Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26985.t1 | XP_013466130.1 | 100 | 241 | 0 | 0 | 1 | 241 | 1 | 241 | 3.20E-133 | 484.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26985.t1 | P34066 | 85.9 | 241 | 34 | 0 | 1 | 241 | 1 | 241 | 8.5e-119 | 427.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26985.t1 | I3RZQ6 | 100.0 | 241 | 0 | 0 | 1 | 241 | 1 | 241 | 2.3e-133 | 484.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050752 | MS.gene26985 | 0.801503 | 8.73E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene26985 | 0.838767 | 2.36E-57 | -1.69E-46 |
| MS.gene050945 | MS.gene26985 | 0.803161 | 3.98E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene26985 | 0.816192 | 6.28E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene26985 | 0.816429 | 5.56E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene26985 | 0.832038 | 1.19E-55 | -1.69E-46 |
| MS.gene051748 | MS.gene26985 | 0.80027 | 1.56E-48 | -1.69E-46 |
| MS.gene051756 | MS.gene26985 | 0.835194 | 1.93E-56 | -1.69E-46 |
| MS.gene051809 | MS.gene26985 | 0.806176 | 9.34E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene26985 | 0.821609 | 3.69E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene26985 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene26985 | 0.826035 | 3.38E-54 | -1.69E-46 |
| MS.gene053952 | MS.gene26985 | 0.80314 | 4.02E-49 | -1.69E-46 |
| MS.gene055424 | MS.gene26985 | 0.810872 | 9.29E-51 | -1.69E-46 |
| MS.gene056097 | MS.gene26985 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene056992 | MS.gene26985 | 0.84705 | 1.48E-59 | -1.69E-46 |
| MS.gene057094 | MS.gene26985 | 0.86551 | 5.60E-65 | -1.69E-46 |
| MS.gene057234 | MS.gene26985 | 0.806507 | 7.95E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene26985 | 0.809167 | 2.16E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene26985 | 0.801845 | 7.43E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene26985 | 0.821347 | 4.24E-53 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26985.t1 | MTR_1g022410 | 97.887 | 284 | 3 | 1 | 1 | 281 | 1 | 284 | 0.0 | 573 |
| MS.gene26985.t1 | MTR_4g012740 | 78.571 | 322 | 25 | 3 | 1 | 281 | 232 | 550 | 2.45e-163 | 465 |
| MS.gene26985.t1 | MTR_4g012740 | 64.773 | 88 | 16 | 2 | 1 | 73 | 1 | 88 | 1.48e-24 | 103 |
| MS.gene26985.t1 | MTR_4g012740 | 63.636 | 88 | 17 | 2 | 1 | 73 | 78 | 165 | 2.13e-24 | 102 |
| MS.gene26985.t1 | MTR_4g012740 | 63.636 | 88 | 17 | 2 | 1 | 73 | 155 | 242 | 2.13e-24 | 102 |
| MS.gene26985.t1 | MTR_4g057090 | 70.175 | 285 | 55 | 4 | 1 | 281 | 83 | 341 | 6.53e-124 | 357 |
| MS.gene26985.t1 | MTR_3g113730 | 87.805 | 164 | 18 | 1 | 118 | 281 | 4 | 165 | 3.77e-103 | 298 |
| MS.gene26985.t1 | MTR_1g112250 | 45.902 | 183 | 94 | 2 | 1 | 178 | 3 | 185 | 7.61e-47 | 157 |
