AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0926670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0926670 MtrunA17_Chr6g0484401 75.912 137 8 1 1 112 1 137 2.32e-62 203
Msa0926670 MtrunA17_Chr8g0391121 38.849 139 58 2 1 112 1 139 2.98e-24 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0926670 AT3G18370.1 40.602 133 51 3 1 107 1 131 2.29e-22 90.9

Find 28 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTTGCACTTGCTGTTT+GGG 0.181803 6_2:-70659506 Msa0926670:CDS
ACAAATGTTTGCATCAATTA+AGG 0.222028 6_2:-70659953 Msa0926670:five_prime_UTR
TTCCTCTTGCACTTGCTGTT+TGG 0.250842 6_2:-70659507 Msa0926670:CDS
TCCTCACTCGTGTTAGTTGC+AGG 0.251501 6_2:+70660042 None:intergenic
GCACAAGCAATCAAAATAAC+TGG 0.349949 6_2:+70659565 None:intergenic
TGCTGTTTGGGCTACTATAC+AGG 0.355018 6_2:-70659494 Msa0926670:intron
AAGCTTGGGGTTAAAGTAGT+TGG 0.402811 6_2:+70658277 None:intergenic
ATAAACTGTTGACAGAAATC+TGG 0.405065 6_2:-70658301 Msa0926670:CDS
AGCTTGGGGTTAAAGTAGTT+GGG 0.420572 6_2:+70658278 None:intergenic
ACCAAGGTCAATTACTCAAA+AGG 0.423227 6_2:+70659785 None:intergenic
GATAACCTTGATGAAAGCTT+GGG 0.426526 6_2:+70658263 None:intergenic
AGGGTTGTTACTAGAAAACT+TGG 0.441259 6_2:+70659856 None:intergenic
AAGTTTCACCGCCTTTCCCC+TGG 0.455671 6_2:-70658224 Msa0926670:CDS
TGATAACCTTGATGAAAGCT+TGG 0.466050 6_2:+70658262 None:intergenic
CACCATTGGAGCACTGTGAA+TGG 0.486631 6_2:-70658328 Msa0926670:CDS
GCCCAAACAGCAAGTGCAAG+AGG 0.503028 6_2:+70659505 None:intergenic
TTCAATTGATAGTATTGAAG+AGG 0.504507 6_2:-70659647 Msa0926670:CDS
CATATAGCCCATCACACCAT+TGG 0.505510 6_2:-70658342 Msa0926670:intron
CCAAGGTCAATTACTCAAAA+GGG 0.513856 6_2:+70659786 None:intergenic
ACAACAGTTGAATTGAAAAG+TGG 0.540579 6_2:+70659998 None:intergenic
CAGTGCTCCAATGGTGTGAT+GGG 0.541796 6_2:+70658335 None:intergenic
ACAGTGCTCCAATGGTGTGA+TGG 0.543090 6_2:+70658334 None:intergenic
AGCCATTCACAGTGCTCCAA+TGG 0.546401 6_2:+70658326 None:intergenic
TTAACCCCAAGCTTTCATCA+AGG 0.550776 6_2:-70658268 Msa0926670:CDS
TAGTATTGAAGAGGTTGCTG+TGG 0.612031 6_2:-70659638 Msa0926670:CDS
ATAACCTTGATGAAAGCTTG+GGG 0.660235 6_2:+70658264 None:intergenic
ACCTGCAACTAACACGAGTG+AGG 0.665192 6_2:-70660043 Msa0926670:five_prime_UTR
AAGGTTATCAGCTATAGTTG+AGG 0.707519 6_2:-70658249 Msa0926670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAATTTTTTCTTGTTT+TGG + chr6_2:70658529-70658548 None:intergenic 10.0%
!! TTATCTAAATATGTTTAATT+TGG - chr6_2:70658853-70658872 Msa0926670:intron 10.0%
!!! AATTTAATTTTTTCTTGTTT+TGG + chr6_2:70658529-70658548 None:intergenic 10.0%
!! TTATCTAAATATGTTTAATT+TGG - chr6_2:70658853-70658872 Msa0926670:intron 10.0%
