AlfalfaGEDB | MS.gene29256

M. sativa cultivar XinJiangDaYe / MS.gene29256

KEGG: K02725
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004298 GO:0005575 GO:0005839 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0019773 GO:0019941 GO:0032991 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0051603 GO:0070003 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901575
PFAM: PF00227.29 PF10584.12

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29256.t1	XP_024637521.1	88.8	295	26	2	1	288	232	526	2.40E-112	415.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29256.t1	P34066	73.8	252	51	3	1	248	1	241	1.7e-98	360.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29256.t1	I3RZQ6	86.1	252	20	3	1	248	1	241	6.6e-112	413.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene29256	MS.gene89677	PPI
MS.gene29256	MS.gene066737	PPI
MS.gene29256	MS.gene040231	PPI
MS.gene20239	MS.gene29256	PPI
MS.gene29256	MS.gene068998	PPI
MS.gene29256	MS.gene071345	PPI
MS.gene29256	MS.gene84459	PPI
MS.gene29256	MS.gene039040	PPI
MS.gene29256	MS.gene55530	PPI
MS.gene29256	MS.gene99509	PPI
MS.gene29256	MS.gene057320	PPI
MS.gene29256	MS.gene71557	PPI
MS.gene67460	MS.gene29256	PPI
MS.gene29256	MS.gene072146	PPI
MS.gene29256	MS.gene035129	PPI
MS.gene29256	MS.gene011139	PPI
MS.gene29256	MS.gene74962	PPI
MS.gene29256	MS.gene68079	PPI
MS.gene29256	MS.gene27289	PPI
MS.gene29256	MS.gene89672	PPI
MS.gene29256	MS.gene80790	PPI
MS.gene29256	MS.gene57218	PPI
MS.gene29256	MS.gene017616	PPI
MS.gene29256	MS.gene074061	PPI
MS.gene29256	MS.gene029314	PPI
MS.gene29256	MS.gene36563	PPI
MS.gene29256	MS.gene70283	PPI
MS.gene29256	MS.gene32974	PPI
MS.gene29256	MS.gene28183	PPI
MS.gene29256	MS.gene70282	PPI
MS.gene28454	MS.gene29256	PPI
MS.gene29256	MS.gene030685	PPI
MS.gene29256	MS.gene26985	PPI
MS.gene29256	MS.gene21679	PPI
MS.gene29256	MS.gene36854	PPI
MS.gene29256	MS.gene24252	PPI
MS.gene29256	MS.gene20239	PPI
MS.gene29256	MS.gene76217	PPI
MS.gene29256	MS.gene29607	PPI
MS.gene29256	MS.gene87139	PPI
MS.gene29256	MS.gene017622	PPI
MS.gene29256	MS.gene27247	PPI
MS.gene29256	MS.gene045566	PPI
MS.gene29256	MS.gene037240	PPI
MS.gene29256	MS.gene56675	PPI
MS.gene29256	MS.gene006641	PPI
MS.gene29256	MS.gene64789	PPI
MS.gene29256	MS.gene64609	PPI
MS.gene29256	MS.gene21951	PPI
MS.gene24255	MS.gene29256	PPI
MS.gene29256	MS.gene58134	PPI
MS.gene29256	MS.gene46543	PPI
MS.gene29256	MS.gene77139	PPI
MS.gene29256	MS.gene28454	PPI
MS.gene29256	MS.gene92186	PPI
MS.gene29256	MS.gene074000	PPI
MS.gene29256	MS.gene52459	PPI
MS.gene29256	MS.gene030686	PPI
