AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206040 MtrunA17_Chr5g0401131 60.156 512 122 15 1 457 7 491 0.0 525
Msa1206040 MtrunA17_Chr4g0054071 93.133 233 10 3 1 230 7 236 1.39e-115 339
Msa1206040 MtrunA17_Chr2g0329591 43.614 415 166 10 99 457 50 452 1.62e-104 318
Msa1206040 MtrunA17_Chr5g0445331 27.225 382 218 9 127 456 159 532 3.66e-41 154
Msa1206040 MtrunA17_Chr1g0159461 27.368 380 216 10 127 456 223 592 7.83e-40 151
Msa1206040 MtrunA17_Chr5g0447691 26.579 380 219 9 127 456 175 544 4.38e-39 148
Msa1206040 MtrunA17_Chr2g0319091 26.893 383 214 9 127 456 210 579 1.21e-37 144
Msa1206040 MtrunA17_Chr3g0101141 25.126 398 222 10 117 456 163 542 4.16e-36 140
Msa1206040 MtrunA17_Chr3g0125811 26.053 380 221 10 127 456 201 570 4.51e-36 140
Msa1206040 MtrunA17_Chr7g0224271 26.615 387 214 11 128 456 299 673 1.24e-34 137
Msa1206040 MtrunA17_Chr4g0053901 23.899 477 262 10 72 457 3 469 3.43e-34 133
Msa1206040 MtrunA17_Chr5g0401421 24.249 433 226 10 118 457 24 447 1.14e-32 129
Msa1206040 MtrunA17_Chr2g0290241 26.124 356 203 10 151 456 80 425 3.85e-32 127
Msa1206040 MtrunA17_Chr4g0076091 25.393 382 220 11 127 455 173 542 1.26e-31 127
Msa1206040 MtrunA17_Chr8g0344101 27.318 399 206 13 125 456 219 600 1.00e-29 122
Msa1206040 MtrunA17_Chr7g0245601 24.595 370 218 13 132 457 441 793 1.19e-26 113
Msa1206040 MtrunA17_Chr4g0057291 23.238 383 231 10 128 457 291 663 5.64e-26 111
Msa1206040 MtrunA17_Chr4g0039661 25.729 377 215 9 130 456 194 555 1.11e-25 109
Msa1206040 MtrunA17_Chr8g0376381 23.387 372 221 9 130 456 170 522 1.81e-25 108
Msa1206040 MtrunA17_Chr3g0110971 23.560 382 223 8 130 456 220 587 1.82e-25 109
Msa1206040 MtrunA17_Chr2g0328341 23.873 377 230 12 129 457 272 639 4.47e-24 105
Msa1206040 MtrunA17_Chr2g0328391 25.722 381 226 9 127 457 297 670 5.99e-24 105
Msa1206040 MtrunA17_Chr4g0038761 24.599 374 217 15 132 457 87 443 7.16e-23 100
Msa1206040 MtrunA17_Chr2g0328381 22.222 387 224 12 129 457 275 642 2.30e-22 100
Msa1206040 MtrunA17_Chr7g0236851 27.869 244 162 5 218 455 421 656 2.70e-22 100
Msa1206040 MtrunA17_Chr4g0057891 22.597 385 228 10 129 456 149 520 1.20e-21 97.4
Msa1206040 MtrunA17_Chr4g0031701 24.147 381 225 12 127 453 252 622 1.75e-21 97.4
Msa1206040 MtrunA17_Chr4g0031711 22.977 383 236 8 127 457 359 734 1.77e-21 97.8
Msa1206040 MtrunA17_Chr4g0031721 23.298 382 232 11 127 457 314 685 3.06e-21 97.1
Msa1206040 MtrunA17_Chr4g0031741 23.947 380 226 12 129 457 284 651 3.43e-21 96.7
Msa1206040 MtrunA17_Chr8g0357601 24.274 379 226 14 130 456 183 552 5.24e-21 95.9
Msa1206040 MtrunA17_Chr2g0323111 29.348 184 118 4 279 457 131 307 5.38e-21 93.6
Msa1206040 MtrunA17_Chr2g0306641 23.167 341 197 10 165 456 163 487 7.30e-21 95.1
Msa1206040 MtrunA17_Chr4g0031731 23.360 381 228 10 127 453 252 622 6.41e-20 92.8
Msa1206040 MtrunA17_Chr7g0238891 21.164 378 245 8 127 457 370 741 4.37e-19 90.1
Msa1206040 MtrunA17_Chr2g0328411 22.546 377 230 12 129 455 289 653 5.44e-19 90.1
Msa1206040 MtrunA17_Chr2g0328401 21.893 338 217 8 129 422 290 624 2.28e-18 87.8
Msa1206040 MtrunA17_Chr1g0183641 24.259 371 220 13 129 455 123 476 3.69e-18 86.7
Msa1206040 MtrunA17_Chr2g0328431 22.812 377 233 11 129 457 289 655 1.56e-17 85.5
Msa1206040 MtrunA17_Chr6g0468561 24.365 394 212 15 126 456 292 662 1.01e-15 79.7
Msa1206040 MtrunA17_Chr1g0200401 24.378 402 210 14 128 456 79 459 1.73e-15 78.6
Msa1206040 MtrunA17_Chr1g0194621 24.255 235 168 5 226 456 290 518 3.40e-15 77.8
Msa1206040 MtrunA17_Chr3g0085681 28.395 162 108 4 296 456 282 436 6.55e-15 76.6
Msa1206040 MtrunA17_Chr3g0085361 27.778 162 108 3 296 456 197 350 6.59e-14 72.8
Msa1206040 MtrunA17_Chr7g0270031 23.207 237 173 5 224 456 323 554 4.80e-13 71.2
Msa1206040 MtrunA17_Chr3g0114841 23.454 388 230 13 128 455 119 499 8.71e-13 70.1
Msa1206040 MtrunA17_Chr5g0396491 29.677 155 100 4 304 456 331 478 2.10e-12 68.9
Msa1206040 MtrunA17_Chr2g0328371 26.699 206 132 8 213 405 49 248 7.34e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206040 AT4G37650.1 50.595 504 159 13 33 457 38 530 7.51e-152 442
Msa1206040 AT2G04890.1 27.763 371 215 7 129 456 53 413 7.47e-44 159
Msa1206040 AT1G50600.3 26.402 428 244 11 83 456 116 526 1.47e-40 152
Msa1206040 AT1G50600.1 26.402 428 244 11 83 456 187 597 3.16e-40 152
Msa1206040 AT1G50600.2 26.402 428 244 11 83 456 191 601 3.60e-40 152
Msa1206040 AT1G21450.1 28.571 399 204 13 119 456 215 593 5.75e-38 146
Msa1206040 AT3G49950.1 28.316 392 210 11 127 457 28 409 6.13e-36 137
Msa1206040 AT5G48150.1 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1206040 AT5G48150.4 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1206040 AT5G48150.2 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1206040 AT5G48150.3 24.934 377 224 9 130 456 123 490 1.31e-35 138
Msa1206040 AT1G66350.1 27.446 368 209 10 130 456 156 506 2.80e-31 126
Msa1206040 AT3G03450.1 24.603 378 222 8 128 456 182 545 7.38e-31 125
Msa1206040 AT4G17230.1 23.958 384 226 10 127 457 156 526 1.82e-30 124
Msa1206040 AT4G17230.2 23.958 384 226 10 127 457 156 526 1.82e-30 124
Msa1206040 AT5G17490.1 25.538 372 216 8 130 456 161 516 1.74e-29 121
Msa1206040 AT2G29060.2 24.582 419 240 13 101 457 252 656 5.43e-26 111
Msa1206040 AT2G29060.1 24.582 419 240 13 101 457 289 693 6.50e-26 111
Msa1206040 AT3G54220.1 25.201 373 215 14 132 457 296 651 1.71e-25 110
