AlfalfaGEDB | MS.gene005698

M. sativa cultivar XinJiangDaYe / MS.gene005698

KEGG: K04077
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005737 GO:0006457 GO:0008144 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042026 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:0110165 GO:1901265 GO:1901363
PFAM: PF00118.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005698.t1	XP_003591643.1	99.5	574	3	0	1	574	1	574	2.8e-309	1070.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005698.t1	Q05046	92.3	575	43	1	1	574	1	575	1.3e-291	1003.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005698.t1	Q1RSH3	99.5	574	3	0	1	574	1	574	2.1e-309	1070.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene005698	MS.gene40328	PPI
MS.gene005698	MS.gene73119	PPI
MS.gene005698	MS.gene24508	PPI
MS.gene005698	MS.gene00537	PPI
MS.gene005698	MS.gene00538	PPI
MS.gene005698	MS.gene006906	PPI
MS.gene005698	MS.gene031197	PPI
MS.gene005698	MS.gene75319	PPI
MS.gene005698	MS.gene053971	PPI
MS.gene005698	MS.gene75317	PPI

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005698.t1	MTR_1g090140	99.477	574	3	0	1	574	1	574	0.0	1147
MS.gene005698.t1	MTR_1g090130	95.018	562	28	0	1	562	1	562	0.0	1080
MS.gene005698.t1	MTR_8g017080	70.833	576	166	2	1	574	1	576	0.0	803
MS.gene005698.t1	MTR_1g017390	47.664	535	274	4	34	564	47	579	2.34e-167	488
MS.gene005698.t1	MTR_1g017380	47.477	535	275	4	34	564	47	579	6.85e-167	487
MS.gene005698.t1	MTR_4g057970	45.537	549	287	5	19	558	28	573	1.59e-158	466
MS.gene005698.t1	MTR_4g084130	40.850	541	313	6	33	569	40	577	9.28e-136	407
MS.gene005698.t1	MTR_4g084130	39.700	466	275	5	108	569	2	465	1.45e-110	338
MS.gene005698.t1	MTR_0991s0010	50.758	132	63	1	34	163	47	178	2.13e-34	129
MS.gene005698.t1	MTR_3g090510	90.164	61	6	0	117	177	100	160	4.98e-27	113

Showing 1 to 10 of 14 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene005698.t1	AT3G23990	90.231	563	54	1	1	563	1	562	0.0	1027
MS.gene005698.t1	AT2G33210	86.879	564	74	0	1	564	1	564	0.0	998
MS.gene005698.t1	AT2G33210	86.170	564	73	1	1	564	1	559	0.0	983
MS.gene005698.t1	AT3G13860	72.826	552	147	2	22	572	21	570	0.0	810
MS.gene005698.t1	AT5G56500	47.731	551	283	3	28	574	46	595	7.31e-172	500
MS.gene005698.t1	AT5G56500	47.731	551	283	3	28	574	46	595	7.31e-172	500
MS.gene005698.t1	AT3G13470	46.984	547	282	5	33	574	51	594	5.56e-165	483
MS.gene005698.t1	AT1G55490	46.801	547	283	5	33	574	55	598	2.73e-164	481
MS.gene005698.t1	AT1G55490	46.801	547	283	5	33	574	55	598	2.73e-164	481
MS.gene005698.t1	AT1G55490	46.801	547	283	5	33	574	55	598	2.73e-164	481

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Find 0 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATTCATCTACAGATTAGGT+CGG	-	10444:22472-22491	MS.gene005698:intron	30.0%
ACTTGATTTATGAAGATTGG+AGG	-	10444:22664-22683	MS.gene005698:intron	30.0%
AGACAAGGAAAAAGAAAACA+AGG	+	10444:23270-23289	None:intergenic	30.0%
ATATCAGAATACGCTAACAA+TGG	+	10444:22401-22420	None:intergenic	30.0%
ATCACAAAGCATACAAAAGT+AGG	+	10444:19382-19401	None:intergenic	30.0%
CAGATTAAACTCTATATTGC+AGG	+	10444:23050-23069	None:intergenic	30.0%
CATTTATCAGAAATGTTTGG+AGG	+	10444:22826-22845	None:intergenic	30.0%
GAATGTTGTACTTTATATGC+AGG	-	10444:23518-23537	MS.gene005698:intron	30.0%
GACAACGATACAGATAAATA+TGG	+	10444:21439-21458	None:intergenic	30.0%
GGAAAAATTACAGGAAAGAT+TGG	-	10444:22526-22545	MS.gene005698:intron	30.0%