| MS.gene26985.t1 | MTR_7g070070 | 38.785 | 214 | 125 | 3 | 5 | 214 | 4 | 215 | 3.96e-43 | 147 |
| MS.gene26985.t1 | MTR_5g016590 | 38.785 | 214 | 125 | 3 | 5 | 214 | 4 | 215 | 6.34e-43 | 147 |
| MS.gene26985.t1 | MTR_0167s0060 | 35.111 | 225 | 141 | 3 | 1 | 223 | 1 | 222 | 2.17e-41 | 143 |
| MS.gene26985.t1 | MTR_6g024135 | 40.838 | 191 | 108 | 3 | 6 | 193 | 8 | 196 | 1.02e-38 | 136 |
| MS.gene26985.t1 | MTR_2g060830 | 34.348 | 230 | 145 | 5 | 6 | 230 | 9 | 237 | 1.62e-38 | 135 |
| MS.gene26985.t1 | MTR_8g464460 | 35.217 | 230 | 143 | 5 | 6 | 230 | 9 | 237 | 2.25e-38 | 135 |
| MS.gene26985.t1 | MTR_8g075320 | 37.736 | 212 | 123 | 4 | 5 | 210 | 3 | 211 | 8.29e-38 | 134 |
| MS.gene26985.t1 | MTR_2g016050 | 35.681 | 213 | 128 | 4 | 4 | 210 | 2 | 211 | 4.33e-35 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26985.t1 | AT1G47250 | 78.445 | 283 | 53 | 2 | 1 | 281 | 1 | 277 | 6.24e-160 | 446 |
| MS.gene26985.t1 | AT5G42790 | 86.134 | 238 | 33 | 0 | 1 | 238 | 1 | 238 | 6.61e-159 | 443 |
| MS.gene26985.t1 | AT1G53850 | 38.819 | 237 | 135 | 4 | 1 | 232 | 3 | 234 | 2.41e-46 | 155 |
| MS.gene26985.t1 | AT1G53850 | 38.819 | 237 | 135 | 4 | 1 | 232 | 3 | 234 | 2.41e-46 | 155 |
| MS.gene26985.t1 | AT3G14290 | 45.355 | 183 | 95 | 2 | 1 | 178 | 3 | 185 | 2.44e-46 | 155 |
| MS.gene26985.t1 | AT3G22110 | 36.017 | 236 | 141 | 4 | 5 | 232 | 4 | 237 | 2.43e-43 | 148 |
| MS.gene26985.t1 | AT1G16470 | 36.444 | 225 | 138 | 3 | 1 | 223 | 1 | 222 | 2.39e-40 | 140 |
| MS.gene26985.t1 | AT1G16470 | 36.444 | 225 | 138 | 3 | 1 | 223 | 1 | 222 | 2.39e-40 | 140 |
| MS.gene26985.t1 | AT1G79210 | 36.000 | 225 | 139 | 3 | 1 | 223 | 1 | 222 | 7.19e-40 | 139 |
| MS.gene26985.t1 | AT1G79210 | 36.000 | 225 | 139 | 3 | 1 | 223 | 1 | 222 | 7.19e-40 | 139 |
| MS.gene26985.t1 | AT1G79210 | 36.000 | 225 | 139 | 3 | 1 | 223 | 1 | 222 | 7.19e-40 | 139 |
| MS.gene26985.t1 | AT5G35590 | 34.348 | 230 | 145 | 5 | 6 | 230 | 9 | 237 | 1.95e-38 | 135 |
| MS.gene26985.t1 | AT5G66140 | 38.208 | 212 | 122 | 4 | 5 | 210 | 3 | 211 | 4.08e-37 | 132 |
| MS.gene26985.t1 | AT2G05840 | 34.348 | 230 | 145 | 5 | 6 | 230 | 9 | 237 | 4.32e-37 | 132 |
| MS.gene26985.t1 | AT3G51260 | 37.264 | 212 | 124 | 4 | 5 | 210 | 3 | 211 | 5.50e-36 | 129 |
| MS.gene26985.t1 | AT3G51260 | 37.264 | 212 | 124 | 4 | 5 | 210 | 3 | 211 | 6.42e-36 | 129 |
| MS.gene26985.t1 | AT2G05840 | 36.181 | 199 | 123 | 3 | 6 | 200 | 9 | 207 | 1.40e-35 | 127 |
| MS.gene26985.t1 | AT2G27020 | 37.895 | 190 | 115 | 2 | 6 | 193 | 8 | 196 | 8.12e-35 | 126 |
| MS.gene26985.t1 | AT2G05840 | 36.170 | 188 | 116 | 3 | 6 | 189 | 9 | 196 | 1.18e-33 | 122 |
| MS.gene26985.t1 | AT2G27020 | 37.895 | 190 | 115 | 2 | 6 | 193 | 110 | 298 | 1.77e-33 | 125 |
| MS.gene26985.t1 | AT4G15165 | 33.654 | 208 | 87 | 7 | 5 | 204 | 4 | 168 | 2.35e-25 | 100 |
