Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382260 | KEH23428.1 | 81.395 | 43 | 4 | 1 | 18 | 60 | 1 | 39 | 4.87e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382260 | A0A072U2R1 | 81.395 | 43 | 4 | 1 | 18 | 60 | 1 | 39 | 2.33e-12 | 68.9 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035120 | Msa0382260 | 0.814903 | 1.215158e-51 | -8.615850e-47 |
| Msa0054820 | Msa0382260 | 0.816416 | 5.593978e-52 | -8.615850e-47 |
| Msa0056450 | Msa0382260 | 0.821011 | 5.063874e-53 | -8.615850e-47 |
| Msa0058600 | Msa0382260 | 0.803834 | 2.884612e-49 | -8.615850e-47 |
| Msa0061340 | Msa0382260 | 0.802858 | 4.595867e-49 | -8.615850e-47 |
| Msa0064110 | Msa0382260 | 0.807640 | 4.578738e-50 | -8.615850e-47 |
| Msa0091780 | Msa0382260 | 0.811367 | 7.254849e-51 | -8.615850e-47 |
| Msa0126230 | Msa0382260 | 0.801175 | 1.019450e-48 | -8.615850e-47 |
| Msa0133820 | Msa0382260 | 0.804178 | 2.446888e-49 | -8.615850e-47 |
| Msa0143850 | Msa0382260 | 0.805457 | 1.322450e-49 | -8.615850e-47 |
| Msa0160670 | Msa0382260 | 0.812158 | 4.881106e-51 | -8.615850e-47 |
| Msa0183760 | Msa0382260 | 0.805431 | 1.339078e-49 | -8.615850e-47 |
| Msa0191890 | Msa0382260 | 0.805360 | 1.386404e-49 | -8.615850e-47 |
| Msa0218350 | Msa0382260 | 0.803827 | 2.895082e-49 | -8.615850e-47 |
| Msa0225670 | Msa0382260 | 0.814440 | 1.539218e-51 | -8.615850e-47 |
| Msa0230370 | Msa0382260 | 0.819492 | 1.128846e-52 | -8.615850e-47 |
| Msa0379610 | Msa0382260 | 0.802277 | 6.055163e-49 | -8.615850e-47 |
| Msa0382260 | Msa0382270 | 0.840256 | 9.703025e-58 | -8.615850e-47 |
| Msa0382260 | Msa0387370 | 0.825129 | 5.546181e-54 | -8.615850e-47 |
| Msa0382260 | Msa0388220 | 0.802492 | 5.467082e-49 | -8.615850e-47 |
| Msa0382260 | Msa0392200 | 0.810951 | 8.926766e-51 | -8.615850e-47 |
| Msa0382260 | Msa0394140 | 0.804314 | 2.292491e-49 | -8.615850e-47 |
| Msa0382260 | Msa0395980 | 0.805279 | 1.441074e-49 | -8.615850e-47 |
| Msa0382260 | Msa0397460 | 0.812765 | 3.595988e-51 | -8.615850e-47 |
| Msa0382260 | Msa0403260 | 0.800092 | 1.695053e-48 | -8.615850e-47 |
| Msa0382260 | Msa0417650 | 0.803123 | 4.050511e-49 | -8.615850e-47 |
| Msa0382260 | Msa0417730 | 0.801777 | 7.671907e-49 | -8.615850e-47 |
| Msa0382260 | Msa0432170 | 0.804226 | 2.391654e-49 | -8.615850e-47 |
| Msa0382260 | Msa0455740 | 0.807065 | 6.063188e-50 | -8.615850e-47 |
| Msa0382260 | Msa0468250 | 0.811050 | 8.498873e-51 | -8.615850e-47 |
| Msa0382260 | Msa0468800 | 0.816269 | 6.034285e-52 | -8.615850e-47 |
| Msa0382260 | Msa0476680 | 0.803553 | 3.299063e-49 | -8.615850e-47 |
| Msa0382260 | Msa0510290 | 0.823630 | 1.249090e-53 | -8.615850e-47 |
| Msa0382260 | Msa0518960 | 0.801957 | 7.044986e-49 | -8.615850e-47 |
| Msa0382260 | Msa0520700 | 0.812311 | 4.518506e-51 | -8.615850e-47 |
| Msa0382260 | Msa0520710 | 0.831258 | 1.848870e-55 | -8.615850e-47 |
| Msa0382260 | Msa0521010 | 0.804823 | 1.795391e-49 | -8.615850e-47 |
| Msa0382260 | Msa0559500 | 0.804131 | 2.503138e-49 | -8.615850e-47 |
| Msa0382260 | Msa0576680 | 0.808371 | 3.200152e-50 | -8.615850e-47 |
| Msa0382260 | Msa0615010 | 0.804537 | 2.059665e-49 | -8.615850e-47 |
| Msa0382260 | Msa0615030 | 0.807321 | 5.352007e-50 | -8.615850e-47 |
| Msa0382260 | Msa0615220 | 0.832300 | 1.022893e-55 | -8.615850e-47 |
