000554-57000573 Msa1297070:CDS 25.0%
!!! GTTTTAAAGAGTGTTTAAGA+TGG + chr8_3:57000589-57000608 Msa1297070:CDS 25.0%
!! GAGTAATTTTCACTGTTATA+TGG + chr8_3:57001039-57001058 Msa1297070:three_prime_UTR 25.0%
! AGTATAAGAGGATTGATTAA+AGG + chr8_3:57001112-57001131 Msa1297070:three_prime_UTR 25.0%
! GTATAAGAGGATTGATTAAA+GGG + chr8_3:57001113-57001132 Msa1297070:three_prime_UTR 25.0%
!! GAGTTTGCTTGTATTAAAAA+AGG + chr8_3:57001135-57001154 Msa1297070:three_prime_UTR 25.0%
!! CTTCAACAACTTTTATTACA+TGG + chr8_3:56999591-56999610 Msa1297070:CDS 25.0%
! TATTAAAGAAGATGAAGCTT+TGG + chr8_3:57000410-57000429 Msa1297070:CDS 25.0%
! GCAAAGATATAAACAAATCA+CGG - chr8_3:57000485-57000504 None:intergenic 25.0%
!!! TTTAGAAGTTTGTTTTGGTT+CGG + chr8_3:57000554-57000573 Msa1297070:CDS 25.0%
!!! GTTTTAAAGAGTGTTTAAGA+TGG + chr8_3:57000589-57000608 Msa1297070:CDS 25.0%
!! GAGTAATTTTCACTGTTATA+TGG + chr8_3:57001039-57001058 Msa1297070:three_prime_UTR 25.0%
! AGTATAAGAGGATTGATTAA+AGG + chr8_3:57001112-57001131 Msa1297070:three_prime_UTR 25.0%
! GTATAAGAGGATTGATTAAA+GGG + chr8_3:57001113-57001132 Msa1297070:three_prime_UTR 25.0%
!! GAGTTTGCTTGTATTAAAAA+AGG + chr8_3:57001135-57001154 Msa1297070:three_prime_UTR 25.0%
! TTGATATGTTGTTTGTCTTG+AGG - chr8_3:56999539-56999558 None:intergenic 30.0%
!! TAAGTAGTGTTTGTTGTGTT+TGG - chr8_3:56999712-56999731 None:intergenic 30.0%
GAAAGAGTAATTATCAGTTG+TGG - chr8_3:56999755-56999774 None:intergenic 30.0%
TTCAAAGTTGAAGTAATCGT+GGG - chr8_3:56999785-56999804 None:intergenic 30.0%
ATTCAAAGTTGAAGTAATCG+TGG - chr8_3:56999786-56999805 None:intergenic 30.0%
TACTTCAACTTTGAATTCTC+CGG + chr8_3:56999790-56999809 Msa1297070:CDS 30.0%
CAAAAAGTCATGAAGGAAAT+CGG + chr8_3:57000291-57000310 Msa1297070:CDS 30.0%
AACTCTTTACATTCGATATC+CGG + chr8_3:57000447-57000466 Msa1297070:CDS 30.0%
AAGATATAAACAAATCACGG+TGG - chr8_3:57000482-57000501 None:intergenic 30.0%
TTGTTTATATCTTTGCTTCG+TGG + chr8_3:57000489-57000508 Msa1297070:CDS 30.0%
TGTTTATATCTTTGCTTCGT+GGG + chr8_3:57000490-57000509 Msa1297070:CDS 30.0%
TCAACAATAGTTAAAACCCT+AGG - chr8_3:57000522-57000541 None:intergenic 30.0%
!!! GGTTTTAACTATTGTTGAAG+AGG + chr8_3:57000524-57000543 Msa1297070:CDS 30.0%
!! GCTGATTTAGAAGTTTGTTT+TGG + chr8_3:57000549-57000568 Msa1297070:CDS 30.0%
!! AAGAGTGTTTAAGATGGTTT+AGG + chr8_3:57000595-57000614 Msa1297070:CDS 30.0%
! AGAGTGTTTAAGATGGTTTA+GGG + chr8_3:57000596-57000615 Msa1297070:CDS 30.0%
! ATGAAGTTTGTGATGATGTT+AGG + chr8_3:57000811-57000830 Msa1297070:CDS 30.0%
! TGAAGTTTGTGATGATGTTA+GGG + chr8_3:57000812-57000831 Msa1297070:CDS 30.0%
! TTGTTGAGAAGGTATAAAGA+AGG + chr8_3:57000837-57000856 Msa1297070:CDS 30.0%
! TGTTGAGAAGGTATAAAGAA+GGG + chr8_3:57000838-57000857 Msa1297070:CDS 30.0%
!! ACACGTGCTCTAAATTTTAT+TGG + chr8_3:57000985-57001004 Msa1297070:three_prime_UTR 30.0%
! TTAATTTAGGGGAGTATAAG+AGG + chr8_3:57001100-57001119 Msa1297070:three_prime_UTR 30.0%
TTTACATAAGAATAGGGTTG+TGG + chr8_3:57001251-57001270 Msa1297070:three_prime_UTR 30.0%
! TTGATATGTTGTTTGTCTTG+AGG - chr8_3:56999539-56999558 None:intergenic 30.0%
!! TAAGTAGTGTTTGTTGTGTT+TGG - chr8_3:56999712-56999731 None:intergenic 30.0%
GAAAGAGTAATTATCAGTTG+TGG - chr8_3:56999755-56999774 None:intergenic 30.0%
