AlfalfaGEDB | Msa0184700

M. sativa cultivar zhongmu-4 / Msa0184700

KEGG: K20606
GO: GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0097435 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184700	AES62717.2	97.045	643	17	2	1	641	1	643	0.0	1278

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184700	sp\|Q40541\|NPK1_TOBAC	57.250	669	246	12	1	639	1	659	0.0	698

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184700	G7IE47	97.045	643	17	2	1	641	1	643	0.0	1278

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001800	Msa0184700	0.815755	7.855990e-52	-8.615850e-47
Msa0006840	Msa0184700	0.860336	2.217969e-63	-8.615850e-47
Msa0015570	Msa0184700	0.846154	2.596056e-59	-8.615850e-47
Msa0016530	Msa0184700	0.860516	1.955552e-63	-8.615850e-47
Msa0018920	Msa0184700	0.869565	2.815937e-66	-8.615850e-47
Msa0020540	Msa0184700	0.850383	1.759370e-60	-8.615850e-47
Msa0027800	Msa0184700	0.888146	7.648096e-73	-8.615850e-47
Msa0030070	Msa0184700	0.884022	2.734075e-71	-8.615850e-47
Msa0030690	Msa0184700	0.860178	2.476054e-63	-8.615850e-47
Msa0032970	Msa0184700	0.843802	1.119855e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184700	MtrunA17_Chr1g0205931	97.040	642	17	2	1	640	1	642	0.0	1274
Msa0184700	MtrunA17_Chr7g0272841	54.893	654	248	13	1	639	1	622	0.0	625
Msa0184700	MtrunA17_Chr3g0130151	45.016	311	161	5	55	364	244	545	2.21e-88	288
Msa0184700	MtrunA17_Chr8g0384301	46.154	299	147	5	54	351	298	583	5.32e-88	289
Msa0184700	MtrunA17_Chr1g0202831	47.099	293	142	5	54	343	410	692	1.19e-79	270
Msa0184700	MtrunA17_Chr8g0386981	47.955	269	131	4	51	318	404	664	5.68e-76	260
Msa0184700	MtrunA17_Chr4g0038501	47.018	285	134	9	54	336	19	288	2.41e-71	251
Msa0184700	MtrunA17_Chr4g0038091	46.316	285	136	9	54	336	19	288	8.65e-71	249
Msa0184700	MtrunA17_Chr5g0424501	41.745	321	164	9	8	318	138	445	1.60e-70	236
Msa0184700	MtrunA17_Chr5g0424581	44.643	280	137	9	43	318	113	378	4.14e-70	233

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0184700	AT3G06030.1	54.932	659	250	17	1	639	1	632	0.0	632
Msa0184700	AT1G09000.1	51.026	682	251	19	1	643	1	638	0.0	580
Msa0184700	AT1G54960.1	52.142	677	228	20	1	639	1	619	0.0	577
Msa0184700	AT1G54960.2	52.142	677	228	20	1	639	1	619	0.0	577
Msa0184700	AT1G09000.2	58.088	544	171	14	1	521	1	510	0.0	568
Msa0184700	AT1G53570.7	48.772	285	137	4	35	318	194	470	1.40e-90	291
Msa0184700	AT1G53570.6	48.772	285	137	4	35	318	194	470	1.71e-90	291
Msa0184700	AT1G53570.1	48.772	285	137	4	35	318	194	470	1.32e-89	291
Msa0184700	AT1G53570.4	48.772	285	137	4	35	318	194	470	1.50e-89	291
Msa0184700	AT1G53570.2	48.772	285	137	4	35	318	194	470	1.50e-89	291

