Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435080 | KEH23428.1 | 81.395 | 43 | 4 | 1 | 18 | 60 | 1 | 39 | 4.87e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435080 | A0A072U2R1 | 81.395 | 43 | 4 | 1 | 18 | 60 | 1 | 39 | 2.33e-12 | 68.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056450 | Msa1435080 | 0.840505 | 8.353772e-58 | -8.615850e-47 |
| Msa0061250 | Msa1435080 | 0.800516 | 1.389339e-48 | -8.615850e-47 |
| Msa1401270 | Msa1435080 | 0.809468 | 1.864394e-50 | -8.615850e-47 |
| Msa1420250 | Msa1435080 | 0.810165 | 1.320332e-50 | -8.615850e-47 |
| Msa1435070 | Msa1435080 | 0.834558 | 2.795753e-56 | -8.615850e-47 |
| Msa1435080 | Msa1439700 | 0.833190 | 6.147758e-56 | -8.615850e-47 |
| Msa1435080 | Msa1439710 | 0.943904 | 5.170308e-103 | -8.615850e-47 |
| Msa1435080 | Msa1446780 | 0.827784 | 1.291936e-54 | -8.615850e-47 |
| Msa1435080 | Msa1464290 | 0.808147 | 3.572317e-50 | -8.615850e-47 |
| Msa0626280 | Msa1435080 | 0.820428 | 6.896635e-53 | -8.615850e-47 |
| Msa0641730 | Msa1435080 | 0.802373 | 5.786149e-49 | -8.615850e-47 |
| Msa0661320 | Msa1435080 | 0.839333 | 1.686872e-57 | -8.615850e-47 |
| Msa0664570 | Msa1435080 | 0.803721 | 3.045097e-49 | -8.615850e-47 |
| Msa0687450 | Msa1435080 | 0.819246 | 1.284677e-52 | -8.615850e-47 |
| Msa0689760 | Msa1435080 | 0.812610 | 3.888268e-51 | -8.615850e-47 |
| Msa0716860 | Msa1435080 | 0.818299 | 2.107315e-52 | -8.615850e-47 |
| Msa0751260 | Msa1435080 | 0.808730 | 2.682607e-50 | -8.615850e-47 |
| Msa0756530 | Msa1435080 | 0.841793 | 3.829357e-58 | -8.615850e-47 |
| Msa0757800 | Msa1435080 | 0.836330 | 9.971003e-57 | -8.615850e-47 |
| Msa0805430 | Msa1435080 | 0.807068 | 6.053642e-50 | -8.615850e-47 |
| Msa0828660 | Msa1435080 | 0.801440 | 8.995671e-49 | -8.615850e-47 |
| Msa0133820 | Msa1435080 | 0.800713 | 1.266481e-48 | -8.615850e-47 |
| Msa0160670 | Msa1435080 | 0.805828 | 1.105679e-49 | -8.615850e-47 |
| Msa0191890 | Msa1435080 | 0.809005 | 2.343302e-50 | -8.615850e-47 |
| Msa0230370 | Msa1435080 | 0.801564 | 8.484634e-49 | -8.615850e-47 |
| Msa1259640 | Msa1435080 | 0.800143 | 1.654755e-48 | -8.615850e-47 |
| Msa0382260 | Msa1435080 | 0.916621 | 1.428858e-85 | -8.615850e-47 |
| Msa0382270 | Msa1435080 | 0.827560 | 1.462842e-54 | -8.615850e-47 |
| Msa0387370 | Msa1435080 | 0.817217 | 3.697080e-52 | -8.615850e-47 |
| Msa0388220 | Msa1435080 | 0.801030 | 1.091503e-48 | -8.615850e-47 |
| Msa0394140 | Msa1435080 | 0.807284 | 5.447956e-50 | -8.615850e-47 |
| Msa0397460 | Msa1435080 | 0.806460 | 8.138235e-50 | -8.615850e-47 |
| Msa0468800 | Msa1435080 | 0.811613 | 6.412625e-51 | -8.615850e-47 |
| Msa1010070 | Msa1435080 | 0.813925 | 1.999355e-51 | -8.615850e-47 |
| Msa1038080 | Msa1435080 | 0.808228 | 3.433537e-50 | -8.615850e-47 |
| Msa0305330 | Msa1435080 | 0.812722 | 3.674463e-51 | -8.615850e-47 |