| Msa0382260 | Msa0626280 | 0.807475 | 4.964237e-50 | -8.615850e-47 |
| Msa0382260 | Msa0641730 | 0.810681 | 1.021406e-50 | -8.615850e-47 |
| Msa0382260 | Msa0661320 | 0.822284 | 2.572091e-53 | -8.615850e-47 |
| Msa0382260 | Msa0687450 | 0.817933 | 2.550516e-52 | -8.615850e-47 |
| Msa0382260 | Msa0689420 | 0.814919 | 1.205337e-51 | -8.615850e-47 |
| Msa0382260 | Msa0689760 | 0.839921 | 1.186751e-57 | -8.615850e-47 |
| Msa0382260 | Msa0703660 | 0.804624 | 1.975413e-49 | -8.615850e-47 |
| Msa0382260 | Msa0716860 | 0.836784 | 7.636847e-57 | -8.615850e-47 |
| Msa0382260 | Msa0749400 | 0.824541 | 7.632531e-54 | -8.615850e-47 |
| Msa0382260 | Msa0751260 | 0.814514 | 1.481961e-51 | -8.615850e-47 |
| Msa0382260 | Msa0756380 | 0.823473 | 1.359003e-53 | -8.615850e-47 |
| Msa0382260 | Msa0756530 | 0.829372 | 5.341467e-55 | -8.615850e-47 |
| Msa0382260 | Msa0757800 | 0.849893 | 2.412877e-60 | -8.615850e-47 |
| Msa0382260 | Msa0780280 | 0.802633 | 5.113945e-49 | -8.615850e-47 |
| Msa0382260 | Msa0787150 | 0.817855 | 2.655473e-52 | -8.615850e-47 |
| Msa0382260 | Msa0800700 | 0.804734 | 1.873910e-49 | -8.615850e-47 |
| Msa0382260 | Msa0805430 | 0.805364 | 1.383328e-49 | -8.615850e-47 |
| Msa0382260 | Msa0821800 | 0.805303 | 1.424930e-49 | -8.615850e-47 |
| Msa0382260 | Msa0828660 | 0.805015 | 1.636991e-49 | -8.615850e-47 |
| Msa0382260 | Msa0868160 | 0.824548 | 7.605448e-54 | -8.615850e-47 |
| Msa0382260 | Msa0896240 | 0.807354 | 5.266934e-50 | -8.615850e-47 |
| Msa0382260 | Msa0926670 | 0.817855 | 2.655554e-52 | -8.615850e-47 |
| Msa0382260 | Msa0936390 | 0.813754 | 2.181383e-51 | -8.615850e-47 |
| Msa0382260 | Msa0986510 | 0.810323 | 1.220746e-50 | -8.615850e-47 |
| Msa0382260 | Msa1010070 | 0.803653 | 3.145550e-49 | -8.615850e-47 |
| Msa0382260 | Msa1031230 | 0.802855 | 4.601285e-49 | -8.615850e-47 |
| Msa0382260 | Msa1088410 | 0.803486 | 3.407798e-49 | -8.615850e-47 |
| Msa0382260 | Msa1095790 | 0.808208 | 3.466493e-50 | -8.615850e-47 |
| Msa0382260 | Msa1201640 | 0.820925 | 5.301400e-53 | -8.615850e-47 |
| Msa0382260 | Msa1211340 | 0.826413 | 2.749972e-54 | -8.615850e-47 |
| Msa0382260 | Msa1253450 | 0.800938 | 1.139276e-48 | -8.615850e-47 |
| Msa0382260 | Msa1259640 | 0.831579 | 1.541081e-55 | -8.615850e-47 |
| Msa0382260 | Msa1283740 | 0.800393 | 1.471746e-48 | -8.615850e-47 |
| Msa0382260 | Msa1293590 | 0.806671 | 7.344209e-50 | -8.615850e-47 |
| Msa0382260 | Msa1329790 | 0.832064 | 1.169586e-55 | -8.615850e-47 |
| Msa0382260 | Msa1401270 | 0.804692 | 1.911820e-49 | -8.615850e-47 |
| Msa0382260 | Msa1420250 | 0.835991 | 1.215567e-56 | -8.615850e-47 |
| Msa0382260 | Msa1426910 | 0.824801 | 6.629480e-54 | -8.615850e-47 |
| Msa0382260 | Msa1435070 | 0.846574 | 1.994606e-59 | -8.615850e-47 |
| Msa0382260 | Msa1435080 | 0.916621 | 1.428858e-85 | -8.615850e-47 |
| Msa0382260 | Msa1439700 | 0.843430 | 1.408257e-58 | -8.615850e-47 |
| Msa0382260 | Msa1439710 | 0.927831 | 6.782414e-92 | -8.615850e-47 |
| Msa0382260 | Msa1446780 | 0.808708 | 2.711459e-50 | -8.615850e-47 |
| Msa0382260 | Msa1464290 | 0.814968 | 1.175621e-51 | -8.615850e-47 |
| Msa0382260 | Msa1466590 | 0.808746 | 2.661715e-50 | -8.615850e-47 |
| Msa0382260 | Msa1467000 | 0.808591 | 2.873237e-50 | -8.615850e-47 |
| Msa0271550 | Msa0382260 | 0.810962 | 8.879123e-51 | -8.615850e-47 |