!!! ATGTTAATTTTCATTGAAAA+TGG + chr6_2:70658465-70658484 None:intergenic 15.0%
!!! TTTAGTTTTTTGATTGATTT+TGG - chr6_2:70658562-70658581 Msa0926670:intron 15.0%
!!! TTTTTGGATTTTTGTTAAAT+TGG - chr6_2:70658928-70658947 Msa0926670:intron 15.0%
!!! TTTTGGATTTTTGTTAAATT+GGG - chr6_2:70658929-70658948 Msa0926670:intron 15.0%
!!! TTTTACAATAATGTCAATAT+AGG + chr6_2:70659029-70659048 None:intergenic 15.0%
!! ATATATATCAAAATTCCAAA+GGG + chr6_2:70659607-70659626 None:intergenic 15.0%
!!! ATGTTAATTTTCATTGAAAA+TGG + chr6_2:70658465-70658484 None:intergenic 15.0%
!!! TTTAGTTTTTTGATTGATTT+TGG - chr6_2:70658562-70658581 Msa0926670:intron 15.0%
!!! TTTTTGGATTTTTGTTAAAT+TGG - chr6_2:70658928-70658947 Msa0926670:intron 15.0%
!!! TTTTGGATTTTTGTTAAATT+GGG - chr6_2:70658929-70658948 Msa0926670:intron 15.0%
!!! TTTTACAATAATGTCAATAT+AGG + chr6_2:70659029-70659048 None:intergenic 15.0%
!! ATATATATCAAAATTCCAAA+GGG + chr6_2:70659607-70659626 None:intergenic 15.0%
!!! ATTTTCATTGAAAATGGTTT+TGG + chr6_2:70658459-70658478 None:intergenic 20.0%
!! AAAAATGAGTAGAAAGAAAA+GGG - chr6_2:70658599-70658618 Msa0926670:intron 20.0%
!! AAAATAACTGGAATGAAAAA+TGG + chr6_2:70658699-70658718 None:intergenic 20.0%
!! AATGATTGATTAATAGAGTA+AGG + chr6_2:70658821-70658840 None:intergenic 20.0%
!!! TAAAATGCATTCATTGTTTT+TGG - chr6_2:70658912-70658931 Msa0926670:intron 20.0%
!!! TTTGGATTTTTGTTAAATTG+GGG - chr6_2:70658930-70658949 Msa0926670:intron 20.0%
!!! CATGAAATTTATTTTCTTTG+AGG - chr6_2:70658959-70658978 Msa0926670:intron 20.0%
!! TATGCTAACAAATTATACAA+TGG + chr6_2:70659420-70659439 None:intergenic 20.0%
!! CATATATATCAAAATTCCAA+AGG + chr6_2:70659608-70659627 None:intergenic 20.0%
!!! TACATTGAATTTGAAACTAA+CGG + chr6_2:70659633-70659652 None:intergenic 20.0%
!!! TGTTGTTTAATTTTCAGTAT+GGG - chr6_2:70659767-70659786 Msa0926670:five_prime_UTR 20.0%
!!! ATTTTCATTGAAAATGGTTT+TGG + chr6_2:70658459-70658478 None:intergenic 20.0%
!! AAAAATGAGTAGAAAGAAAA+GGG - chr6_2:70658599-70658618 Msa0926670:intron 20.0%
!! AAAATAACTGGAATGAAAAA+TGG + chr6_2:70658699-70658718 None:intergenic 20.0%
!! AATGATTGATTAATAGAGTA+AGG + chr6_2:70658821-70658840 None:intergenic 20.0%
!!! TAAAATGCATTCATTGTTTT+TGG - chr6_2:70658912-70658931 Msa0926670:intron 20.0%
!!! TTTGGATTTTTGTTAAATTG+GGG - chr6_2:70658930-70658949 Msa0926670:intron 20.0%
!!! CATGAAATTTATTTTCTTTG+AGG - chr6_2:70658959-70658978 Msa0926670:intron 20.0%
!! TATGCTAACAAATTATACAA+TGG + chr6_2:70659420-70659439 None:intergenic 20.0%
!! CATATATATCAAAATTCCAA+AGG + chr6_2:70659608-70659627 None:intergenic 20.0%
!!! TACATTGAATTTGAAACTAA+CGG + chr6_2:70659633-70659652 None:intergenic 20.0%