Msa1206040 AT1G14920.1 24.528 371 222 9 130 456 173 529 4.40e-25 108
Msa1206040 AT2G01570.1 22.911 371 228 9 130 456 225 581 1.49e-23 103
Msa1206040 AT2G37650.2 23.670 376 236 10 127 457 333 702 5.75e-23 102
Msa1206040 AT2G37650.1 23.670 376 236 10 127 457 345 714 5.84e-23 102
Msa1206040 AT1G07530.1 22.835 381 236 8 127 457 394 766 1.85e-22 101
Msa1206040 AT3G13840.1 25.131 382 221 14 125 456 144 510 2.85e-22 99.8
Msa1206040 AT5G52510.1 25.856 263 179 6 199 456 389 640 3.02e-22 100
Msa1206040 AT5G66770.1 24.865 370 216 9 137 456 227 584 9.39e-22 98.6
Msa1206040 AT2G29065.1 22.338 385 240 11 127 457 250 629 9.47e-22 98.6
Msa1206040 AT1G63100.2 24.870 386 224 13 128 455 276 653 2.56e-20 94.4
Msa1206040 AT1G63100.1 24.870 386 224 13 128 455 251 628 3.62e-20 94.0
Msa1206040 AT1G50420.1 22.248 436 220 11 128 456 56 479 1.21e-19 91.7
Msa1206040 AT5G41920.1 24.000 375 223 13 128 456 42 400 3.09e-19 89.7
Msa1206040 AT3G50650.1 24.069 349 201 8 160 456 206 542 3.60e-19 90.5
Msa1206040 AT3G46600.1 22.105 380 238 7 127 457 210 580 2.71e-18 87.8
Msa1206040 AT3G46600.2 22.105 380 238 7 127 457 2 372 2.73e-18 86.7
Msa1206040 AT1G55580.1 25.061 411 216 15 129 456 44 445 3.13e-18 87.0
Msa1206040 AT3G46600.3 22.105 380 238 7 127 457 178 548 5.29e-18 87.0
Msa1206040 AT5G59450.1 21.932 383 239 9 127 457 225 599 1.16e-16 83.2
Msa1206040 AT4G08250.1 24.832 298 167 9 207 455 187 476 4.27e-12 68.6

Find 119 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAGTTTGGTAATTAATTT+AGG 0.130849 8_1:-62768631 Msa1206040:three_prime_UTR
AGTATAAGAGGATTGATTAA+AGG 0.252023 8_1:-62768606 Msa1206040:three_prime_UTR
AAACAAATCACGGTGGTTTC+CGG 0.257711 8_1:+62769246 None:intergenic
AAGAGTGTTTAAGATGGTTT+AGG 0.258495 8_1:-62769123 Msa1206040:CDS
ATTCTTCGTCTTCTTCTTGT+TGG 0.301725 8_1:+62770151 None:intergenic
TTGATCAAAATATGTAAGTT+TGG 0.303339 8_1:-62768644 Msa1206040:three_prime_UTR
TAAGTTTGGTAATTAATTTA+GGG 0.321407 8_1:-62768630 Msa1206040:three_prime_UTR
AGGAGGAGGTTGCATGGTGG+TGG 0.328666 8_1:-62768953 Msa1206040:CDS
TTGTCCATGGACTAACTTCT+TGG 0.329314 8_1:+62769644 None:intergenic
TAAGTAGTGTTTGTTGTGTT+TGG 0.339821 8_1:+62770009 None:intergenic
ATGAAGTTTGTGATGATGTT+AGG 0.345281 8_1:-62768907 Msa1206040:CDS
GCTGATTTAGAAGTTTGTTT+TGG 0.347659 8_1:-62769169 Msa1206040:CDS
TAAGGTGGTGGTGGAGTTGA+TGG 0.368817 8_1:+62770227 None:intergenic
AGAGTGTTTAAGATGGTTTA+GGG 0.373474 8_1:-62769122 Msa1206040:CDS
TGGAAGAGGTATTGTTGATT+TGG 0.374691 8_1:-62769029 Msa1206040:CDS
CACGTGCGTTTGGGATTCAT+TGG 0.375500 8_1:-62768710 Msa1206040:three_prime_UTR
ATCACGGTGGTTTCCGGCTC+CGG 0.383080 8_1:+62769252 None:intergenic
GTATAAGAGGATTGATTAAA+GGG 0.383571 8_1:-62768605 Msa1206040:three_prime_UTR
AACTCTTTACATTCGATATC+CGG 0.397888 8_1:-62769271 Msa1206040:CDS
TCCACATGAGTTGTTGGATT+CGG 0.400997 8_1:+62769842 None:intergenic
CGTCTCTCCATTGACTCATA+AGG 0.404423 8_1:+62768995 None:intergenic
TACTTCAACTTTGAATTCTC+CGG 0.412778 8_1:-62769928 Msa1206040:CDS
GTTAGTCCATGGACAACGTT+TGG 0.420735 8_1:-62769637 Msa1206040:CDS
AAAATGCACGTGCGGTTTCA+AGG 0.430548 8_1:+62769881 None:intergenic
CGGTGGTGTGGGCCAGTGTA+TGG 0.430711 8_1:-62768793 Msa1206040:CDS
CTTCCACGACAAGAATATTC+CGG 0.431546 8_1:+62768823 None:intergenic
GCATGGTGGTGGGTTTAATA+CGG 0.431980 8_1:-62768942 Msa1206040:CDS
GGAGGAGGTTGCATGGTGGT+GGG 0.435450 8_1:-62768952 Msa1206040:CDS
TATTAAAGAAGATGAAGCTT+TGG 0.437246 8_1:-62769308 Msa1206040:CDS
TTAATTTAGGGGAGTATAAG+AGG 0.440289 8_1:-62768618 Msa1206040:three_prime_UTR
TGTTTATATCTTTGCTTCGT+GGG 0.441689 8_1:-62769228 Msa1206040:CDS
TTAGCATCCACATGAGTTGT+TGG 0.445709 8_1:+62769836 None:intergenic
TTTACATAAGAATAGGGTTG+TGG 0.448203 8_1:-62768467 Msa1206040:three_prime_UTR
TTGTTTATATCTTTGCTTCG+TGG 0.451946 8_1:-62769229 Msa1206040:CDS
GCCTTGAGGTGGCGCTGACA+TGG 0.452766 8_1:-62768768 Msa1206040:exon
CACCACAGTCAGCGGTGGCT+CGG 0.457207 8_1:-62769452 Msa1206040:intron
TGCTTCGTGGGTTAGAACCT+AGG 0.461690 8_1:-62769216 Msa1206040:CDS
CAGCGTCACGGTGGAGGAGG+AGG 0.463327 8_1:-62768967 Msa1206040:CDS
GTGGAGTTGATGGAAGGATC+AGG 0.465751 8_1:+62770237 None:intergenic
TTTGGTTCGGATTTCGTGGA+AGG 0.470121 8_1:-62769151 Msa1206040:CDS
TGAAGTTTGTGATGATGTTA+GGG 0.470148 8_1:-62768906 Msa1206040:CDS
GATTCGGTTTGTGTTGTTGT+CGG 0.471253 8_1:+62769858 None:intergenic
GCTATCTTAGAAGCATTAGA+AGG 0.474912 8_1:-62769595 Msa1206040:intron
GTCTCTCCATTGACTCATAA+GGG 0.477366 8_1:+62768996 None:intergenic
ATGTTAGGGCTTTGTTGAGA+AGG 0.482294 8_1:-62768892 Msa1206040:CDS
AGAGCTGCTAGAAGTTGTTA+AGG 0.490994 8_1:+62770209 None:intergenic
TCATGAAGGAAATCGGTTCA+AGG 0.493998 8_1:-62769420 Msa1206040:CDS
TTGAATTCTCCGGCAACTCA+TGG 0.501115 8_1:-62769918 Msa1206040:CDS
GCTTCGTGGGTTAGAACCTA+GGG 0.504275 8_1:-62769215 Msa1206040:CDS
GTAATTATCAGTTGTGGTGG+GGG 0.506791 8_1:+62769972 None:intergenic
TTGATGCTAGAAAGAGAAGC+TGG 0.507592 8_1:-62769049 Msa1206040:CDS
GAGGTGGCGCTGACATGGCA+TGG 0.508114 8_1:-62768763 Msa1206040:three_prime_UTR
ATAGTAGTAGTGGATGCATA+AGG 0.510603 8_1:+62770039 None:intergenic
AGAGTAATTATCAGTTGTGG+TGG 0.511198 8_1:+62769969 None:intergenic
TGTTCCTCCGATGGTGATGC+CGG 0.512206 8_1:-62768842 Msa1206040:CDS
GAGTAATTATCAGTTGTGGT+GGG 0.513221 8_1:+62769970 None:intergenic
TTTGATCTGTGTCACCGTAT+GGG 0.514015 8_1:+62769800 None:intergenic