MS.gene29256	MS.gene065045	PPI
MS.gene29256	MS.gene69251	PPI
MS.gene29256	MS.gene24255	PPI
MS.gene29256	MS.gene48062	PPI
MS.gene29256	MS.gene90698	PPI
MS.gene29256	MS.gene015193	PPI
MS.gene29256	MS.gene012127	PPI
MS.gene29256	MS.gene63845	PPI
MS.gene29256	MS.gene041280	PPI
MS.gene29256	MS.gene57158	PPI
MS.gene29256	MS.gene071304	PPI
MS.gene29256	MS.gene066738	PPI
MS.gene29256	MS.gene070615	PPI
MS.gene29256	MS.gene29922	PPI
MS.gene29256	MS.gene024701	PPI
MS.gene29256	MS.gene58136	PPI
MS.gene29256	MS.gene44226	PPI
MS.gene29256	MS.gene031999	PPI
MS.gene58134	MS.gene29256	PPI
MS.gene29256	MS.gene015192	PPI
MS.gene29922	MS.gene29256	PPI
MS.gene29256	MS.gene24542	PPI
MS.gene29256	MS.gene57214	PPI
MS.gene29256	MS.gene043801	PPI
MS.gene29256	MS.gene012131	PPI
MS.gene29256	MS.gene59485	PPI
MS.gene29256	MS.gene071036	PPI
MS.gene29256	MS.gene24253	PPI
MS.gene29256	MS.gene051630	PPI
MS.gene29256	MS.gene015190	PPI
MS.gene29256	MS.gene80661	PPI
MS.gene29256	MS.gene47175	PPI
MS.gene008081	MS.gene29256	PPI
MS.gene29256	MS.gene74417	PPI
MS.gene29256	MS.gene22289	PPI
MS.gene29256	MS.gene046093	PPI
MS.gene29256	MS.gene44230	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29256.t1	MTR_4g012740	78.086	324	30	3	1	288	232	550	1.57e-161	461
MS.gene29256.t1	MTR_4g012740	56.566	99	35	3	1	91	1	99	2.49e-22	97.1
MS.gene29256.t1	MTR_4g012740	55.556	99	36	3	1	91	78	176	3.65e-22	96.3
MS.gene29256.t1	MTR_4g012740	55.556	99	36	3	1	91	155	253	3.65e-22	96.3
MS.gene29256.t1	MTR_1g022410	85.763	295	24	4	1	288	1	284	4.91e-160	447
MS.gene29256.t1	MTR_4g057090	70.205	292	50	5	1	288	83	341	3.59e-125	360
MS.gene29256.t1	MTR_3g113730	85.976	164	20	2	126	288	4	165	1.17e-96	281
MS.gene29256.t1	MTR_1g112250	37.113	194	102	4	1	185	3	185	4.75e-29	111
MS.gene29256.t1	MTR_0167s0060	31.780	236	141	7	1	230	1	222	1.18e-27	107
MS.gene29256.t1	MTR_7g070070	34.529	223	120	8	5	214	4	213	1.63e-26	104
MS.gene29256.t1	MTR_5g016590	33.766	231	127	8	5	222	4	221	4.84e-26	103
MS.gene29256.t1	MTR_8g464460	29.583	240	150	8	6	237	9	237	2.84e-23	95.9
MS.gene29256.t1	MTR_8g075320	31.390	223	129	8	5	217	3	211	6.07e-23	95.1
MS.gene29256.t1	MTR_2g016050	31.818	220	134	7	4	217	2	211	3.89e-22	92.8
MS.gene29256.t1	MTR_2g060830	28.750	240	152	8	6	237	9	237	4.95e-22	92.8
MS.gene29256.t1	MTR_6g024135	31.683	202	118	7	6	200	8	196	1.79e-20	88.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29256.t1	AT1G47250	69.178	292	71	5	1	288	1	277	2.59e-134	381
MS.gene29256.t1	AT5G42790	75.100	249	47	3	1	245	1	238	5.23e-134	380
MS.gene29256.t1	AT1G53850	31.048	248	146	5	1	239	3	234	1.24e-28	110