TTCAAAGTTGAAGTAATCGT+GGG - chr8_3:56999785-56999804 None:intergenic 30.0%
ATTCAAAGTTGAAGTAATCG+TGG - chr8_3:56999786-56999805 None:intergenic 30.0%
TACTTCAACTTTGAATTCTC+CGG + chr8_3:56999790-56999809 Msa1297070:CDS 30.0%
CAAAAAGTCATGAAGGAAAT+CGG + chr8_3:57000291-57000310 Msa1297070:CDS 30.0%
AACTCTTTACATTCGATATC+CGG + chr8_3:57000447-57000466 Msa1297070:CDS 30.0%
AAGATATAAACAAATCACGG+TGG - chr8_3:57000482-57000501 None:intergenic 30.0%
TTGTTTATATCTTTGCTTCG+TGG + chr8_3:57000489-57000508 Msa1297070:CDS 30.0%
TGTTTATATCTTTGCTTCGT+GGG + chr8_3:57000490-57000509 Msa1297070:CDS 30.0%
TCAACAATAGTTAAAACCCT+AGG - chr8_3:57000522-57000541 None:intergenic 30.0%
!!! GGTTTTAACTATTGTTGAAG+AGG + chr8_3:57000524-57000543 Msa1297070:CDS 30.0%
!! GCTGATTTAGAAGTTTGTTT+TGG + chr8_3:57000549-57000568 Msa1297070:CDS 30.0%
!! AAGAGTGTTTAAGATGGTTT+AGG + chr8_3:57000595-57000614 Msa1297070:CDS 30.0%
! AGAGTGTTTAAGATGGTTTA+GGG + chr8_3:57000596-57000615 Msa1297070:CDS 30.0%
! ATGAAGTTTGTGATGATGTT+AGG + chr8_3:57000811-57000830 Msa1297070:CDS 30.0%
! TGAAGTTTGTGATGATGTTA+GGG + chr8_3:57000812-57000831 Msa1297070:CDS 30.0%
! TTGTTGAGAAGGTATAAAGA+AGG + chr8_3:57000837-57000856 Msa1297070:CDS 30.0%
! TGTTGAGAAGGTATAAAGAA+GGG + chr8_3:57000838-57000857 Msa1297070:CDS 30.0%
!! ACACGTGCTCTAAATTTTAT+TGG + chr8_3:57000985-57001004 Msa1297070:three_prime_UTR 30.0%
! TTAATTTAGGGGAGTATAAG+AGG + chr8_3:57001100-57001119 Msa1297070:three_prime_UTR 30.0%
TTTACATAAGAATAGGGTTG+TGG + chr8_3:57001251-57001270 Msa1297070:three_prime_UTR 30.0%
ATTCTTCGTCTTCTTCTTGT+TGG - chr8_3:56999570-56999589 None:intergenic 35.0%
!! GTGTTGTTTAGAAGAAGATG+AGG - chr8_3:56999647-56999666 None:intergenic 35.0%
!! ATAGTAGTAGTGGATGCATA+AGG - chr8_3:56999682-56999701 None:intergenic 35.0%
AGTAATTATCAGTTGTGGTG+GGG - chr8_3:56999750-56999769 None:intergenic 35.0%
GAGTAATTATCAGTTGTGGT+GGG - chr8_3:56999751-56999770 None:intergenic 35.0%
AGAGTAATTATCAGTTGTGG+TGG - chr8_3:56999752-56999771 None:intergenic 35.0%
!! GCTATCTTAGAAGCATTAGA+AGG + chr8_3:57000123-57000142 Msa1297070:CDS 35.0%
! CAAGGATGGAAAAATTTGCT+AGG + chr8_3:57000316-57000335 Msa1297070:CDS 35.0%
!! GAAAAATTTGCTAGGCTCAT+GGG + chr8_3:57000324-57000343 Msa1297070:CDS 35.0%
TTTCAAGAACAAGTAGTGAG+AGG + chr8_3:57000646-57000665 Msa1297070:CDS 35.0%
!! TGGAAGAGGTATTGTTGATT+TGG + chr8_3:57000689-57000708 Msa1297070:CDS 35.0%
ATTCTTCGTCTTCTTCTTGT+TGG - chr8_3:56999570-56999589 None:intergenic 35.0%
!! GTGTTGTTTAGAAGAAGATG+AGG - chr8_3:56999647-56999666 None:intergenic 35.0%
!! ATAGTAGTAGTGGATGCATA+AGG - chr8_3:56999682-56999701 None:intergenic 35.0%
AGTAATTATCAGTTGTGGTG+GGG - chr8_3:56999750-56999769 None:intergenic 35.0%
GAGTAATTATCAGTTGTGGT+GGG - chr8_3:56999751-56999770 None:intergenic 35.0%
AGAGTAATTATCAGTTGTGG+TGG - chr8_3:56999752-56999771 None:intergenic 35.0%
!! GCTATCTTAGAAGCATTAGA+AGG + chr8_3:57000123-57000142 Msa1297070:CDS 35.0%
! CAAGGATGGAAAAATTTGCT+AGG + chr8_3:57000316-57000335 Msa1297070:CDS 35.0%
!! GAAAAATTTGCTAGGCTCAT+GGG + chr8_3:57000324-57000343 Msa1297070:CDS 35.0%
TTTCAAGAACAAGTAGTGAG+AGG + chr8_3:57000646-57000665 Msa1297070:CDS 35.0%
!! TGGAAGAGGTATTGTTGATT+TGG + chr8_3:57000689-57000708 Msa1297070:CDS 35.0%