| Msa0342010 | Msa1435080 | 0.800572 | 1.353196e-48 | -8.615850e-47 |
| Msa0347990 | Msa1435080 | 0.801138 | 1.036999e-48 | -8.615850e-47 |
| Msa0358400 | Msa1435080 | 0.802566 | 5.280144e-49 | -8.615850e-47 |
| Msa1129690 | Msa1435080 | 0.805105 | 1.567260e-49 | -8.615850e-47 |
| Msa0510290 | Msa1435080 | 0.803751 | 3.002241e-49 | -8.615850e-47 |
| Msa0512870 | Msa1435080 | 0.808988 | 2.363051e-50 | -8.615850e-47 |
| Msa0520700 | Msa1435080 | 0.814480 | 1.508229e-51 | -8.615850e-47 |
| Msa0520710 | Msa1435080 | 0.820435 | 6.869103e-53 | -8.615850e-47 |
| Msa0576680 | Msa1435080 | 0.800740 | 1.250988e-48 | -8.615850e-47 |
| Msa0868160 | Msa1435080 | 0.837922 | 3.905639e-57 | -8.615850e-47 |
| Msa0896240 | Msa1435080 | 0.817474 | 3.235869e-52 | -8.615850e-47 |
| Msa0926670 | Msa1435080 | 0.810426 | 1.159501e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATGTCATGAAGCGATTT+TGG | 0.142839 | tig0027613:+23610 | None:intergenic |
| GGGCTCACTTTAGAAGTATT+TGG | 0.144391 | tig0027613:-21219 | Msa1435080:CDS |
| TTTAAAGAGGTTTCAATTAT+TGG | 0.165386 | tig0027613:-24142 | Msa1435080:CDS |
| CAGCCCGATCATGTTATATC+TGG | 0.249251 | tig0027613:-21240 | Msa1435080:CDS |
| GGCTCACTTTAGAAGTATTT+GGG | 0.284675 | tig0027613:-21218 | Msa1435080:CDS |
| CTCCGCATCTCTCGGGAATC+AGG | 0.292244 | tig0027613:-23017 | Msa1435080:intron |
| CTTTGTGGTCGTCTCCCTTC+AGG | 0.311368 | tig0027613:+24065 | None:intergenic |
| AGATTTCTCTGTCGAACATT+TGG | 0.320229 | tig0027613:-23045 | Msa1435080:CDS |
| GTTAAGGTTGTTGCTGGTTG+TGG | 0.329970 | tig0027613:-24097 | Msa1435080:CDS |
| GTGGTTGTTAAGGTTGTTGC+TGG | 0.335193 | tig0027613:-24103 | Msa1435080:CDS |
| TTCTGTGAATGTGGTTGTTA+AGG | 0.361374 | tig0027613:-24113 | Msa1435080:CDS |
| TTAAGGTTGTTGCTGGTTGT+GGG | 0.373170 | tig0027613:-24096 | Msa1435080:CDS |
| TTGTTGCTGGTTGTGGGAGG+TGG | 0.374353 | tig0027613:-24090 | Msa1435080:CDS |
| TCATCTTGCTCCCACCTTTG+TGG | 0.374883 | tig0027613:+24050 | None:intergenic |
| GTTCAGGGTTTATGAGGTTG+AGG | 0.421807 | tig0027613:+21155 | None:intergenic |
| TTCAGGGTTTATGAGGTTGA+GGG | 0.425564 | tig0027613:+21156 | None:intergenic |
| GATTTGGTGAAGAAGAAAGT+TGG | 0.428682 | tig0027613:-24239 | Msa1435080:CDS |
| GATCAGAACAATTACGATGA+AGG | 0.448729 | tig0027613:+23527 | None:intergenic |
| GGATCGACTCCGCATCTCTC+GGG | 0.452420 | tig0027613:-23024 | Msa1435080:CDS |
| TTGTGGGAGGTGGAGCCTGA+AGG | 0.457754 | tig0027613:-24080 | Msa1435080:CDS |
| GACCTGGTTCAGGGTTTATG+AGG | 0.457813 | tig0027613:+21149 | None:intergenic |
| TGGATCGACTCCGCATCTCT+CGG | 0.459058 | tig0027613:-23025 | Msa1435080:CDS |
| ATTTGGTGAAGAAGAAAGTT+GGG | 0.459706 | tig0027613:-24238 | Msa1435080:CDS |
| AATGAAGGTAAGCCATGCTT+TGG | 0.472531 | tig0027613:-24173 | Msa1435080:CDS |
| AGATATAACATGATCGGGCT+GGG | 0.479381 | tig0027613:+21242 | None:intergenic |