MS.gene29256.t1	AT1G53850	31.048	248	146	5	1	239	3	234	1.24e-28	110
MS.gene29256.t1	AT3G14290	31.727	249	143	6	1	239	3	234	1.29e-28	110
MS.gene29256.t1	AT3G22110	31.020	245	148	8	5	239	4	237	2.05e-26	104
MS.gene29256.t1	AT1G16470	31.780	236	141	8	1	230	1	222	2.42e-26	103
MS.gene29256.t1	AT1G16470	31.780	236	141	8	1	230	1	222	2.42e-26	103
MS.gene29256.t1	AT1G79210	31.356	236	142	8	1	230	1	222	8.90e-26	102
MS.gene29256.t1	AT1G79210	31.356	236	142	8	1	230	1	222	8.90e-26	102
MS.gene29256.t1	AT1G79210	31.356	236	142	8	1	230	1	222	8.90e-26	102
MS.gene29256.t1	AT5G66140	31.390	223	129	7	5	217	3	211	8.20e-23	94.7
MS.gene29256.t1	AT3G51260	30.493	223	131	7	5	217	3	211	4.33e-22	92.8
MS.gene29256.t1	AT3G51260	30.493	223	131	7	5	217	3	211	5.15e-22	92.4
MS.gene29256.t1	AT5G35590	29.167	240	151	8	6	237	9	237	9.88e-22	92.0
MS.gene29256.t1	AT2G05840	28.333	240	153	8	6	237	9	237	2.37e-20	88.2
MS.gene29256.t1	AT2G05840	29.187	209	131	6	6	207	9	207	6.57e-19	83.6
MS.gene29256.t1	AT2G27020	30.151	199	125	5	6	200	8	196	9.63e-18	80.9
MS.gene29256.t1	AT2G05840	28.788	198	124	6	6	196	9	196	4.65e-17	78.2
MS.gene29256.t1	AT2G27020	30.151	199	125	5	6	200	110	298	5.80e-17	80.5

Find 85 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCACCTTGGTCTTGGTTTC+GGG	0.159884	1.1:+22810533	None:intergenic
CGCGAGAACCACGTGAGTTT+TGG	0.220139	1.1:+22811208	None:intergenic
CAGCGGTCATGGAAGCTTTA+TGG	0.228420	1.1:-22810975	MS.gene29256:CDS
TGGTGAGCCATTCCACATTT+TGG	0.235817	1.1:-22810691	MS.gene29256:CDS
AACCACCTTGGTCTTGGTTT+CGG	0.236803	1.1:+22810532	None:intergenic
TATTGCTGCTGAGTGAGTTT+TGG	0.264260	1.1:+22811241	None:intergenic
AGTGCAAACCTGAGCCTTAT+TGG	0.298943	1.1:+22810998	None:intergenic
GCTGCCACGGATCAGGCTTC+TGG	0.299114	1.1:-22810573	MS.gene29256:CDS
ACAAGCTGCAAAGACATATT+TGG	0.303194	1.1:-22810844	MS.gene29256:CDS
TCCTGCTCAGCTGCAGCCTC+AGG	0.321152	1.1:+22810597	None:intergenic
TTTCGGGCGCCACCTTGATC+TGG	0.360438	1.1:+22810549	None:intergenic
TTGGAGAACCACCTTGGTCT+TGG	0.365263	1.1:+22810526	None:intergenic
GGCGTTGGTCTTCTAGTAGC+TGG	0.367779	1.1:-22810954	MS.gene29256:CDS
ATGAGAATATAATTCGGAAT+TGG	0.380773	1.1:+22811172	None:intergenic
GCAGGATGCTGCCACGGATC+AGG	0.390421	1.1:-22810580	MS.gene29256:CDS
AAGCAAGGTTCAGCAGCAAT+AGG	0.399778	1.1:-22811272	MS.gene29256:CDS
CGCTTGGGCAGTTGTAATAG+AGG	0.407257	1.1:+22810910	None:intergenic
TCAAGATTGATGATCACATT+GGG	0.410067	1.1:-22811136	MS.gene29256:CDS
GCTGCAGCCTCAGGTTCAGC+AGG	0.411570	1.1:+22810606	None:intergenic
TCCGGCGGGAGGACTCTTCC+AGG	0.413454	1.1:-22811318	MS.gene29256:CDS