AGAGCTGCTAGAAGTTGTTA+AGG - chr8_3:56999512-56999531 None:intergenic 40.0%
TGGAGTAGTGATAGTAGTAG+TGG - chr8_3:56999692-56999711 None:intergenic 40.0%
GTAATTATCAGTTGTGGTGG+GGG - chr8_3:56999749-56999768 None:intergenic 40.0%
AAGTTGAAGTAATCGTGGGA+GGG - chr8_3:56999781-56999800 None:intergenic 40.0%
AAAGTTGAAGTAATCGTGGG+AGG - chr8_3:56999782-56999801 None:intergenic 40.0%
! GATTCGGTTTGTGTTGTTGT+CGG - chr8_3:56999863-56999882 None:intergenic 40.0%
TCCACATGAGTTGTTGGATT+CGG - chr8_3:56999879-56999898 None:intergenic 40.0%
TTAGCATCCACATGAGTTGT+TGG - chr8_3:56999885-56999904 None:intergenic 40.0%
TTTGATCTGTGTCACCGTAT+GGG - chr8_3:56999921-56999940 None:intergenic 40.0%
! TTTTGATCTGTGTCACCGTA+TGG - chr8_3:56999922-56999941 None:intergenic 40.0%
AGTTCCAAGAAGTTAGTCCA+TGG + chr8_3:57000070-57000089 Msa1297070:CDS 40.0%
! TTGTCCATGGACTAACTTCT+TGG - chr8_3:57000077-57000096 None:intergenic 40.0%
GCAACACTTATTGCACTCAA+TGG + chr8_3:57000175-57000194 Msa1297070:intron 40.0%
TGGTGACAACAGTGGTTAAA+CGG - chr8_3:57000251-57000270 None:intergenic 40.0%
! TCATGAAGGAAATCGGTTCA+AGG + chr8_3:57000298-57000317 Msa1297070:CDS 40.0%
!! GGAAAAATTTGCTAGGCTCA+TGG + chr8_3:57000323-57000342 Msa1297070:CDS 40.0%
AAACAAATCACGGTGGTTTC+CGG - chr8_3:57000475-57000494 None:intergenic 40.0%
!!! TTGTTTTGGTTCGGATTTCG+TGG + chr8_3:57000563-57000582 Msa1297070:CDS 40.0%
TTGATGCTAGAAAGAGAAGC+TGG + chr8_3:57000669-57000688 Msa1297070:CDS 40.0%
TTGTGACCCTTATGAGTCAA+TGG + chr8_3:57000716-57000735 Msa1297070:CDS 40.0%
!! GTCTCTCCATTGACTCATAA+GGG - chr8_3:57000725-57000744 None:intergenic 40.0%
!! ATGTTAGGGCTTTGTTGAGA+AGG + chr8_3:57000826-57000845 Msa1297070:CDS 40.0%
! TGAGAAGGTATAAAGAAGGG+TGG + chr8_3:57000841-57000860 Msa1297070:CDS 40.0%
CTTCCACGACAAGAATATTC+CGG - chr8_3:57000898-57000917 None:intergenic 40.0%
! ATTTTATTGGCACGTGCGTT+TGG + chr8_3:57000998-57001017 Msa1297070:three_prime_UTR 40.0%
! TTTTATTGGCACGTGCGTTT+GGG + chr8_3:57000999-57001018 Msa1297070:three_prime_UTR 40.0%
AGAGCTGCTAGAAGTTGTTA+AGG - chr8_3:56999512-56999531 None:intergenic 40.0%
TGGAGTAGTGATAGTAGTAG+TGG - chr8_3:56999692-56999711 None:intergenic 40.0%
GTAATTATCAGTTGTGGTGG+GGG - chr8_3:56999749-56999768 None:intergenic 40.0%
AAGTTGAAGTAATCGTGGGA+GGG - chr8_3:56999781-56999800 None:intergenic 40.0%
AAAGTTGAAGTAATCGTGGG+AGG - chr8_3:56999782-56999801 None:intergenic 40.0%
! GATTCGGTTTGTGTTGTTGT+CGG - chr8_3:56999863-56999882 None:intergenic 40.0%
TCCACATGAGTTGTTGGATT+CGG - chr8_3:56999879-56999898 None:intergenic 40.0%
TTAGCATCCACATGAGTTGT+TGG - chr8_3:56999885-56999904 None:intergenic 40.0%
TTTGATCTGTGTCACCGTAT+GGG - chr8_3:56999921-56999940 None:intergenic 40.0%
! TTTTGATCTGTGTCACCGTA+TGG - chr8_3:56999922-56999941 None:intergenic 40.0%
AGTTCCAAGAAGTTAGTCCA+TGG + chr8_3:57000070-57000089 Msa1297070:CDS 40.0%
! TTGTCCATGGACTAACTTCT+TGG - chr8_3:57000077-57000096 None:intergenic 40.0%
GCAACACTTATTGCACTCAA+TGG + chr8_3:57000175-57000194 Msa1297070:intron 40.0%
TGGTGACAACAGTGGTTAAA+CGG - chr8_3:57000251-57000270 None:intergenic 40.0%
! TCATGAAGGAAATCGGTTCA+AGG + chr8_3:57000298-57000317 Msa1297070:CDS 40.0%
!! GGAAAAATTTGCTAGGCTCA+TGG + chr8_3:57000323-57000342 Msa1297070:CDS 40.0%