| AGCCCAGATATAACATGATC+GGG | 0.491687 | tig0027613:+21237 | None:intergenic |
| ATCAGAACAATTACGATGAA+GGG | 0.495680 | tig0027613:+23528 | None:intergenic |
| TTGCAGAGGAAGAGAAATGA+AGG | 0.495804 | tig0027613:-24188 | Msa1435080:intron |
| CAGATATAACATGATCGGGC+TGG | 0.497533 | tig0027613:+21241 | None:intergenic |
| TTTGGTTCACACATTTAAAG+AGG | 0.508262 | tig0027613:-24155 | Msa1435080:CDS |
| TGGTTGTGTTTCTGTGAATG+TGG | 0.521498 | tig0027613:-24122 | Msa1435080:CDS |
| AGGTTGTTGCTGGTTGTGGG+AGG | 0.530134 | tig0027613:-24093 | Msa1435080:CDS |
| TGTGGGAGGTGGAGCCTGAA+GGG | 0.539977 | tig0027613:-24079 | Msa1435080:CDS |
| AGCCCGATCATGTTATATCT+GGG | 0.545283 | tig0027613:-21239 | Msa1435080:CDS |
| GAGCCCAGATATAACATGAT+CGG | 0.548172 | tig0027613:+21236 | None:intergenic |
| TAAATGTGTGAACCAAAGCA+TGG | 0.589815 | tig0027613:+24161 | None:intergenic |
| AACCTGATTCCCGAGAGATG+CGG | 0.692711 | tig0027613:+23015 | None:intergenic |
| CTGAAGGGAGACGACCACAA+AGG | 0.700107 | tig0027613:-24064 | Msa1435080:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGAATAAAATTTTTGT+TGG | + | tig0027613:22621-22640 | None:intergenic | 10.0% |
| !!! | GTTATTTTAAATTTTACAAA+CGG | + | tig0027613:23400-23419 | None:intergenic | 10.0% |
| !! | ATATCTAAGTTAAATTTAAT+TGG | - | tig0027613:23797-23816 | Msa1435080:intron | 10.0% |
| !! | TTGTATATAATAATGATAAT+TGG | + | tig0027613:24052-24071 | None:intergenic | 10.0% |
| !!! | GAAAAAACTTTTTCTTTTTT+CGG | + | tig0027613:21707-21726 | None:intergenic | 15.0% |
| !!! | TAGAATTTGGATTTTTTTTT+TGG | - | tig0027613:21974-21993 | Msa1435080:intron | 15.0% |
| !!! | AGAATTTGGATTTTTTTTTT+GGG | - | tig0027613:21975-21994 | Msa1435080:intron | 15.0% |
| !!! | AATAAATAAATGGTGTTTTT+TGG | + | tig0027613:22788-22807 | None:intergenic | 15.0% |
| !!! | TGGTTCAATTTTTTTTTTTT+TGG | - | tig0027613:23631-23650 | Msa1435080:CDS | 15.0% |
| !!! | TTTTTTTTTTTTGGTTTAGT+TGG | - | tig0027613:23640-23659 | Msa1435080:CDS | 15.0% |
| !!! | TTTTTTTTTTTGGTTTAGTT+GGG | - | tig0027613:23641-23660 | Msa1435080:CDS | 15.0% |
| !! | ATATATATCTATATATATGC+AGG | - | tig0027613:24075-24094 | Msa1435080:CDS | 15.0% |
| !! | TTTAAAGAGGTTTCAATTAT+TGG | - | tig0027613:21295-21314 | Msa1435080:intron | 20.0% |
| !! | AACAATCTAACTATTTATCT+TGG | - | tig0027613:21477-21496 | Msa1435080:intron | 20.0% |
| !! | ACAATCTAACTATTTATCTT+GGG | - | tig0027613:21478-21497 | Msa1435080:intron | 20.0% |
| !! | ATTCATACATTGATATTTCT+AGG | - | tig0027613:22062-22081 | Msa1435080:intron | 20.0% |
| !!! | AGAATTGTGATATTTAAGTT+TGG | - | tig0027613:22308-22327 | Msa1435080:intron | 20.0% |
| !! | TCTAGAAAAGTTATATTCAA+TGG | - | tig0027613:22505-22524 | Msa1435080:intron | 20.0% |
| !!! | TTTGACTTTTTTTTGACAAA+AGG | + | tig0027613:22683-22702 | None:intergenic | 20.0% |
| !!! | GTTTACTTTCAGTTTTTTTT+TGG | + | tig0027613:22958-22977 | None:intergenic | 20.0% |