ACCATGTTGTTACGTCAGTA+TGG	0.420845	1.1:+22811342	None:intergenic
CACATTGGGGTCGCCATCGC+TGG	0.422767	1.1:-22811122	MS.gene29256:CDS
ACCTGAGGCTGCAGCTGAGC+AGG	0.426509	1.1:-22810598	MS.gene29256:CDS
AAAACTCACTCAGCAGCAAT+AGG	0.441532	1.1:-22811239	MS.gene29256:CDS
CGTTGTTCAGCTCGCCAATA+AGG	0.445948	1.1:-22811012	MS.gene29256:CDS
ACGAGACGACCAACGGGAAG+CGG	0.451616	1.1:+22811032	None:intergenic
CATCCTTGATCAGATCTTCC+CGG	0.452984	1.1:+22810790	None:intergenic
CCTTGCAAGGTGAAAAGCTC+AGG	0.463589	1.1:-22810746	MS.gene29256:CDS
TGAACAACGAGACGACCAAC+GGG	0.468902	1.1:+22811026	None:intergenic
TTAAATTATCAAATGTCCAT+TGG	0.471688	1.1:+22810507	None:intergenic
TCATGGAAGCTTTATGGCGT+TGG	0.472468	1.1:-22810969	MS.gene29256:CDS
AGGTTTGCACTCAGCGGTCA+TGG	0.472469	1.1:-22810986	MS.gene29256:CDS
GATCAGATCTTCCCGGGAGG+AGG	0.476998	1.1:+22810797	None:intergenic
CGTCTGATGAGAATATAATT+CGG	0.478624	1.1:+22811166	None:intergenic
ATTCAAAATAGTTTCCGCTT+GGG	0.489662	1.1:+22810895	None:intergenic
AGCTGAGCAGGATGCTGCCA+CGG	0.494167	1.1:-22810586	MS.gene29256:CDS
ACAACTTCACAGCCTCCTCC+CGG	0.497935	1.1:-22810809	MS.gene29256:CDS
GAATATCAGGCATTTGCAAT+CGG	0.498552	1.1:-22810876	MS.gene29256:CDS
GGGGTCGCCATCGCTGGTCA+TGG	0.501187	1.1:-22811116	MS.gene29256:CDS
TCAGCTCGCCAATAAGGCTC+AGG	0.504921	1.1:-22811006	MS.gene29256:CDS
TATTCAAAATAGTTTCCGCT+TGG	0.508568	1.1:+22810894	None:intergenic
ACCATTGCTGTGGTTGGAGT+TGG	0.514251	1.1:-22810711	MS.gene29256:CDS
CAGGCTTCTGGTCCAGATCA+AGG	0.516092	1.1:-22810561	MS.gene29256:CDS
GTCATGGCCGTGTTCCTTCG+CGG	0.522231	1.1:-22811100	MS.gene29256:CDS
TTCAAGATTGATGATCACAT+TGG	0.525957	1.1:-22811137	MS.gene29256:CDS
TATGAATCTCCGCTTCCCGT+TGG	0.529000	1.1:-22811041	MS.gene29256:CDS
AGGATGCACTCATTGCAACT+AGG	0.531575	1.1:-22810773	MS.gene29256:CDS
AACCACAGCAATGGTGCATA+CGG	0.536605	1.1:+22810719	None:intergenic
CTCTATTACAACTGCCCAAG+CGG	0.540260	1.1:-22810909	MS.gene29256:CDS
TGACGTAACAACATGGTCTC+CGG	0.543869	1.1:-22811336	MS.gene29256:CDS
CTTCCATGGAGTATTTCACC+TGG	0.547976	1.1:+22811300	None:intergenic
GGATGCACTCATTGCAACTA+GGG	0.552459	1.1:-22810772	MS.gene29256:CDS
GTATGCACCATTGCTGTGGT+TGG	0.557714	1.1:-22810717	MS.gene29256:CDS
ATCCTTGATCAGATCTTCCC+GGG	0.560166	1.1:+22810791	None:intergenic
ACCTTGCTTAAATGCTTCCA+TGG	0.560214	1.1:+22811286	None:intergenic
CTGAACAACGAGACGACCAA+CGG	0.563687	1.1:+22811025	None:intergenic
CTTCCAGGTGAAATACTCCA+TGG	0.566879	1.1:-22811303	MS.gene29256:CDS
CTCCCGGGAAGATCTGATCA+AGG	0.567548	1.1:-22810793	MS.gene29256:CDS
AGACCAAGGTGGTTCTCCAA+TGG	0.576426	1.1:-22810523	MS.gene29256:CDS
TCCTGATCCAAAATGTGGAA+TGG	0.578837	1.1:+22810684	None:intergenic