CGGTGGAGGAGGAGGTTGCA+TGG 0.514673 8_1:-62768959 Msa1206040:CDS
GAAGGATAAGCCGGTGGTGT+GGG 0.516813 8_1:-62768804 Msa1206040:CDS
GGAAGGATAAGCCGGTGGTG+TGG 0.518070 8_1:-62768805 Msa1206040:CDS
CGGAATATTCTTGTCGTGGA+AGG 0.518332 8_1:-62768822 Msa1206040:CDS
CTAGAAAGAGAAGCTGGAAG+AGG 0.518793 8_1:-62769043 Msa1206040:CDS
AAACAGCGTCACGGTGGAGG+AGG 0.519490 8_1:-62768970 Msa1206040:CDS
CATACACTGGCCCACACCAC+CGG 0.526670 8_1:+62768794 None:intergenic
TTGATCTGTGTCACCGTATG+GGG 0.527505 8_1:+62769801 None:intergenic
TTGTTGAGAAGGTATAAAGA+AGG 0.530989 8_1:-62768881 Msa1206040:CDS
AGAAGTTGTTAAGGTGGTGG+TGG 0.532155 8_1:+62770218 None:intergenic
ACCTCAAGGCCTCCATACAC+TGG 0.532917 8_1:+62768781 None:intergenic
TGCTTCTAAGATAGCACCGT+TGG 0.532927 8_1:+62769603 None:intergenic
TCAACAATAGTTAAAACCCT+AGG 0.537053 8_1:+62769199 None:intergenic
GCCATGTCAGCGCCACCTCA+AGG 0.538008 8_1:+62768767 None:intergenic
TGTTGAGAAGGTATAAAGAA+GGG 0.543842 8_1:-62768880 Msa1206040:CDS
TTTAGTCGCATGAACGACGC+GGG 0.545808 8_1:-62769748 Msa1206040:intron
CATCTTCCTCGTTGAATCGA+AGG 0.549319 8_1:+62769678 None:intergenic
ACGTGTCCAAACGTTGTCCA+TGG 0.550032 8_1:+62769631 None:intergenic
AGTAATTATCAGTTGTGGTG+GGG 0.552091 8_1:+62769971 None:intergenic
GAAGGAAATCGGTTCAAGGA+TGG 0.552770 8_1:-62769416 Msa1206040:CDS
ATTCAAAGTTGAAGTAATCG+TGG 0.563080 8_1:+62769935 None:intergenic
TTGATATGTTGTTTGTCTTG+AGG 0.563090 8_1:+62770182 None:intergenic
TGGAGTAGTGATAGTAGTAG+TGG 0.565967 8_1:+62770029 None:intergenic
GCCAGTGTATGGAGGCCTTG+AGG 0.566308 8_1:-62768782 Msa1206040:exon
TTGTGACCCTTATGAGTCAA+TGG 0.568784 8_1:-62769002 Msa1206040:CDS
GTGAAACAGCGTCACGGTGG+AGG 0.572256 8_1:-62768973 Msa1206040:CDS
GAATATTCCGGCATCACCAT+CGG 0.580354 8_1:+62768835 None:intergenic
TTTCAAGAACAAGTAGTGAG+AGG 0.582987 8_1:-62769072 Msa1206040:CDS
AGTTCCAAGAAGTTAGTCCA+TGG 0.584447 8_1:-62769648 Msa1206040:CDS
TTACATTCGATATCCGGAGC+CGG 0.585693 8_1:-62769265 Msa1206040:CDS
ATGGACAACGTTTGGACACG+TGG 0.586613 8_1:-62769629 Msa1206040:CDS
TTCAAAGTTGAAGTAATCGT+GGG 0.586851 8_1:+62769936 None:intergenic
ATGACACAGTGTTCCTCCGA+TGG 0.587322 8_1:-62768851 Msa1206040:CDS
TTTGGACACGTGGCAGCCAA+CGG 0.587329 8_1:-62769619 Msa1206040:CDS
CTTGTCGTGGAAGGATAAGC+CGG 0.587868 8_1:-62768813 Msa1206040:CDS
AGGTGGCGCTGACATGGCAT+GGG 0.590917 8_1:-62768762 Msa1206040:three_prime_UTR
GTTTAGTCGCATGAACGACG+CGG 0.592117 8_1:-62769749 Msa1206040:intron
GTGTTGTTTAGAAGAAGATG+AGG 0.594437 8_1:+62770074 None:intergenic
GAAAGAGTAATTATCAGTTG+TGG 0.594879 8_1:+62769966 None:intergenic
GCAAAGATATAAACAAATCA+CGG 0.596997 8_1:+62769236 None:intergenic
AAGTTTGGTAATTAATTTAG+GGG 0.604828 8_1:-62768629 Msa1206040:three_prime_UTR
TGGTGTGGGCCAGTGTATGG+AGG 0.609272 8_1:-62768790 Msa1206040:CDS
AGTGTATGGAGGCCTTGAGG+TGG 0.614107 8_1:-62768779 Msa1206040:exon
ATGCCGGAATATTCTTGTCG+TGG 0.614564 8_1:-62768826 Msa1206040:CDS
ACCGAATCCAACAACTCATG+TGG 0.616002 8_1:-62769843 Msa1206040:CDS
AACGAGCTTAGTTCCCCATA+CGG 0.616114 8_1:-62769814 Msa1206040:CDS
GTGGTGGTGGAGTTGATGGA+AGG 0.616191 8_1:+62770231 None:intergenic
GCTAGAAGTTGTTAAGGTGG+TGG 0.616229 8_1:+62770215 None:intergenic
AAGTTGAAGTAATCGTGGGA+GGG 0.628358 8_1:+62769940 None:intergenic
GCTGCTAGAAGTTGTTAAGG+TGG 0.637704 8_1:+62770212 None:intergenic
AAAGTTGAAGTAATCGTGGG+AGG 0.640378 8_1:+62769939 None:intergenic
TGAGAAGGTATAAAGAAGGG+TGG 0.652792 8_1:-62768877 Msa1206040:CDS
GTTGTCACCACAGTCAGCGG+TGG 0.658729 8_1:-62769457 Msa1206040:intron
CAAAACCTTAACATCCGCGT+CGG 0.669594 8_1:-62769713 Msa1206040:CDS
GTCGTGGAAGGATAAGCCGG+TGG 0.674105 8_1:-62768810 Msa1206040:CDS
TATTCCGGCATCACCATCGG+AGG 0.676733 8_1:+62768838 None:intergenic
CATGTTCCTTCGATTCAACG+AGG 0.690083 8_1:-62769684 Msa1206040:CDS
TGGAGGAGGAGGTTGCATGG+TGG 0.690855 8_1:-62768956 Msa1206040:CDS
GTTGTCGGAAAATGCACGTG+CGG 0.703618 8_1:+62769873 None:intergenic
AGAGACGTGAAACAGCGTCA+CGG 0.722636 8_1:-62768979 Msa1206040:CDS
ATGCACGTGCGGTTTCAAGG+AGG 0.744530 8_1:+62769884 None:intergenic
AAGATATAAACAAATCACGG+TGG 0.755243 8_1:+62769239 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGTTTGGTAATTAATTTA+GGG - chr8_1:62770090-62770109 Msa1206040:CDS 15.0%
!! TGTATTAAAAAAGGAATTAA+CGG - chr8_1:62770146-62770165 Msa1206040:CDS 15.0%
!!! ATTTTTGTTTACATAAGAAT+AGG - chr8_1:62770246-62770265 Msa1206040:CDS 15.0%
!!! TTTTTGTTTACATAAGAATA+GGG - chr8_1:62770247-62770266 Msa1206040:CDS 15.0%
!!! TAAGTTTGGTAATTAATTTA+GGG - chr8_1:62770090-62770109 Msa1206040:CDS 15.0%
!! TGTATTAAAAAAGGAATTAA+CGG - chr8_1:62770146-62770165 Msa1206040:CDS 15.0%
!!! ATTTTTGTTTACATAAGAAT+AGG - chr8_1:62770246-62770265 Msa1206040:CDS 15.0%
!!! TTTTTGTTTACATAAGAATA+GGG - chr8_1:62770247-62770266 Msa1206040:CDS 15.0%
!! TATCAATTATGTGAAGTTTA+GGG + chr8_1:62769154-62769173 None:intergenic 20.0%
!! ATATCAATTATGTGAAGTTT+AGG + chr8_1:62769155-62769174 None:intergenic 20.0%
!!! CATATTTTGATCAATGAAAA+AGG + chr8_1:62770070-62770089 None:intergenic 20.0%
!! TTGATCAAAATATGTAAGTT+TGG - chr8_1:62770076-62770095 Msa1206040:CDS 20.0%
!!! GTAAGTTTGGTAATTAATTT+AGG - chr8_1:62770089-62770108 Msa1206040:CDS 20.0%
!!! AAGTTTGGTAATTAATTTAG+GGG - chr8_1:62770091-62770110 Msa1206040:CDS 20.0%
!!! AACGGAGTAAAATATTTTTT+TGG - chr8_1:62770164-62770183 Msa1206040:CDS 20.0%
!!! ACGGAGTAAAATATTTTTTT+GGG - chr8_1:62770165-62770184 Msa1206040:CDS 20.0%