| !! | TCATATAAATTCCCATAAAA+TGG | - | tig0027613:23146-23165 | Msa1435080:intron | 20.0% |
| !! | CATTGTATAAAGTGAAATTA+AGG | - | tig0027613:23865-23884 | Msa1435080:intron | 20.0% |
| !! | TATACTTAATGATATATGTG+TGG | - | tig0027613:23968-23987 | Msa1435080:intron | 20.0% |
| !! | ATACTTAATGATATATGTGT+GGG | - | tig0027613:23969-23988 | Msa1435080:intron | 20.0% |
| ! | TTATTACTTGTGAGTAGATT+TGG | - | tig0027613:21182-21201 | Msa1435080:CDS | 25.0% |
| !!! | TTTTGAAGGCATATAAAAGT+GGG | + | tig0027613:21549-21568 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGGCATATAAAAG+TGG | + | tig0027613:21550-21569 | None:intergenic | 25.0% |
| !!! | AATGACAACGCAATTTTAAT+TGG | - | tig0027613:21587-21606 | Msa1435080:intron | 25.0% |
| !! | TTAATTCTTCTGATTTGATG+AGG | - | tig0027613:21998-22017 | Msa1435080:intron | 25.0% |
| !! | TCAAGAAATTGACATTTTCT+AGG | - | tig0027613:22123-22142 | Msa1435080:intron | 25.0% |
| ! | AATCAACTTAACCTAGAAAA+TGG | + | tig0027613:22137-22156 | None:intergenic | 25.0% |
| !! | TTTTTCTTAATGTGTTGAGT+TGG | + | tig0027613:22582-22601 | None:intergenic | 25.0% |
| !! | TTGGTAGTTAATATACTTTG+CGG | + | tig0027613:22769-22788 | None:intergenic | 25.0% |
| ! | TCTTCCATTATATACCAAAT+AGG | + | tig0027613:23276-23295 | None:intergenic | 25.0% |
| !! | ATTTGGTATATAATGGAAGA+CGG | - | tig0027613:23276-23295 | Msa1435080:intron | 25.0% |
| ! | AGTTCGAAATGTAAATTGTT+CGG | + | tig0027613:23432-23451 | None:intergenic | 25.0% |
| !! | TGTTTCGGAATTGTTATTAA+TGG | - | tig0027613:23611-23630 | Msa1435080:CDS | 25.0% |
| ! | CACATACATGATGTATAATA+GGG | + | tig0027613:23708-23727 | None:intergenic | 25.0% |
| ! | ACACATACATGATGTATAAT+AGG | + | tig0027613:23709-23728 | None:intergenic | 25.0% |
| ! | AGAGTGTGTGAATAAATTAA+AGG | + | tig0027613:23768-23787 | None:intergenic | 25.0% |
| ! | AATTTAATTGGATCAAAACG+AGG | - | tig0027613:23809-23828 | Msa1435080:intron | 25.0% |
| ! | TTCTAAATCAAATATTCACG+TGG | - | tig0027613:23896-23915 | Msa1435080:intron | 25.0% |
| ! | TTGGAAAATGTTGAATATAG+AGG | - | tig0027613:23925-23944 | Msa1435080:intron | 25.0% |
| ! | TACTTAATGATATATGTGTG+GGG | - | tig0027613:23970-23989 | Msa1435080:intron | 25.0% |
| ! | CCAAAATACTAAAATACATC+CGG | + | tig0027613:24141-24160 | None:intergenic | 25.0% |
| !!! | CGGATGTATTTTAGTATTTT+GGG | - | tig0027613:24139-24158 | Msa1435080:CDS | 25.0% |
| !! | ACGTTAAAGAGTAATTTTAG+AGG | - | tig0027613:24162-24181 | Msa1435080:CDS | 25.0% |
| ! | ATTTGGTGAAGAAGAAAGTT+GGG | - | tig0027613:21199-21218 | Msa1435080:CDS | 30.0% |
| ! | TTTGGTTCACACATTTAAAG+AGG | - | tig0027613:21282-21301 | Msa1435080:intron | 30.0% |
| ATCAGAACAATTACGATGAA+GGG | + | tig0027613:21912-21931 | None:intergenic | 30.0% | |
| !!! | TGATGTAATTGCCATTTTCT+AGG | - | tig0027613:22163-22182 | Msa1435080:intron | 30.0% |