| Msa0304100 | Msa0382260 | 0.819817 | 9.516273e-53 | -8.615850e-47 |
| Msa0305330 | Msa0382260 | 0.820450 | 6.815337e-53 | -8.615850e-47 |
| Msa0319290 | Msa0382260 | 0.810480 | 1.128590e-50 | -8.615850e-47 |
| Msa0340690 | Msa0382260 | 0.800671 | 1.292065e-48 | -8.615850e-47 |
| Msa0340710 | Msa0382260 | 0.803000 | 4.296179e-49 | -8.615850e-47 |
| Msa0342010 | Msa0382260 | 0.800638 | 1.311942e-48 | -8.615850e-47 |
| Msa0343300 | Msa0382260 | 0.804541 | 2.055775e-49 | -8.615850e-47 |
| Msa0347990 | Msa0382260 | 0.808306 | 3.303966e-50 | -8.615850e-47 |
| Msa0358400 | Msa0382260 | 0.825683 | 4.100021e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATGTCATGAAGCGATTT+TGG | 0.142839 | 3_1:-84732862 | None:intergenic |
| GGGCTCACTTTAGAAGTATT+TGG | 0.144391 | 3_1:+84735256 | Msa0382260:CDS |
| TTTAAAGAGGTTTCAATTAT+TGG | 0.165386 | 3_1:+84732330 | Msa0382260:CDS |
| CAGCCCGATCATGTTATATC+TGG | 0.249251 | 3_1:+84735235 | Msa0382260:CDS |
| GGCTCACTTTAGAAGTATTT+GGG | 0.284675 | 3_1:+84735257 | Msa0382260:CDS |
| CTCCGCATCTCTCGGGAATC+AGG | 0.292244 | 3_1:+84733455 | Msa0382260:CDS |
| CTTTGTGGTCGTCTCCCTTC+AGG | 0.311368 | 3_1:-84732407 | None:intergenic |
| AGATTTCTCTGTCGAACATT+TGG | 0.320229 | 3_1:+84733427 | Msa0382260:CDS |
| GTTAAGGTTGTTGCTGGTTG+TGG | 0.329970 | 3_1:+84732375 | Msa0382260:CDS |
| GTGGTTGTTAAGGTTGTTGC+TGG | 0.335193 | 3_1:+84732369 | Msa0382260:CDS |
| TTCTGTGAATGTGGTTGTTA+AGG | 0.361374 | 3_1:+84732359 | Msa0382260:CDS |
| TTAAGGTTGTTGCTGGTTGT+GGG | 0.373170 | 3_1:+84732376 | Msa0382260:CDS |
| TTGTTGCTGGTTGTGGGAGG+TGG | 0.374353 | 3_1:+84732382 | Msa0382260:CDS |
| TCATCTTGCTCCCACCTTTG+TGG | 0.374883 | 3_1:-84732422 | None:intergenic |
| GTTCAGGGTTTATGAGGTTG+AGG | 0.421807 | 3_1:-84735320 | None:intergenic |
| TTCAGGGTTTATGAGGTTGA+GGG | 0.425564 | 3_1:-84735319 | None:intergenic |
| GATTTGGTGAAGAAGAAAGT+TGG | 0.428682 | 3_1:+84732233 | Msa0382260:intron |
| GATCAGAACAATTACGATGA+AGG | 0.448729 | 3_1:-84732945 | None:intergenic |
| GGATCGACTCCGCATCTCTC+GGG | 0.452420 | 3_1:+84733448 | Msa0382260:CDS |
| TTGTGGGAGGTGGAGCCTGA+AGG | 0.457754 | 3_1:+84732392 | Msa0382260:CDS |
| GACCTGGTTCAGGGTTTATG+AGG | 0.457813 | 3_1:-84735326 | None:intergenic |
| TGGATCGACTCCGCATCTCT+CGG | 0.459058 | 3_1:+84733447 | Msa0382260:CDS |
| ATTTGGTGAAGAAGAAAGTT+GGG | 0.459706 | 3_1:+84732234 | Msa0382260:CDS |
| AATGAAGGTAAGCCATGCTT+TGG | 0.472531 | 3_1:+84732299 | Msa0382260:CDS |
| AGATATAACATGATCGGGCT+GGG | 0.479381 | 3_1:-84735233 | None:intergenic |
| AGCCCAGATATAACATGATC+GGG | 0.491687 | 3_1:-84735238 | None:intergenic |
| ATCAGAACAATTACGATGAA+GGG | 0.495680 | 3_1:-84732944 | None:intergenic |
| TTGCAGAGGAAGAGAAATGA+AGG | 0.495804 | 3_1:+84732284 | Msa0382260:intron |
| CAGATATAACATGATCGGGC+TGG | 0.497533 | 3_1:-84735234 | None:intergenic |
| TTTGGTTCACACATTTAAAG+AGG | 0.508262 | 3_1:+84732317 | Msa0382260:CDS |
| TGGTTGTGTTTCTGTGAATG+TGG | 0.521498 | 3_1:+84732350 | Msa0382260:CDS |
| AGGTTGTTGCTGGTTGTGGG+AGG | 0.530134 | 3_1:+84732379 | Msa0382260:CDS |
| TGTGGGAGGTGGAGCCTGAA+GGG | 0.539977 | 3_1:+84732393 | Msa0382260:CDS |
| AGCCCGATCATGTTATATCT+GGG | 0.545283 | 3_1:+84735236 | Msa0382260:CDS |
| GAGCCCAGATATAACATGAT+CGG | 0.548172 | 3_1:-84735239 | None:intergenic |