!! TATCAATTATGTGAAGTTTA+GGG + chr8_1:62769154-62769173 None:intergenic 20.0%
!! ATATCAATTATGTGAAGTTT+AGG + chr8_1:62769155-62769174 None:intergenic 20.0%
!!! CATATTTTGATCAATGAAAA+AGG + chr8_1:62770070-62770089 None:intergenic 20.0%
!! TTGATCAAAATATGTAAGTT+TGG - chr8_1:62770076-62770095 Msa1206040:CDS 20.0%
!!! GTAAGTTTGGTAATTAATTT+AGG - chr8_1:62770089-62770108 Msa1206040:CDS 20.0%
!!! AAGTTTGGTAATTAATTTAG+GGG - chr8_1:62770091-62770110 Msa1206040:CDS 20.0%
!!! AACGGAGTAAAATATTTTTT+TGG - chr8_1:62770164-62770183 Msa1206040:CDS 20.0%
!!! ACGGAGTAAAATATTTTTTT+GGG - chr8_1:62770165-62770184 Msa1206040:CDS 20.0%
!! CTTCAACAACTTTTATTACA+TGG - chr8_1:62768593-62768612 Msa1206040:three_prime_UTR 25.0%
! TATTAAAGAAGATGAAGCTT+TGG - chr8_1:62769412-62769431 Msa1206040:CDS 25.0%
! GCAAAGATATAAACAAATCA+CGG + chr8_1:62769487-62769506 None:intergenic 25.0%
!!! TTTAGAAGTTTGTTTTGGTT+CGG - chr8_1:62769556-62769575 Msa1206040:intron 25.0%
!!! GTTTTAAAGAGTGTTTAAGA+TGG - chr8_1:62769591-62769610 Msa1206040:intron 25.0%
!! GAGTAATTTTCACTGTTATA+TGG - chr8_1:62770041-62770060 Msa1206040:CDS 25.0%
! AGTATAAGAGGATTGATTAA+AGG - chr8_1:62770114-62770133 Msa1206040:CDS 25.0%
! GTATAAGAGGATTGATTAAA+GGG - chr8_1:62770115-62770134 Msa1206040:CDS 25.0%
!! GAGTTTGCTTGTATTAAAAA+AGG - chr8_1:62770137-62770156 Msa1206040:CDS 25.0%
!! CTTCAACAACTTTTATTACA+TGG - chr8_1:62768593-62768612 Msa1206040:three_prime_UTR 25.0%
! TATTAAAGAAGATGAAGCTT+TGG - chr8_1:62769412-62769431 Msa1206040:CDS 25.0%
! GCAAAGATATAAACAAATCA+CGG + chr8_1:62769487-62769506 None:intergenic 25.0%
!!! TTTAGAAGTTTGTTTTGGTT+CGG - chr8_1:62769556-62769575 Msa1206040:intron 25.0%
!!! GTTTTAAAGAGTGTTTAAGA+TGG - chr8_1:62769591-62769610 Msa1206040:intron 25.0%
!! GAGTAATTTTCACTGTTATA+TGG - chr8_1:62770041-62770060 Msa1206040:CDS 25.0%
! AGTATAAGAGGATTGATTAA+AGG - chr8_1:62770114-62770133 Msa1206040:CDS 25.0%
! GTATAAGAGGATTGATTAAA+GGG - chr8_1:62770115-62770134 Msa1206040:CDS 25.0%
!! GAGTTTGCTTGTATTAAAAA+AGG - chr8_1:62770137-62770156 Msa1206040:CDS 25.0%
! TTGATATGTTGTTTGTCTTG+AGG + chr8_1:62768541-62768560 None:intergenic 30.0%
!! TAAGTAGTGTTTGTTGTGTT+TGG + chr8_1:62768714-62768733 None:intergenic 30.0%
GAAAGAGTAATTATCAGTTG+TGG + chr8_1:62768757-62768776 None:intergenic 30.0%
TTCAAAGTTGAAGTAATCGT+GGG + chr8_1:62768787-62768806 None:intergenic 30.0%
ATTCAAAGTTGAAGTAATCG+TGG + chr8_1:62768788-62768807 None:intergenic 30.0%
TACTTCAACTTTGAATTCTC+CGG - chr8_1:62768792-62768811 Msa1206040:CDS 30.0%
CAAAAAGTCATGAAGGAAAT+CGG - chr8_1:62769293-62769312 Msa1206040:CDS 30.0%
AACTCTTTACATTCGATATC+CGG - chr8_1:62769449-62769468 Msa1206040:intron 30.0%
AAGATATAAACAAATCACGG+TGG + chr8_1:62769484-62769503 None:intergenic 30.0%
TTGTTTATATCTTTGCTTCG+TGG - chr8_1:62769491-62769510 Msa1206040:intron 30.0%
TGTTTATATCTTTGCTTCGT+GGG - chr8_1:62769492-62769511 Msa1206040:intron 30.0%
TCAACAATAGTTAAAACCCT+AGG + chr8_1:62769524-62769543 None:intergenic 30.0%
!!! GGTTTTAACTATTGTTGAAG+AGG - chr8_1:62769526-62769545 Msa1206040:intron 30.0%
!! GCTGATTTAGAAGTTTGTTT+TGG - chr8_1:62769551-62769570 Msa1206040:intron 30.0%
!! AAGAGTGTTTAAGATGGTTT+AGG - chr8_1:62769597-62769616 Msa1206040:CDS 30.0%
! AGAGTGTTTAAGATGGTTTA+GGG - chr8_1:62769598-62769617 Msa1206040:CDS 30.0%
! ATGAAGTTTGTGATGATGTT+AGG - chr8_1:62769813-62769832 Msa1206040:CDS 30.0%
! TGAAGTTTGTGATGATGTTA+GGG - chr8_1:62769814-62769833 Msa1206040:CDS 30.0%
! TTGTTGAGAAGGTATAAAGA+AGG - chr8_1:62769839-62769858 Msa1206040:CDS 30.0%
! TGTTGAGAAGGTATAAAGAA+GGG - chr8_1:62769840-62769859 Msa1206040:CDS 30.0%
!! ACACGTGCTCTAAATTTTAT+TGG - chr8_1:62769987-62770006 Msa1206040:CDS 30.0%
! TTAATTTAGGGGAGTATAAG+AGG - chr8_1:62770102-62770121 Msa1206040:CDS 30.0%
TTTACATAAGAATAGGGTTG+TGG - chr8_1:62770253-62770272 Msa1206040:CDS 30.0%
! TTGATATGTTGTTTGTCTTG+AGG + chr8_1:62768541-62768560 None:intergenic 30.0%
!! TAAGTAGTGTTTGTTGTGTT+TGG + chr8_1:62768714-62768733 None:intergenic 30.0%
GAAAGAGTAATTATCAGTTG+TGG + chr8_1:62768757-62768776 None:intergenic 30.0%
TTCAAAGTTGAAGTAATCGT+GGG + chr8_1:62768787-62768806 None:intergenic 30.0%
ATTCAAAGTTGAAGTAATCG+TGG + chr8_1:62768788-62768807 None:intergenic 30.0%
TACTTCAACTTTGAATTCTC+CGG - chr8_1:62768792-62768811 Msa1206040:CDS 30.0%
CAAAAAGTCATGAAGGAAAT+CGG - chr8_1:62769293-62769312 Msa1206040:CDS 30.0%
AACTCTTTACATTCGATATC+CGG - chr8_1:62769449-62769468 Msa1206040:intron 30.0%
AAGATATAAACAAATCACGG+TGG + chr8_1:62769484-62769503 None:intergenic 30.0%
TTGTTTATATCTTTGCTTCG+TGG - chr8_1:62769491-62769510 Msa1206040:intron 30.0%
TGTTTATATCTTTGCTTCGT+GGG - chr8_1:62769492-62769511 Msa1206040:intron 30.0%
TCAACAATAGTTAAAACCCT+AGG + chr8_1:62769524-62769543 None:intergenic 30.0%
!!! GGTTTTAACTATTGTTGAAG+AGG - chr8_1:62769526-62769545 Msa1206040:intron 30.0%
!! GCTGATTTAGAAGTTTGTTT+TGG - chr8_1:62769551-62769570 Msa1206040:intron 30.0%
!! AAGAGTGTTTAAGATGGTTT+AGG - chr8_1:62769597-62769616 Msa1206040:CDS 30.0%
! AGAGTGTTTAAGATGGTTTA+GGG - chr8_1:62769598-62769617 Msa1206040:CDS 30.0%
! ATGAAGTTTGTGATGATGTT+AGG - chr8_1:62769813-62769832 Msa1206040:CDS 30.0%
! TGAAGTTTGTGATGATGTTA+GGG - chr8_1:62769814-62769833 Msa1206040:CDS 30.0%
! TTGTTGAGAAGGTATAAAGA+AGG - chr8_1:62769839-62769858 Msa1206040:CDS 30.0%