AAACAAATCACGGTGGTTTC+CGG - chr8_3:57000475-57000494 None:intergenic 40.0%
!!! TTGTTTTGGTTCGGATTTCG+TGG + chr8_3:57000563-57000582 Msa1297070:CDS 40.0%
TTGATGCTAGAAAGAGAAGC+TGG + chr8_3:57000669-57000688 Msa1297070:CDS 40.0%
TTGTGACCCTTATGAGTCAA+TGG + chr8_3:57000716-57000735 Msa1297070:CDS 40.0%
!! GTCTCTCCATTGACTCATAA+GGG - chr8_3:57000725-57000744 None:intergenic 40.0%
!! ATGTTAGGGCTTTGTTGAGA+AGG + chr8_3:57000826-57000845 Msa1297070:CDS 40.0%
! TGAGAAGGTATAAAGAAGGG+TGG + chr8_3:57000841-57000860 Msa1297070:CDS 40.0%
CTTCCACGACAAGAATATTC+CGG - chr8_3:57000898-57000917 None:intergenic 40.0%
! ATTTTATTGGCACGTGCGTT+TGG + chr8_3:57000998-57001017 Msa1297070:three_prime_UTR 40.0%
! TTTTATTGGCACGTGCGTTT+GGG + chr8_3:57000999-57001018 Msa1297070:three_prime_UTR 40.0%
! AGAAGTTGTTAAGGTGGTGG+TGG - chr8_3:56999503-56999522 None:intergenic 45.0%
GCTAGAAGTTGTTAAGGTGG+TGG - chr8_3:56999506-56999525 None:intergenic 45.0%
GCTGCTAGAAGTTGTTAAGG+TGG - chr8_3:56999509-56999528 None:intergenic 45.0%
TTGAATTCTCCGGCAACTCA+TGG + chr8_3:56999800-56999819 Msa1297070:CDS 45.0%
! GTTTTGTGACCATGAGTTGC+CGG - chr8_3:56999812-56999831 None:intergenic 45.0%
AAAATGCACGTGCGGTTTCA+AGG - chr8_3:56999840-56999859 None:intergenic 45.0%
ACCGAATCCAACAACTCATG+TGG + chr8_3:56999875-56999894 Msa1297070:CDS 45.0%
AACGAGCTTAGTTCCCCATA+CGG + chr8_3:56999904-56999923 Msa1297070:CDS 45.0%
TTGATCTGTGTCACCGTATG+GGG - chr8_3:56999920-56999939 None:intergenic 45.0%
!! CGCGGATGTTAAGGTTTTGT+AGG - chr8_3:57000004-57000023 None:intergenic 45.0%
CAAAACCTTAACATCCGCGT+CGG + chr8_3:57000005-57000024 Msa1297070:CDS 45.0%
! TTTTTCCGACGCGGATGTTA+AGG - chr8_3:57000013-57000032 None:intergenic 45.0%
!!! GGAACATGTTTTTTCCGACG+CGG - chr8_3:57000022-57000041 None:intergenic 45.0%
CATGTTCCTTCGATTCAACG+AGG + chr8_3:57000034-57000053 Msa1297070:CDS 45.0%
CATCTTCCTCGTTGAATCGA+AGG - chr8_3:57000043-57000062 None:intergenic 45.0%
GTTAGTCCATGGACAACGTT+TGG + chr8_3:57000081-57000100 Msa1297070:CDS 45.0%
!! TGCTTCTAAGATAGCACCGT+TGG - chr8_3:57000118-57000137 None:intergenic 45.0%
TGACAACAGTGGTTAAACGG+AGG - chr8_3:57000248-57000267 None:intergenic 45.0%
! CTCGGTGCAAAAAGTCATGA+AGG + chr8_3:57000284-57000303 Msa1297070:CDS 45.0%
! GAAGGAAATCGGTTCAAGGA+TGG + chr8_3:57000302-57000321 Msa1297070:CDS 45.0%
TTACATTCGATATCCGGAGC+CGG + chr8_3:57000453-57000472 Msa1297070:CDS 45.0%
!! TTTGGTTCGGATTTCGTGGA+AGG + chr8_3:57000567-57000586 Msa1297070:CDS 45.0%
CTAGAAAGAGAAGCTGGAAG+AGG + chr8_3:57000675-57000694 Msa1297070:CDS 45.0%
!! CGTCTCTCCATTGACTCATA+AGG - chr8_3:57000726-57000745 None:intergenic 45.0%
!! GCATGGTGGTGGGTTTAATA+CGG + chr8_3:57000776-57000795 Msa1297070:CDS 45.0%
GAATATTCCGGCATCACCAT+CGG - chr8_3:57000886-57000905 None:intergenic 45.0%
ATGCCGGAATATTCTTGTCG+TGG + chr8_3:57000892-57000911 Msa1297070:CDS 45.0%
CGGAATATTCTTGTCGTGGA+AGG + chr8_3:57000896-57000915 Msa1297070:CDS 45.0%
! AGAAGTTGTTAAGGTGGTGG+TGG - chr8_3:56999503-56999522 None:intergenic 45.0%
GCTAGAAGTTGTTAAGGTGG+TGG - chr8_3:56999506-56999525 None:intergenic 45.0%
GCTGCTAGAAGTTGTTAAGG+TGG - chr8_3:56999509-56999528 None:intergenic 45.0%
TTGAATTCTCCGGCAACTCA+TGG + chr8_3:56999800-56999819 Msa1297070:CDS 45.0%