| TAAATGTGTGAACCAAAGCA+TGG | 0.589815 | 3_1:-84732311 | None:intergenic |
| AACCTGATTCCCGAGAGATG+CGG | 0.692711 | 3_1:-84733457 | None:intergenic |
| CTGAAGGGAGACGACCACAA+AGG | 0.700107 | 3_1:+84732408 | Msa0382260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAGAATAAAATTTTTGT+TGG | - | chr3_1:84733657-84733676 | None:intergenic | 10.0% |
| !!! | GTTATTTTAAATTTTACAAA+CGG | - | chr3_1:84734437-84734456 | None:intergenic | 10.0% |
| !! | ATATCTAAGTTAAATTTAAT+TGG | + | chr3_1:84734834-84734853 | Msa0382260:intron | 10.0% |
| !! | TTGTATATAATAATGATAAT+TGG | - | chr3_1:84735090-84735109 | None:intergenic | 10.0% |
| !!! | GAAAAAACTTTTTCTTTTTT+CGG | - | chr3_1:84732742-84732761 | None:intergenic | 15.0% |
| !!! | TAGAATTTGGATTTTTTTTT+TGG | + | chr3_1:84733009-84733028 | Msa0382260:intron | 15.0% |
| !!! | AGAATTTGGATTTTTTTTTT+GGG | + | chr3_1:84733010-84733029 | Msa0382260:intron | 15.0% |
| !!! | AATAAATAAATGGTGTTTTT+TGG | - | chr3_1:84733825-84733844 | None:intergenic | 15.0% |
| !!! | TGGTTCAATTTTTTTTTTTT+TGG | + | chr3_1:84734668-84734687 | Msa0382260:intron | 15.0% |
| !!! | TTTTTTTTTTTTGGTTTAGT+TGG | + | chr3_1:84734677-84734696 | Msa0382260:intron | 15.0% |
| !!! | TTTTTTTTTTTGGTTTAGTT+GGG | + | chr3_1:84734678-84734697 | Msa0382260:intron | 15.0% |
| !! | ATATATATCTATATATATGC+AGG | + | chr3_1:84735113-84735132 | Msa0382260:intron | 15.0% |
| !! | TTTAAAGAGGTTTCAATTAT+TGG | + | chr3_1:84732330-84732349 | Msa0382260:CDS | 20.0% |
| !! | AACAATCTAACTATTTATCT+TGG | + | chr3_1:84732512-84732531 | Msa0382260:intron | 20.0% |
| !! | ACAATCTAACTATTTATCTT+GGG | + | chr3_1:84732513-84732532 | Msa0382260:intron | 20.0% |
| !! | ATTCATACATTGATATTTCT+AGG | + | chr3_1:84733097-84733116 | Msa0382260:intron | 20.0% |
| !!! | AGAATTGTGATATTTAAGTT+TGG | + | chr3_1:84733343-84733362 | Msa0382260:intron | 20.0% |
| !! | TCTAGAAAAGTTATATTCAA+TGG | + | chr3_1:84733540-84733559 | Msa0382260:intron | 20.0% |
| !!! | TTTGACTTTTTTTTGACAAA+AGG | - | chr3_1:84733720-84733739 | None:intergenic | 20.0% |
| !!! | GTTTACTTTCAGTTTTTTTT+TGG | - | chr3_1:84733995-84734014 | None:intergenic | 20.0% |
| !! | TCATATAAATTCCCATAAAA+TGG | + | chr3_1:84734183-84734202 | Msa0382260:intron | 20.0% |
| !! | CATTGTATAAAGTGAAATTA+AGG | + | chr3_1:84734902-84734921 | Msa0382260:intron | 20.0% |
| !! | TACTTAATGATATATATGTG+TGG | + | chr3_1:84735007-84735026 | Msa0382260:intron | 20.0% |
| !! | ACTTAATGATATATATGTGT+GGG | + | chr3_1:84735008-84735027 | Msa0382260:intron | 20.0% |
| ! | TTATTACTTGTGAGTAGATT+TGG | + | chr3_1:84732217-84732236 | Msa0382260:intron | 25.0% |
| !!! | TTTTGAAGGCATATAAAAGT+GGG | - | chr3_1:84732584-84732603 | None:intergenic | 25.0% |
| !!! | TTTTTGAAGGCATATAAAAG+TGG | - | chr3_1:84732585-84732604 | None:intergenic | 25.0% |
| !!! | AATGACAACGCAATTTTAAT+TGG | + | chr3_1:84732622-84732641 | Msa0382260:intron | 25.0% |
| !! | TTAATTCTTCTGATTTGATG+AGG | + | chr3_1:84733033-84733052 | Msa0382260:intron | 25.0% |
| !! | TCAAGAAATTGACATTTTCT+AGG | + | chr3_1:84733158-84733177 | Msa0382260:intron | 25.0% |
| ! | AATCAACTTAACCTAGAAAA+TGG | - | chr3_1:84733172-84733191 | None:intergenic | 25.0% |
| !! | TTGGTAGTTAATATACTTTG+CGG | - | chr3_1:84733806-84733825 | None:intergenic | 25.0% |
| ! | TCTTCCATTATATACCAAAT+AGG | - | chr3_1:84734313-84734332 | None:intergenic | 25.0% |