Find 83 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGAGCCTTTCCACATTT+TGG | 0.215333 | 1.3:+2550662 | MS.gene26985:CDS |
| CGCGAGAACCACGTGAGTTT+TGG | 0.220139 | 1.3:-2547563 | None:intergenic |
| ACAAGCTGCAAAGACATATT+TGG | 0.303194 | 1.3:+2550509 | MS.gene26985:CDS |
| TCCTGCTCAGCTGCAGCCTC+AGG | 0.321152 | 1.3:-2550756 | None:intergenic |
| TAACCTAACCTGAGCCTTAT+CGG | 0.340591 | 1.3:-2547782 | None:intergenic |
| GCTGCCACAGATCAGGCTTC+TGG | 0.352014 | 1.3:+2550780 | MS.gene26985:CDS |
| CGATCATGGAAGCGTCCTTA+TGG | 0.372743 | 1.3:+2550378 | MS.gene26985:CDS |
| ATGAGAAGATAGTTCAGAAT+TGG | 0.382855 | 1.3:-2547599 | None:intergenic |
| GTAGCTGGATTAGATGAATC+AGG | 0.390011 | 1.3:+2550414 | MS.gene26985:CDS |
| GGCGTTGGACTTCTAGTAGC+TGG | 0.403744 | 1.3:+2550399 | MS.gene26985:CDS |
| CGCTTGGGCAGTTGTAATAG+AGG | 0.407257 | 1.3:-2550443 | None:intergenic |
| GCTGCAGCCTCAGGTTCAGC+AGG | 0.411570 | 1.3:-2550747 | None:intergenic |
| ACCTGAGGCTGCAGCTGAGC+AGG | 0.426509 | 1.3:+2550755 | MS.gene26985:CDS |
| TCATCAGAAGAAGATCTTCA+AGG | 0.432131 | 1.3:+2547618 | MS.gene26985:CDS |
| GCAGGATGCTGCCACAGATC+AGG | 0.446173 | 1.3:+2550773 | MS.gene26985:CDS |
| TTAAATTATCAAATCTCCAT+TGG | 0.446472 | 1.3:-2550846 | None:intergenic |
| AAGCAAGGTTCAGCAGCAAT+AGG | 0.446969 | 1.3:+2547532 | MS.gene26985:CDS |
| ACCGGCGGGAAGACTCTTCC+AGG | 0.447398 | 1.3:+2547486 | MS.gene26985:CDS |
| CATCTTTGATCAGATCTTCC+CGG | 0.448900 | 1.3:-2550563 | None:intergenic |
| CAGATCAAAGTGGTGCTGGT+GGG | 0.452356 | 1.3:+2550805 | MS.gene26985:CDS |
| CCTTGCAAGGTGAAAAGCTC+AGG | 0.463589 | 1.3:+2550607 | MS.gene26985:CDS |
| GCATTCAGATCTCATGTAAC+GGG | 0.468182 | 1.3:-2547698 | None:intergenic |
| GATCAGATCTTCCCGGGAGG+AGG | 0.468370 | 1.3:-2550556 | None:intergenic |
| ACGGCCATCGGCGGTGAGAC+CGG | 0.470971 | 1.3:-2547668 | None:intergenic |
| GGTGCTGGTGGGGCTGACCA+AGG | 0.471608 | 1.3:+2550816 | MS.gene26985:CDS |
| GCAGATCAAAGTGGTGCTGG+TGG | 0.482449 | 1.3:+2550804 | MS.gene26985:CDS |
| CGTCGTTCAGCTCGCCGATA+AGG | 0.485800 | 1.3:+2547768 | MS.gene26985:CDS |
| ATTCAAAATAGTTTCCGCTT+GGG | 0.489662 | 1.3:-2550458 | None:intergenic |
| ACTAGAAGTCCAACGCCATA+AGG | 0.491926 | 1.3:-2550393 | None:intergenic |
| AGGTTTGCACTCAGCGATCA+TGG | 0.494067 | 1.3:+2550364 | MS.gene26985:intron |
| ACAACTTCACAGCCTCCTCC+CGG | 0.497935 | 1.3:+2550544 | MS.gene26985:CDS |
| GAATATCAGGCATTTGCAAT+CGG | 0.498552 | 1.3:+2550477 | MS.gene26985:CDS |
| CTTCCATGGCGTATTCCACC+TGG | 0.500589 | 1.3:-2547504 | None:intergenic |
| TATTCAAAATAGTTTCCGCT+TGG | 0.508568 | 1.3:-2550459 | None:intergenic |
| ACCATTGCTGTGGTTGGAGT+TGG | 0.514251 | 1.3:+2550642 | MS.gene26985:CDS |
| TTCAAGGTTGATGATCATAT+CGG | 0.515192 | 1.3:+2547634 | MS.gene26985:CDS |
| ATCTTTGATCAGATCTTCCC+GGG | 0.521887 | 1.3:-2550562 | None:intergenic |