! GTTTTGTGACCATGAGTTGC+CGG - chr8_3:56999812-56999831 None:intergenic 45.0%
AAAATGCACGTGCGGTTTCA+AGG - chr8_3:56999840-56999859 None:intergenic 45.0%
ACCGAATCCAACAACTCATG+TGG + chr8_3:56999875-56999894 Msa1297070:CDS 45.0%
AACGAGCTTAGTTCCCCATA+CGG + chr8_3:56999904-56999923 Msa1297070:CDS 45.0%
TTGATCTGTGTCACCGTATG+GGG - chr8_3:56999920-56999939 None:intergenic 45.0%
!! CGCGGATGTTAAGGTTTTGT+AGG - chr8_3:57000004-57000023 None:intergenic 45.0%
CAAAACCTTAACATCCGCGT+CGG + chr8_3:57000005-57000024 Msa1297070:CDS 45.0%
! TTTTTCCGACGCGGATGTTA+AGG - chr8_3:57000013-57000032 None:intergenic 45.0%
!!! GGAACATGTTTTTTCCGACG+CGG - chr8_3:57000022-57000041 None:intergenic 45.0%
CATGTTCCTTCGATTCAACG+AGG + chr8_3:57000034-57000053 Msa1297070:CDS 45.0%
CATCTTCCTCGTTGAATCGA+AGG - chr8_3:57000043-57000062 None:intergenic 45.0%
GTTAGTCCATGGACAACGTT+TGG + chr8_3:57000081-57000100 Msa1297070:CDS 45.0%
!! TGCTTCTAAGATAGCACCGT+TGG - chr8_3:57000118-57000137 None:intergenic 45.0%
TGACAACAGTGGTTAAACGG+AGG - chr8_3:57000248-57000267 None:intergenic 45.0%
! CTCGGTGCAAAAAGTCATGA+AGG + chr8_3:57000284-57000303 Msa1297070:CDS 45.0%
! GAAGGAAATCGGTTCAAGGA+TGG + chr8_3:57000302-57000321 Msa1297070:CDS 45.0%
TTACATTCGATATCCGGAGC+CGG + chr8_3:57000453-57000472 Msa1297070:CDS 45.0%
!! TTTGGTTCGGATTTCGTGGA+AGG + chr8_3:57000567-57000586 Msa1297070:CDS 45.0%
CTAGAAAGAGAAGCTGGAAG+AGG + chr8_3:57000675-57000694 Msa1297070:CDS 45.0%
!! CGTCTCTCCATTGACTCATA+AGG - chr8_3:57000726-57000745 None:intergenic 45.0%
!! GCATGGTGGTGGGTTTAATA+CGG + chr8_3:57000776-57000795 Msa1297070:CDS 45.0%
GAATATTCCGGCATCACCAT+CGG - chr8_3:57000886-57000905 None:intergenic 45.0%
ATGCCGGAATATTCTTGTCG+TGG + chr8_3:57000892-57000911 Msa1297070:CDS 45.0%
CGGAATATTCTTGTCGTGGA+AGG + chr8_3:57000896-57000915 Msa1297070:CDS 45.0%
!!! AAAATAATTTTGAATTTAAA+CGG - chr8_3:57000354-57000373 None:intergenic 5.0%
!!! AAAATAATTTTGAATTTAAA+CGG - chr8_3:57000354-57000373 None:intergenic 5.0%
!! GTGGAGTTGATGGAAGGATC+AGG - chr8_3:56999484-56999503 None:intergenic 50.0%
!! TAAGGTGGTGGTGGAGTTGA+TGG - chr8_3:56999494-56999513 None:intergenic 50.0%
GTTGTCGGAAAATGCACGTG+CGG - chr8_3:56999848-56999867 None:intergenic 50.0%
GTTTAGTCGCATGAACGACG+CGG + chr8_3:56999969-56999988 Msa1297070:intron 50.0%
TTTAGTCGCATGAACGACGC+GGG + chr8_3:56999970-56999989 Msa1297070:intron 50.0%
ACGTGTCCAAACGTTGTCCA+TGG - chr8_3:57000090-57000109 None:intergenic 50.0%
ATGGACAACGTTTGGACACG+TGG + chr8_3:57000089-57000108 Msa1297070:CDS 50.0%
ACAGTGGTTAAACGGAGGTG+AGG - chr8_3:57000243-57000262 None:intergenic 50.0%
ACTGTTGTCACCACAGTCAG+CGG + chr8_3:57000258-57000277 Msa1297070:intron 50.0%
!! TGCTTCGTGGGTTAGAACCT+AGG + chr8_3:57000502-57000521 Msa1297070:CDS 50.0%
!! GCTTCGTGGGTTAGAACCTA+GGG + chr8_3:57000503-57000522 Msa1297070:CDS 50.0%
AGAGACGTGAAACAGCGTCA+CGG + chr8_3:57000739-57000758 Msa1297070:CDS 50.0%
ATGACACAGTGTTCCTCCGA+TGG + chr8_3:57000867-57000886 Msa1297070:CDS 50.0%
CTTGTCGTGGAAGGATAAGC+CGG + chr8_3:57000905-57000924 Msa1297070:CDS 50.0%
! CACGTGCGTTTGGGATTCAT+TGG + chr8_3:57001008-57001027 Msa1297070:three_prime_UTR 50.0%
!! GTGGAGTTGATGGAAGGATC+AGG - chr8_3:56999484-56999503 None:intergenic 50.0%
