Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011139.t1 | XP_024629011.1 | 100 | 480 | 0 | 0 | 45 | 524 | 1 | 480 | 7.40E-277 | 962.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011139.t1 | Q949Y0 | 76.4 | 483 | 110 | 2 | 45 | 524 | 1 | 482 | 4.5e-214 | 745.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011139.t1 | A0A396GGA4 | 100.0 | 480 | 0 | 0 | 45 | 524 | 1 | 480 | 5.4e-277 | 962.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene26985 | MS.gene011139 | PPI |
MS.gene81765 | MS.gene011139 | PPI |
MS.gene90698 | MS.gene011139 | PPI |
MS.gene29256 | MS.gene011139 | PPI |
MS.gene044013 | MS.gene011139 | PPI |
MS.gene062770 | MS.gene011139 | PPI |
MS.gene24252 | MS.gene011139 | PPI |
MS.gene007189 | MS.gene011139 | PPI |
MS.gene67099 | MS.gene011139 | PPI |
MS.gene057206 | MS.gene011139 | PPI |
MS.gene004328 | MS.gene011139 | PPI |
MS.gene24375 | MS.gene011139 | PPI |
MS.gene06859 | MS.gene011139 | PPI |
MS.gene049599 | MS.gene011139 | PPI |
MS.gene05119 | MS.gene011139 | PPI |
MS.gene050290 | MS.gene011139 | PPI |
MS.gene53875 | MS.gene011139 | PPI |
MS.gene24255 | MS.gene011139 | PPI |
MS.gene013534 | MS.gene011139 | PPI |
MS.gene034846 | MS.gene011139 | PPI |
MS.gene008431 | MS.gene011139 | PPI |
MS.gene27247 | MS.gene011139 | PPI |
MS.gene24706 | MS.gene011139 | PPI |
MS.gene011139 | MS.gene27289 | PPI |
MS.gene056896 | MS.gene011139 | PPI |
MS.gene24253 | MS.gene011139 | PPI |
MS.gene002648 | MS.gene011139 | PPI |
MS.gene06645 | MS.gene011139 | PPI |
MS.gene050252 | MS.gene011139 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011139.t1 | MTR_8g015660 | 100.000 | 477 | 0 | 0 | 48 | 524 | 78 | 554 | 0.0 | 999 |
MS.gene011139.t1 | MTR_3g100480 | 27.572 | 243 | 152 | 8 | 149 | 379 | 585 | 815 | 7.89e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene011139.t1 | AT1G51710 | 76.398 | 483 | 110 | 2 | 45 | 524 | 1 | 482 | 0.0 | 750 |
MS.gene011139.t1 | AT3G21280 | 75.676 | 481 | 114 | 3 | 44 | 524 | 55 | 532 | 0.0 | 744 |
MS.gene011139.t1 | AT3G21280 | 75.417 | 480 | 115 | 3 | 45 | 524 | 1 | 477 | 0.0 | 741 |
MS.gene011139.t1 | AT1G51710 | 76.037 | 434 | 100 | 2 | 94 | 524 | 11 | 443 | 0.0 | 671 |
Find 109 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCTTCCACCATGATTAA+TGG | 0.190178 | 8.3:-73284730 | MS.gene011139:intron |
ATCAAAGCCGACTTCAATTC+TGG | 0.197702 | 8.3:+73282428 | None:intergenic |
CTGTGGCACCTATGCAATTT+TGG | 0.236161 | 8.3:-73282207 | MS.gene011139:CDS |
GGAAAAGGCTTCTGCTGCTT+TGG | 0.253240 | 8.3:-73278973 | MS.gene011139:CDS |
CTCGCAAAATCTTAGCCTTT+TGG | 0.261860 | 8.3:+73277813 | None:intergenic |
TCATCTTGAACTCTAGGTTT+TGG | 0.265590 | 8.3:+73276005 | None:intergenic |
TTCAGTTTGTCCGTTTCTTT+TGG | 0.281449 | 8.3:-73277850 | MS.gene011139:CDS |
GTTATCAGTTACTCACATTC+AGG | 0.296836 | 8.3:-73282316 | MS.gene011139:intron |