AACACGGCCATGACCAGCGA+TGG	0.579897	1.1:+22811109	None:intergenic
CAGTTTCCTGATCCAAAATG+TGG	0.582560	1.1:+22810679	None:intergenic
AGCTGCACCTGCTGAACCTG+AGG	0.586152	1.1:-22810613	MS.gene29256:CDS
CAACTTCACAGCCTCCTCCC+GGG	0.586785	1.1:-22810808	MS.gene29256:CDS
ACCAACTCCAACCACAGCAA+TGG	0.594452	1.1:+22810710	None:intergenic
ACCTGGAAGAGTCCTCCCGC+CGG	0.598746	1.1:+22811317	None:intergenic
TCATGTACCGCGAAGGAACA+CGG	0.605644	1.1:+22811093	None:intergenic
TCCATGGAAGCATTTAAGCA+AGG	0.606941	1.1:-22811287	MS.gene29256:CDS
CTCCGTATGCACCATTGCTG+TGG	0.613046	1.1:-22810721	MS.gene29256:CDS
TGTCCATTGGAGAACCACCT+TGG	0.616691	1.1:+22810520	None:intergenic
GCAACTAGGGAGTCCTTGCA+AGG	0.618439	1.1:-22810759	MS.gene29256:CDS
AGCTGGATTAGATGAATCAG+TGG	0.626539	1.1:-22810937	MS.gene29256:CDS
ACCATACTGACGTAACAACA+TGG	0.627662	1.1:-22811343	MS.gene29256:CDS
ACAACATGGTCTCCGGCGGG+AGG	0.631960	1.1:-22811329	MS.gene29256:CDS
TCAGATCTCATGTACCGCGA+AGG	0.651522	1.1:+22811086	None:intergenic
GTAACAACATGGTCTCCGGC+GGG	0.652207	1.1:-22811332	MS.gene29256:CDS
GGCGCCCGAAACCAAGACCA+AGG	0.654625	1.1:-22810537	MS.gene29256:CDS
CGTAACAACATGGTCTCCGG+CGG	0.661500	1.1:-22811333	MS.gene29256:CDS
CAAGATTGATGATCACATTG+GGG	0.671177	1.1:-22811135	MS.gene29256:CDS
TGGACCAGAAGCCTGATCCG+TGG	0.681580	1.1:+22810569	None:intergenic
AGGCTCAGGTTTGCACTCAG+CGG	0.694438	1.1:-22810992	MS.gene29256:CDS
TCTCCGATCCAAAACTCACG+TGG	0.728289	1.1:-22811216	MS.gene29256:CDS
CTTGATCAGATCTTCCCGGG+AGG	0.728540	1.1:+22810794	None:intergenic
GCCCGAAACCAAGACCAAGG+TGG	0.736598	1.1:-22810534	MS.gene29256:CDS
GCTTCTGGTCCAGATCAAGG+TGG	0.771574	1.1:-22810558	MS.gene29256:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATGAGAATATAATTCGGAAT+TGG	+	chr1.1:22810705-22810724	None:intergenic	25.0%
	ATTCAAAATAGTTTCCGCTT+GGG	+	chr1.1:22810982-22811001	None:intergenic	30.0%
	CGTCTGATGAGAATATAATT+CGG	+	chr1.1:22810711-22810730	None:intergenic	30.0%
	TATTCAAAATAGTTTCCGCT+TGG	+	chr1.1:22810983-22811002	None:intergenic	30.0%
!	TCAAGATTGATGATCACATT+GGG	-	chr1.1:22810738-22810757	MS.gene29256:CDS	30.0%
!	TTCAAGATTGATGATCACAT+TGG	-	chr1.1:22810737-22810756	MS.gene29256:CDS	30.0%
!!	CGGAAACTATTTTGAATATC+AGG	-	chr1.1:22810985-22811004	MS.gene29256:CDS	30.0%
!!!	TGATACTTTTGAGATTGTGA+GGG	-	chr1.1:22811231-22811250	MS.gene29256:CDS	30.0%
!!!	TTGATACTTTTGAGATTGTG+AGG	-	chr1.1:22811230-22811249	MS.gene29256:CDS	30.0%
	ACAAGCTGCAAAGACATATT+TGG	-	chr1.1:22811030-22811049	MS.gene29256:CDS	35.0%
	GAATATCAGGCATTTGCAAT+CGG	-	chr1.1:22810998-22811017	MS.gene29256:CDS	35.0%
!	CAAGATTGATGATCACATTG+GGG	-	chr1.1:22810739-22810758	MS.gene29256:CDS	35.0%