!! TAAGGTGGTGGTGGAGTTGA+TGG - chr8_3:56999494-56999513 None:intergenic 50.0%
GTTGTCGGAAAATGCACGTG+CGG - chr8_3:56999848-56999867 None:intergenic 50.0%
GTTTAGTCGCATGAACGACG+CGG + chr8_3:56999969-56999988 Msa1297070:intron 50.0%
TTTAGTCGCATGAACGACGC+GGG + chr8_3:56999970-56999989 Msa1297070:intron 50.0%
ACGTGTCCAAACGTTGTCCA+TGG - chr8_3:57000090-57000109 None:intergenic 50.0%
ATGGACAACGTTTGGACACG+TGG + chr8_3:57000089-57000108 Msa1297070:CDS 50.0%
ACAGTGGTTAAACGGAGGTG+AGG - chr8_3:57000243-57000262 None:intergenic 50.0%
ACTGTTGTCACCACAGTCAG+CGG + chr8_3:57000258-57000277 Msa1297070:intron 50.0%
!! TGCTTCGTGGGTTAGAACCT+AGG + chr8_3:57000502-57000521 Msa1297070:CDS 50.0%
!! GCTTCGTGGGTTAGAACCTA+GGG + chr8_3:57000503-57000522 Msa1297070:CDS 50.0%
AGAGACGTGAAACAGCGTCA+CGG + chr8_3:57000739-57000758 Msa1297070:CDS 50.0%
ATGACACAGTGTTCCTCCGA+TGG + chr8_3:57000867-57000886 Msa1297070:CDS 50.0%
CTTGTCGTGGAAGGATAAGC+CGG + chr8_3:57000905-57000924 Msa1297070:CDS 50.0%
! CACGTGCGTTTGGGATTCAT+TGG + chr8_3:57001008-57001027 Msa1297070:three_prime_UTR 50.0%
!! GTGGTGGTGGAGTTGATGGA+AGG - chr8_3:56999490-56999509 None:intergenic 55.0%
ATGCACGTGCGGTTTCAAGG+AGG - chr8_3:56999837-56999856 None:intergenic 55.0%
TTTGGACACGTGGCAGCCAA+CGG + chr8_3:57000099-57000118 Msa1297070:CDS 55.0%
ACGGAGGTGAGGCGTATCAT+CGG - chr8_3:57000232-57000251 None:intergenic 55.0%
GCTGACTGTGGTGACAACAG+TGG - chr8_3:57000259-57000278 None:intergenic 55.0%
! TGTTCCTCCGATGGTGATGC+CGG + chr8_3:57000876-57000895 Msa1297070:CDS 55.0%
TATTCCGGCATCACCATCGG+AGG - chr8_3:57000883-57000902 None:intergenic 55.0%
GAAGGATAAGCCGGTGGTGT+GGG + chr8_3:57000914-57000933 Msa1297070:CDS 55.0%
ACCTCAAGGCCTCCATACAC+TGG - chr8_3:57000940-57000959 None:intergenic 55.0%
AGTGTATGGAGGCCTTGAGG+TGG + chr8_3:57000939-57000958 Msa1297070:exon 55.0%
!! GTGGTGGTGGAGTTGATGGA+AGG - chr8_3:56999490-56999509 None:intergenic 55.0%
ATGCACGTGCGGTTTCAAGG+AGG - chr8_3:56999837-56999856 None:intergenic 55.0%
TTTGGACACGTGGCAGCCAA+CGG + chr8_3:57000099-57000118 Msa1297070:CDS 55.0%
ACGGAGGTGAGGCGTATCAT+CGG - chr8_3:57000232-57000251 None:intergenic 55.0%
GCTGACTGTGGTGACAACAG+TGG - chr8_3:57000259-57000278 None:intergenic 55.0%
! TGTTCCTCCGATGGTGATGC+CGG + chr8_3:57000876-57000895 Msa1297070:CDS 55.0%
TATTCCGGCATCACCATCGG+AGG - chr8_3:57000883-57000902 None:intergenic 55.0%
GAAGGATAAGCCGGTGGTGT+GGG + chr8_3:57000914-57000933 Msa1297070:CDS 55.0%
ACCTCAAGGCCTCCATACAC+TGG - chr8_3:57000940-57000959 None:intergenic 55.0%
AGTGTATGGAGGCCTTGAGG+TGG + chr8_3:57000939-57000958 Msa1297070:exon 55.0%
GCCAACACTCCTCGAAGCGT+TGG + chr8_3:57000197-57000216 Msa1297070:intron 60.0%
! GCCAACGCTTCGAGGAGTGT+TGG - chr8_3:57000201-57000220 None:intergenic 60.0%
GTGAGGCGTATCATCGGAGC+GGG - chr8_3:57000226-57000245 None:intergenic 60.0%
GGTGAGGCGTATCATCGGAG+CGG - chr8_3:57000227-57000246 None:intergenic 60.0%
GTTGTCACCACAGTCAGCGG+TGG + chr8_3:57000261-57000280 Msa1297070:intron 60.0%
ATCACGGTGGTTTCCGGCTC+CGG - chr8_3:57000469-57000488 None:intergenic 60.0%
GACGTGAAACAGCGTCACGG+TGG + chr8_3:57000742-57000761 Msa1297070:CDS 60.0%
GTGAAACAGCGTCACGGTGG+AGG + chr8_3:57000745-57000764 Msa1297070:CDS 60.0%