| CTAATCAAATGCACTAACAT+GGG | + | tig0027613:22476-22495 | None:intergenic | 30.0% | |
| ACTAATCAAATGCACTAACA+TGG | + | tig0027613:22477-22496 | None:intergenic | 30.0% | |
| ! | GTTAGTGCATTTGATTAGTT+TGG | - | tig0027613:22478-22497 | Msa1435080:intron | 30.0% |
| !! | TTTTTCGATGATTTCCTTGT+TGG | + | tig0027613:22717-22736 | None:intergenic | 30.0% |
| TGGTAGTTAATATACTTTGC+GGG | + | tig0027613:22768-22787 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCAGATCTTTCCT+TGG | + | tig0027613:22849-22868 | None:intergenic | 30.0% |
| TGCTCAATTAGAACAATACA+TGG | + | tig0027613:23035-23054 | None:intergenic | 30.0% | |
| ! | ATAGCAACACTCCATTTTAT+GGG | + | tig0027613:23160-23179 | None:intergenic | 30.0% |
| ! | TATAGCAACACTCCATTTTA+TGG | + | tig0027613:23161-23180 | None:intergenic | 30.0% |
| ! | CATTTAAGAAAAGCGCATAA+TGG | + | tig0027613:23193-23212 | None:intergenic | 30.0% |
| ATGGCCTATTTGGTATATAA+TGG | - | tig0027613:23269-23288 | Msa1435080:intron | 30.0% | |
| TCTCATAATGTATTAGCAGT+GGG | - | tig0027613:23346-23365 | Msa1435080:intron | 30.0% | |
| GAAACAGTTCGGTAATAATT+TGG | + | tig0027613:23577-23596 | None:intergenic | 30.0% | |
| ATAACAATTCCGAAACAGTT+CGG | + | tig0027613:23608-23627 | None:intergenic | 30.0% | |
| TTGGGTTCAATTTATGAGTT+TGG | - | tig0027613:23659-23678 | Msa1435080:CDS | 30.0% | |
| !!! | ATGAGTTTGGTTCAGTTTTT+TGG | - | tig0027613:23672-23691 | Msa1435080:CDS | 30.0% |
| AATATTCACGTGGAAATGTT+TGG | - | tig0027613:23906-23925 | Msa1435080:intron | 30.0% | |
| ACTTAATGATATATGTGTGG+GGG | - | tig0027613:23971-23990 | Msa1435080:intron | 30.0% | |
| AAATACTAAAATACATCCGG+CGG | + | tig0027613:24138-24157 | None:intergenic | 30.0% | |
| !!! | CCGGATGTATTTTAGTATTT+TGG | - | tig0027613:24138-24157 | Msa1435080:CDS | 30.0% |
| !! | AAAGAGTAATTTTAGAGGAG+TGG | - | tig0027613:24167-24186 | Msa1435080:CDS | 30.0% |
| !! | GATTTGGTGAAGAAGAAAGT+TGG | - | tig0027613:21198-21217 | Msa1435080:CDS | 35.0% |
| TAAATGTGTGAACCAAAGCA+TGG | + | tig0027613:21279-21298 | None:intergenic | 35.0% | |
| TTCTGTGAATGTGGTTGTTA+AGG | - | tig0027613:21324-21343 | Msa1435080:intron | 35.0% | |
| GAAGCTATTGAGATCATATG+TGG | - | tig0027613:21426-21445 | Msa1435080:intron | 35.0% | |
| TATTTATCTTGGGTGACTCA+TGG | - | tig0027613:21488-21507 | Msa1435080:intron | 35.0% | |
| !! | TGTTAGGAACGGATTTTTGA+AGG | + | tig0027613:21563-21582 | None:intergenic | 35.0% |
| TGTCATTGTCATGTTAGGAA+CGG | + | tig0027613:21574-21593 | None:intergenic | 35.0% | |
| ! | CTATGTCATGAAGCGATTTT+GGG | + | tig0027613:21829-21848 | None:intergenic | 35.0% |
| GATCAGAACAATTACGATGA+AGG | + | tig0027613:21913-21932 | None:intergenic | 35.0% | |
| AGATTTCTCTGTCGAACATT+TGG | - | tig0027613:22392-22411 | Msa1435080:intron | 35.0% | |
| !! | ATGTGTTGAGTTGGAGAAAT+TGG | + | tig0027613:22573-22592 | None:intergenic | 35.0% |