	AAAACTCACTCAGCAGCAAT+AGG	-	chr1.1:22810635-22810654	MS.gene29256:CDS	40.0%
	ACCATACTGACGTAACAACA+TGG	-	chr1.1:22810531-22810550	MS.gene29256:CDS	40.0%
	ACCATGTTGTTACGTCAGTA+TGG	+	chr1.1:22810535-22810554	None:intergenic	40.0%
	ACCTTGCTTAAATGCTTCCA+TGG	+	chr1.1:22810591-22810610	None:intergenic	40.0%
	CAGTTTCCTGATCCAAAATG+TGG	+	chr1.1:22811198-22811217	None:intergenic	40.0%
	TCCTGATCCAAAATGTGGAA+TGG	+	chr1.1:22811193-22811212	None:intergenic	40.0%
!	AGCTGGATTAGATGAATCAG+TGG	-	chr1.1:22810937-22810956	MS.gene29256:CDS	40.0%
!	TATTGCTGCTGAGTGAGTTT+TGG	+	chr1.1:22810636-22810655	None:intergenic	40.0%
!!	TCCATGGAAGCATTTAAGCA+AGG	-	chr1.1:22810587-22810606	MS.gene29256:CDS	40.0%
!!!	TACTTTTGAGATTGTGAGGG+AGG	-	chr1.1:22811234-22811253	MS.gene29256:CDS	40.0%
	AACCACAGCAATGGTGCATA+CGG	+	chr1.1:22811158-22811177	None:intergenic	45.0%
	AAGCAAGGTTCAGCAGCAAT+AGG	-	chr1.1:22810602-22810621	MS.gene29256:CDS	45.0%
	AGGATGCACTCATTGCAACT+AGG	-	chr1.1:22811101-22811120	MS.gene29256:CDS	45.0%
	ATCCTTGATCAGATCTTCCC+GGG	+	chr1.1:22811086-22811105	None:intergenic	45.0%
	CATCCTTGATCAGATCTTCC+CGG	+	chr1.1:22811087-22811106	None:intergenic	45.0%
	CTCTATTACAACTGCCCAAG+CGG	-	chr1.1:22810965-22810984	MS.gene29256:CDS	45.0%
	CTTCCAGGTGAAATACTCCA+TGG	-	chr1.1:22810571-22810590	MS.gene29256:CDS	45.0%
	GGATGCACTCATTGCAACTA+GGG	-	chr1.1:22811102-22811121	MS.gene29256:CDS	45.0%
	TGACGTAACAACATGGTCTC+CGG	-	chr1.1:22810538-22810557	MS.gene29256:CDS	45.0%
!	AGTGCAAACCTGAGCCTTAT+TGG	+	chr1.1:22810879-22810898	None:intergenic	45.0%
!	CTTCCATGGAGTATTTCACC+TGG	+	chr1.1:22810577-22810596	None:intergenic	45.0%
!	GCCATTCCACATTTTGGATC+AGG	-	chr1.1:22811189-22811208	MS.gene29256:CDS	45.0%
!	TCATGGAAGCTTTATGGCGT+TGG	-	chr1.1:22810905-22810924	MS.gene29256:CDS	45.0%
!	TGGTGAGCCATTCCACATTT+TGG	-	chr1.1:22811183-22811202	MS.gene29256:CDS	45.0%
!!	AACCACCTTGGTCTTGGTTT+CGG	+	chr1.1:22811345-22811364	None:intergenic	45.0%
!!!	CTGCTGAGTGAGTTTTGGAT+CGG	+	chr1.1:22810631-22810650	None:intergenic	45.0%
!!!	GAACCACGTGAGTTTTGGAT+CGG	+	chr1.1:22810664-22810683	None:intergenic	45.0%
	ACCAACTCCAACCACAGCAA+TGG	+	chr1.1:22811167-22811186	None:intergenic	50.0%
	ACCATTGCTGTGGTTGGAGT+TGG	-	chr1.1:22811163-22811182	MS.gene29256:CDS	50.0%
	AGACCAAGGTGGTTCTCCAA+TGG	-	chr1.1:22811351-22811370	MS.gene29256:CDS	50.0%
	CAGCGGTCATGGAAGCTTTA+TGG	-	chr1.1:22810899-22810918	MS.gene29256:CDS	50.0%
	CCTTGCAAGGTGAAAAGCTC+AGG	-	chr1.1:22811128-22811147	MS.gene29256:CDS	50.0%
	CGCTTGGGCAGTTGTAATAG+AGG	+	chr1.1:22810967-22810986	None:intergenic	50.0%