! TGTTGAGAAGGTATAAAGAA+GGG - chr8_1:62769840-62769859 Msa1206040:CDS 30.0%
!! ACACGTGCTCTAAATTTTAT+TGG - chr8_1:62769987-62770006 Msa1206040:CDS 30.0%
! TTAATTTAGGGGAGTATAAG+AGG - chr8_1:62770102-62770121 Msa1206040:CDS 30.0%
TTTACATAAGAATAGGGTTG+TGG - chr8_1:62770253-62770272 Msa1206040:CDS 30.0%
ATTCTTCGTCTTCTTCTTGT+TGG + chr8_1:62768572-62768591 None:intergenic 35.0%
!! GTGTTGTTTAGAAGAAGATG+AGG + chr8_1:62768649-62768668 None:intergenic 35.0%
!! ATAGTAGTAGTGGATGCATA+AGG + chr8_1:62768684-62768703 None:intergenic 35.0%
AGTAATTATCAGTTGTGGTG+GGG + chr8_1:62768752-62768771 None:intergenic 35.0%
GAGTAATTATCAGTTGTGGT+GGG + chr8_1:62768753-62768772 None:intergenic 35.0%
AGAGTAATTATCAGTTGTGG+TGG + chr8_1:62768754-62768773 None:intergenic 35.0%
!! GCTATCTTAGAAGCATTAGA+AGG - chr8_1:62769125-62769144 Msa1206040:CDS 35.0%
! CAAGGATGGAAAAATTTGCT+AGG - chr8_1:62769318-62769337 Msa1206040:CDS 35.0%
!! GAAAAATTTGCTAGGCTCAT+GGG - chr8_1:62769326-62769345 Msa1206040:CDS 35.0%
TTTCAAGAACAAGTAGTGAG+AGG - chr8_1:62769648-62769667 Msa1206040:CDS 35.0%
!! TGGAAGAGGTATTGTTGATT+TGG - chr8_1:62769691-62769710 Msa1206040:CDS 35.0%
ATTCTTCGTCTTCTTCTTGT+TGG + chr8_1:62768572-62768591 None:intergenic 35.0%
!! GTGTTGTTTAGAAGAAGATG+AGG + chr8_1:62768649-62768668 None:intergenic 35.0%
!! ATAGTAGTAGTGGATGCATA+AGG + chr8_1:62768684-62768703 None:intergenic 35.0%
AGTAATTATCAGTTGTGGTG+GGG + chr8_1:62768752-62768771 None:intergenic 35.0%
GAGTAATTATCAGTTGTGGT+GGG + chr8_1:62768753-62768772 None:intergenic 35.0%
AGAGTAATTATCAGTTGTGG+TGG + chr8_1:62768754-62768773 None:intergenic 35.0%
!! GCTATCTTAGAAGCATTAGA+AGG - chr8_1:62769125-62769144 Msa1206040:CDS 35.0%
! CAAGGATGGAAAAATTTGCT+AGG - chr8_1:62769318-62769337 Msa1206040:CDS 35.0%
!! GAAAAATTTGCTAGGCTCAT+GGG - chr8_1:62769326-62769345 Msa1206040:CDS 35.0%
TTTCAAGAACAAGTAGTGAG+AGG - chr8_1:62769648-62769667 Msa1206040:CDS 35.0%
!! TGGAAGAGGTATTGTTGATT+TGG - chr8_1:62769691-62769710 Msa1206040:CDS 35.0%
AGAGCTGCTAGAAGTTGTTA+AGG + chr8_1:62768514-62768533 None:intergenic 40.0%
TGGAGTAGTGATAGTAGTAG+TGG + chr8_1:62768694-62768713 None:intergenic 40.0%
GTAATTATCAGTTGTGGTGG+GGG + chr8_1:62768751-62768770 None:intergenic 40.0%
AAGTTGAAGTAATCGTGGGA+GGG + chr8_1:62768783-62768802 None:intergenic 40.0%
AAAGTTGAAGTAATCGTGGG+AGG + chr8_1:62768784-62768803 None:intergenic 40.0%
! GATTCGGTTTGTGTTGTTGT+CGG + chr8_1:62768865-62768884 None:intergenic 40.0%
TCCACATGAGTTGTTGGATT+CGG + chr8_1:62768881-62768900 None:intergenic 40.0%
TTAGCATCCACATGAGTTGT+TGG + chr8_1:62768887-62768906 None:intergenic 40.0%
TTTGATCTGTGTCACCGTAT+GGG + chr8_1:62768923-62768942 None:intergenic 40.0%
! TTTTGATCTGTGTCACCGTA+TGG + chr8_1:62768924-62768943 None:intergenic 40.0%
AGTTCCAAGAAGTTAGTCCA+TGG - chr8_1:62769072-62769091 Msa1206040:CDS 40.0%
! TTGTCCATGGACTAACTTCT+TGG + chr8_1:62769079-62769098 None:intergenic 40.0%
GCAACACTTATTGCACTCAA+TGG - chr8_1:62769177-62769196 Msa1206040:CDS 40.0%
TGGTGACAACAGTGGTTAAA+CGG + chr8_1:62769253-62769272 None:intergenic 40.0%
! TCATGAAGGAAATCGGTTCA+AGG - chr8_1:62769300-62769319 Msa1206040:CDS 40.0%
!! GGAAAAATTTGCTAGGCTCA+TGG - chr8_1:62769325-62769344 Msa1206040:CDS 40.0%
AAACAAATCACGGTGGTTTC+CGG + chr8_1:62769477-62769496 None:intergenic 40.0%
!!! TTGTTTTGGTTCGGATTTCG+TGG - chr8_1:62769565-62769584 Msa1206040:intron 40.0%
TTGATGCTAGAAAGAGAAGC+TGG - chr8_1:62769671-62769690 Msa1206040:CDS 40.0%
TTGTGACCCTTATGAGTCAA+TGG - chr8_1:62769718-62769737 Msa1206040:CDS 40.0%
!! GTCTCTCCATTGACTCATAA+GGG + chr8_1:62769727-62769746 None:intergenic 40.0%
!! ATGTTAGGGCTTTGTTGAGA+AGG - chr8_1:62769828-62769847 Msa1206040:CDS 40.0%
! TGAGAAGGTATAAAGAAGGG+TGG - chr8_1:62769843-62769862 Msa1206040:CDS 40.0%
CTTCCACGACAAGAATATTC+CGG + chr8_1:62769900-62769919 None:intergenic 40.0%
! ATTTTATTGGCACGTGCGTT+TGG - chr8_1:62770000-62770019 Msa1206040:CDS 40.0%
! TTTTATTGGCACGTGCGTTT+GGG - chr8_1:62770001-62770020 Msa1206040:CDS 40.0%
AGAGCTGCTAGAAGTTGTTA+AGG + chr8_1:62768514-62768533 None:intergenic 40.0%
TGGAGTAGTGATAGTAGTAG+TGG + chr8_1:62768694-62768713 None:intergenic 40.0%
GTAATTATCAGTTGTGGTGG+GGG + chr8_1:62768751-62768770 None:intergenic 40.0%
AAGTTGAAGTAATCGTGGGA+GGG + chr8_1:62768783-62768802 None:intergenic 40.0%
AAAGTTGAAGTAATCGTGGG+AGG + chr8_1:62768784-62768803 None:intergenic 40.0%
! GATTCGGTTTGTGTTGTTGT+CGG + chr8_1:62768865-62768884 None:intergenic 40.0%
TCCACATGAGTTGTTGGATT+CGG + chr8_1:62768881-62768900 None:intergenic 40.0%
TTAGCATCCACATGAGTTGT+TGG + chr8_1:62768887-62768906 None:intergenic 40.0%
TTTGATCTGTGTCACCGTAT+GGG + chr8_1:62768923-62768942 None:intergenic 40.0%
! TTTTGATCTGTGTCACCGTA+TGG + chr8_1:62768924-62768943 None:intergenic 40.0%
AGTTCCAAGAAGTTAGTCCA+TGG - chr8_1:62769072-62769091 Msa1206040:CDS 40.0%
! TTGTCCATGGACTAACTTCT+TGG + chr8_1:62769079-62769098 None:intergenic 40.0%
GCAACACTTATTGCACTCAA+TGG - chr8_1:62769177-62769196 Msa1206040:CDS 40.0%
TGGTGACAACAGTGGTTAAA+CGG + chr8_1:62769253-62769272 None:intergenic 40.0%
! TCATGAAGGAAATCGGTTCA+AGG - chr8_1:62769300-62769319 Msa1206040:CDS 40.0%
!! GGAAAAATTTGCTAGGCTCA+TGG - chr8_1:62769325-62769344 Msa1206040:CDS 40.0%
AAACAAATCACGGTGGTTTC+CGG + chr8_1:62769477-62769496 None:intergenic 40.0%
!!! TTGTTTTGGTTCGGATTTCG+TGG - chr8_1:62769565-62769584 Msa1206040:intron 40.0%