| AAGATGCACTCATTGCAACT+AGG | 0.529448 | 1.3:+2550580 | MS.gene26985:CDS |
| AGATCAAAGTGGTGCTGGTG+GGG | 0.531118 | 1.3:+2550806 | MS.gene26985:CDS |
| GGTGCAGATCAAAGTGGTGC+TGG | 0.531835 | 1.3:+2550801 | MS.gene26985:CDS |
| TGGAAGCGTCCTTATGGCGT+TGG | 0.534162 | 1.3:+2550384 | MS.gene26985:CDS |
| AACCACAGCAATGGTGCATA+CGG | 0.536605 | 1.3:-2550634 | None:intergenic |
| CTCTATTACAACTGCCCAAG+CGG | 0.540260 | 1.3:+2550444 | MS.gene26985:CDS |
| ACGAGTCTACCAACGGGAAG+CGG | 0.541672 | 1.3:-2547748 | None:intergenic |
| AGATGCACTCATTGCAACTA+GGG | 0.552459 | 1.3:+2550581 | MS.gene26985:CDS |
| TCAGCTCGCCGATAAGGCTC+AGG | 0.552948 | 1.3:+2547774 | MS.gene26985:CDS |
| CATATCGGCGTTGCCATCGC+CGG | 0.553468 | 1.3:+2547649 | MS.gene26985:CDS |
| GTATGCACCATTGCTGTGGT+TGG | 0.557714 | 1.3:+2550636 | MS.gene26985:CDS |
| ATCGCCGGTCTCACCGCCGA+TGG | 0.557766 | 1.3:+2547664 | MS.gene26985:CDS |
| ACCTTGCTTAACTGCTTCCA+TGG | 0.560856 | 1.3:-2547518 | None:intergenic |
| TGCATTCAGATCTCATGTAA+CGG | 0.564752 | 1.3:-2547699 | None:intergenic |
| CGACGTAACAACATGGTCAC+CGG | 0.568536 | 1.3:+2547468 | MS.gene26985:CDS |
| TGAACGACGAGTCTACCAAC+GGG | 0.572203 | 1.3:-2547754 | None:intergenic |
| TAGCTGGATTAGATGAATCA+GGG | 0.572392 | 1.3:+2550415 | MS.gene26985:CDS |
| ACGGGAAAGAACACGGCCAT+CGG | 0.576909 | 1.3:-2547680 | None:intergenic |
| CAGTTTCCTGATCCAAAATG+TGG | 0.582560 | 1.3:-2550674 | None:intergenic |
| TATGAATCTCCGCTTCCCGT+TGG | 0.585267 | 1.3:+2547739 | MS.gene26985:CDS |
| AGCTGCACCTGCTGAACCTG+AGG | 0.586152 | 1.3:+2550740 | MS.gene26985:CDS |
| CAACTTCACAGCCTCCTCCC+GGG | 0.586785 | 1.3:+2550545 | MS.gene26985:CDS |
| TGACCAAGGTGGTTCTCCAA+TGG | 0.586988 | 1.3:+2550830 | MS.gene26985:CDS |
| ATCGGCGGTGAGACCGGCGA+TGG | 0.592757 | 1.3:-2547662 | None:intergenic |
| TCCTGATCCAAAATGTGGAA+AGG | 0.593184 | 1.3:-2550669 | None:intergenic |
| ACCAACTCCAACCACAGCAA+TGG | 0.594452 | 1.3:-2550643 | None:intergenic |
| GCTGGTGGGGCTGACCAAGG+TGG | 0.603851 | 1.3:+2550819 | MS.gene26985:CDS |
| CTTCCAGGTGGAATACGCCA+TGG | 0.612270 | 1.3:+2547501 | MS.gene26985:CDS |
| CTCCGTATGCACCATTGCTG+TGG | 0.615712 | 1.3:+2550632 | MS.gene26985:CDS |
| GCAACTAGGGAGTCCTTGCA+AGG | 0.618439 | 1.3:+2550594 | MS.gene26985:CDS |
| TCTCCATTGGAGAACCACCT+TGG | 0.619130 | 1.3:-2550833 | None:intergenic |
| ACCTGGAAGAGTCTTCCCGC+CGG | 0.625765 | 1.3:-2547487 | None:intergenic |
| GTAACAACATGGTCACCGGC+GGG | 0.626802 | 1.3:+2547472 | MS.gene26985:CDS |
| CGTAACAACATGGTCACCGG+CGG | 0.638962 | 1.3:+2547471 | MS.gene26985:CDS |
| GGAAAGAACACGGCCATCGG+CGG | 0.645115 | 1.3:-2547677 | None:intergenic |
| TGCACCAGAAGCCTGATCTG+TGG | 0.645294 | 1.3:-2550784 | None:intergenic |
| TCATGTAACGGGAAAGAACA+CGG | 0.645339 | 1.3:-2547687 | None:intergenic |
