AlfalfaGEDB | Msa1297070

M. sativa cultivar zhongmu-4 / Msa1297070

KEGG: -
GO: GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007346 GO:0007389 GO:0008150 GO:0008356 GO:0009889 GO:0009956 GO:0009987 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045786 GO:0045930 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051171 GO:0051252 GO:0051301 GO:0051726 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297070	sp\|Q9SZF7\|SHR_ARATH	50.595	504	159	13	33	457	38	530	7.39e-151	442

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297070	G7JE24	87.873	503	10	5	1	457	7	504	0.0	889

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TFs/TRs:

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Gene ID	Type	Classification
Msa1297070	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa1297070	0.869965	2.083702e-66	-8.615850e-47
Msa0013270	Msa1297070	0.817144	3.840310e-52	-8.615850e-47
Msa0015570	Msa1297070	0.863821	1.892747e-64	-8.615850e-47
Msa0016530	Msa1297070	0.839884	1.212782e-57	-8.615850e-47
Msa0018920	Msa1297070	0.876308	1.548399e-68	-8.615850e-47
Msa0020540	Msa1297070	0.827965	1.168829e-54	-8.615850e-47
Msa0025160	Msa1297070	0.808612	2.842965e-50	-8.615850e-47
Msa0027800	Msa1297070	0.844247	8.506772e-59	-8.615850e-47
Msa0030070	Msa1297070	0.874633	5.798807e-68	-8.615850e-47
Msa0030690	Msa1297070	0.805839	1.099946e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297070	MtrunA17_Chr5g0401131	60.156	512	122	15	1	457	7	491	0.0	525
Msa1297070	MtrunA17_Chr4g0054071	93.133	233	10	3	1	230	7	236	1.39e-115	339
Msa1297070	MtrunA17_Chr2g0329591	43.614	415	166	10	99	457	50	452	1.62e-104	318
Msa1297070	MtrunA17_Chr5g0445331	27.225	382	218	9	127	456	159	532	3.66e-41	154
Msa1297070	MtrunA17_Chr1g0159461	27.368	380	216	10	127	456	223	592	7.83e-40	151
Msa1297070	MtrunA17_Chr5g0447691	26.579	380	219	9	127	456	175	544	4.38e-39	148
Msa1297070	MtrunA17_Chr2g0319091	26.893	383	214	9	127	456	210	579	1.21e-37	144
Msa1297070	MtrunA17_Chr3g0101141	25.126	398	222	10	117	456	163	542	4.16e-36	140
Msa1297070	MtrunA17_Chr3g0125811	26.053	380	221	10	127	456	201	570	4.51e-36	140
Msa1297070	MtrunA17_Chr7g0224271	26.615	387	214	11	128	456	299	673	1.24e-34	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297070	AT4G37650.1	50.595	504	159	13	33	457	38	530	7.51e-152	442
Msa1297070	AT2G04890.1	27.763	371	215	7	129	456	53	413	7.47e-44	159
Msa1297070	AT1G50600.3	26.402	428	244	11	83	456	116	526	1.47e-40	152
Msa1297070	AT1G50600.1	26.402	428	244	11	83	456	187	597	3.16e-40	152
Msa1297070	AT1G50600.2	26.402	428	244	11	83	456	191	601	3.60e-40	152
Msa1297070	AT1G21450.1	28.571	399	204	13	119	456	215	593	5.75e-38	146
Msa1297070	AT3G49950.1	28.316	392	210	11	127	457	28	409	6.13e-36	137
Msa1297070	AT5G48150.1	24.934	377	224	9	130	456	123	490	1.31e-35	138
Msa1297070	AT5G48150.4	24.934	377	224	9	130	456	123	490	1.31e-35	138
Msa1297070	AT5G48150.2	24.934	377	224	9	130	456	123	490	1.31e-35	138