AGCTTTCTTCATTGCTCTCT+TGG | 0.309856 | 8.3:+73279518 | None:intergenic |
AGTTGAGAAGAGGTTGTTCT+TGG | 0.329025 | 8.3:+73284789 | None:intergenic |
GAAAAGGCTTCTGCTGCTTT+GGG | 0.331458 | 8.3:-73278972 | MS.gene011139:CDS |
TCCTGAAAGACAAAAGATTA+TGG | 0.342483 | 8.3:-73283723 | MS.gene011139:CDS |
GCAGCTACTTGTTCTTCTTC+AGG | 0.354152 | 8.3:+73283319 | None:intergenic |
ATCTATAAGTGCGTGTGGTT+TGG | 0.354701 | 8.3:-73284842 | MS.gene011139:CDS |
ATTCAGGACATTATGTTGGC+TGG | 0.356023 | 8.3:-73276157 | MS.gene011139:CDS |
AAACCACACGCACTTATAGA+TGG | 0.358049 | 8.3:+73284844 | None:intergenic |
ATCATCTGTGTTTAGGTGAT+TGG | 0.361081 | 8.3:-73275731 | MS.gene011139:intron |
GATGACATCACTAGACTATC+TGG | 0.373755 | 8.3:-73275987 | MS.gene011139:CDS |
AACAAAGTGGATACCTTTCT+AGG | 0.395937 | 8.3:+73277601 | None:intergenic |
CAATTTGGCCAGCTGCATAA+TGG | 0.409917 | 8.3:-73281109 | MS.gene011139:CDS |
AATGACTGGGGTTTATGATT+TGG | 0.412670 | 8.3:-73276213 | MS.gene011139:CDS |
GATGCTGATTGGGCAAAGTT+AGG | 0.423425 | 8.3:-73283525 | MS.gene011139:CDS |
TTAATTTAGGGGTCATCAAA+TGG | 0.428623 | 8.3:-73276385 | MS.gene011139:intron |
GGGTCAAAAGCTAATGATGA+TGG | 0.432476 | 8.3:-73283401 | MS.gene011139:CDS |
TAATGGAGTGTTCATGCAAC+AGG | 0.437555 | 8.3:-73281092 | MS.gene011139:intron |
GTTACTTGCTGACAGGGAAA+TGG | 0.440705 | 8.3:-73276049 | MS.gene011139:intron |
TTTAAAATCAGAGTTGGAAA+AGG | 0.450330 | 8.3:-73278988 | MS.gene011139:CDS |
GTGATGTCATCTTGAACTCT+AGG | 0.451199 | 8.3:+73275999 | None:intergenic |
AAGAGAATAATAACCTCGGC+AGG | 0.452691 | 8.3:+73278910 | None:intergenic |
CTCTAAGATCCCCTGGATCT+AGG | 0.452923 | 8.3:-73280935 | MS.gene011139:intron |
CAATGCAGGATGATGCTGAT+TGG | 0.460308 | 8.3:-73283536 | MS.gene011139:intron |
TCTGCATTTGCCAGGTATTG+AGG | 0.461481 | 8.3:-73281144 | MS.gene011139:intron |
CTCCAGTCAGATCAAACAAT+TGG | 0.463837 | 8.3:+73283750 | None:intergenic |
GGTTGTTCTTGGCTTGAAGA+AGG | 0.464254 | 8.3:+73284800 | None:intergenic |
GAAGAAAGTTACCTAGATCC+AGG | 0.470982 | 8.3:+73280924 | None:intergenic |
AAGGGTAGGAGTGCTGATTC+AGG | 0.475040 | 8.3:-73276173 | MS.gene011139:CDS |
GGAGCCATCTGTTGCTCCAA+TGG | 0.476196 | 8.3:-73276356 | MS.gene011139:CDS |
ATCAGCACTCCTACCCTTGT+GGG | 0.484437 | 8.3:+73276178 | None:intergenic |
GCAGGGTTTAAAATCAGAGT+TGG | 0.484857 | 8.3:-73278994 | MS.gene011139:intron |
ATTCCCTCTTCCAAAAGAAA+CGG | 0.501115 | 8.3:+73277840 | None:intergenic |
GTGTTTAGGTGATTGGCATA+TGG | 0.504677 | 8.3:-73275724 | MS.gene011139:intron |
TCAAAGCCGACTTCAATTCT+GGG | 0.506445 | 8.3:+73282429 | None:intergenic |
TCACAATCTCTAAGATCCCC+TGG | 0.506632 | 8.3:-73280942 | MS.gene011139:CDS |
TTTCTGCAGTGAGTGTTAAG+TGG | 0.507754 | 8.3:-73283835 | MS.gene011139:intron |
AGAAATCGAACCATTAATCA+TGG | 0.509118 | 8.3:+73284720 | None:intergenic |
GTTGTTCTTGGCTTGAAGAA+GGG | 0.509936 | 8.3:+73284801 | None:intergenic |