| CTGAACGACGAGTCTACCAA+CGG | 0.653690 | 1.3:-2547755 | None:intergenic |
| ACGATACCGACGTAACAACA+TGG | 0.654506 | 1.3:+2547461 | MS.gene26985:CDS |
| GCCATGGAAGCAGTTAAGCA+AGG | 0.656151 | 1.3:+2547517 | MS.gene26985:CDS |
| AGCTGGATTAGATGAATCAG+GGG | 0.660204 | 1.3:+2550416 | MS.gene26985:CDS |
| CGGTGACCATGTTGTTACGT+CGG | 0.692398 | 1.3:-2547467 | None:intergenic |
| GCTTCTGGTGCAGATCAAAG+TGG | 0.697173 | 1.3:+2550795 | MS.gene26985:CDS |
| GGCGGGAAGACTCTTCCAGG+TGG | 0.706418 | 1.3:+2547489 | MS.gene26985:CDS |
| TCTCCGATCCAAAACTCACG+TGG | 0.728289 | 1.3:+2547555 | MS.gene26985:CDS |
| TTTGATCAGATCTTCCCGGG+AGG | 0.729135 | 1.3:-2550559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAAATTAAGTAATTTTAA+TGG | + | chr1.3:2547906-2547925 | MS.gene26985:intron | 10.0% |
| !! | AAATAATAACAAAATCAAAC+AGG | - | chr1.3:2548639-2548658 | None:intergenic | 15.0% |
| !! | ATTCAATAAACTAAAACATT+TGG | + | chr1.3:2550128-2550147 | MS.gene26985:intron | 15.0% |
| !! | TTCTCTAATGTTTATTATAT+AGG | + | chr1.3:2548468-2548487 | MS.gene26985:intron | 15.0% |
| !!! | ACTATTTTGTATACTTAATA+TGG | + | chr1.3:2549145-2549164 | MS.gene26985:intron | 15.0% |
| !! | AAACATTAGAGAATACATTT+CGG | - | chr1.3:2548461-2548480 | None:intergenic | 20.0% |
| !! | AAATACAGTGTTAACAAAAA+GGG | - | chr1.3:2548053-2548072 | None:intergenic | 20.0% |
| !! | ATATAGAAACAGCATAAATA+GGG | - | chr1.3:2550073-2550092 | None:intergenic | 20.0% |
| !! | ATATTACATGGAAAAGAATA+AGG | + | chr1.3:2550270-2550289 | MS.gene26985:intron | 20.0% |
| !! | CAAAATTACATCATAAATAC+TGG | - | chr1.3:2550338-2550357 | None:intergenic | 20.0% |
| !! | TATATAGAAACAGCATAAAT+AGG | - | chr1.3:2550074-2550093 | None:intergenic | 20.0% |
| !! | TTTAACTCAGTAATTCAATT+AGG | + | chr1.3:2547884-2547903 | MS.gene26985:intron | 20.0% |
| !!! | ATTTATGATGTAATTTTGAG+TGG | + | chr1.3:2550340-2550359 | MS.gene26985:intron | 20.0% |
| !!! | GTGTTTTATTAATAGAAAGT+TGG | + | chr1.3:2550201-2550220 | MS.gene26985:intron | 20.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | + | chr1.3:2548276-2548295 | MS.gene26985:intron | 25.0% |
| ! | ACACACATTTATATACTTCT+GGG | - | chr1.3:2549071-2549090 | None:intergenic | 25.0% |
| ! | ATTTATATACTTCTGGGTAT+AGG | - | chr1.3:2549065-2549084 | None:intergenic | 25.0% |
| ! | CAAATACAGTGTTAACAAAA+AGG | - | chr1.3:2548054-2548073 | None:intergenic | 25.0% |
| ! | GTATACTTAATATGGAAGTA+GGG | + | chr1.3:2549153-2549172 | MS.gene26985:intron | 25.0% |
| ! | TAGTCGAGATTATTTACTTT+AGG | + | chr1.3:2547992-2548011 | MS.gene26985:intron | 25.0% |
| ! | TATAGAAACAGCATAAATAG+GGG | - | chr1.3:2550072-2550091 | None:intergenic | 25.0% |
| ! | TATTAATAGAAAGTTGGACA+GGG | + | chr1.3:2550207-2550226 | MS.gene26985:intron | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr1.3:2548164-2548183 | MS.gene26985:intron | 25.0% |