!!! TGTTGTTTAATTTTCAGTAT+GGG - chr6_2:70659767-70659786 Msa0926670:five_prime_UTR 20.0%
! ACAAATGTTTGCATCAATTA+AGG - chr6_2:70658320-70658339 Msa0926670:CDS 25.0%
! CAAAAATGAGTAGAAAGAAA+AGG - chr6_2:70658598-70658617 Msa0926670:intron 25.0%
!! TTCAATTGATAGTATTGAAG+AGG - chr6_2:70658626-70658645 Msa0926670:intron 25.0%
!! GACGAATCTAATTAACATTT+TGG + chr6_2:70659066-70659085 None:intergenic 25.0%
! TTCAATGTAATTATACGTGT+CGG + chr6_2:70659165-70659184 None:intergenic 25.0%
!! TTGATAACATATTTAGACAG+CGG - chr6_2:70659319-70659338 Msa0926670:intron 25.0%
! TAAATAATAGTTCCAAAACC+AGG + chr6_2:70659489-70659508 None:intergenic 25.0%
! TGGAACTATTATTTACCAAT+TGG - chr6_2:70659494-70659513 Msa0926670:intron 25.0%
!! TAAACACTTATTTCTCCAAT+TGG + chr6_2:70659512-70659531 None:intergenic 25.0%
!!! CTGTTGTTTAATTTTCAGTA+TGG - chr6_2:70659766-70659785 Msa0926670:five_prime_UTR 25.0%
! ACAAATGTTTGCATCAATTA+AGG - chr6_2:70658320-70658339 Msa0926670:CDS 25.0%
! CAAAAATGAGTAGAAAGAAA+AGG - chr6_2:70658598-70658617 Msa0926670:intron 25.0%
!! TTCAATTGATAGTATTGAAG+AGG - chr6_2:70658626-70658645 Msa0926670:intron 25.0%
!! GACGAATCTAATTAACATTT+TGG + chr6_2:70659066-70659085 None:intergenic 25.0%
! TTCAATGTAATTATACGTGT+CGG + chr6_2:70659165-70659184 None:intergenic 25.0%
!! TTGATAACATATTTAGACAG+CGG - chr6_2:70659319-70659338 Msa0926670:intron 25.0%
! TAAATAATAGTTCCAAAACC+AGG + chr6_2:70659489-70659508 None:intergenic 25.0%
! TGGAACTATTATTTACCAAT+TGG - chr6_2:70659494-70659513 Msa0926670:intron 25.0%
!! TAAACACTTATTTCTCCAAT+TGG + chr6_2:70659512-70659531 None:intergenic 25.0%
!!! CTGTTGTTTAATTTTCAGTA+TGG - chr6_2:70659766-70659785 Msa0926670:five_prime_UTR 25.0%
ACAACAGTTGAATTGAAAAG+TGG + chr6_2:70658278-70658297 None:intergenic 30.0%
! TGGAGTTGACAAATTTTGAA+GGG + chr6_2:70658439-70658458 None:intergenic 30.0%
! TTGGAGTTGACAAATTTTGA+AGG + chr6_2:70658440-70658459 None:intergenic 30.0%
! TTTCTTCAACTATGTTTTGC+AGG - chr6_2:70658659-70658678 Msa0926670:intron 30.0%
GGAATGAAAAATGGAATCTT+TGG + chr6_2:70658690-70658709 None:intergenic 30.0%
! GGTCTTTTCTTTTTCTACTT+GGG - chr6_2:70658743-70658762 Msa0926670:intron 30.0%
! TAATTTGGTGAGAATTGTCT+TGG - chr6_2:70658868-70658887 Msa0926670:intron 30.0%
! CTTTGAGGAAATACTCAATT+TGG - chr6_2:70658974-70658993 Msa0926670:intron 30.0%
TGTTAATTAGATTCGTCGAT+CGG - chr6_2:70659069-70659088 Msa0926670:intron 30.0%
TAGTATATGATGCACGTATA+CGG + chr6_2:70659236-70659255 None:intergenic 30.0%
ATATACTACTGCCATTAAGT+TGG - chr6_2:70659248-70659267 Msa0926670:intron 30.0%
TCTCATCATTACCAACTTAA+TGG + chr6_2:70659262-70659281 None:intergenic 30.0%
ATGTTATCAAATACATTCCC+TGG + chr6_2:70659309-70659328 None:intergenic 30.0%