| !! | ATTTGGTATATAATGGAAGA+CGG | + | chr3_1:84734313-84734332 | Msa0382260:intron | 25.0% |
| ! | AGTTCGAAATGTAAATTGTT+CGG | - | chr3_1:84734469-84734488 | None:intergenic | 25.0% |
| !! | TGTTTCGGAATTGTTATTAA+TGG | + | chr3_1:84734648-84734667 | Msa0382260:intron | 25.0% |
| ! | CACATACATGATGTATAATA+GGG | - | chr3_1:84734745-84734764 | None:intergenic | 25.0% |
| ! | ACACATACATGATGTATAAT+AGG | - | chr3_1:84734746-84734765 | None:intergenic | 25.0% |
| ! | AGAGTGTGTGAATAAATTAA+AGG | - | chr3_1:84734805-84734824 | None:intergenic | 25.0% |
| ! | AATTTAATTGGATCAAAACG+AGG | + | chr3_1:84734846-84734865 | Msa0382260:intron | 25.0% |
| ! | TTCTAAATCAAATATTCACG+TGG | + | chr3_1:84734933-84734952 | Msa0382260:intron | 25.0% |
| ! | TTGGAAAATGTTGAATATAG+AGG | + | chr3_1:84734962-84734981 | Msa0382260:intron | 25.0% |
| ! | CTTAATGATATATATGTGTG+GGG | + | chr3_1:84735009-84735028 | Msa0382260:intron | 25.0% |
| ! | CCAAAATACTAAAATACATC+CGG | - | chr3_1:84735179-84735198 | None:intergenic | 25.0% |
| !!! | CGGATGTATTTTAGTATTTT+GGG | + | chr3_1:84735177-84735196 | Msa0382260:intron | 25.0% |
| !! | ACGTTAAAGAGTAATTTTAG+AGG | + | chr3_1:84735200-84735219 | Msa0382260:intron | 25.0% |
| ! | ATTTGGTGAAGAAGAAAGTT+GGG | + | chr3_1:84732234-84732253 | Msa0382260:CDS | 30.0% |
| ! | TTTGGTTCACACATTTAAAG+AGG | + | chr3_1:84732317-84732336 | Msa0382260:CDS | 30.0% |
| ATCAGAACAATTACGATGAA+GGG | - | chr3_1:84732947-84732966 | None:intergenic | 30.0% | |
| !!! | TGATGTAATTGCCATTTTCT+AGG | + | chr3_1:84733198-84733217 | Msa0382260:intron | 30.0% |
| CTAATCAAATGCACTAACAT+GGG | - | chr3_1:84733511-84733530 | None:intergenic | 30.0% | |
| ACTAATCAAATGCACTAACA+TGG | - | chr3_1:84733512-84733531 | None:intergenic | 30.0% | |
| ! | GTTAGTGCATTTGATTAGTT+TGG | + | chr3_1:84733513-84733532 | Msa0382260:intron | 30.0% |
| TCTTTCTTAATGTGTTGAGT+TGG | - | chr3_1:84733617-84733636 | None:intergenic | 30.0% | |
| !! | TTTTTCGATGATTTCCTTGT+TGG | - | chr3_1:84733754-84733773 | None:intergenic | 30.0% |
| TGGTAGTTAATATACTTTGC+GGG | - | chr3_1:84733805-84733824 | None:intergenic | 30.0% | |
| !! | TTGTTTTTCAGATCTTTCCT+TGG | - | chr3_1:84733886-84733905 | None:intergenic | 30.0% |
| TGCTCAATTAGAACAATACA+TGG | - | chr3_1:84734072-84734091 | None:intergenic | 30.0% | |
| ! | ATAGCAACACTCCATTTTAT+GGG | - | chr3_1:84734197-84734216 | None:intergenic | 30.0% |
| ! | TATAGCAACACTCCATTTTA+TGG | - | chr3_1:84734198-84734217 | None:intergenic | 30.0% |
| ! | CATTTAAGAAAAGCGCATAA+TGG | - | chr3_1:84734230-84734249 | None:intergenic | 30.0% |
| ATGGCCTATTTGGTATATAA+TGG | + | chr3_1:84734306-84734325 | Msa0382260:intron | 30.0% | |
| TCTCATAATGTATTAGCAGT+GGG | + | chr3_1:84734383-84734402 | Msa0382260:intron | 30.0% | |
| GAAACAGTTCGGTAATAATT+TGG | - | chr3_1:84734614-84734633 | None:intergenic | 30.0% | |
| ATAACAATTCCGAAACAGTT+CGG | - | chr3_1:84734645-84734664 | None:intergenic | 30.0% | |
| TTGGGTTCAATTTATGAGTT+TGG | + | chr3_1:84734696-84734715 | Msa0382260:intron | 30.0% | |
| !!! | ATGAGTTTGGTTCAGTTTTT+TGG | + | chr3_1:84734709-84734728 | Msa0382260:intron | 30.0% |
| AATATTCACGTGGAAATGTT+TGG | + | chr3_1:84734943-84734962 | Msa0382260:intron | 30.0% | |
| AAATACTAAAATACATCCGG+CGG | - | chr3_1:84735176-84735195 | None:intergenic | 30.0% | |