TTGATGCTAGAAAGAGAAGC+TGG - chr8_1:62769671-62769690 Msa1206040:CDS 40.0%
TTGTGACCCTTATGAGTCAA+TGG - chr8_1:62769718-62769737 Msa1206040:CDS 40.0%
!! GTCTCTCCATTGACTCATAA+GGG + chr8_1:62769727-62769746 None:intergenic 40.0%
!! ATGTTAGGGCTTTGTTGAGA+AGG - chr8_1:62769828-62769847 Msa1206040:CDS 40.0%
! TGAGAAGGTATAAAGAAGGG+TGG - chr8_1:62769843-62769862 Msa1206040:CDS 40.0%
CTTCCACGACAAGAATATTC+CGG + chr8_1:62769900-62769919 None:intergenic 40.0%
! ATTTTATTGGCACGTGCGTT+TGG - chr8_1:62770000-62770019 Msa1206040:CDS 40.0%
! TTTTATTGGCACGTGCGTTT+GGG - chr8_1:62770001-62770020 Msa1206040:CDS 40.0%
! AGAAGTTGTTAAGGTGGTGG+TGG + chr8_1:62768505-62768524 None:intergenic 45.0%
GCTAGAAGTTGTTAAGGTGG+TGG + chr8_1:62768508-62768527 None:intergenic 45.0%
GCTGCTAGAAGTTGTTAAGG+TGG + chr8_1:62768511-62768530 None:intergenic 45.0%
TTGAATTCTCCGGCAACTCA+TGG - chr8_1:62768802-62768821 Msa1206040:CDS 45.0%
! GTTTTGTGACCATGAGTTGC+CGG + chr8_1:62768814-62768833 None:intergenic 45.0%
AAAATGCACGTGCGGTTTCA+AGG + chr8_1:62768842-62768861 None:intergenic 45.0%
ACCGAATCCAACAACTCATG+TGG - chr8_1:62768877-62768896 Msa1206040:CDS 45.0%
AACGAGCTTAGTTCCCCATA+CGG - chr8_1:62768906-62768925 Msa1206040:CDS 45.0%
TTGATCTGTGTCACCGTATG+GGG + chr8_1:62768922-62768941 None:intergenic 45.0%
!! CGCGGATGTTAAGGTTTTGT+AGG + chr8_1:62769006-62769025 None:intergenic 45.0%
CAAAACCTTAACATCCGCGT+CGG - chr8_1:62769007-62769026 Msa1206040:CDS 45.0%
! TTTTTCCGACGCGGATGTTA+AGG + chr8_1:62769015-62769034 None:intergenic 45.0%
!!! GGAACATGTTTTTTCCGACG+CGG + chr8_1:62769024-62769043 None:intergenic 45.0%
CATGTTCCTTCGATTCAACG+AGG - chr8_1:62769036-62769055 Msa1206040:CDS 45.0%
CATCTTCCTCGTTGAATCGA+AGG + chr8_1:62769045-62769064 None:intergenic 45.0%
GTTAGTCCATGGACAACGTT+TGG - chr8_1:62769083-62769102 Msa1206040:CDS 45.0%
!! TGCTTCTAAGATAGCACCGT+TGG + chr8_1:62769120-62769139 None:intergenic 45.0%
TGACAACAGTGGTTAAACGG+AGG + chr8_1:62769250-62769269 None:intergenic 45.0%
! CTCGGTGCAAAAAGTCATGA+AGG - chr8_1:62769286-62769305 Msa1206040:CDS 45.0%
! GAAGGAAATCGGTTCAAGGA+TGG - chr8_1:62769304-62769323 Msa1206040:CDS 45.0%
TTACATTCGATATCCGGAGC+CGG - chr8_1:62769455-62769474 Msa1206040:intron 45.0%
!! TTTGGTTCGGATTTCGTGGA+AGG - chr8_1:62769569-62769588 Msa1206040:intron 45.0%
CTAGAAAGAGAAGCTGGAAG+AGG - chr8_1:62769677-62769696 Msa1206040:CDS 45.0%
!! CGTCTCTCCATTGACTCATA+AGG + chr8_1:62769728-62769747 None:intergenic 45.0%
!! GCATGGTGGTGGGTTTAATA+CGG - chr8_1:62769778-62769797 Msa1206040:CDS 45.0%
GAATATTCCGGCATCACCAT+CGG + chr8_1:62769888-62769907 None:intergenic 45.0%
ATGCCGGAATATTCTTGTCG+TGG - chr8_1:62769894-62769913 Msa1206040:CDS 45.0%
CGGAATATTCTTGTCGTGGA+AGG - chr8_1:62769898-62769917 Msa1206040:CDS 45.0%
! AGAAGTTGTTAAGGTGGTGG+TGG + chr8_1:62768505-62768524 None:intergenic 45.0%
GCTAGAAGTTGTTAAGGTGG+TGG + chr8_1:62768508-62768527 None:intergenic 45.0%
GCTGCTAGAAGTTGTTAAGG+TGG + chr8_1:62768511-62768530 None:intergenic 45.0%
TTGAATTCTCCGGCAACTCA+TGG - chr8_1:62768802-62768821 Msa1206040:CDS 45.0%
! GTTTTGTGACCATGAGTTGC+CGG + chr8_1:62768814-62768833 None:intergenic 45.0%
AAAATGCACGTGCGGTTTCA+AGG + chr8_1:62768842-62768861 None:intergenic 45.0%
ACCGAATCCAACAACTCATG+TGG - chr8_1:62768877-62768896 Msa1206040:CDS 45.0%
AACGAGCTTAGTTCCCCATA+CGG - chr8_1:62768906-62768925 Msa1206040:CDS 45.0%
TTGATCTGTGTCACCGTATG+GGG + chr8_1:62768922-62768941 None:intergenic 45.0%
!! CGCGGATGTTAAGGTTTTGT+AGG + chr8_1:62769006-62769025 None:intergenic 45.0%
CAAAACCTTAACATCCGCGT+CGG - chr8_1:62769007-62769026 Msa1206040:CDS 45.0%
! TTTTTCCGACGCGGATGTTA+AGG + chr8_1:62769015-62769034 None:intergenic 45.0%
!!! GGAACATGTTTTTTCCGACG+CGG + chr8_1:62769024-62769043 None:intergenic 45.0%
CATGTTCCTTCGATTCAACG+AGG - chr8_1:62769036-62769055 Msa1206040:CDS 45.0%
CATCTTCCTCGTTGAATCGA+AGG + chr8_1:62769045-62769064 None:intergenic 45.0%
GTTAGTCCATGGACAACGTT+TGG - chr8_1:62769083-62769102 Msa1206040:CDS 45.0%
!! TGCTTCTAAGATAGCACCGT+TGG + chr8_1:62769120-62769139 None:intergenic 45.0%
TGACAACAGTGGTTAAACGG+AGG + chr8_1:62769250-62769269 None:intergenic 45.0%
! CTCGGTGCAAAAAGTCATGA+AGG - chr8_1:62769286-62769305 Msa1206040:CDS 45.0%
! GAAGGAAATCGGTTCAAGGA+TGG - chr8_1:62769304-62769323 Msa1206040:CDS 45.0%
TTACATTCGATATCCGGAGC+CGG - chr8_1:62769455-62769474 Msa1206040:intron 45.0%
!! TTTGGTTCGGATTTCGTGGA+AGG - chr8_1:62769569-62769588 Msa1206040:intron 45.0%
CTAGAAAGAGAAGCTGGAAG+AGG - chr8_1:62769677-62769696 Msa1206040:CDS 45.0%
!! CGTCTCTCCATTGACTCATA+AGG + chr8_1:62769728-62769747 None:intergenic 45.0%
!! GCATGGTGGTGGGTTTAATA+CGG - chr8_1:62769778-62769797 Msa1206040:CDS 45.0%
GAATATTCCGGCATCACCAT+CGG + chr8_1:62769888-62769907 None:intergenic 45.0%
ATGCCGGAATATTCTTGTCG+TGG - chr8_1:62769894-62769913 Msa1206040:CDS 45.0%
CGGAATATTCTTGTCGTGGA+AGG - chr8_1:62769898-62769917 Msa1206040:CDS 45.0%
!!! AAAATAATTTTGAATTTAAA+CGG + chr8_1:62769356-62769375 None:intergenic 5.0%
!!! AAAATAATTTTGAATTTAAA+CGG + chr8_1:62769356-62769375 None:intergenic 5.0%
!! GTGGAGTTGATGGAAGGATC+AGG + chr8_1:62768486-62768505 None:intergenic 50.0%
!! TAAGGTGGTGGTGGAGTTGA+TGG + chr8_1:62768496-62768515 None:intergenic 50.0%
GTTGTCGGAAAATGCACGTG+CGG + chr8_1:62768850-62768869 None:intergenic 50.0%
GTTTAGTCGCATGAACGACG+CGG - chr8_1:62768971-62768990 Msa1206040:CDS 50.0%