AAACAGCGTCACGGTGGAGG+AGG + chr8_3:57000748-57000767 Msa1297070:CDS 60.0%
TGGAGGAGGAGGTTGCATGG+TGG + chr8_3:57000762-57000781 Msa1297070:CDS 60.0%
AGGAGGAGGTTGCATGGTGG+TGG + chr8_3:57000765-57000784 Msa1297070:CDS 60.0%
GGAGGAGGTTGCATGGTGGT+GGG + chr8_3:57000766-57000785 Msa1297070:CDS 60.0%
GTCGTGGAAGGATAAGCCGG+TGG + chr8_3:57000908-57000927 Msa1297070:CDS 60.0%
GGAAGGATAAGCCGGTGGTG+TGG + chr8_3:57000913-57000932 Msa1297070:CDS 60.0%
CATACACTGGCCCACACCAC+CGG - chr8_3:57000927-57000946 None:intergenic 60.0%
TGGTGTGGGCCAGTGTATGG+AGG + chr8_3:57000928-57000947 Msa1297070:CDS 60.0%
GCCAGTGTATGGAGGCCTTG+AGG + chr8_3:57000936-57000955 Msa1297070:CDS 60.0%
!! AGGTGGCGCTGACATGGCAT+GGG + chr8_3:57000956-57000975 Msa1297070:exon 60.0%
GCCAACACTCCTCGAAGCGT+TGG + chr8_3:57000197-57000216 Msa1297070:intron 60.0%
! GCCAACGCTTCGAGGAGTGT+TGG - chr8_3:57000201-57000220 None:intergenic 60.0%
GTGAGGCGTATCATCGGAGC+GGG - chr8_3:57000226-57000245 None:intergenic 60.0%
GGTGAGGCGTATCATCGGAG+CGG - chr8_3:57000227-57000246 None:intergenic 60.0%
GTTGTCACCACAGTCAGCGG+TGG + chr8_3:57000261-57000280 Msa1297070:intron 60.0%
ATCACGGTGGTTTCCGGCTC+CGG - chr8_3:57000469-57000488 None:intergenic 60.0%
GACGTGAAACAGCGTCACGG+TGG + chr8_3:57000742-57000761 Msa1297070:CDS 60.0%
GTGAAACAGCGTCACGGTGG+AGG + chr8_3:57000745-57000764 Msa1297070:CDS 60.0%
AAACAGCGTCACGGTGGAGG+AGG + chr8_3:57000748-57000767 Msa1297070:CDS 60.0%
TGGAGGAGGAGGTTGCATGG+TGG + chr8_3:57000762-57000781 Msa1297070:CDS 60.0%
AGGAGGAGGTTGCATGGTGG+TGG + chr8_3:57000765-57000784 Msa1297070:CDS 60.0%
GGAGGAGGTTGCATGGTGGT+GGG + chr8_3:57000766-57000785 Msa1297070:CDS 60.0%
GTCGTGGAAGGATAAGCCGG+TGG + chr8_3:57000908-57000927 Msa1297070:CDS 60.0%
GGAAGGATAAGCCGGTGGTG+TGG + chr8_3:57000913-57000932 Msa1297070:CDS 60.0%
CATACACTGGCCCACACCAC+CGG - chr8_3:57000927-57000946 None:intergenic 60.0%
TGGTGTGGGCCAGTGTATGG+AGG + chr8_3:57000928-57000947 Msa1297070:CDS 60.0%
GCCAGTGTATGGAGGCCTTG+AGG + chr8_3:57000936-57000955 Msa1297070:CDS 60.0%
!! AGGTGGCGCTGACATGGCAT+GGG + chr8_3:57000956-57000975 Msa1297070:exon 60.0%
AGGCGTATCATCGGAGCGGG+TGG - chr8_3:57000223-57000242 None:intergenic 65.0%
CACCACAGTCAGCGGTGGCT+CGG + chr8_3:57000266-57000285 Msa1297070:intron 65.0%
CGGTGGAGGAGGAGGTTGCA+TGG + chr8_3:57000759-57000778 Msa1297070:CDS 65.0%
CGGTGGTGTGGGCCAGTGTA+TGG + chr8_3:57000925-57000944 Msa1297070:CDS 65.0%
!! GCCTTGAGGTGGCGCTGACA+TGG + chr8_3:57000950-57000969 Msa1297070:exon 65.0%
GCCATGTCAGCGCCACCTCA+AGG - chr8_3:57000954-57000973 None:intergenic 65.0%
!! GAGGTGGCGCTGACATGGCA+TGG + chr8_3:57000955-57000974 Msa1297070:exon 65.0%
AGGCGTATCATCGGAGCGGG+TGG - chr8_3:57000223-57000242 None:intergenic 65.0%
CACCACAGTCAGCGGTGGCT+CGG + chr8_3:57000266-57000285 Msa1297070:intron 65.0%
CGGTGGAGGAGGAGGTTGCA+TGG + chr8_3:57000759-57000778 Msa1297070:CDS 65.0%
CGGTGGTGTGGGCCAGTGTA+TGG + chr8_3:57000925-57000944 Msa1297070:CDS 65.0%
!! GCCTTGAGGTGGCGCTGACA+TGG + chr8_3:57000950-57000969 Msa1297070:exon 65.0%
GCCATGTCAGCGCCACCTCA+AGG - chr8_3:57000954-57000973 None:intergenic 65.0%
!! GAGGTGGCGCTGACATGGCA+TGG + chr8_3:57000955-57000974 Msa1297070:exon 65.0%
AGCGGGTGGCCAACGCTTCG+AGG - chr8_3:57000209-57000228 None:intergenic 70.0%