TGATAACATATTTAGACAGC+GGG - chr6_2:70659320-70659339 Msa0926670:intron 30.0%
GGAAAAGTAAAAATCCAATC+TGG + chr6_2:70659399-70659418 None:intergenic 30.0%
GATAAAGAACAACATCTACA+AGG + chr6_2:70659455-70659474 None:intergenic 30.0%
CTTTATCAATTATAGTGACC+TGG - chr6_2:70659468-70659487 Msa0926670:intron 30.0%
! ATTTCAAATCAAAGGTGTGT+CGG + chr6_2:70659711-70659730 None:intergenic 30.0%
GCGAATCATATTGAATAACT+CGG - chr6_2:70659837-70659856 Msa0926670:five_prime_UTR 30.0%
AAGAACATTGGCAATTTCAT+AGG + chr6_2:70659883-70659902 None:intergenic 30.0%
CAACTTCATGTAAAGAACAT+TGG + chr6_2:70659895-70659914 None:intergenic 30.0%
ATAAACTGTTGACAGAAATC+TGG - chr6_2:70659972-70659991 Msa0926670:five_prime_UTR 30.0%
ACAACAGTTGAATTGAAAAG+TGG + chr6_2:70658278-70658297 None:intergenic 30.0%
! TGGAGTTGACAAATTTTGAA+GGG + chr6_2:70658439-70658458 None:intergenic 30.0%
! TTGGAGTTGACAAATTTTGA+AGG + chr6_2:70658440-70658459 None:intergenic 30.0%
! TTTCTTCAACTATGTTTTGC+AGG - chr6_2:70658659-70658678 Msa0926670:intron 30.0%
GGAATGAAAAATGGAATCTT+TGG + chr6_2:70658690-70658709 None:intergenic 30.0%
! GGTCTTTTCTTTTTCTACTT+GGG - chr6_2:70658743-70658762 Msa0926670:intron 30.0%
! TAATTTGGTGAGAATTGTCT+TGG - chr6_2:70658868-70658887 Msa0926670:intron 30.0%
! CTTTGAGGAAATACTCAATT+TGG - chr6_2:70658974-70658993 Msa0926670:intron 30.0%
TGTTAATTAGATTCGTCGAT+CGG - chr6_2:70659069-70659088 Msa0926670:intron 30.0%
TAGTATATGATGCACGTATA+CGG + chr6_2:70659236-70659255 None:intergenic 30.0%
ATATACTACTGCCATTAAGT+TGG - chr6_2:70659248-70659267 Msa0926670:intron 30.0%
TCTCATCATTACCAACTTAA+TGG + chr6_2:70659262-70659281 None:intergenic 30.0%
ATGTTATCAAATACATTCCC+TGG + chr6_2:70659309-70659328 None:intergenic 30.0%
TGATAACATATTTAGACAGC+GGG - chr6_2:70659320-70659339 Msa0926670:intron 30.0%
GGAAAAGTAAAAATCCAATC+TGG + chr6_2:70659399-70659418 None:intergenic 30.0%
GATAAAGAACAACATCTACA+AGG + chr6_2:70659455-70659474 None:intergenic 30.0%
CTTTATCAATTATAGTGACC+TGG - chr6_2:70659468-70659487 Msa0926670:intron 30.0%
! ATTTCAAATCAAAGGTGTGT+CGG + chr6_2:70659711-70659730 None:intergenic 30.0%
GCGAATCATATTGAATAACT+CGG - chr6_2:70659837-70659856 Msa0926670:five_prime_UTR 30.0%
AAGAACATTGGCAATTTCAT+AGG + chr6_2:70659883-70659902 None:intergenic 30.0%
CAACTTCATGTAAAGAACAT+TGG + chr6_2:70659895-70659914 None:intergenic 30.0%
ATAAACTGTTGACAGAAATC+TGG - chr6_2:70659972-70659991 Msa0926670:five_prime_UTR 30.0%
AGGGTTGTTACTAGAAAACT+TGG + chr6_2:70658420-70658439 None:intergenic 35.0%
CCAAGGTCAATTACTCAAAA+GGG + chr6_2:70658490-70658509 None:intergenic 35.0%
ACCAAGGTCAATTACTCAAA+AGG + chr6_2:70658491-70658510 None:intergenic 35.0%