| TTTGCGGGTATATGTATGAA+CGG | + | tig0027613:22753-22772 | None:intergenic | 35.0% | |
| ! | TTTCCTTGGTAGGTATTTTG+TGG | + | tig0027613:22835-22854 | None:intergenic | 35.0% |
| ! | TTTTCAGATCTTTCCTTGGT+AGG | + | tig0027613:22845-22864 | None:intergenic | 35.0% |
| TGAATTGAATGCAGTTCATG+TGG | + | tig0027613:22997-23016 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCAACAATG+TGG | - | tig0027613:23099-23118 | Msa1435080:intron | 35.0% | |
| GAAACTCACAAGAAGATTCA+AGG | + | tig0027613:23241-23260 | None:intergenic | 35.0% | |
| TTGTGAGTTTCACTATGCTA+TGG | - | tig0027613:23250-23269 | Msa1435080:intron | 35.0% | |
| TACAAAGGCAGTAGTGAAAA+AGG | + | tig0027613:23317-23336 | None:intergenic | 35.0% | |
| ATGAGAGACGTGAAATACAA+AGG | + | tig0027613:23332-23351 | None:intergenic | 35.0% | |
| CTCTCATAATGTATTAGCAG+TGG | - | tig0027613:23345-23364 | Msa1435080:intron | 35.0% | |
| !!! | TGGTTCGTTTTAGAACAGTT+CGG | + | tig0027613:23478-23497 | None:intergenic | 35.0% |
| ACGAACCAAACTGTTGTTAT+TGG | - | tig0027613:23490-23509 | Msa1435080:intron | 35.0% | |
| ! | AAATGTGCACTTTTGCTTGT+TGG | + | tig0027613:24011-24030 | None:intergenic | 35.0% |
| !! | CAAAAGTGCACATTTTCGTT+TGG | - | tig0027613:24016-24035 | Msa1435080:intron | 35.0% |
| AAATTGCAATTAATTGCCGC+CGG | - | tig0027613:24119-24138 | Msa1435080:CDS | 35.0% | |
| !! | GGCTCACTTTAGAAGTATTT+GGG | - | tig0027613:24219-24238 | Msa1435080:intron | 35.0% |
| !! | AAGTTGGGTGTTTTTGTGAG+AGG | - | tig0027613:21214-21233 | Msa1435080:CDS | 40.0% |
| ! | GGTGTGATTTTGAATTGCAG+AGG | - | tig0027613:21235-21254 | Msa1435080:CDS | 40.0% |
| TTGCAGAGGAAGAGAAATGA+AGG | - | tig0027613:21249-21268 | Msa1435080:CDS | 40.0% | |
| AATGAAGGTAAGCCATGCTT+TGG | - | tig0027613:21264-21283 | Msa1435080:intron | 40.0% | |
| ! | TGGTTGTGTTTCTGTGAATG+TGG | - | tig0027613:21315-21334 | Msa1435080:intron | 40.0% |
| ! | TTAAGGTTGTTGCTGGTTGT+GGG | - | tig0027613:21341-21360 | Msa1435080:intron | 40.0% |
| GGAGCAAGATGAGAAAAGTT+TGG | - | tig0027613:21398-21417 | Msa1435080:intron | 40.0% | |
| GTGGCATTTAACATGGGAAA+GGG | + | tig0027613:21527-21546 | None:intergenic | 40.0% | |
| AAGTGGGTGGCATTTAACAT+GGG | + | tig0027613:21533-21552 | None:intergenic | 40.0% | |
| AAAGTGGGTGGCATTTAACA+TGG | + | tig0027613:21534-21553 | None:intergenic | 40.0% | |
| ! | TGAAGGCATATAAAAGTGGG+TGG | + | tig0027613:21546-21565 | None:intergenic | 40.0% |
| TGCGTTGTCATTGTCATGTT+AGG | + | tig0027613:21579-21598 | None:intergenic | 40.0% | |
| ! | GCTATGTCATGAAGCGATTT+TGG | + | tig0027613:21830-21849 | None:intergenic | 40.0% |
| TTCTAACTCAGCGATTGGAA+CGG | + | tig0027613:21959-21978 | None:intergenic | 40.0% | |
| CCAAATTCTAACTCAGCGAT+TGG | + | tig0027613:21964-21983 | None:intergenic | 40.0% | |
| CCAATCGCTGAGTTAGAATT+TGG | - | tig0027613:21961-21980 | Msa1435080:intron | 40.0% | |