| ! | TGTATACTTAATATGGAAGT+AGG | + | chr1.3:2549152-2549171 | MS.gene26985:intron | 25.0% |
| ! | TGTTCGGATTATTCTAATTA+GGG | + | chr1.3:2547831-2547850 | MS.gene26985:intron | 25.0% |
| ! | TTATTAATAGAAAGTTGGAC+AGG | + | chr1.3:2550206-2550225 | MS.gene26985:intron | 25.0% |
| ! | TTGAATGAATTAAATAGACC+AGG | - | chr1.3:2550114-2550133 | None:intergenic | 25.0% |
| ! | TTGTTCGGATTATTCTAATT+AGG | + | chr1.3:2547830-2547849 | MS.gene26985:intron | 25.0% |
| !! | AAACGTTTGAAACTATGTTT+AGG | + | chr1.3:2548420-2548439 | MS.gene26985:intron | 25.0% |
| !! | ATCATACTCTTTTTGATGTT+TGG | + | chr1.3:2548866-2548885 | MS.gene26985:intron | 25.0% |
| !! | ATTTGGTTAGTTAATCAACA+TGG | + | chr1.3:2550145-2550164 | MS.gene26985:intron | 25.0% |
| !! | GATTTGACTTAACTCTTATT+GGG | + | chr1.3:2549979-2549998 | MS.gene26985:intron | 25.0% |
| !! | TGATTTGACTTAACTCTTAT+TGG | + | chr1.3:2549978-2549997 | MS.gene26985:intron | 25.0% |
| !! | TTTCAGTTTTCAACTTTTGT+TGG | + | chr1.3:2548313-2548332 | MS.gene26985:intron | 25.0% |
| !!! | CATCAAAAAGAGTATGATTT+TGG | - | chr1.3:2548864-2548883 | None:intergenic | 25.0% |
| !!! | TAAAGTGTTAACAACACTTT+TGG | + | chr1.3:2550035-2550054 | MS.gene26985:intron | 25.0% |
| !!! | TCTAAATGTTGTTTTGATAG+TGG | + | chr1.3:2549246-2549265 | MS.gene26985:intron | 25.0% |
| !!! | TGACAGTCATTTTGTATTTA+AGG | - | chr1.3:2549508-2549527 | None:intergenic | 25.0% |
| AAAAATAAGCCAATCCAAAC+GGG | + | chr1.3:2548277-2548296 | MS.gene26985:intron | 30.0% | |
| AAACAGGTAAAAACGGAAAA+CGG | - | chr1.3:2547812-2547831 | None:intergenic | 30.0% | |
| ACGGTGTAGTTATTCAAATT+GGG | + | chr1.3:2549332-2549351 | MS.gene26985:intron | 30.0% | |
| ATAGTTACTATATGTGAACC+TGG | + | chr1.3:2550093-2550112 | MS.gene26985:intron | 30.0% | |
| ATCTTGTCTTGCATATTACA+TGG | + | chr1.3:2550258-2550277 | MS.gene26985:intron | 30.0% | |
| ATGAGAAGATAGTTCAGAAT+TGG | - | chr1.3:2547602-2547621 | None:intergenic | 30.0% | |
| ATTCAAAATAGTTTCCGCTT+GGG | - | chr1.3:2550461-2550480 | None:intergenic | 30.0% | |
| CAAAAATAAGCCAATCCAAA+TGG | - | chr1.3:2548116-2548135 | None:intergenic | 30.0% | |
| CACACACATTTATATACTTC+TGG | - | chr1.3:2549072-2549091 | None:intergenic | 30.0% | |
| CATATGATAGAGATTAGAGA+CGG | + | chr1.3:2549300-2549319 | MS.gene26985:intron | 30.0% | |
| GAAATACTATGATGCTTCTA+TGG | + | chr1.3:2548595-2548614 | MS.gene26985:intron | 30.0% | |
| GACAGTGATTAGAATGAAAT+GGG | + | chr1.3:2548073-2548092 | MS.gene26985:intron | 30.0% | |
| GGGTACAAAAATTATTTCAC+AGG | - | chr1.3:2548973-2548992 | None:intergenic | 30.0% | |
| TAATTGTGATTGAGAGAAGA+TGG | + | chr1.3:2548369-2548388 | MS.gene26985:intron | 30.0% | |
| TACGGTGTAGTTATTCAAAT+TGG | + | chr1.3:2549331-2549350 | MS.gene26985:intron | 30.0% | |
| TATCTTACTTTCATTCTCTG+TGG | + | chr1.3:2549465-2549484 | MS.gene26985:intron | 30.0% | |