| !!! | CCGGATGTATTTTAGTATTT+TGG | + | chr3_1:84735176-84735195 | Msa0382260:intron | 30.0% |
| !! | AAAGAGTAATTTTAGAGGAG+TGG | + | chr3_1:84735205-84735224 | Msa0382260:intron | 30.0% |
| !! | GATTTGGTGAAGAAGAAAGT+TGG | + | chr3_1:84732233-84732252 | Msa0382260:intron | 35.0% |
| TAAATGTGTGAACCAAAGCA+TGG | - | chr3_1:84732314-84732333 | None:intergenic | 35.0% | |
| TTCTGTGAATGTGGTTGTTA+AGG | + | chr3_1:84732359-84732378 | Msa0382260:CDS | 35.0% | |
| GAAGCTATTGAGATCATATG+TGG | + | chr3_1:84732461-84732480 | Msa0382260:intron | 35.0% | |
| TATTTATCTTGGGTGACTCA+TGG | + | chr3_1:84732523-84732542 | Msa0382260:intron | 35.0% | |
| !! | TGTTAGGAACGGATTTTTGA+AGG | - | chr3_1:84732598-84732617 | None:intergenic | 35.0% |
| TGTCATTGTCATGTTAGGAA+CGG | - | chr3_1:84732609-84732628 | None:intergenic | 35.0% | |
| ! | CTATGTCATGAAGCGATTTT+GGG | - | chr3_1:84732864-84732883 | None:intergenic | 35.0% |
| GATCAGAACAATTACGATGA+AGG | - | chr3_1:84732948-84732967 | None:intergenic | 35.0% | |
| AGATTTCTCTGTCGAACATT+TGG | + | chr3_1:84733427-84733446 | Msa0382260:CDS | 35.0% | |
| !! | ATGTGTTGAGTTGGAGAAAT+TGG | - | chr3_1:84733608-84733627 | None:intergenic | 35.0% |
| TTTGCGGGTATATGTATGAA+CGG | - | chr3_1:84733790-84733809 | None:intergenic | 35.0% | |
| ! | TTTCCTTGGTAGGTATTTTG+TGG | - | chr3_1:84733872-84733891 | None:intergenic | 35.0% |
| ! | TTTTCAGATCTTTCCTTGGT+AGG | - | chr3_1:84733882-84733901 | None:intergenic | 35.0% |
| TGAATTGAATGCAGTTCATG+TGG | - | chr3_1:84734034-84734053 | None:intergenic | 35.0% | |
| CTTCTTCTTCTTCAACAATG+TGG | + | chr3_1:84734136-84734155 | Msa0382260:intron | 35.0% | |
| GAAACTCACAAGAAGATTCA+AGG | - | chr3_1:84734278-84734297 | None:intergenic | 35.0% | |
| TTGTGAGTTTCACTATGCTA+TGG | + | chr3_1:84734287-84734306 | Msa0382260:intron | 35.0% | |
| TACAAAGGCAGTAGTGAAAA+AGG | - | chr3_1:84734354-84734373 | None:intergenic | 35.0% | |
| ATGAGAGACGTGAAATACAA+AGG | - | chr3_1:84734369-84734388 | None:intergenic | 35.0% | |
| CTCTCATAATGTATTAGCAG+TGG | + | chr3_1:84734382-84734401 | Msa0382260:intron | 35.0% | |
| !!! | TGGTTCGTTTTAGAACAGTT+CGG | - | chr3_1:84734515-84734534 | None:intergenic | 35.0% |
| ACGAACCAAACTGTTGTTAT+TGG | + | chr3_1:84734527-84734546 | Msa0382260:intron | 35.0% | |
| ! | AAATGTGCACTTTTGCTTGT+TGG | - | chr3_1:84735049-84735068 | None:intergenic | 35.0% |
| !! | CAAAAGTGCACATTTTCGTT+TGG | + | chr3_1:84735054-84735073 | Msa0382260:intron | 35.0% |
| AAATTGCAATTAATTGCCGC+CGG | + | chr3_1:84735157-84735176 | Msa0382260:intron | 35.0% | |
| !! | GGCTCACTTTAGAAGTATTT+GGG | + | chr3_1:84735257-84735276 | Msa0382260:CDS | 35.0% |
| !! | AAGTTGGGTGTTTTTGTGAG+AGG | + | chr3_1:84732249-84732268 | Msa0382260:CDS | 40.0% |
| ! | GGTGTGATTTTGAATTGCAG+AGG | + | chr3_1:84732270-84732289 | Msa0382260:intron | 40.0% |
| TTGCAGAGGAAGAGAAATGA+AGG | + | chr3_1:84732284-84732303 | Msa0382260:intron | 40.0% | |
| AATGAAGGTAAGCCATGCTT+TGG | + | chr3_1:84732299-84732318 | Msa0382260:CDS | 40.0% | |
| ! | TGGTTGTGTTTCTGTGAATG+TGG | + | chr3_1:84732350-84732369 | Msa0382260:CDS | 40.0% |
| ! | TTAAGGTTGTTGCTGGTTGT+GGG | + | chr3_1:84732376-84732395 | Msa0382260:CDS | 40.0% |
| GGAGCAAGATGAGAAAAGTT+TGG | + | chr3_1:84732433-84732452 | Msa0382260:intron | 40.0% | |