| !!! | GTGTTTTGACTTCTGTGATG+GGG | + | tig0027613:22661-22680 | None:intergenic | 40.0% |
| !!! | GGTGTTTTGACTTCTGTGAT+GGG | + | tig0027613:22662-22681 | None:intergenic | 40.0% |
| !!! | AGGTGTTTTGACTTCTGTGA+TGG | + | tig0027613:22663-22682 | None:intergenic | 40.0% |
| TCGATGATTTCCTTGTTGGA+GGG | + | tig0027613:22713-22732 | None:intergenic | 40.0% | |
| TTCGATGATTTCCTTGTTGG+AGG | + | tig0027613:22714-22733 | None:intergenic | 40.0% | |
| TTGCGGGTATATGTATGAAC+GGG | + | tig0027613:22752-22771 | None:intergenic | 40.0% | |
| CTTCCACAAAATACCTACCA+AGG | - | tig0027613:22829-22848 | Msa1435080:intron | 40.0% | |
| TGAATGCAGTTCATGTGGAT+CGG | + | tig0027613:22992-23011 | None:intergenic | 40.0% | |
| GCATTCAATTCACAAGTGCA+AGG | - | tig0027613:23005-23024 | Msa1435080:intron | 40.0% | |
| AAGAAGAAGAAGACGAGAGT+TGG | + | tig0027613:23088-23107 | None:intergenic | 40.0% | |
| TCACTATGCTATGGCCTATT+TGG | - | tig0027613:23259-23278 | Msa1435080:intron | 40.0% | |
| AAAGGCAGTAGTGAAAAAGG+TGG | + | tig0027613:23314-23333 | None:intergenic | 40.0% | |
| TAATGTATTAGCAGTGGGCA+TGG | - | tig0027613:23351-23370 | Msa1435080:intron | 40.0% | |
| CGGTACCAATAACAACAGTT+TGG | + | tig0027613:23498-23517 | None:intergenic | 40.0% | |
| ! | CGGTTTGATTCGAAACAGTT+CGG | + | tig0027613:23588-23607 | None:intergenic | 40.0% |
| CGAATCAAACCGAACTGTTT+CGG | - | tig0027613:23596-23615 | Msa1435080:CDS | 40.0% | |
| AGATATAACATGATCGGGCT+GGG | + | tig0027613:24198-24217 | None:intergenic | 40.0% | |
| AGCCCGATCATGTTATATCT+GGG | - | tig0027613:24198-24217 | Msa1435080:intron | 40.0% | |
| AGCCCAGATATAACATGATC+GGG | + | tig0027613:24203-24222 | None:intergenic | 40.0% | |
| GAGCCCAGATATAACATGAT+CGG | + | tig0027613:24204-24223 | None:intergenic | 40.0% | |
| !! | GGGCTCACTTTAGAAGTATT+TGG | - | tig0027613:24218-24237 | Msa1435080:intron | 40.0% |
| GTGGTTGTTAAGGTTGTTGC+TGG | - | tig0027613:21334-21353 | Msa1435080:intron | 45.0% | |
| ! | GTTAAGGTTGTTGCTGGTTG+TGG | - | tig0027613:21340-21359 | Msa1435080:intron | 45.0% |
| GGTGGCATTTAACATGGGAA+AGG | + | tig0027613:21528-21547 | None:intergenic | 45.0% | |
| AAAACACCTACCCTCCAACA+AGG | - | tig0027613:22700-22719 | Msa1435080:intron | 45.0% | |
| TGATTTCCTTGTTGGAGGGT+AGG | + | tig0027613:22709-22728 | None:intergenic | 45.0% | |
| TGCGGGTATATGTATGAACG+GGG | + | tig0027613:22751-22770 | None:intergenic | 45.0% | |
| ! | GAAGAAGACGAGAGTTGGTT+TGG | + | tig0027613:23083-23102 | None:intergenic | 45.0% |
| TGAAAAAGGTGGTCACGTGA+AGG | + | tig0027613:23303-23322 | None:intergenic | 45.0% | |
| CAGATATAACATGATCGGGC+TGG | + | tig0027613:24199-24218 | None:intergenic | 45.0% | |
| CAGCCCGATCATGTTATATC+TGG | - | tig0027613:24197-24216 | Msa1435080:intron | 45.0% | |
| !!! | ACTTTTTAAAAATAAATAAA+TGG | + | tig0027613:22798-22817 | None:intergenic | 5.0% |