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Find 193 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCACTCACCGACTCA+GGG	0.628025	1_4:-74273563	None:intergenic
AAACTCCAGCAGAATATTTA+AGG	0.202348	1_4:-74273493	None:intergenic
AAATATCTTACGAAACTTAG+TGG	0.451413	1_4:+74277104	Msa0184700:CDS
AAATGGAGCAAAATCTATGA+AGG	0.488456	1_4:+74274006	Msa0184700:CDS
AACATTCTAGTTGATAACAA+AGG	0.552076	1_4:+74273827	Msa0184700:CDS
AACTAGACGACGATTCTCAA+TGG	0.545671	1_4:+74277043	Msa0184700:CDS
AACTTGCCGAAGAGCTCGAG+CGG	0.616775	1_4:+74277347	Msa0184700:CDS
AAGAGGCTAAATGGAAAATA+GGG	0.431823	1_4:-74277446	None:intergenic
AAGATATAACCTTATCATCC+AGG	0.535396	1_4:-74276724	None:intergenic
AAGCGGCCATCGTCGGCGGA+GGG	0.536339	1_4:-74272646	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAATCTCTATCATATCAAG+TGG	-	chr1_4:74272441-74272460	None:intergenic	30.0%
AGTAAAGTGATTCAAAATGG+TGG	-	chr1_4:74272494-74272513	None:intergenic	30.0%
TACCTTTGTATTCTCTTTGA+AGG	-	chr1_4:74272955-74272974	None:intergenic	30.0%
CTAACACTCACAACAATATT+TGG	-	chr1_4:74273368-74273387	None:intergenic	30.0%
AGATTCCTTAAATATTCTGC+TGG	+	chr1_4:74273488-74273507	Msa0184700:CDS	30.0%
AAACTCCAGCAGAATATTTA+AGG	-	chr1_4:74273496-74273515	None:intergenic	30.0%
TCATCACTATTGGGAAAATT+CGG	+	chr1_4:74273534-74273553	Msa0184700:CDS	30.0%
GAATAATTCGGTTATTGTGA+AGG	-	chr1_4:74273704-74273723	None:intergenic	30.0%
ACAATAACCGAATTATTCAC+AGG	+	chr1_4:74273706-74273725	Msa0184700:CDS	30.0%
CAATAACCGAATTATTCACA+GGG	+	chr1_4:74273707-74273726	Msa0184700:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	74272409	74277622	74272409	ID=Msa0184700;Name=Msa0184700
chr1_4	mRNA	74272409	74277622	74272409	ID=Msa0184700-mRNA-1;Parent=Msa0184700;Name=Msa0184700-mRNA-1;_AED=0.20;_eAED=0.20;_QI=186\|1\|1\|1\|1\|1\|16\|226\|645
chr1_4	exon	74272409	74272849	74272409	ID=Msa0184700-mRNA-1:exon:25294;Parent=Msa0184700-mRNA-1
chr1_4	exon	74272930	74272971	74272930	ID=Msa0184700-mRNA-1:exon:25295;Parent=Msa0184700-mRNA-1
chr1_4	exon	74273311	74273376	74273311	ID=Msa0184700-mRNA-1:exon:25296;Parent=Msa0184700-mRNA-1
chr1_4	exon	74273462	74273572	74273462	ID=Msa0184700-mRNA-1:exon:25297;Parent=Msa0184700-mRNA-1
chr1_4	exon	74273657	74273737	74273657	ID=Msa0184700-mRNA-1:exon:25298;Parent=Msa0184700-mRNA-1
chr1_4	exon	74273821	74273898	74273821	ID=Msa0184700-mRNA-1:exon:25299;Parent=Msa0184700-mRNA-1
chr1_4	exon	74273998	74274080	74273998	ID=Msa0184700-mRNA-1:exon:25300;Parent=Msa0184700-mRNA-1
chr1_4	exon	74275224	74275308	74275224	ID=Msa0184700-mRNA-1:exon:25301;Parent=Msa0184700-mRNA-1
chr1_4	exon	74275452	74275552	74275452	ID=Msa0184700-mRNA-1:exon:25302;Parent=Msa0184700-mRNA-1
chr1_4	exon	74275720	74275759	74275720	ID=Msa0184700-mRNA-1:exon:25303;Parent=Msa0184700-mRNA-1
chr1_4	exon	74275894	74275953	74275894	ID=Msa0184700-mRNA-1:exon:25304;Parent=Msa0184700-mRNA-1
chr1_4	exon	74276050	74276093	74276050	ID=Msa0184700-mRNA-1:exon:25305;Parent=Msa0184700-mRNA-1
chr1_4	exon	74276180	74276411	74276180	ID=Msa0184700-mRNA-1:exon:25306;Parent=Msa0184700-mRNA-1
chr1_4	exon	74276500	74276736	74276500	ID=Msa0184700-mRNA-1:exon:25307;Parent=Msa0184700-mRNA-1
chr1_4	exon	74276891	74277225	74276891	ID=Msa0184700-mRNA-1:exon:25308;Parent=Msa0184700-mRNA-1
chr1_4	exon	74277309	74277622	74277309	ID=Msa0184700-mRNA-1:exon:25309;Parent=Msa0184700-mRNA-1
chr1_4	five_prime_UTR	74272409	74272594	74272409	ID=Msa0184700-mRNA-1:five_prime_utr;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74272595	74272849	74272595	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74272930	74272971	74272930	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74273311	74273376	74273311	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74273462	74273572	74273462	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74273657	74273737	74273657	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74273821	74273898	74273821	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74273998	74274080	74273998	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74275224	74275308	74275224	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74275452	74275552	74275452	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74275720	74275759	74275720	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74275894	74275953	74275894	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74276050	74276093	74276050	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74276180	74276411	74276180	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74276500	74276736	74276500	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74276891	74277225	74276891	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	CDS	74277309	74277396	74277309	ID=Msa0184700-mRNA-1:cds;Parent=Msa0184700-mRNA-1
chr1_4	three_prime_UTR	74277397	74277622	74277397	ID=Msa0184700-mRNA-1:three_prime_utr;Parent=Msa0184700-mRNA-1