GAAATTAGAAGCTCCTAGAA+AGG | 0.510977 | 8.3:-73277614 | MS.gene011139:intron |
AATGCAGGATGATGCTGATT+GGG | 0.515628 | 8.3:-73283535 | MS.gene011139:intron |
TTGTTCTTGGCTTGAAGAAG+GGG | 0.518818 | 8.3:+73284802 | None:intergenic |
TTCAGGACATTATGTTGGCT+GGG | 0.518824 | 8.3:-73276156 | MS.gene011139:CDS |
GAGTGAGAAAAGTTGAGAAG+AGG | 0.520392 | 8.3:+73284779 | None:intergenic |
TGCCAATTGTTTGATCTGAC+TGG | 0.522079 | 8.3:-73283752 | MS.gene011139:CDS |
AATCAGCACTCCTACCCTTG+TGG | 0.523852 | 8.3:+73276177 | None:intergenic |
GGTTTACCTCCTGCGATATG+TGG | 0.524877 | 8.3:+73279464 | None:intergenic |
AACAGGATGCTGAAGAATGT+TGG | 0.526386 | 8.3:-73280986 | MS.gene011139:intron |
TTGGCATAGAACTTAATAGC+AGG | 0.531618 | 8.3:-73280590 | MS.gene011139:intron |
GTGGGACAGGGACATACTGC+TGG | 0.532272 | 8.3:-73282512 | MS.gene011139:intron |
AAGACAAAAGATTATGGTCA+AGG | 0.535017 | 8.3:-73283717 | MS.gene011139:CDS |
AGTAGATTATCCTCTGGAGT+TGG | 0.535111 | 8.3:-73277671 | MS.gene011139:CDS |
TGATAAAAGTGTCAAGGCTG+TGG | 0.537101 | 8.3:-73282224 | MS.gene011139:CDS |
ACTTCAATTCTGGGACAGAA+TGG | 0.537272 | 8.3:+73282438 | None:intergenic |
GAAGAGGGAATCAAACCAAA+AGG | 0.537832 | 8.3:-73277828 | MS.gene011139:CDS |
TGAAAATACTGATGCTGTGA+AGG | 0.539297 | 8.3:-73280619 | MS.gene011139:CDS |
TGAACACTCCATTATGCAGC+TGG | 0.540413 | 8.3:+73281101 | None:intergenic |
AGTGAGTGTTAAGTGGCAAA+AGG | 0.543381 | 8.3:-73283828 | MS.gene011139:CDS |
TCCTCCATTGGAGCAACAGA+TGG | 0.547369 | 8.3:+73276352 | None:intergenic |
ATTATGAAATCTCCAGAGAA+GGG | 0.549279 | 8.3:-73283364 | MS.gene011139:CDS |
TTATGCAGCTGGCCAAATTG+AGG | 0.549295 | 8.3:+73281112 | None:intergenic |
TAGGGGTCATCAAATGGAGG+AGG | 0.557464 | 8.3:-73276379 | MS.gene011139:CDS |
ACTTAAATGCCACATATCGC+AGG | 0.558324 | 8.3:-73279473 | MS.gene011139:CDS |
AAGAAAGTTACCTAGATCCA+GGG | 0.559913 | 8.3:+73280925 | None:intergenic |
AATTATGAAATCTCCAGAGA+AGG | 0.574663 | 8.3:-73283365 | MS.gene011139:CDS |
GGCATATATAATCATGTACA+AGG | 0.580839 | 8.3:-73275703 | MS.gene011139:CDS |
AACCACACGCACTTATAGAT+GGG | 0.581923 | 8.3:+73284845 | None:intergenic |
TCAGAAAGTAGATTATCCTC+TGG | 0.583259 | 8.3:-73277677 | MS.gene011139:intron |
GAATAAGTCACGGGTTGCAA+CGG | 0.585557 | 8.3:+73282255 | None:intergenic |
TGAGAAAAGCTCTGTTCCCA+AGG | 0.585888 | 8.3:-73277438 | MS.gene011139:CDS |
TATACCATCCAAAATTGCAT+AGG | 0.592018 | 8.3:+73282199 | None:intergenic |
AGACAAAAGATTATGGTCAA+GGG | 0.594358 | 8.3:-73283716 | MS.gene011139:CDS |
GCTGATTCAGGACATTATGT+TGG | 0.595896 | 8.3:-73276161 | MS.gene011139:CDS |
CAAGCTCGCTGAATAAGTCA+CGG | 0.595928 | 8.3:+73282245 | None:intergenic |
GGCTGGGTCAAGCAAGAGAA+CGG | 0.597807 | 8.3:-73276140 | MS.gene011139:intron |
CGCGCATCAATGCCCTGCCG+AGG | 0.599427 | 8.3:-73278923 | MS.gene011139:intron |
GGTCAAAAGCTAATGATGAT+GGG | 0.606310 | 8.3:-73283400 | MS.gene011139:CDS |