!!! GAAGTTTTGATTGAAGACCA+AGG + chr6_2:70658507-70658526 None:intergenic 35.0%
GCACAAGCAATCAAAATAAC+TGG + chr6_2:70658711-70658730 None:intergenic 35.0%
! TTGCTTGTGCTGTTGAAAAA+TGG - chr6_2:70658721-70658740 Msa0926670:intron 35.0%
! TGCTTGTGCTGTTGAAAAAT+GGG - chr6_2:70658722-70658741 Msa0926670:intron 35.0%
! GGGTCTTTTCTTTTTCTACT+TGG - chr6_2:70658742-70658761 Msa0926670:intron 35.0%
AATTTGGTCACTGAAGTTGT+AGG - chr6_2:70658990-70659009 Msa0926670:intron 35.0%
! TGAAACTATTGACTAATGCC+AGG - chr6_2:70659288-70659307 Msa0926670:intron 35.0%
! GAAACTATTGACTAATGCCA+GGG - chr6_2:70659289-70659308 Msa0926670:intron 35.0%
!! ACATTTTGACCATGTTGATC+TGG - chr6_2:70659356-70659375 Msa0926670:intron 35.0%
! CAATTATAGTGACCTGGTTT+TGG - chr6_2:70659474-70659493 Msa0926670:intron 35.0%
ACGTGAAAAAACTAAGACAG+TGG - chr6_2:70659537-70659556 Msa0926670:CDS 35.0%
! CAAAGGGTGTACATAAGAAT+AGG + chr6_2:70659591-70659610 None:intergenic 35.0%
CTATTCTTATGTACACCCTT+TGG - chr6_2:70659589-70659608 Msa0926670:CDS 35.0%
!! ACACCTTTGATTTGAAATGC+TGG - chr6_2:70659713-70659732 Msa0926670:five_prime_UTR 35.0%
AATGCTGGTGCTTATTTACA+AGG - chr6_2:70659728-70659747 Msa0926670:five_prime_UTR 35.0%
TAGAGGACTTGGATAAGAAA+TGG - chr6_2:70659812-70659831 Msa0926670:five_prime_UTR 35.0%
GGCAATTTCATAGGAAAAAC+AGG + chr6_2:70659874-70659893 None:intergenic 35.0%
ATAACCTTGATGAAAGCTTG+GGG + chr6_2:70660012-70660031 None:intergenic 35.0%
GATAACCTTGATGAAAGCTT+GGG + chr6_2:70660013-70660032 None:intergenic 35.0%
TGATAACCTTGATGAAAGCT+TGG + chr6_2:70660014-70660033 None:intergenic 35.0%
AAGGTTATCAGCTATAGTTG+AGG - chr6_2:70660024-70660043 Msa0926670:five_prime_UTR 35.0%
CTACAACAAGTAAAAACCAG+GGG + chr6_2:70660068-70660087 None:intergenic 35.0%
AGGGTTGTTACTAGAAAACT+TGG + chr6_2:70658420-70658439 None:intergenic 35.0%
CCAAGGTCAATTACTCAAAA+GGG + chr6_2:70658490-70658509 None:intergenic 35.0%
ACCAAGGTCAATTACTCAAA+AGG + chr6_2:70658491-70658510 None:intergenic 35.0%
!!! GAAGTTTTGATTGAAGACCA+AGG + chr6_2:70658507-70658526 None:intergenic 35.0%
GCACAAGCAATCAAAATAAC+TGG + chr6_2:70658711-70658730 None:intergenic 35.0%
! TTGCTTGTGCTGTTGAAAAA+TGG - chr6_2:70658721-70658740 Msa0926670:intron 35.0%
! TGCTTGTGCTGTTGAAAAAT+GGG - chr6_2:70658722-70658741 Msa0926670:intron 35.0%
! GGGTCTTTTCTTTTTCTACT+TGG - chr6_2:70658742-70658761 Msa0926670:intron 35.0%
AATTTGGTCACTGAAGTTGT+AGG - chr6_2:70658990-70659009 Msa0926670:intron 35.0%
! TGAAACTATTGACTAATGCC+AGG - chr6_2:70659288-70659307 Msa0926670:intron 35.0%
! GAAACTATTGACTAATGCCA+GGG - chr6_2:70659289-70659308 Msa0926670:intron 35.0%
!! ACATTTTGACCATGTTGATC+TGG - chr6_2:70659356-70659375 Msa0926670:intron 35.0%