| TATTCAAAATAGTTTCCGCT+TGG | - | chr1.3:2550462-2550481 | None:intergenic | 30.0% | |
| TGACAGTGATTAGAATGAAA+TGG | + | chr1.3:2548072-2548091 | MS.gene26985:intron | 30.0% | |
| TGATTTACTTAGCATTGTAG+TGG | + | chr1.3:2549606-2549625 | MS.gene26985:intron | 30.0% | |
| TTAGAATAATCCGAACAAAC+AGG | - | chr1.3:2547828-2547847 | None:intergenic | 30.0% | |
| TTGAATGTCTTGAGAATTTG+AGG | + | chr1.3:2548657-2548676 | MS.gene26985:intron | 30.0% | |
| ! | CAGAAGTATATAAATGTGTG+TGG | + | chr1.3:2549070-2549089 | MS.gene26985:intron | 30.0% |
| !! | ATCACTTTTGAGCTGTTATT+TGG | + | chr1.3:2549117-2549136 | MS.gene26985:intron | 30.0% |
| !! | ATCTAGAGGGAGTATATTTT+CGG | + | chr1.3:2548397-2548416 | MS.gene26985:intron | 30.0% |
| !! | CGGAAACTATTTTGAATATC+AGG | + | chr1.3:2550464-2550483 | MS.gene26985:CDS | 30.0% |
| !! | GATTTGATTTGTTATGCTTG+TGG | + | chr1.3:2547950-2547969 | MS.gene26985:intron | 30.0% |
| !! | GTATGATTTTGGCAAAATCA+CGG | - | chr1.3:2548853-2548872 | None:intergenic | 30.0% |
| !! | TAACTTGCTTGTAGAAAAAC+TGG | + | chr1.3:2549900-2549919 | MS.gene26985:intron | 30.0% |
| !! | TGTTTTGTTACGATCCATTA+TGG | + | chr1.3:2549397-2549416 | MS.gene26985:intron | 30.0% |
| !! | TTCAAGGTTGATGATCATAT+CGG | + | chr1.3:2547634-2547653 | MS.gene26985:CDS | 30.0% |
| !!! | AATTGTAGCTAGGGTTTTTT+AGG | + | chr1.3:2547860-2547879 | MS.gene26985:intron | 30.0% |
| !!! | ATTGTAGCTAGGGTTTTTTA+GGG | + | chr1.3:2547861-2547880 | MS.gene26985:intron | 30.0% |
| !!! | GAGAATTTGAGGTTTTTAGT+TGG | + | chr1.3:2548668-2548687 | MS.gene26985:intron | 30.0% |
| !!! | TGATACTTTTGAGATTGTGA+GGG | + | chr1.3:2550710-2550729 | MS.gene26985:CDS | 30.0% |
| !!! | TTGATACTTTTGAGATTGTG+AGG | + | chr1.3:2550709-2550728 | MS.gene26985:CDS | 30.0% |
| !!! | TTGATGTTTGGTTTTTGACT+TGG | + | chr1.3:2548878-2548897 | MS.gene26985:intron | 30.0% |
| ACAAGCTGCAAAGACATATT+TGG | + | chr1.3:2550509-2550528 | MS.gene26985:CDS | 35.0% | |
| AGAAGATGGAATCAATCTAG+AGG | + | chr1.3:2548383-2548402 | MS.gene26985:intron | 35.0% | |
| AGTTCCGTTGACATTCATTA+GGG | - | chr1.3:2549371-2549390 | None:intergenic | 35.0% | |
| ATATACTTCTGGGTATAGGT+TGG | - | chr1.3:2549061-2549080 | None:intergenic | 35.0% | |
| ATCCATTATGGATGTTCTAG+GGG | + | chr1.3:2549409-2549428 | MS.gene26985:intron | 35.0% | |
| ATGCATAGAGAAATCCTGAA+GGG | + | chr1.3:2549744-2549763 | MS.gene26985:intron | 35.0% | |
| ATGTCATTCTTTGATGCATC+TGG | + | chr1.3:2549539-2549558 | MS.gene26985:intron | 35.0% | |
| CAGTGTTAACAAAAAGGGTT+TGG | - | chr1.3:2548048-2548067 | None:intergenic | 35.0% | |
| CGGTAAGTTTGACAAAATCA+CGG | + | chr1.3:2548782-2548801 | MS.gene26985:intron | 35.0% | |
| GAAAACTGAAACAGACACTA+AGG | - | chr1.3:2548304-2548323 | None:intergenic | 35.0% | |