| !!! | TTTTTTTATATTTTTTTCAA+CGG | + | tig0027613:23518-23537 | None:intergenic | 5.0% |
| TCATCTTGCTCCCACCTTTG+TGG | + | tig0027613:21390-21409 | None:intergenic | 50.0% | |
| AACCTGATTCCCGAGAGATG+CGG | + | tig0027613:22425-22444 | None:intergenic | 50.0% | |
| ! | AGGTTGTTGCTGGTTGTGGG+AGG | - | tig0027613:21344-21363 | Msa1435080:intron | 55.0% |
| ! | TTGTTGCTGGTTGTGGGAGG+TGG | - | tig0027613:21347-21366 | Msa1435080:intron | 55.0% |
| CTTTGTGGTCGTCTCCCTTC+AGG | + | tig0027613:21375-21394 | None:intergenic | 55.0% | |
| CTGAAGGGAGACGACCACAA+AGG | - | tig0027613:21373-21392 | Msa1435080:intron | 55.0% | |
| AAGGGAGACGACCACAAAGG+TGG | - | tig0027613:21376-21395 | Msa1435080:intron | 55.0% | |
| AGGGAGACGACCACAAAGGT+GGG | - | tig0027613:21377-21396 | Msa1435080:intron | 55.0% | |
| ! | TGGATCGACTCCGCATCTCT+CGG | - | tig0027613:22412-22431 | Msa1435080:intron | 55.0% |
| ! | CAGTGGGCATGGTTCTGTTC+AGG | - | tig0027613:23362-23381 | Msa1435080:intron | 55.0% |
| TTGTGGGAGGTGGAGCCTGA+AGG | - | tig0027613:21357-21376 | Msa1435080:intron | 60.0% | |
| TGTGGGAGGTGGAGCCTGAA+GGG | - | tig0027613:21358-21377 | Msa1435080:intron | 60.0% | |
| ! | GGATCGACTCCGCATCTCTC+GGG | - | tig0027613:22413-22432 | Msa1435080:intron | 60.0% |
| CTCCGCATCTCTCGGGAATC+AGG | - | tig0027613:22420-22439 | Msa1435080:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027613 | gene | 21164 | 24295 | 21164 | ID=Msa1435080;Name=Msa1435080 |
| tig0027613 | mRNA | 21164 | 24295 | 21164 | ID=Msa1435080-mRNA-1;Parent=Msa1435080;Name=Msa1435080-mRNA-1;_AED=0.41;_eAED=0.74;_QI=0|0|0.16|0.83|0.2|0.16|6|0|170 |
| tig0027613 | exon | 24292 | 24295 | 24292 | ID=Msa1435080-mRNA-1:exon:9508;Parent=Msa1435080-mRNA-1 |
| tig0027613 | exon | 24224 | 24260 | 24224 | ID=Msa1435080-mRNA-1:exon:9507;Parent=Msa1435080-mRNA-1 |
| tig0027613 | exon | 24065 | 24204 | 24065 | ID=Msa1435080-mRNA-1:exon:9506;Parent=Msa1435080-mRNA-1 |
| tig0027613 | exon | 23542 | 23694 | 23542 | ID=Msa1435080-mRNA-1:exon:9505;Parent=Msa1435080-mRNA-1 |
| tig0027613 | exon | 23018 | 23082 | 23018 | ID=Msa1435080-mRNA-1:exon:9504;Parent=Msa1435080-mRNA-1 |
| tig0027613 | exon | 21164 | 21277 | 21164 | ID=Msa1435080-mRNA-1:exon:9503;Parent=Msa1435080-mRNA-1 |
| tig0027613 | CDS | 24292 | 24295 | 24292 | ID=Msa1435080-mRNA-1:cds;Parent=Msa1435080-mRNA-1 |
| tig0027613 | CDS | 24224 | 24260 | 24224 | ID=Msa1435080-mRNA-1:cds;Parent=Msa1435080-mRNA-1 |
| tig0027613 | CDS | 24065 | 24204 | 24065 | ID=Msa1435080-mRNA-1:cds;Parent=Msa1435080-mRNA-1 |
| tig0027613 | CDS | 23542 | 23694 | 23542 | ID=Msa1435080-mRNA-1:cds;Parent=Msa1435080-mRNA-1 |
| tig0027613 | CDS | 23018 | 23082 | 23018 | ID=Msa1435080-mRNA-1:cds;Parent=Msa1435080-mRNA-1 |
| tig0027613 | CDS | 21164 | 21277 | 21164 | ID=Msa1435080-mRNA-1:cds;Parent=Msa1435080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