! CAATTATAGTGACCTGGTTT+TGG - chr6_2:70659474-70659493 Msa0926670:intron 35.0%
ACGTGAAAAAACTAAGACAG+TGG - chr6_2:70659537-70659556 Msa0926670:CDS 35.0%
! CAAAGGGTGTACATAAGAAT+AGG + chr6_2:70659591-70659610 None:intergenic 35.0%
CTATTCTTATGTACACCCTT+TGG - chr6_2:70659589-70659608 Msa0926670:CDS 35.0%
!! ACACCTTTGATTTGAAATGC+TGG - chr6_2:70659713-70659732 Msa0926670:five_prime_UTR 35.0%
AATGCTGGTGCTTATTTACA+AGG - chr6_2:70659728-70659747 Msa0926670:five_prime_UTR 35.0%
TAGAGGACTTGGATAAGAAA+TGG - chr6_2:70659812-70659831 Msa0926670:five_prime_UTR 35.0%
GGCAATTTCATAGGAAAAAC+AGG + chr6_2:70659874-70659893 None:intergenic 35.0%
ATAACCTTGATGAAAGCTTG+GGG + chr6_2:70660012-70660031 None:intergenic 35.0%
GATAACCTTGATGAAAGCTT+GGG + chr6_2:70660013-70660032 None:intergenic 35.0%
TGATAACCTTGATGAAAGCT+TGG + chr6_2:70660014-70660033 None:intergenic 35.0%
AAGGTTATCAGCTATAGTTG+AGG - chr6_2:70660024-70660043 Msa0926670:five_prime_UTR 35.0%
CTACAACAAGTAAAAACCAG+GGG + chr6_2:70660068-70660087 None:intergenic 35.0%
!! CCCTTTTGAGTAATTGACCT+TGG - chr6_2:70658487-70658506 Msa0926670:intron 40.0%
! TAGTATTGAAGAGGTTGCTG+TGG - chr6_2:70658635-70658654 Msa0926670:intron 40.0%
TTGGTGAGAATTGTCTTGGT+TGG - chr6_2:70658872-70658891 Msa0926670:intron 40.0%
!! TAGCACTGATCTATGAAGCA+AGG - chr6_2:70659107-70659126 Msa0926670:intron 40.0%
TATGAAGCAAGGACACTCTT+CGG - chr6_2:70659118-70659137 Msa0926670:intron 40.0%
!! TTATACGTGTCGGTGTTGTT+CGG + chr6_2:70659155-70659174 None:intergenic 40.0%
ATTGCAAGACCAGATCAACA+TGG + chr6_2:70659368-70659387 None:intergenic 40.0%
!! CTAAGACAGTGGTTGTTTTG+TGG - chr6_2:70659548-70659567 Msa0926670:CDS 40.0%
GCACCAGCATTTCAAATCAA+AGG + chr6_2:70659719-70659738 None:intergenic 40.0%
CAAACTACTTGTAGAGGACT+TGG - chr6_2:70659801-70659820 Msa0926670:five_prime_UTR 40.0%
AGCTTGGGGTTAAAGTAGTT+GGG + chr6_2:70659998-70660017 None:intergenic 40.0%
AAGCTTGGGGTTAAAGTAGT+TGG + chr6_2:70659999-70660018 None:intergenic 40.0%
TTAACCCCAAGCTTTCATCA+AGG - chr6_2:70660005-70660024 Msa0926670:five_prime_UTR 40.0%
ACAAGTAAAAACCAGGGGAA+AGG + chr6_2:70660063-70660082 None:intergenic 40.0%
!! CCCTTTTGAGTAATTGACCT+TGG - chr6_2:70658487-70658506 Msa0926670:intron 40.0%
! TAGTATTGAAGAGGTTGCTG+TGG - chr6_2:70658635-70658654 Msa0926670:intron 40.0%
TTGGTGAGAATTGTCTTGGT+TGG - chr6_2:70658872-70658891 Msa0926670:intron 40.0%
!! TAGCACTGATCTATGAAGCA+AGG - chr6_2:70659107-70659126 Msa0926670:intron 40.0%
TATGAAGCAAGGACACTCTT+CGG - chr6_2:70659118-70659137 Msa0926670:intron 40.0%
!! TTATACGTGTCGGTGTTGTT+CGG + chr6_2:70659155-70659174 None:intergenic 40.0%
ATTGCAAGACCAGATCAACA+TGG + chr6_2:70659368-70659387 None:intergenic 40.0%