! CACCGAGCCACCGCTGACTG+TGG - chr8_3:57000271-57000290 None:intergenic 70.0%
CAGCGTCACGGTGGAGGAGG+AGG + chr8_3:57000751-57000770 Msa1297070:CDS 70.0%
AGCGGGTGGCCAACGCTTCG+AGG - chr8_3:57000209-57000228 None:intergenic 70.0%
! CACCGAGCCACCGCTGACTG+TGG - chr8_3:57000271-57000290 None:intergenic 70.0%
CAGCGTCACGGTGGAGGAGG+AGG + chr8_3:57000751-57000770 Msa1297070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 56999448 57001290 56999448 ID=Msa1297070;Name=Msa1297070
chr8_3 mRNA 56999448 57001290 56999448 ID=Msa1297070-mRNA-1;Parent=Msa1297070;Name=Msa1297070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.33|1|0|0|3|334|457
chr8_3 exon 56999448 56999968 56999448 ID=Msa1297070-mRNA-1:exon:16342;Parent=Msa1297070-mRNA-1
chr8_3 exon 56999975 57000144 56999975 ID=Msa1297070-mRNA-1:exon:16343;Parent=Msa1297070-mRNA-1
chr8_3 exon 57000274 57001290 57000274 ID=Msa1297070-mRNA-1:exon:16344;Parent=Msa1297070-mRNA-1
chr8_3 CDS 56999448 56999968 56999448 ID=Msa1297070-mRNA-1:cds;Parent=Msa1297070-mRNA-1
chr8_3 CDS 56999975 57000144 56999975 ID=Msa1297070-mRNA-1:cds;Parent=Msa1297070-mRNA-1
chr8_3 CDS 57000274 57000956 57000274 ID=Msa1297070-mRNA-1:cds;Parent=Msa1297070-mRNA-1
chr8_3 three_prime_UTR 57000957 57001290 57000957 ID=Msa1297070-mRNA-1:three_prime_utr;Parent=Msa1297070-mRNA-1
Gene Sequence

>Msa1297070

CTTGTCAATTTTCAACAACAACAACAATATCAACCTGATCCTTCCATCAACTCCACCACCACCTTAACAACTTCTAGCAGCTCTAGATCCTCAAGACAAACAACATATCAATATTACAACCAACAAGAAGAAGACGAAGAATGCTTCAACAACTTTTATTACATGGATCATAATAACAACAATGATGAAGATTTATCCTCATCTTCTTCTAAACAACACTATTATACTTATCCTTATGCATCCACTACTACTATCACTACTCCAAACACAACAAACACTACTTATAATACTATCAACACCCCCACCACAACTGATAATTACTCTTTCTCACCCTCCCACGATTACTTCAACTTTGAATTCTCCGGCAACTCATGGTCACAAAACATCCTCCTTGAAACCGCACGTGCATTTTCCGACAACAACACAAACCGAATCCAACAACTCATGTGGATGCTAAACGAGCTTAGTTCCCCATACGGTGACACAGATCAAAAACTTTCTTCTTATTTTCTTCAAGCTTTTCGCATGAACGACGCGGGAGATAGAACCTACAAAACCTTAACATCCGCGTCGGAAAAAACATGTTCCTTCGATTCAACGAGGAAGATGTTGTTGAAGTTCCAAGAAGTTAGTCCATGGACAACGTTTGGACACGTGGCAGCCAACGGTGCTATCTTAGAAGCATTAGAAGTCAGCGGTGGCTCGGTGCAAAAAGTCATGAAGGAAATCGGTTCAAGGATGGAAAAATTTGCTAGGCTCATGGGAGTGCCGTTTAAATTCAAAATTATTTTCAGTGATTTAAGAGAGTTGAATTTGTGTGATTTAGATATTAAAGAAGATGAAGCTTTGGCTATAAATTGTGTAAACTCTTTACATTCGATATCCGGAGCCGGAAACCACCGTGATTTGTTTATATCTTTGCTTCGTGGGTTAGAACCTAGGGTTTTAACTATTGTTGAAGAGGAAGCTGATTTAGAAGTTTGTTTTGGTTCGGATTTCGTGGAAGGTTTTAAAGAGTGTTTAAGATGGTTTAGGGTTTATTTTGAAGCACTTGATGAAAGTTTTTCAAGAACAAGTAGTGAGAGGTTGATGCTAGAAAGAGAAGCTGGAAGAGGTATTGTTGATTTGGTTGCTTGTGACCCTTATGAGTCAATGGAGAGACGTGAAACAGCGTCACGGTGGAGGAGGAGGTTGCATGGTGGTGGGTTTAATACGGTGTCGTTTAGTGATGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAAAGAAGGGTGGTCGATGACACAGTGTTCCTCCGATGGTGATGCCGGAATATTCTTGTCGTGGAAGGATAAGCCGGTGGTGTGGGCCAGTGTATGGAGGCCTTGA

Protein sequence

>Msa1297070

LVNFQQQQQYQPDPSINSTTTLTTSSSSRSSRQTTYQYYNQQEEDEECFNNFYYMDHNNNNDEDLSSSSSKQHYYTYPYASTTTITTPNTTNTTYNTINTPTTTDNYSFSPSHDYFNFEFSGNSWSQNILLETARAFSDNNTNRIQQLMWMLNELSSPYGDTDQKLSSYFLQAFRMNDAGDRTYKTLTSASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEVSGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESMERRETASRWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTQCSSDGDAGIFLSWKDKPVVWASVWRP*