Showing 1 to 10 of 290 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
10444	gene	19140	23679	19140	ID=MS.gene005698
10444	mRNA	19140	23679	19140	ID=MS.gene005698.t1;Parent=MS.gene005698
10444	exon	23642	23679	23642	ID=MS.gene005698.t1.exon1;Parent=MS.gene005698.t1
10444	CDS	23642	23679	23642	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	23335	23359	23335	ID=MS.gene005698.t1.exon2;Parent=MS.gene005698.t1
10444	CDS	23335	23359	23335	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	23098	23229	23098	ID=MS.gene005698.t1.exon3;Parent=MS.gene005698.t1
10444	CDS	23098	23229	23098	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	22686	22845	22686	ID=MS.gene005698.t1.exon4;Parent=MS.gene005698.t1
10444	CDS	22686	22845	22686	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	22151	22326	22151	ID=MS.gene005698.t1.exon5;Parent=MS.gene005698.t1
10444	CDS	22151	22326	22151	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	21955	22050	21955	ID=MS.gene005698.t1.exon6;Parent=MS.gene005698.t1
10444	CDS	21955	22050	21955	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	21667	21771	21667	ID=MS.gene005698.t1.exon7;Parent=MS.gene005698.t1
10444	CDS	21667	21771	21667	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	21174	21260	21174	ID=MS.gene005698.t1.exon8;Parent=MS.gene005698.t1
10444	CDS	21174	21260	21174	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	20998	21087	20998	ID=MS.gene005698.t1.exon9;Parent=MS.gene005698.t1
10444	CDS	20998	21087	20998	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	20815	20895	20815	ID=MS.gene005698.t1.exon10;Parent=MS.gene005698.t1
10444	CDS	20815	20895	20815	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	20658	20726	20658	ID=MS.gene005698.t1.exon11;Parent=MS.gene005698.t1
10444	CDS	20658	20726	20658	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	20455	20532	20455	ID=MS.gene005698.t1.exon12;Parent=MS.gene005698.t1
10444	CDS	20455	20532	20455	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	20239	20334	20239	ID=MS.gene005698.t1.exon13;Parent=MS.gene005698.t1
10444	CDS	20239	20334	20239	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	20041	20140	20041	ID=MS.gene005698.t1.exon14;Parent=MS.gene005698.t1
10444	CDS	20041	20140	20041	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	19855	19958	19855	ID=MS.gene005698.t1.exon15;Parent=MS.gene005698.t1
10444	CDS	19855	19958	19855	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	19562	19667	19562	ID=MS.gene005698.t1.exon16;Parent=MS.gene005698.t1
10444	CDS	19562	19667	19562	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	19331	19409	19331	ID=MS.gene005698.t1.exon17;Parent=MS.gene005698.t1
10444	CDS	19331	19409	19331	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1
10444	exon	19140	19242	19140	ID=MS.gene005698.t1.exon18;Parent=MS.gene005698.t1
10444	CDS	19140	19242	19140	ID=cds.MS.gene005698.t1;Parent=MS.gene005698.t1