!! CTAAGACAGTGGTTGTTTTG+TGG - chr6_2:70659548-70659567 Msa0926670:CDS 40.0%
GCACCAGCATTTCAAATCAA+AGG + chr6_2:70659719-70659738 None:intergenic 40.0%
CAAACTACTTGTAGAGGACT+TGG - chr6_2:70659801-70659820 Msa0926670:five_prime_UTR 40.0%
AGCTTGGGGTTAAAGTAGTT+GGG + chr6_2:70659998-70660017 None:intergenic 40.0%
AAGCTTGGGGTTAAAGTAGT+TGG + chr6_2:70659999-70660018 None:intergenic 40.0%
TTAACCCCAAGCTTTCATCA+AGG - chr6_2:70660005-70660024 Msa0926670:five_prime_UTR 40.0%
ACAAGTAAAAACCAGGGGAA+AGG + chr6_2:70660063-70660082 None:intergenic 40.0%
!! TTCCTCTTGCACTTGCTGTT+TGG - chr6_2:70658766-70658785 Msa0926670:intron 45.0%
!! TCCTCTTGCACTTGCTGTTT+GGG - chr6_2:70658767-70658786 Msa0926670:intron 45.0%
! TGCTGTTTGGGCTACTATAC+AGG - chr6_2:70658779-70658798 Msa0926670:intron 45.0%
CGTCGATCGGTTGAAATTGT+AGG - chr6_2:70659082-70659101 Msa0926670:intron 45.0%
ATGATGCACGTATACGGACA+CGG + chr6_2:70659230-70659249 None:intergenic 45.0%
TGCAATTTCAGCGACCAGAT+TGG - chr6_2:70659382-70659401 Msa0926670:intron 45.0%
! CCTCTACAAGTAGTTTGCGT+TGG + chr6_2:70659798-70659817 None:intergenic 45.0%
CCAACGCAAACTACTTGTAG+AGG - chr6_2:70659795-70659814 Msa0926670:five_prime_UTR 45.0%
CATATAGCCCATCACACCAT+TGG - chr6_2:70659931-70659950 Msa0926670:five_prime_UTR 45.0%
AGTAAAAACCAGGGGAAAGG+CGG + chr6_2:70660060-70660079 None:intergenic 45.0%
!! TTCCTCTTGCACTTGCTGTT+TGG - chr6_2:70658766-70658785 Msa0926670:intron 45.0%
!! TCCTCTTGCACTTGCTGTTT+GGG - chr6_2:70658767-70658786 Msa0926670:intron 45.0%
! TGCTGTTTGGGCTACTATAC+AGG - chr6_2:70658779-70658798 Msa0926670:intron 45.0%
CGTCGATCGGTTGAAATTGT+AGG - chr6_2:70659082-70659101 Msa0926670:intron 45.0%
ATGATGCACGTATACGGACA+CGG + chr6_2:70659230-70659249 None:intergenic 45.0%
TGCAATTTCAGCGACCAGAT+TGG - chr6_2:70659382-70659401 Msa0926670:intron 45.0%
! CCTCTACAAGTAGTTTGCGT+TGG + chr6_2:70659798-70659817 None:intergenic 45.0%
CCAACGCAAACTACTTGTAG+AGG - chr6_2:70659795-70659814 Msa0926670:five_prime_UTR 45.0%
CATATAGCCCATCACACCAT+TGG - chr6_2:70659931-70659950 Msa0926670:five_prime_UTR 45.0%
AGTAAAAACCAGGGGAAAGG+CGG + chr6_2:70660060-70660079 None:intergenic 45.0%
ACCTGCAACTAACACGAGTG+AGG - chr6_2:70658230-70658249 Msa0926670:CDS 50.0%
TCCTCACTCGTGTTAGTTGC+AGG + chr6_2:70658234-70658253 None:intergenic 50.0%
ATCAGTGTTCCTGTCGTGTC+CGG - chr6_2:70659201-70659220 Msa0926670:intron 50.0%
CAGTGCTCCAATGGTGTGAT+GGG + chr6_2:70659941-70659960 None:intergenic 50.0%
ACAGTGCTCCAATGGTGTGA+TGG + chr6_2:70659942-70659961 None:intergenic 50.0%
!! CACCATTGGAGCACTGTGAA+TGG - chr6_2:70659945-70659964 Msa0926670:five_prime_UTR 50.0%