	CGTTGTTCAGCTCGCCAATA+AGG	-	chr1.1:22810862-22810881	MS.gene29256:CDS	50.0%
	CTGAACAACGAGACGACCAA+CGG	+	chr1.1:22810852-22810871	None:intergenic	50.0%
	GTATGCACCATTGCTGTGGT+TGG	-	chr1.1:22811157-22811176	MS.gene29256:CDS	50.0%
	TATGAATCTCCGCTTCCCGT+TGG	-	chr1.1:22810833-22810852	MS.gene29256:CDS	50.0%
	TCAGATCTCATGTACCGCGA+AGG	+	chr1.1:22810791-22810810	None:intergenic	50.0%
	TCATGTACCGCGAAGGAACA+CGG	+	chr1.1:22810784-22810803	None:intergenic	50.0%
	TCTCCGATCCAAAACTCACG+TGG	-	chr1.1:22810658-22810677	MS.gene29256:CDS	50.0%
	TGAACAACGAGACGACCAAC+GGG	+	chr1.1:22810851-22810870	None:intergenic	50.0%
	TGTCCATTGGAGAACCACCT+TGG	+	chr1.1:22811357-22811376	None:intergenic	50.0%
	TTGGAGAACCACCTTGGTCT+TGG	+	chr1.1:22811351-22811370	None:intergenic	50.0%
!	CCTGAGCTTTTCACCTTGCA+AGG	+	chr1.1:22811131-22811150	None:intergenic	50.0%
!!	ACCACCTTGGTCTTGGTTTC+GGG	+	chr1.1:22811344-22811363	None:intergenic	50.0%
	ACAACTTCACAGCCTCCTCC+CGG	-	chr1.1:22811065-22811084	MS.gene29256:CDS	55.0%
	AGGCTCAGGTTTGCACTCAG+CGG	-	chr1.1:22810882-22810901	MS.gene29256:CDS	55.0%
	AGGTTTGCACTCAGCGGTCA+TGG	-	chr1.1:22810888-22810907	MS.gene29256:CDS	55.0%
	CAGGCTTCTGGTCCAGATCA+AGG	-	chr1.1:22811313-22811332	MS.gene29256:CDS	55.0%
	CGTAACAACATGGTCTCCGG+CGG	-	chr1.1:22810541-22810560	MS.gene29256:CDS	55.0%
	CTCCCGGGAAGATCTGATCA+AGG	-	chr1.1:22811081-22811100	MS.gene29256:CDS	55.0%
	CTCCGTATGCACCATTGCTG+TGG	-	chr1.1:22811153-22811172	MS.gene29256:CDS	55.0%
	CTTGATCAGATCTTCCCGGG+AGG	+	chr1.1:22811083-22811102	None:intergenic	55.0%
	GCAACTAGGGAGTCCTTGCA+AGG	-	chr1.1:22811115-22811134	MS.gene29256:CDS	55.0%
	GCTTCTGGTCCAGATCAAGG+TGG	-	chr1.1:22811316-22811335	MS.gene29256:CDS	55.0%
	GTAACAACATGGTCTCCGGC+GGG	-	chr1.1:22810542-22810561	MS.gene29256:CDS	55.0%
	TCAGCTCGCCAATAAGGCTC+AGG	-	chr1.1:22810868-22810887	MS.gene29256:CDS	55.0%
!	CGCGAGAACCACGTGAGTTT+TGG	+	chr1.1:22810669-22810688	None:intergenic	55.0%
!!	GGCGTTGGTCTTCTAGTAGC+TGG	-	chr1.1:22810920-22810939	MS.gene29256:CDS	55.0%
	AACACGGCCATGACCAGCGA+TGG	+	chr1.1:22810768-22810787	None:intergenic	60.0%
	ACGAGACGACCAACGGGAAG+CGG	+	chr1.1:22810845-22810864	None:intergenic	60.0%
	AGCTGAGCAGGATGCTGCCA+CGG	-	chr1.1:22811288-22811307	MS.gene29256:CDS	60.0%
	AGCTGCACCTGCTGAACCTG+AGG	-	chr1.1:22811261-22811280	MS.gene29256:CDS	60.0%
	CAACTTCACAGCCTCCTCCC+GGG	-	chr1.1:22811066-22811085	MS.gene29256:CDS	60.0%
	GATCAGATCTTCCCGGGAGG+AGG	+	chr1.1:22811080-22811099	None:intergenic	60.0%
	GCCCGAAACCAAGACCAAGG+TGG	-	chr1.1:22811340-22811359	MS.gene29256:CDS	60.0%
	GTCATGGCCGTGTTCCTTCG+CGG	-	chr1.1:22810774-22810793	MS.gene29256:CDS	60.0%