ATCACTAGACTATCTGGAGG+AGG | 0.606479 | 8.3:-73275981 | MS.gene011139:intron |
TTCTGTCCCAGAATTGAAGT+CGG | 0.608208 | 8.3:-73282435 | MS.gene011139:CDS |
CTGTATTGACCCACAAGGGT+AGG | 0.611955 | 8.3:-73276187 | MS.gene011139:CDS |
GCCATCTGTTGCTCCAATGG+AGG | 0.618123 | 8.3:-73276353 | MS.gene011139:CDS |
CGAGCTTGATAAAAGTGTCA+AGG | 0.622464 | 8.3:-73282230 | MS.gene011139:CDS |
AAGCTCGCTGAATAAGTCAC+GGG | 0.622507 | 8.3:+73282246 | None:intergenic |
GGCAAAGTTAGGAGTGAAAG+CGG | 0.624183 | 8.3:-73283514 | MS.gene011139:intron |
AGGGGTCATCAAATGGAGGA+GGG | 0.627869 | 8.3:-73276378 | MS.gene011139:CDS |
TCTGTTGCTCCAATGGAGGA+AGG | 0.637913 | 8.3:-73276349 | MS.gene011139:intron |
ATTTAGGGGTCATCAAATGG+AGG | 0.638714 | 8.3:-73276382 | MS.gene011139:intron |
AATCGAACCATTAATCATGG+TGG | 0.640991 | 8.3:+73284723 | None:intergenic |
GACCCATCTATAAGTGCGTG+TGG | 0.645197 | 8.3:-73284847 | MS.gene011139:CDS |
CAAAAGATTATGGTCAAGGG+TGG | 0.645610 | 8.3:-73283713 | MS.gene011139:CDS |
TCAATTCTGGGACAGAATGG+AGG | 0.654979 | 8.3:+73282441 | None:intergenic |
CAGTTTCTAAGAGATGAAGA+AGG | 0.657736 | 8.3:-73277485 | MS.gene011139:CDS |
AGAGAATAATAACCTCGGCA+GGG | 0.663030 | 8.3:+73278911 | None:intergenic |
GGTTGCTGTATTGACCCACA+AGG | 0.664211 | 8.3:-73276192 | MS.gene011139:CDS |
TCGTAAACATCCAACTCCAG+AGG | 0.671783 | 8.3:+73277661 | None:intergenic |
GGGGTCATCAAATGGAGGAG+GGG | 0.682211 | 8.3:-73276377 | MS.gene011139:CDS |
GAGGTAAACCATTTGCACGA+AGG | 0.687364 | 8.3:-73279451 | MS.gene011139:CDS |
AGAAAGTTACCTAGATCCAG+GGG | 0.703050 | 8.3:+73280926 | None:intergenic |
TAAATGCCACATATCGCAGG+AGG | 0.705771 | 8.3:-73279470 | MS.gene011139:CDS |
GACATCACTAGACTATCTGG+AGG | 0.706557 | 8.3:-73275984 | MS.gene011139:CDS |
GTTGCTGTATTGACCCACAA+GGG | 0.727289 | 8.3:-73276191 | MS.gene011139:CDS |
AAAAGAAACACAAATGACTG+GGG | 0.734411 | 8.3:-73276225 | MS.gene011139:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 73275683 | 73284872 | 73275683 | ID=MS.gene011139 |
chr8.3 | mRNA | 73275683 | 73284872 | 73275683 | ID=MS.gene011139.t1;Parent=MS.gene011139 |
chr8.3 | exon | 73284731 | 73284872 | 73284731 | ID=MS.gene011139.t1.exon1;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73284731 | 73284872 | 73284731 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73283703 | 73283848 | 73283703 | ID=MS.gene011139.t1.exon2;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73283703 | 73283848 | 73283703 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73283515 | 73283550 | 73283515 | ID=MS.gene011139.t1.exon3;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73283515 | 73283550 | 73283515 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73283315 | 73283422 | 73283315 | ID=MS.gene011139.t1.exon4;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73283315 | 73283422 | 73283315 