Gene Sequence

>MS.gene005698

ATGTACCGTTTTGCTTCATCACTTGCCTCCAAAGCTCGGTAAGTCATCAATGGCAGTGTCCTTTTTTTTGTTTCAATTATCCTTTTACACACTTCAGATGGCTTCAATTTTTAATCTTTTTTGAAATTATTCATCTGGGTCGTTGTTAAAATGATTGATAATGGATAAAAAAATTAACTTTTTCAATAATTGAGCATTGTGCATTGAGATGGATCTAGAACCATGTTGATTCGTGATTACCTACTTTTGTATGCTTTGTGATTGGATATCCAATTATATTGAATGATTCTAAATGTAAATTTTTGTGCTTTTGGATGCAGAATTGCTAGGAGCAACGCTAATCAGGTGAATCACTGTTTGATTACATAGAACATTTTTTTGTTGAATAAGTTTTGAGATTTGTAACTCATTTAATCCTTTATATCTGTTTTTTTAATTTGTGTTGCATAGATTGGAAGTAGGGTGGCATGGAGCAGAAATTATGCTGCCAAAGAGATCAAATTTGGCGTGGAGGCTCGTGCTTTGATGCTTAAGGGTGTTGAAGAACTTGCTGAGGCAGTTAAAGTAACCATGGGTCCTAAGGTAACTAAGCAAACCTTCCGTTTCCTTCACATATTCGCAGTGGAATGATGTCTTTGGTAAATGTAGTAGAATAAAAGGAGATATATAATGCTGATGCTGGATTTTAATTCATTCATCACACACTTATTCAATCATATTTCAGAGGGAAGAACACTAGCTTTGGTTGTAGCCTGTAGGACTGGAAGATATTAAATCATCAATTATAGTCCCATTATTAATTGTTGTTGATGATTACATTTCTCCTGTTTTTAGGGCCGTAACGTGGTGATTGAGCAAAGCTTTGGTGCCCCTAAAGTGACAAAAGATGGAGTCACTGTGGCTAAGAGCATTGAATTCAAGGATAAAGTCAAGAATATCGGTGCCAGTCTAGTAAAGCAGGTTGCAAATGCTACCAATGATGTGGCTGGTGATGGTAAGCTGTTTTATCCATGGTTGATTATATTTTTGAAATTTAAATTTTCACAGTTGATTCGGTTTTATTCCTAGGACGTGGTTGATTCGGTTTTATTCCAAGGACTTTTGGTATATATTTTAGAGATTTGTTTTATTCCTAGGATGTGGTGTATATATTAGAAATTAAATCTAAACACGGTCACATTTTACATGCCGATATTGTGCACTTTTGGTATATATTTTAGAGATTTGTTTTATTCCTAGGATGTGGTGTATATATTAGAAATTAAATCTAAACACGGTCACATTTTACATGCCGATATTGTGCATTTTGTCTCGTTGTTGTGACCGACTAATGAATGGTATAAATTTTGGCAGGAACCACTTGTGCTACAGTTCTTACCCGGGCAATATTTACAGAAGGATGCAAATCAGTTGCAGCTGGAATGAATGCAATGGACCTGAGGCGAGGTATAAATATGGCTGTTGATTCTGTTGTGACAAACTTGAAAAGCAGAGCACGGATGATCAGCACTTCTGAAGAAATTGCTCAGGTTTGTGTATCAAATTTTTAGAGCTAATAGGCATATTAGCCACAAGGACTGCAGGACAGTAGTTTATCTGAGTTTTGTATTTTTAATTTTGCAATGTTAGGTTGGCACAATATCTGCTAATGGGGATAGAGAAATTGGTGAGTTAATTGCAAAAGCCATGGAGAAAGTTGGCAAAGAAGGTGTAATCACAATTGCTGTAAGTTTAAATATGCTCATCTTGCAAGAATTATCATTAATCTTGGTTATATGTGTTTTTTTGACTGGGAACATGCTGTTATTCATGCAATGTTTTTATTGTGCCTTTTCTTTTTTTCCCACTTATTGTCATCTTGCCGTGCACTTTGTGGTATGCTGGGTTATAACTTTTGAGCTGTTTCAGGATGGCAAGACATTGCAAAATGAGTTGGAAGTTGTTGAAGGAATGAAGCTTGACCGAGGCTACATTTCTCCGTATTTCATAACAAACCAGAAGAACCAGAAATGTGTATGTTCTTAACTGATGCCTCTACATAGCAGCATTAGAAATATCTGTACATAATACTCTCTAACAAGCTTGTTAGCACCTAGTTATCTATCAACGATAGTAGTGGAGCATCATGTTGCATCTCAATTTTGGCATTCTCCAGTCATTGTGTTTTGCTCTTTGGTTGCAATTGTATACCTATCGTAGTTGCGACTTTTGTTTTGCCCCTTTAATTACATTATGATTACAAACTTTTACGACATTATAAATTACGAAATGCATAGCTAAAATTTCAATACTGTTGCCATATTTATCTGTATCGTTGTCAGGTGTCCCTGTCGGTGTCCTTGCTCCATACATTGTCATGACTCATGAGTCTGTATGTTTGTTAATCATAACTAACCATGACATCTATTTGTTACCACAGGAACTCGAGGATCCCCTCATTATAATCCACGAGAAGAAAATCTCAAATATAAATTCTATAGTTAAAGTATTAGAGTTAGCTTTGAAGGTGAGTAGTGCTATTTGCATCACTTTGCATTGAATTGTAAAATATTGATATTGATATTGTATTAACTTAAACTTTGTCATCAACAGAAACAAAGACCTTTATTGATTGTTGCTGAGGATGTGGAAAGTGATGCCCTTGCAACTCTTATTCTAAATAAGCTTCGTGCTGGAATTAAGGTTTGTTTTTCCTATCTGTAGGTTTACTTTTTTATTCTTAGATTCTTAAAATCTATGATTTTTATTTTTTCTTATTTGATTTGTTTTTTTCTCATTACTTAGGTATGCGCGATCAAAGCCCCTGGTTTTGGGGAAAACAGGAAATCTGGTCTCCAGGATCTCGCTGTTCTTACAGGAGGTCAAGTAAGTTATCTTTTTTACAAGAAAATATTAATATATTTTAGTCACATCTTATAAACATGTATGTGATGCGTTTTATATATGCATACAGCTTATCACCGAAGAGCTTGGCATGAATCTTGAAAAAGTTGATCTTGAAATGTTCGGTTCTTGCAAAAAGGTACTAGTGTAGCTTAATTGATGTAGCATTTTAATAATGCACAGTTGAATTTTGGTAGTCCACAATGATTGCTCGGTTTTGGTAAAAGATGCAAATCTACTGAACTAATTTTCTTAATGTTTTAGATTACAATTTCCAAAGATGACACTGTCATTCTTGATGGAGCTGGTGATAAGAAATCAATTGAGGAAAGATGTGAGCAGGTTTGTTCAAATCTCCTATTAGATTTCATTTTACCATTGTTAGCGTATTCTGATATCATATAGAGATATGTTTGATTGTTCTTTGATAACTTGTTTTCTGATGTGAAAATTCATCTACAGATTAGGTCGGCAATCGAAAATAGCACTTCAGATTATGACAAGGAAAAATTACAGGAAAGATTGGCCAAGCTTTCTGGAGGAGTTGCAGTGCTTAAGGTATGCTTAATTATGTTGACCTTGCTTGCTGATGCTTTTTATTACCTATTAACATTCCAAGTTTTTCATAACTAACACCTGAAACTTGATTTATGAAGATTGGAGGAGCCAGTGAGGCTGAAGTTGGTGAGAAAAAGGATAGAGTAACAGATGCCTTAAATGCAACCAAGGCAGCTGTAGAGGAGGGCATAGTACCTGGTAAATTATTAGCATGATATTTGTATGCTTAATTAATTCTATGTCCTCCAAACATTTCTGATAAATGTATGTTTTTGCACAGGTGGTGGTGTTGCTCTTCTTTATGCATCAAATGAGTTAAGTAAGCTTCCAACCGCCAATTTTGATCAAAAGATAGGTGTCCAAATTATCCAAAACGCTTTAAAGGTGTGTTTTGTGTTCTGACTGATTTTTTATTTAGACGTCCATATTCCATTCTCCTTCCTCGTCAATTCCTTTCAGGCTTAATCCTGCAATATAGAGTTTAATCTGTCTTTTAGACAGTATGGTTTTAACTTCAATTTCAATCTCAGTTTCTCACTCTTTTACTACTTGTTTTGACAAAAAAATGCAGACACCTGTGCATACAATTGCATCAAATGCTGGAGTAGAGGGTGCTGTTGTTGTTGGTAAACTTTTGGAACAGGATAATCCTGATCTTGGTTACGATGCCGCCAAAGGTCAGTGTTCCTTGTTTTCTTTTTCCTTGTCTTGTTTAAGGAGTTTCTTTCGTTTACATCATCATCATCATCATCATCATCATCATCATCATCATCATCATTATTATTATTGATTCGTTTGTCAACTATTTTTCTTGCTGGTTTGTAATTAGGTGAATATGTTGATATGGTTAAATCTGGAATAATTGATCCATTGAAGGTGATTAGGACCGCCTTGGTTGACGCAGCCAGGTAGGATATAAAATTTTTGCGTTGGATATGAATGTTGTACTTTATATGCAGGTAGCCTGACTAACTTGCTGCTTTTTTTTTTCTGCAGTGTGTCGTCTTTGATGACAACAACTGAAGCTGTTGTTTCTGAACTACCAAAAGAAGATAAAGATGCTCCTGCCATGCCTGGTATGGGTGGTATGGACTATTAG

Protein sequence

>MS.gene005698.t1

MYRFASSLASKARIARSNANQIGSRVAWSRNYAAKEIKFGVEARALMLKGVEELAEAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGINMAVDSVVTNLKSRARMISTSEEIAQVGTISANGDREIGELIAKAMEKVGKEGVITIADGKTLQNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPLIIIHEKKISNINSIVKVLELALKKQRPLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKSGLQDLAVLTGGQLITEELGMNLEKVDLEMFGSCKKITISKDDTVILDGAGDKKSIEERCEQIRSAIENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASNELSKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAVVSELPKEDKDAPAMPGMGGMDY