| GTGGCATTTAACATGGGAAA+GGG | - | chr3_1:84732562-84732581 | None:intergenic | 40.0% | |
| AAGTGGGTGGCATTTAACAT+GGG | - | chr3_1:84732568-84732587 | None:intergenic | 40.0% | |
| AAAGTGGGTGGCATTTAACA+TGG | - | chr3_1:84732569-84732588 | None:intergenic | 40.0% | |
| ! | TGAAGGCATATAAAAGTGGG+TGG | - | chr3_1:84732581-84732600 | None:intergenic | 40.0% |
| TGCGTTGTCATTGTCATGTT+AGG | - | chr3_1:84732614-84732633 | None:intergenic | 40.0% | |
| ! | GCTATGTCATGAAGCGATTT+TGG | - | chr3_1:84732865-84732884 | None:intergenic | 40.0% |
| TTCTAACTCAGCGATTGGAA+CGG | - | chr3_1:84732994-84733013 | None:intergenic | 40.0% | |
| CCAAATTCTAACTCAGCGAT+TGG | - | chr3_1:84732999-84733018 | None:intergenic | 40.0% | |
| CCAATCGCTGAGTTAGAATT+TGG | + | chr3_1:84732996-84733015 | Msa0382260:intron | 40.0% | |
| !!! | GTGTTTTGACTTCTGTGATG+GGG | - | chr3_1:84733698-84733717 | None:intergenic | 40.0% |
| !!! | GGTGTTTTGACTTCTGTGAT+GGG | - | chr3_1:84733699-84733718 | None:intergenic | 40.0% |
| !!! | AGGTGTTTTGACTTCTGTGA+TGG | - | chr3_1:84733700-84733719 | None:intergenic | 40.0% |
| TCGATGATTTCCTTGTTGGA+GGG | - | chr3_1:84733750-84733769 | None:intergenic | 40.0% | |
| TTCGATGATTTCCTTGTTGG+AGG | - | chr3_1:84733751-84733770 | None:intergenic | 40.0% | |
| TTGCGGGTATATGTATGAAC+GGG | - | chr3_1:84733789-84733808 | None:intergenic | 40.0% | |
| CTTCCACAAAATACCTACCA+AGG | + | chr3_1:84733866-84733885 | Msa0382260:intron | 40.0% | |
| TGAATGCAGTTCATGTGGAT+CGG | - | chr3_1:84734029-84734048 | None:intergenic | 40.0% | |
| GCATTCAATTCACAAGTGCA+AGG | + | chr3_1:84734042-84734061 | Msa0382260:intron | 40.0% | |
| AAGAAGAAGAAGACGAGAGT+TGG | - | chr3_1:84734125-84734144 | None:intergenic | 40.0% | |
| TCACTATGCTATGGCCTATT+TGG | + | chr3_1:84734296-84734315 | Msa0382260:intron | 40.0% | |
| AAAGGCAGTAGTGAAAAAGG+TGG | - | chr3_1:84734351-84734370 | None:intergenic | 40.0% | |
| TAATGTATTAGCAGTGGGCA+TGG | + | chr3_1:84734388-84734407 | Msa0382260:intron | 40.0% | |
| CGGTACCAATAACAACAGTT+TGG | - | chr3_1:84734535-84734554 | None:intergenic | 40.0% | |
| ! | CGGTTTGATTCGAAACAGTT+CGG | - | chr3_1:84734625-84734644 | None:intergenic | 40.0% |
| CGAATCAAACCGAACTGTTT+CGG | + | chr3_1:84734633-84734652 | Msa0382260:intron | 40.0% | |
| AGATATAACATGATCGGGCT+GGG | - | chr3_1:84735236-84735255 | None:intergenic | 40.0% | |
| AGCCCGATCATGTTATATCT+GGG | + | chr3_1:84735236-84735255 | Msa0382260:CDS | 40.0% | |
| AGCCCAGATATAACATGATC+GGG | - | chr3_1:84735241-84735260 | None:intergenic | 40.0% | |
| GAGCCCAGATATAACATGAT+CGG | - | chr3_1:84735242-84735261 | None:intergenic | 40.0% | |
| !! | GGGCTCACTTTAGAAGTATT+TGG | + | chr3_1:84735256-84735275 | Msa0382260:CDS | 40.0% |
| GTGGTTGTTAAGGTTGTTGC+TGG | + | chr3_1:84732369-84732388 | Msa0382260:CDS | 45.0% | |
| ! | GTTAAGGTTGTTGCTGGTTG+TGG | + | chr3_1:84732375-84732394 | Msa0382260:CDS | 45.0% |
| GGTGGCATTTAACATGGGAA+AGG | - | chr3_1:84732563-84732582 | None:intergenic | 45.0% | |
| AAAACACCTACCCTCCAACA+AGG | + | chr3_1:84733737-84733756 | Msa0382260:intron | 45.0% | |
| TGATTTCCTTGTTGGAGGGT+AGG | - | chr3_1:84733746-84733765 | None:intergenic | 45.0% | |
| TGCGGGTATATGTATGAACG+GGG | - | chr3_1:84733788-84733807 | None:intergenic | 45.0% | |
| ! | GAAGAAGACGAGAGTTGGTT+TGG | - | chr3_1:84734120-84734139 | None:intergenic | 45.0% |