Gene Sequence

>Msa0184700

ATGCAAGACTTCTTCGGCTCAATTCGCCGATCCATTGTCTTCTCAACCCCACCCTCCGCCGACGATGGCCGCTTCACCGGTTTTGCCAACAAGATCGGCTCCGCCATTCGCAAATCCAGAATCGGCAGCCTCAAATCTCCTCCTCCTCCTCCGCCAATTCGGTGGCGTAAGGGTGAGTTGATTGGTTCCGGTGCCTTCGGGAGGGTCTACATGGGCATGAACCTTGATTCCGGAGAGCTTATTGCTGTTAAACAGGTTTTGATTGAGCCTGGTATTGCCTTCAAAGAGAATACAAAGGCTAATATTCTGGAGCTCGAAGAAGAAGTGAAGCTTCTCAAGAATCTTAAGCATCCAAATATTGTTAGATACTTGGGAACTGCAAGAGAGGAAGATTCCTTAAATATTCTGCTGGAGTTTGTACCTGGTGGATCTATCTCATCACTATTGGGAAAATTCGGATCCTTCCCTGAGTCGGTTATCAGAACGTATACAAAACAGCTTTTAGATGGTCTTGAATACCTTCACAATAACCGAATTATTCACAGGGATATCAAGGGTGCAAACATTCTAGTTGATAACAAAGGGTGTATTAAACTCGCAGACTTTGGTGCATCCAGAAAAGTAGTGGAATTGGCTACCATAAATGGAGCAAAATCTATGAAGGGTACCCCACACTGGATGTCACCTGAAGTTATTTTACAGACAGGATATACAACCTCTGCTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCTACAGGAAAGCCTCCATGGAGTCAACAGTATCCCCAGGAGGTTTCGGCTCTTTTCTACATTGGAACAACTAGAGATCATCCACCCATACCTGAACATCTGTCTACTGAGGCAAAGGACTTTTTGCTCAAATGCTTTCACAAGGAACCAAATTTAAGACCTTCTGCATCAGACTTGTTACTGCATCCATTCATCACCTGCGAGTATCAGGAATCTCGTTCAATATCACGCAGTTCAATCAGGGACTCTTATCAGATGATACCAAATGGGCTGAACACTAGAAACTTTTTGGATTCTATCCAAGGATCAACTTGCACAGGCCTAAAGGATGTGTGTCAGACAGATAGTTTAAGGTTCTCAACTGTATATCATTCAAATTCCAATTCAAATCTTTTAAAAGCAGGTTCCTACCAGGGAGCAGACAACGATGATGATATGTGTCAAATAGACGATAAAGATGATTTTTTGGTTGATTCATCAGTAAAATCTAAATCCCTACTCGCTGCTGACGACATAAAGAGTTTCAATCCAATGTCCGAGCCTCTGGAGGATGACTGGCCTTGCAAGTTTGATGAAACTCTGAATTTAAAGAAAAGCAGACTGAACTTGTCCCCAGATCAAACTACTATGAAAACTATGAGTCCCGCACCATCTCCTAATGCAGAGAATGAGTTCTCATTTTCAAGTGAACCTCTTGCGGTTGAAGATGATGATGAAGTCACAGAATCCAAAATTAGAGCATTCCTGGATGATAAGGCCTTTGAATTGGAGAAGCTCCAAACACCTCTTTATGAAGAATTCTTTGGCAAATCAAATGCAACCATTCCTCCTGCGCCTTTTGCTGTTGCTCAAAGTAAAGTTATTTCTGATGTCTCAAATGTAACATCAAAAAGCAGGTCTCCAAGTCAAACTAGACGACGATTCTCAATGGCTAGCATTGCCAATGTAACAAGCCAGGAGAGTCAAAGAAAATATCTTACGAAACTTAGTGGTGCGACTTCTCATTGTAGACCTTTGCAGGAAGTTCAGCCATCCGAGCTCAATGAATCAAAGGAGACTCTTCATGATGCTGAGCTGGGATCAAATGTTAACTCAAGCTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAACTTGCCGAAGAGCTCGAGCGGACGCGAGGCAAATTTTTATCTTTTTGA

Protein sequence

>Msa0184700

MQDFFGSIRRSIVFSTPPSADDGRFTGFANKIGSAIRKSRIGSLKSPPPPPPIRWRKGELIGSGAFGRVYMGMNLDSGELIAVKQVLIEPGIAFKENTKANILELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIRTYTKQLLDGLEYLHNNRIIHRDIKGANILVDNKGCIKLADFGASRKVVELATINGAKSMKGTPHWMSPEVILQTGYTTSADIWSVACTVIEMATGKPPWSQQYPQEVSALFYIGTTRDHPPIPEHLSTEAKDFLLKCFHKEPNLRPSASDLLLHPFITCEYQESRSISRSSIRDSYQMIPNGLNTRNFLDSIQGSTCTGLKDVCQTDSLRFSTVYHSNSNSNLLKAGSYQGADNDDDMCQIDDKDDFLVDSSVKSKSLLAADDIKSFNPMSEPLEDDWPCKFDETLNLKKSRLNLSPDQTTMKTMSPAPSPNAENEFSFSSEPLAVEDDDEVTESKIRAFLDDKAFELEKLQTPLYEEFFGKSNATIPPAPFAVAQSKVISDVSNVTSKSRSPSQTRRRFSMASIANVTSQESQRKYLTKLSGATSHCRPLQEVQPSELNESKETLHDAELGSNVNSSFSERQRKWKEELAEELERTRGKFLSF*