TTTAGTCGCATGAACGACGC+GGG - chr8_1:62768972-62768991 Msa1206040:CDS 50.0%
ACGTGTCCAAACGTTGTCCA+TGG + chr8_1:62769092-62769111 None:intergenic 50.0%
ATGGACAACGTTTGGACACG+TGG - chr8_1:62769091-62769110 Msa1206040:CDS 50.0%
ACAGTGGTTAAACGGAGGTG+AGG + chr8_1:62769245-62769264 None:intergenic 50.0%
ACTGTTGTCACCACAGTCAG+CGG - chr8_1:62769260-62769279 Msa1206040:CDS 50.0%
!! TGCTTCGTGGGTTAGAACCT+AGG - chr8_1:62769504-62769523 Msa1206040:intron 50.0%
!! GCTTCGTGGGTTAGAACCTA+GGG - chr8_1:62769505-62769524 Msa1206040:intron 50.0%
AGAGACGTGAAACAGCGTCA+CGG - chr8_1:62769741-62769760 Msa1206040:CDS 50.0%
ATGACACAGTGTTCCTCCGA+TGG - chr8_1:62769869-62769888 Msa1206040:CDS 50.0%
CTTGTCGTGGAAGGATAAGC+CGG - chr8_1:62769907-62769926 Msa1206040:CDS 50.0%
! CACGTGCGTTTGGGATTCAT+TGG - chr8_1:62770010-62770029 Msa1206040:CDS 50.0%
!! GTGGAGTTGATGGAAGGATC+AGG + chr8_1:62768486-62768505 None:intergenic 50.0%
!! TAAGGTGGTGGTGGAGTTGA+TGG + chr8_1:62768496-62768515 None:intergenic 50.0%
GTTGTCGGAAAATGCACGTG+CGG + chr8_1:62768850-62768869 None:intergenic 50.0%
GTTTAGTCGCATGAACGACG+CGG - chr8_1:62768971-62768990 Msa1206040:CDS 50.0%
TTTAGTCGCATGAACGACGC+GGG - chr8_1:62768972-62768991 Msa1206040:CDS 50.0%
ACGTGTCCAAACGTTGTCCA+TGG + chr8_1:62769092-62769111 None:intergenic 50.0%
ATGGACAACGTTTGGACACG+TGG - chr8_1:62769091-62769110 Msa1206040:CDS 50.0%
ACAGTGGTTAAACGGAGGTG+AGG + chr8_1:62769245-62769264 None:intergenic 50.0%
ACTGTTGTCACCACAGTCAG+CGG - chr8_1:62769260-62769279 Msa1206040:CDS 50.0%
!! TGCTTCGTGGGTTAGAACCT+AGG - chr8_1:62769504-62769523 Msa1206040:intron 50.0%
!! GCTTCGTGGGTTAGAACCTA+GGG - chr8_1:62769505-62769524 Msa1206040:intron 50.0%
AGAGACGTGAAACAGCGTCA+CGG - chr8_1:62769741-62769760 Msa1206040:CDS 50.0%
ATGACACAGTGTTCCTCCGA+TGG - chr8_1:62769869-62769888 Msa1206040:CDS 50.0%
CTTGTCGTGGAAGGATAAGC+CGG - chr8_1:62769907-62769926 Msa1206040:CDS 50.0%
! CACGTGCGTTTGGGATTCAT+TGG - chr8_1:62770010-62770029 Msa1206040:CDS 50.0%
!! GTGGTGGTGGAGTTGATGGA+AGG + chr8_1:62768492-62768511 None:intergenic 55.0%
ATGCACGTGCGGTTTCAAGG+AGG + chr8_1:62768839-62768858 None:intergenic 55.0%
TTTGGACACGTGGCAGCCAA+CGG - chr8_1:62769101-62769120 Msa1206040:CDS 55.0%
ACGGAGGTGAGGCGTATCAT+CGG + chr8_1:62769234-62769253 None:intergenic 55.0%
GCTGACTGTGGTGACAACAG+TGG + chr8_1:62769261-62769280 None:intergenic 55.0%
! TGTTCCTCCGATGGTGATGC+CGG - chr8_1:62769878-62769897 Msa1206040:CDS 55.0%
TATTCCGGCATCACCATCGG+AGG + chr8_1:62769885-62769904 None:intergenic 55.0%
GAAGGATAAGCCGGTGGTGT+GGG - chr8_1:62769916-62769935 Msa1206040:CDS 55.0%
ACCTCAAGGCCTCCATACAC+TGG + chr8_1:62769942-62769961 None:intergenic 55.0%
AGTGTATGGAGGCCTTGAGG+TGG - chr8_1:62769941-62769960 Msa1206040:CDS 55.0%
!! GTGGTGGTGGAGTTGATGGA+AGG + chr8_1:62768492-62768511 None:intergenic 55.0%
ATGCACGTGCGGTTTCAAGG+AGG + chr8_1:62768839-62768858 None:intergenic 55.0%
TTTGGACACGTGGCAGCCAA+CGG - chr8_1:62769101-62769120 Msa1206040:CDS 55.0%
ACGGAGGTGAGGCGTATCAT+CGG + chr8_1:62769234-62769253 None:intergenic 55.0%
GCTGACTGTGGTGACAACAG+TGG + chr8_1:62769261-62769280 None:intergenic 55.0%
! TGTTCCTCCGATGGTGATGC+CGG - chr8_1:62769878-62769897 Msa1206040:CDS 55.0%
TATTCCGGCATCACCATCGG+AGG + chr8_1:62769885-62769904 None:intergenic 55.0%
GAAGGATAAGCCGGTGGTGT+GGG - chr8_1:62769916-62769935 Msa1206040:CDS 55.0%
ACCTCAAGGCCTCCATACAC+TGG + chr8_1:62769942-62769961 None:intergenic 55.0%
AGTGTATGGAGGCCTTGAGG+TGG - chr8_1:62769941-62769960 Msa1206040:CDS 55.0%
GCCAACACTCCTCGAAGCGT+TGG - chr8_1:62769199-62769218 Msa1206040:CDS 60.0%
! GCCAACGCTTCGAGGAGTGT+TGG + chr8_1:62769203-62769222 None:intergenic 60.0%
GTGAGGCGTATCATCGGAGC+GGG + chr8_1:62769228-62769247 None:intergenic 60.0%
GGTGAGGCGTATCATCGGAG+CGG + chr8_1:62769229-62769248 None:intergenic 60.0%
GTTGTCACCACAGTCAGCGG+TGG - chr8_1:62769263-62769282 Msa1206040:CDS 60.0%
ATCACGGTGGTTTCCGGCTC+CGG + chr8_1:62769471-62769490 None:intergenic 60.0%
GACGTGAAACAGCGTCACGG+TGG - chr8_1:62769744-62769763 Msa1206040:CDS 60.0%
GTGAAACAGCGTCACGGTGG+AGG - chr8_1:62769747-62769766 Msa1206040:intron 60.0%
AAACAGCGTCACGGTGGAGG+AGG - chr8_1:62769750-62769769 Msa1206040:intron 60.0%
TGGAGGAGGAGGTTGCATGG+TGG - chr8_1:62769764-62769783 Msa1206040:intron 60.0%
AGGAGGAGGTTGCATGGTGG+TGG - chr8_1:62769767-62769786 Msa1206040:intron 60.0%
GGAGGAGGTTGCATGGTGGT+GGG - chr8_1:62769768-62769787 Msa1206040:intron 60.0%
GTCGTGGAAGGATAAGCCGG+TGG - chr8_1:62769910-62769929 Msa1206040:CDS 60.0%
GGAAGGATAAGCCGGTGGTG+TGG - chr8_1:62769915-62769934 Msa1206040:CDS 60.0%
CATACACTGGCCCACACCAC+CGG + chr8_1:62769929-62769948 None:intergenic 60.0%
TGGTGTGGGCCAGTGTATGG+AGG - chr8_1:62769930-62769949 Msa1206040:CDS 60.0%
GCCAGTGTATGGAGGCCTTG+AGG - chr8_1:62769938-62769957 Msa1206040:CDS 60.0%
!! AGGTGGCGCTGACATGGCAT+GGG - chr8_1:62769958-62769977 Msa1206040:CDS 60.0%
GCCAACACTCCTCGAAGCGT+TGG - chr8_1:62769199-62769218 Msa1206040:CDS 60.0%
! GCCAACGCTTCGAGGAGTGT+TGG + chr8_1:62769203-62769222 None:intergenic 60.0%
GTGAGGCGTATCATCGGAGC+GGG + chr8_1:62769228-62769247 None:intergenic 60.0%
GGTGAGGCGTATCATCGGAG+CGG + chr8_1:62769229-62769248 None:intergenic 60.0%
GTTGTCACCACAGTCAGCGG+TGG - chr8_1:62769263-62769282 Msa1206040:CDS 60.0%
ATCACGGTGGTTTCCGGCTC+CGG + chr8_1:62769471-62769490 None:intergenic 60.0%