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73282425 | 73282525 | 73282425 | ID=MS.gene011139.t1.exon5;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73282425 | 73282525 | 73282425 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73282204 | 73282330 | 73282204 | ID=MS.gene011139.t1.exon6;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73282204 | 73282330 | 73282204 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73281093 | 73281152 | 73281093 | ID=MS.gene011139.t1.exon7;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73281093 | 73281152 | 73281093 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73280936 | 73281003 | 73280936 | ID=MS.gene011139.t1.exon8;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73280936 | 73281003 | 73280936 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73280591 | 73280641 | 73280591 | ID=MS.gene011139.t1.exon9;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73280591 | 73280641 | 73280591 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73279441 | 73279549 | 73279441 | ID=MS.gene011139.t1.exon10;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73279441 | 73279549 | 73279441 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73278924 | 73279012 | 73278924 | ID=MS.gene011139.t1.exon11;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73278924 | 73279012 | 73278924 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73277814 | 73277883 | 73277814 | ID=MS.gene011139.t1.exon12;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73277814 | 73277883 | 73277814 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73277615 | 73277695 | 73277615 | ID=MS.gene011139.t1.exon13;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73277615 | 73277695 | 73277615 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73277409 | 73277504 | 73277409 | ID=MS.gene011139.t1.exon14;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73277409 | 73277504 | 73277409 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73276350 | 73276398 | 73276350 | ID=MS.gene011139.t1.exon15;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73276350 | 73276398 | 73276350 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73276141 | 73276251 | 73276141 | ID=MS.gene011139.t1.exon16;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73276141 | 73276251 | 73276141 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73275982 | 73276056 | 73275982 | ID=MS.gene011139.t1.exon17;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73275982 | 73276056 | 73275982 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
chr8.3 | exon | 73275683 | 73275738 | 73275683 | ID=MS.gene011139.t1.exon18;Parent=MS.gene011139.t1 |
chr8.3 | CDS | 73275683 | 73275738 | 73275683 | ID=cds.MS.gene011139.t1;Parent=MS.gene011139.t1 |
Gene Sequence |
Protein sequence |