| TGAAAAAGGTGGTCACGTGA+AGG | - | chr3_1:84734340-84734359 | None:intergenic | 45.0% | |
| CAGATATAACATGATCGGGC+TGG | - | chr3_1:84735237-84735256 | None:intergenic | 45.0% | |
| CAGCCCGATCATGTTATATC+TGG | + | chr3_1:84735235-84735254 | Msa0382260:CDS | 45.0% | |
| !!! | ACTTTTTAAAAATAAATAAA+TGG | - | chr3_1:84733835-84733854 | None:intergenic | 5.0% |
| !!! | TTTTTTTATATTTTTTTCAA+CGG | - | chr3_1:84734555-84734574 | None:intergenic | 5.0% |
| TCATCTTGCTCCCACCTTTG+TGG | - | chr3_1:84732425-84732444 | None:intergenic | 50.0% | |
| AACCTGATTCCCGAGAGATG+CGG | - | chr3_1:84733460-84733479 | None:intergenic | 50.0% | |
| ! | AGGTTGTTGCTGGTTGTGGG+AGG | + | chr3_1:84732379-84732398 | Msa0382260:CDS | 55.0% |
| ! | TTGTTGCTGGTTGTGGGAGG+TGG | + | chr3_1:84732382-84732401 | Msa0382260:CDS | 55.0% |
| CTTTGTGGTCGTCTCCCTTC+AGG | - | chr3_1:84732410-84732429 | None:intergenic | 55.0% | |
| CTGAAGGGAGACGACCACAA+AGG | + | chr3_1:84732408-84732427 | Msa0382260:CDS | 55.0% | |
| AAGGGAGACGACCACAAAGG+TGG | + | chr3_1:84732411-84732430 | Msa0382260:intron | 55.0% | |
| AGGGAGACGACCACAAAGGT+GGG | + | chr3_1:84732412-84732431 | Msa0382260:intron | 55.0% | |
| ! | TGGATCGACTCCGCATCTCT+CGG | + | chr3_1:84733447-84733466 | Msa0382260:CDS | 55.0% |
| ! | CAGTGGGCATGGTTCTGTTC+AGG | + | chr3_1:84734399-84734418 | Msa0382260:intron | 55.0% |
| TTGTGGGAGGTGGAGCCTGA+AGG | + | chr3_1:84732392-84732411 | Msa0382260:CDS | 60.0% | |
| TGTGGGAGGTGGAGCCTGAA+GGG | + | chr3_1:84732393-84732412 | Msa0382260:CDS | 60.0% | |
| ! | GGATCGACTCCGCATCTCTC+GGG | + | chr3_1:84733448-84733467 | Msa0382260:CDS | 60.0% |
| CTCCGCATCTCTCGGGAATC+AGG | + | chr3_1:84733455-84733474 | Msa0382260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 84732199 | 84735333 | 84732199 | ID=Msa0382260;Name=Msa0382260 |
| chr3_1 | mRNA | 84732199 | 84735333 | 84732199 | ID=Msa0382260-mRNA-1;Parent=Msa0382260;Name=Msa0382260-mRNA-1;_AED=0.41;_eAED=0.74;_QI=0|0|0.16|0.83|0.2|0.16|6|0|170 |
| chr3_1 | exon | 84732199 | 84732202 | 84732199 | ID=Msa0382260-mRNA-1:exon:22090;Parent=Msa0382260-mRNA-1 |
| chr3_1 | exon | 84732234 | 84732270 | 84732234 | ID=Msa0382260-mRNA-1:exon:22091;Parent=Msa0382260-mRNA-1 |
| chr3_1 | exon | 84732290 | 84732429 | 84732290 | ID=Msa0382260-mRNA-1:exon:22092;Parent=Msa0382260-mRNA-1 |
| chr3_1 | exon | 84732800 | 84732952 | 84732800 | ID=Msa0382260-mRNA-1:exon:22093;Parent=Msa0382260-mRNA-1 |
| chr3_1 | exon | 84733412 | 84733476 | 84733412 | ID=Msa0382260-mRNA-1:exon:22094;Parent=Msa0382260-mRNA-1 |
| chr3_1 | exon | 84735220 | 84735333 | 84735220 | ID=Msa0382260-mRNA-1:exon:22095;Parent=Msa0382260-mRNA-1 |
| chr3_1 | CDS | 84732199 | 84732202 | 84732199 | ID=Msa0382260-mRNA-1:cds;Parent=Msa0382260-mRNA-1 |
| chr3_1 | CDS | 84732234 | 84732270 | 84732234 | ID=Msa0382260-mRNA-1:cds;Parent=Msa0382260-mRNA-1 |
| chr3_1 | CDS | 84732290 | 84732429 | 84732290 | ID=Msa0382260-mRNA-1:cds;Parent=Msa0382260-mRNA-1 |
| chr3_1 | CDS | 84732800 | 84732952 | 84732800 | ID=Msa0382260-mRNA-1:cds;Parent=Msa0382260-mRNA-1 |
| chr3_1 | CDS | 84733412 | 84733476 | 84733412 | ID=Msa0382260-mRNA-1:cds;Parent=Msa0382260-mRNA-1 |
| chr3_1 | CDS | 84735220 | 84735333 | 84735220 | ID=Msa0382260-mRNA-1:cds;Parent=Msa0382260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