GACGTGAAACAGCGTCACGG+TGG - chr8_1:62769744-62769763 Msa1206040:CDS 60.0%
GTGAAACAGCGTCACGGTGG+AGG - chr8_1:62769747-62769766 Msa1206040:intron 60.0%
AAACAGCGTCACGGTGGAGG+AGG - chr8_1:62769750-62769769 Msa1206040:intron 60.0%
TGGAGGAGGAGGTTGCATGG+TGG - chr8_1:62769764-62769783 Msa1206040:intron 60.0%
AGGAGGAGGTTGCATGGTGG+TGG - chr8_1:62769767-62769786 Msa1206040:intron 60.0%
GGAGGAGGTTGCATGGTGGT+GGG - chr8_1:62769768-62769787 Msa1206040:intron 60.0%
GTCGTGGAAGGATAAGCCGG+TGG - chr8_1:62769910-62769929 Msa1206040:CDS 60.0%
GGAAGGATAAGCCGGTGGTG+TGG - chr8_1:62769915-62769934 Msa1206040:CDS 60.0%
CATACACTGGCCCACACCAC+CGG + chr8_1:62769929-62769948 None:intergenic 60.0%
TGGTGTGGGCCAGTGTATGG+AGG - chr8_1:62769930-62769949 Msa1206040:CDS 60.0%
GCCAGTGTATGGAGGCCTTG+AGG - chr8_1:62769938-62769957 Msa1206040:CDS 60.0%
!! AGGTGGCGCTGACATGGCAT+GGG - chr8_1:62769958-62769977 Msa1206040:CDS 60.0%
AGGCGTATCATCGGAGCGGG+TGG + chr8_1:62769225-62769244 None:intergenic 65.0%
CACCACAGTCAGCGGTGGCT+CGG - chr8_1:62769268-62769287 Msa1206040:CDS 65.0%
CGGTGGAGGAGGAGGTTGCA+TGG - chr8_1:62769761-62769780 Msa1206040:intron 65.0%
CGGTGGTGTGGGCCAGTGTA+TGG - chr8_1:62769927-62769946 Msa1206040:CDS 65.0%
!! GCCTTGAGGTGGCGCTGACA+TGG - chr8_1:62769952-62769971 Msa1206040:CDS 65.0%
GCCATGTCAGCGCCACCTCA+AGG + chr8_1:62769956-62769975 None:intergenic 65.0%
!! GAGGTGGCGCTGACATGGCA+TGG - chr8_1:62769957-62769976 Msa1206040:CDS 65.0%
AGGCGTATCATCGGAGCGGG+TGG + chr8_1:62769225-62769244 None:intergenic 65.0%
CACCACAGTCAGCGGTGGCT+CGG - chr8_1:62769268-62769287 Msa1206040:CDS 65.0%
CGGTGGAGGAGGAGGTTGCA+TGG - chr8_1:62769761-62769780 Msa1206040:intron 65.0%
CGGTGGTGTGGGCCAGTGTA+TGG - chr8_1:62769927-62769946 Msa1206040:CDS 65.0%
!! GCCTTGAGGTGGCGCTGACA+TGG - chr8_1:62769952-62769971 Msa1206040:CDS 65.0%
GCCATGTCAGCGCCACCTCA+AGG + chr8_1:62769956-62769975 None:intergenic 65.0%
!! GAGGTGGCGCTGACATGGCA+TGG - chr8_1:62769957-62769976 Msa1206040:CDS 65.0%
AGCGGGTGGCCAACGCTTCG+AGG + chr8_1:62769211-62769230 None:intergenic 70.0%
! CACCGAGCCACCGCTGACTG+TGG + chr8_1:62769273-62769292 None:intergenic 70.0%
CAGCGTCACGGTGGAGGAGG+AGG - chr8_1:62769753-62769772 Msa1206040:intron 70.0%
AGCGGGTGGCCAACGCTTCG+AGG + chr8_1:62769211-62769230 None:intergenic 70.0%
! CACCGAGCCACCGCTGACTG+TGG + chr8_1:62769273-62769292 None:intergenic 70.0%
CAGCGTCACGGTGGAGGAGG+AGG - chr8_1:62769753-62769772 Msa1206040:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 62768450 62770292 62768450 ID=Msa1206040;Name=Msa1206040
chr8_1 mRNA 62768450 62770292 62768450 ID=Msa1206040-mRNA-1;Parent=Msa1206040;Name=Msa1206040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.33|1|0|0|3|334|457
chr8_1 exon 62768450 62769466 62768450 ID=Msa1206040-mRNA-1:exon:20334;Parent=Msa1206040-mRNA-1
chr8_1 exon 62769596 62769765 62769596 ID=Msa1206040-mRNA-1:exon:20333;Parent=Msa1206040-mRNA-1
chr8_1 exon 62769772 62770292 62769772 ID=Msa1206040-mRNA-1:exon:20332;Parent=Msa1206040-mRNA-1
chr8_1 CDS 62769772 62770292 62769772 ID=Msa1206040-mRNA-1:cds;Parent=Msa1206040-mRNA-1
chr8_1 CDS 62769596 62769765 62769596 ID=Msa1206040-mRNA-1:cds;Parent=Msa1206040-mRNA-1
chr8_1 CDS 62768784 62769466 62768784 ID=Msa1206040-mRNA-1:cds;Parent=Msa1206040-mRNA-1
chr8_1 three_prime_UTR 62768450 62768783 62768450 ID=Msa1206040-mRNA-1:three_prime_utr;Parent=Msa1206040-mRNA-1
Gene Sequence

>Msa1206040

CTTGTCAATTTTCAACAACAACAACAATATCAACCTGATCCTTCCATCAACTCCACCACCACCTTAACAACTTCTAGCAGCTCTAGATCCTCAAGACAAACAACATATCAATATTACAACCAACAAGAAGAAGACGAAGAATGCTTCAACAACTTTTATTACATGGATCATAATAACAACAATGATGAAGATTTATCCTCATCTTCTTCTAAACAACACTATTATACTTATCCTTATGCATCCACTACTACTATCACTACTCCAAACACAACAAACACTACTTATAATACTATCAACACCCCCACCACAACTGATAATTACTCTTTCTCACCCTCCCACGATTACTTCAACTTTGAATTCTCCGGCAACTCATGGTCACAAAACATCCTCCTTGAAACCGCACGTGCATTTTCCGACAACAACACAAACCGAATCCAACAACTCATGTGGATGCTAAACGAGCTTAGTTCCCCATACGGTGACACAGATCAAAAACTTTCTTCTTATTTTCTTCAAGCTTTTCGCATGAACGACGCGGGAGATAGAACCTACAAAACCTTAACATCCGCGTCGGAAAAAACATGTTCCTTCGATTCAACGAGGAAGATGTTGTTGAAGTTCCAAGAAGTTAGTCCATGGACAACGTTTGGACACGTGGCAGCCAACGGTGCTATCTTAGAAGCATTAGAAGTCAGCGGTGGCTCGGTGCAAAAAGTCATGAAGGAAATCGGTTCAAGGATGGAAAAATTTGCTAGGCTCATGGGAGTGCCGTTTAAATTCAAAATTATTTTCAGTGATTTAAGAGAGTTGAATTTGTGTGATTTAGATATTAAAGAAGATGAAGCTTTGGCTATAAATTGTGTAAACTCTTTACATTCGATATCCGGAGCCGGAAACCACCGTGATTTGTTTATATCTTTGCTTCGTGGGTTAGAACCTAGGGTTTTAACTATTGTTGAAGAGGAAGCTGATTTAGAAGTTTGTTTTGGTTCGGATTTCGTGGAAGGTTTTAAAGAGTGTTTAAGATGGTTTAGGGTTTATTTTGAAGCACTTGATGAAAGTTTTTCAAGAACAAGTAGTGAGAGGTTGATGCTAGAAAGAGAAGCTGGAAGAGGTATTGTTGATTTGGTTGCTTGTGACCCTTATGAGTCAATGGAGAGACGTGAAACAGCGTCACGGTGGAGGAGGAGGTTGCATGGTGGTGGGTTTAATACGGTGTCGTTTAGTGATGAAGTTTGTGATGATGTTAGGGCTTTGTTGAGAAGGTATAAAGAAGGGTGGTCGATGACACAGTGTTCCTCCGATGGTGATGCCGGAATATTCTTGTCGTGGAAGGATAAGCCGGTGGTGTGGGCCAGTGTATGGAGGCCTTGA

Protein sequence

>Msa1206040

LVNFQQQQQYQPDPSINSTTTLTTSSSSRSSRQTTYQYYNQQEEDEECFNNFYYMDHNNNNDEDLSSSSSKQHYYTYPYASTTTITTPNTTNTTYNTINTPTTTDNYSFSPSHDYFNFEFSGNSWSQNILLETARAFSDNNTNRIQQLMWMLNELSSPYGDTDQKLSSYFLQAFRMNDAGDRTYKTLTSASEKTCSFDSTRKMLLKFQEVSPWTTFGHVAANGAILEALEVSGGSVQKVMKEIGSRMEKFARLMGVPFKFKIIFSDLRELNLCDLDIKEDEALAINCVNSLHSISGAGNHRDLFISLLRGLEPRVLTIVEEEADLEVCFGSDFVEGFKECLRWFRVYFEALDESFSRTSSERLMLEREAGRGIVDLVACDPYESMERRETASRWRRRLHGGGFNTVSFSDEVCDDVRALLRRYKEGWSMTQCSSDGDAGIFLSWKDKPVVWASVWRP*