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Find 119 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCACGTGCGGTTTCA+AGG	0.430548	8_3:-56999837	None:intergenic
AAACAAATCACGGTGGTTTC+CGG	0.257711	8_3:-57000472	None:intergenic
AAACAGCGTCACGGTGGAGG+AGG	0.519490	8_3:+57000748	Msa1297070:CDS
AAAGTTGAAGTAATCGTGGG+AGG	0.640378	8_3:-56999779	None:intergenic
AACGAGCTTAGTTCCCCATA+CGG	0.616114	8_3:+56999904	Msa1297070:CDS
AACTCTTTACATTCGATATC+CGG	0.397888	8_3:+57000447	Msa1297070:CDS
AAGAGTGTTTAAGATGGTTT+AGG	0.258495	8_3:+57000595	Msa1297070:CDS
AAGATATAAACAAATCACGG+TGG	0.755243	8_3:-57000479	None:intergenic
AAGTTGAAGTAATCGTGGGA+GGG	0.628358	8_3:-56999778	None:intergenic
AAGTTTGGTAATTAATTTAG+GGG	0.593455	8_3:+57001089	Msa1297070:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGAGTAATTATCAGTTG+TGG	-	chr8_3:56999755-56999774	None:intergenic	30.0%
TTCAAAGTTGAAGTAATCGT+GGG	-	chr8_3:56999785-56999804	None:intergenic	30.0%
ATTCAAAGTTGAAGTAATCG+TGG	-	chr8_3:56999786-56999805	None:intergenic	30.0%
TACTTCAACTTTGAATTCTC+CGG	+	chr8_3:56999790-56999809	Msa1297070:CDS	30.0%
CAAAAAGTCATGAAGGAAAT+CGG	+	chr8_3:57000291-57000310	Msa1297070:CDS	30.0%
AACTCTTTACATTCGATATC+CGG	+	chr8_3:57000447-57000466	Msa1297070:CDS	30.0%
AAGATATAAACAAATCACGG+TGG	-	chr8_3:57000482-57000501	None:intergenic	30.0%
TTGTTTATATCTTTGCTTCG+TGG	+	chr8_3:57000489-57000508	Msa1297070:CDS	30.0%
TGTTTATATCTTTGCTTCGT+GGG	+	chr8_3:57000490-57000509	Msa1297070:CDS	30.0%
TCAACAATAGTTAAAACCCT+AGG	-	chr8_3:57000522-57000541	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	56999448	57001290	56999448	ID=Msa1297070;Name=Msa1297070
chr8_3	mRNA	56999448	57001290	56999448	ID=Msa1297070-mRNA-1;Parent=Msa1297070;Name=Msa1297070-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0.5\|0.33\|1\|0\|0\|3\|334\|457
chr8_3	exon	56999448	56999968	56999448	ID=Msa1297070-mRNA-1:exon:16342;Parent=Msa1297070-mRNA-1
chr8_3	exon	56999975	57000144	56999975	ID=Msa1297070-mRNA-1:exon:16343;Parent=Msa1297070-mRNA-1
chr8_3	exon	57000274	57001290	57000274	ID=Msa1297070-mRNA-1:exon:16344;Parent=Msa1297070-mRNA-1
chr8_3	CDS	56999448	56999968	56999448	ID=Msa1297070-mRNA-1:cds;Parent=Msa1297070-mRNA-1
chr8_3	CDS	56999975	57000144	56999975	ID=Msa1297070-mRNA-1:cds;Parent=Msa1297070-mRNA-1
chr8_3	CDS	57000274	57000956	57000274	ID=Msa1297070-mRNA-1:cds;Parent=Msa1297070-mRNA-1
chr8_3	three_prime_UTR	57000957	57001290	57000957	ID=Msa1297070-mRNA-1:three_prime_utr;Parent=Msa1297070-mRNA-1

Gene Sequence

>Msa1297070

CTTGTCAATTTTCAACAACAACAACAATATCAACCTGATCCTTCCATCAACTCCACCACCACCTTAACAACTTCTAGCAGCTCTAGATCCTCAAGACAAACAACATATCAATATTACAACCAACAAGAAGAAGACGAAGAATGCTTCAACAACTTTTATTACATGGATCATAATAACAACAATGATGAAGATTTATCCTCATCTTCTTCTAAACAACACTATTATACTTATCCTTATGCATCCACTACTACTATCACTACTCCAAACACAACAAACACTACTTATAATACTATCAACACCCCCACCACAACTGATAATTACTCTTTCTCACCCTCCCACGATTACTTCAACTTTGAATTCTCCGGCAACTCATGGTCACAAAACATCCTCCTTGAAACCGCACGTGCATTTTCCGACAACAACACAAACCGAATCCAACAACTCATGTGGATGCTAAACGAGCTTAGTTCCCCATACGGTGACACAGATCAAAAACTTTCTTCTTATTTTCTTCAAGCTTTTCGCATGAACGACGCGGGAGATAGAACCTACAAAACCTTAACATCCGCGTCGGAAAAAACATGTTCCTTCGATTCAACGAGGAAGATGTTGTTGAAGTTCCAAGAAGTTAGTCCATGGACAACGTTTGGACACGTGGCAGCCAACGGTGCTATCTTAGAAGCATTAGAAGTCAGCGGTGGCTCGGTGCAAAAAGTCATGAAGGAAATCGGTTCAAGGATGGAAAAATTTGCTAGGCTCATGGGAGTGCCGTTTAAATTCAAAATTATTTTCAGTGATTTAAGAGAGTTGAATTTGTGTGATTTAGATATTAAAGAAGATGAAGCTTTGGCTATAAATTGTGTAAACTCTTTACATTCGATATCCGGAGCCGGAAACCACCGTGATTTGTTTATATCTTTGCTTCGTGGGTTAGAACCTAGGGTTTTAACTATTGTTGAAGAGGAAGCTGATTTAGAAGTTTGTTTTGGTTCGGATTTCGTGGAAGGTTTTAAAGAGTGTTTAAGATGGTTTAGGGTTTATTTTGAAGCACTTGATGAAAGTTTTTCAAGAACAAGTAGTGAGAGGTTGATGCTAGAAAGAGAAGCTGGAAGAGGTATTGTTGATTTGGTTGCTTGTGACCCTTATGAGTCAATGGAGAGACGTGAAACAGCGTCACGGTGGAGGAGGAGGTTGCATGGTGGTGGGTTTAATACGGTGTCGTTTAGTGATGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAAAGAAGGGTGGTCGATGACACAGTGTTCCTCCGATGGTGATGCCGGAATATTCTTGTCGTGGAAGGATAAGCCGGTGGTGTGGGCCAGTGTATGGAGGCCTTGA

Protein sequence

>Msa1297070

LVNFQQQQQYQPDPSINSTTTLTTSSSSRSSRQTTYQYYNQQEEDEECFNNFYYMDHNNNNDEDLSSSSSKQHYYTYPYASTTTITTPNTTNTTYNTINTPTTTDNYSFSPSHDYFNFEFSGNSWSQNILLETARAFSDNNTNRIQQLMWMLNELSSPYGDTDQKLSSYFLQAFRMNDAGDRTYKTLTSASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEVSGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESMERRETASRWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTQCSSDGDAGIFLSWKDKPVVWASVWRP*