	TGGACCAGAAGCCTGATCCG+TGG	+	chr1.1:22811308-22811327	None:intergenic	60.0%
	TTTCGGGCGCCACCTTGATC+TGG	+	chr1.1:22811328-22811347	None:intergenic	60.0%
	ACAACATGGTCTCCGGCGGG+AGG	-	chr1.1:22810545-22810564	MS.gene29256:CDS	65.0%
	ACCTGAGGCTGCAGCTGAGC+AGG	-	chr1.1:22811276-22811295	MS.gene29256:CDS	65.0%
	ACCTGGAAGAGTCCTCCCGC+CGG	+	chr1.1:22810560-22810579	None:intergenic	65.0%
	CACATTGGGGTCGCCATCGC+TGG	-	chr1.1:22810752-22810771	MS.gene29256:CDS	65.0%
	GCAGGATGCTGCCACGGATC+AGG	-	chr1.1:22811294-22811313	MS.gene29256:CDS	65.0%
	GCTGCAGCCTCAGGTTCAGC+AGG	+	chr1.1:22811271-22811290	None:intergenic	65.0%
	GCTGCCACGGATCAGGCTTC+TGG	-	chr1.1:22811301-22811320	MS.gene29256:CDS	65.0%
	GGCGCCCGAAACCAAGACCA+AGG	-	chr1.1:22811337-22811356	MS.gene29256:CDS	65.0%
	TCCTGCTCAGCTGCAGCCTC+AGG	+	chr1.1:22811280-22811299	None:intergenic	65.0%
	GGGGTCGCCATCGCTGGTCA+TGG	-	chr1.1:22810758-22810777	MS.gene29256:CDS	70.0%
	TCCGGCGGGAGGACTCTTCC+AGG	-	chr1.1:22810556-22810575	MS.gene29256:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	22810515	22811381	22810515	ID=MS.gene29256
chr1.1	mRNA	22810515	22811381	22810515	ID=MS.gene29256.t1;Parent=MS.gene29256
chr1.1	exon	22810515	22811381	22810515	ID=MS.gene29256.t1.exon1;Parent=MS.gene29256.t1
chr1.1	CDS	22810515	22811381	22810515	ID=cds.MS.gene29256.t1;Parent=MS.gene29256.t1

Gene Sequence

>MS.gene29256

ATGTTTAGAAATCAATACCATACTGACGTAACAACATGGTCTCCGGCGGGAGGACTCTTCCAGGTGAAATACTCCATGGAAGCATTTAAGCAAGGTTCAGCAGCAATAGGTCTCCGATCCAAAACTCACTCAGCAGCAATAGGTCTCCGATCCAAAACTCACGTGGTTCTCGCGTGTGTTAACAAAGCCAATTCCGAATTATATTCTCATCAGACGAAGATCTTCAAGATTGATGATCACATTGGGGTCGCCATCGCTGGTCATGGCCGTGTTCCTTCGCGGTACATGAGATCTGAATGCATTAACTATAATTACACTTATGAATCTCCGCTTCCCGTTGGTCGTCTCGTTGTTCAGCTCGCCAATAAGGCTCAGGTTTGCACTCAGCGGTCATGGAAGCTTTATGGCGTTGGTCTTCTAGTAGCTGGATTAGATGAATCAGTGGCTCACCTCTATTACAACTGCCCAAGCGGAAACTATTTTGAATATCAGGCATTTGCAATCGGTTCATGCTCACAAGCTGCAAAGACATATTTGGAACGCAAATTTAACAACTTCACAGCCTCCTCCCGGGAAGATCTGATCAAGGATGCACTCATTGCAACTAGGGAGTCCTTGCAAGGTGAAAAGCTCAGGATCTCCGTATGCACCATTGCTGTGGTTGGAGTTGGTGAGCCATTCCACATTTTGGATCAGGAAACTGTTCAACAATTGATTGATACTTTTGAGATTGTGAGGGAGGAAGAAGCTGCACCTGCTGAACCTGAGGCTGCAGCTGAGCAGGATGCTGCCACGGATCAGGCTTCTGGTCCAGATCAAGGTGGCGCCCGAAACCAAGACCAAGGTGGTTCTCCAATGGACATTTGA

Protein sequence

>MS.gene29256.t1

MFRNQYHTDVTTWSPAGGLFQVKYSMEAFKQGSAAIGLRSKTHSAAIGLRSKTHVVLACVNKANSELYSHQTKIFKIDDHIGVAIAGHGRVPSRYMRSECINYNYTYESPLPVGRLVVQLANKAQVCTQRSWKLYGVGLLVAGLDESVAHLYYNCPSGNYFEYQAFAIGSCSQAAKTYLERKFNNFTASSREDLIKDALIATRESLQGEKLRISVCTIAVVGVGEPFHILDQETVQQLIDTFEIVREEEAAPAEPEAAAEQDAATDQASGPDQGGARNQDQGGSPMDI