AGCCATTCACAGTGCTCCAA+TGG + chr6_2:70659950-70659969 None:intergenic 50.0%
ACCTGCAACTAACACGAGTG+AGG - chr6_2:70658230-70658249 Msa0926670:CDS 50.0%
TCCTCACTCGTGTTAGTTGC+AGG + chr6_2:70658234-70658253 None:intergenic 50.0%
ATCAGTGTTCCTGTCGTGTC+CGG - chr6_2:70659201-70659220 Msa0926670:intron 50.0%
CAGTGCTCCAATGGTGTGAT+GGG + chr6_2:70659941-70659960 None:intergenic 50.0%
ACAGTGCTCCAATGGTGTGA+TGG + chr6_2:70659942-70659961 None:intergenic 50.0%
!! CACCATTGGAGCACTGTGAA+TGG - chr6_2:70659945-70659964 Msa0926670:five_prime_UTR 50.0%
AGCCATTCACAGTGCTCCAA+TGG + chr6_2:70659950-70659969 None:intergenic 50.0%
GCCCAAACAGCAAGTGCAAG+AGG + chr6_2:70658771-70658790 None:intergenic 55.0%
!! GTGTCGGTGTTGTTCGGTGT+CGG + chr6_2:70659149-70659168 None:intergenic 55.0%
ACGTATACGGACACGGACAC+CGG + chr6_2:70659223-70659242 None:intergenic 55.0%
AAGTTTCACCGCCTTTCCCC+TGG - chr6_2:70660049-70660068 Msa0926670:five_prime_UTR 55.0%
GCCCAAACAGCAAGTGCAAG+AGG + chr6_2:70658771-70658790 None:intergenic 55.0%
!! GTGTCGGTGTTGTTCGGTGT+CGG + chr6_2:70659149-70659168 None:intergenic 55.0%
ACGTATACGGACACGGACAC+CGG + chr6_2:70659223-70659242 None:intergenic 55.0%
AAGTTTCACCGCCTTTCCCC+TGG - chr6_2:70660049-70660068 Msa0926670:five_prime_UTR 55.0%
ACACGGACACCGGACACGAC+AGG + chr6_2:70659213-70659232 None:intergenic 65.0%
ACACGGACACCGGACACGAC+AGG + chr6_2:70659213-70659232 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 70658208 70660087 70658208 ID=Msa0926670;Name=Msa0926670
chr6_2 mRNA 70658208 70660087 70658208 ID=Msa0926670-mRNA-1;Parent=Msa0926670;Name=Msa0926670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=395|0|0.5|1|1|1|2|0|115
chr6_2 exon 70658208 70658357 70658208 ID=Msa0926670-mRNA-1:exon:11575;Parent=Msa0926670-mRNA-1
chr6_2 exon 70659495 70660087 70659495 ID=Msa0926670-mRNA-1:exon:11574;Parent=Msa0926670-mRNA-1
chr6_2 five_prime_UTR 70659693 70660087 70659693 ID=Msa0926670-mRNA-1:five_prime_utr;Parent=Msa0926670-mRNA-1
chr6_2 CDS 70659495 70659692 70659495 ID=Msa0926670-mRNA-1:cds;Parent=Msa0926670-mRNA-1
chr6_2 CDS 70658208 70658357 70658208 ID=Msa0926670-mRNA-1:cds;Parent=Msa0926670-mRNA-1
Gene Sequence

>Msa0926670

ATGAGTAGAAAGAAAAGGGTATTTTCAATTGATAGTATTGAAGAGGTTGCTGTGGATTTCTTCAACTATGTTTTGCAGGAGAAGCCAAAGATTCCATTTTTCATTCCAGTTATTTTGATTGCTTGTGCTGTTGAAAAATGGGTCTTTTCTTTTTCTACTTGGGTTCCTCTTGCACTTGCTGTTTGGGCTACTATACAGCCCATCACACCATTGGAGCACTGTGAATGGCTCAATAAACTGTTGACAGAAATCTGGCCCAACTACTTTAACCCCAAGCTTTCATCAAGGTTATCAGCTATAGTTGAGGTGAAGTTTCACCGCCTTTCCCCTGGTTTTTACTTGTTGTAG

Protein sequence

>Msa0926670

MSRKKRVFSIDSIEEVAVDFFNYVLQEKPKIPFFIPVILIACAVEKWVFSFSTWVPLALAVWATIQPITPLEHCEWLNKLLTEIWPNYFNPKLSSRLSAIVEVKFHRLSPGFYLL*