| GAAGATGGAATCAATCTAGA+GGG | + | chr1.3:2548384-2548403 | MS.gene26985:intron | 35.0% | |
| GAATATCAGGCATTTGCAAT+CGG | + | chr1.3:2550477-2550496 | MS.gene26985:CDS | 35.0% | |
| GATCCATTATGGATGTTCTA+GGG | + | chr1.3:2549408-2549427 | MS.gene26985:intron | 35.0% | |
| GGTAAGTTTGACAAAATCAC+GGG | + | chr1.3:2548783-2548802 | MS.gene26985:intron | 35.0% | |
| TATGATGCTTCTATGGTGTT+TGG | + | chr1.3:2548602-2548621 | MS.gene26985:intron | 35.0% | |
| TCATCAGAAGAAGATCTTCA+AGG | + | chr1.3:2547618-2547637 | MS.gene26985:CDS | 35.0% | |
| TCCGAACAAACAGGTAAAAA+CGG | - | chr1.3:2547819-2547838 | None:intergenic | 35.0% | |
| TGCATTCAGATCTCATGTAA+CGG | - | chr1.3:2547702-2547721 | None:intergenic | 35.0% | |
| TGTAAGATTCAGTGTCCATT+TGG | + | chr1.3:2548098-2548117 | MS.gene26985:intron | 35.0% | |
| TTCACTTTCCCATTACTATG+AGG | - | chr1.3:2549439-2549458 | None:intergenic | 35.0% | |
| ! | AGTTTTCAACTTTTGTTGGC+TGG | + | chr1.3:2548317-2548336 | MS.gene26985:intron | 35.0% |
| ! | CTAATGACACGTTCTACTTT+TGG | - | chr1.3:2548514-2548533 | None:intergenic | 35.0% |
| ! | TAGCTGGATTAGATGAATCA+GGG | + | chr1.3:2550415-2550434 | MS.gene26985:CDS | 35.0% |
| ! | TCTTCTCTTTCAAGGTTTTG+AGG | + | chr1.3:2549566-2549585 | MS.gene26985:intron | 35.0% |
| !! | ACTTTAGGATCTTAACTGAG+TGG | + | chr1.3:2548007-2548026 | MS.gene26985:intron | 35.0% |
| !! | ATGATGTAATTTTGAGTGGC+AGG | + | chr1.3:2550344-2550363 | MS.gene26985:intron | 35.0% |
| !! | TCATTAGTTTCCTCTCCTTT+TGG | + | chr1.3:2548527-2548546 | MS.gene26985:intron | 35.0% |
| !! | TCCGTTTTTACCTGTTTGTT+CGG | + | chr1.3:2547815-2547834 | MS.gene26985:intron | 35.0% |
| !! | TCTCCTTTTGGTCTTTTTTG+CGG | + | chr1.3:2548539-2548558 | MS.gene26985:intron | 35.0% |
| !!! | AGGGTTTTGAAATTGTAGCT+AGG | + | chr1.3:2547850-2547869 | MS.gene26985:intron | 35.0% |
| !!! | GGGTTTTGAAATTGTAGCTA+GGG | + | chr1.3:2547851-2547870 | MS.gene26985:intron | 35.0% |
| AAACAGCATAAATAGGGGAG+GGG | - | chr1.3:2550067-2550086 | None:intergenic | 40.0% | |
| AAGATGCACTCATTGCAACT+AGG | + | chr1.3:2550580-2550599 | MS.gene26985:CDS | 40.0% | |
| AATAGAAAGTTGGACAGGGT+GGG | + | chr1.3:2550211-2550230 | MS.gene26985:intron | 40.0% | |
| AGAAACAGCATAAATAGGGG+AGG | - | chr1.3:2550069-2550088 | None:intergenic | 40.0% | |
| AGATGCACTCATTGCAACTA+GGG | + | chr1.3:2550581-2550600 | MS.gene26985:CDS | 40.0% | |
| ATCTTTGATCAGATCTTCCC+GGG | - | chr1.3:2550565-2550584 | None:intergenic | 40.0% | |
| ATTGTCTAAACTGTCGTGAG+AGG | + | chr1.3:2549668-2549687 | MS.gene26985:intron | 40.0% | |
| CAGTTCCGTTGACATTCATT+AGG | - | chr1.3:2549372-2549391 | None:intergenic | 40.0% | |
| CAGTTTCCTGATCCAAAATG+TGG | - | chr1.3:2550677-2550696 | None:intergenic | 40.0% | |
| CATCTTTGATCAGATCTTCC+CGG | - | chr1.3:2550566-2550585 | None:intergenic | 40.0% | |
| CATGCATAGAGAAATCCTGA+AGG | + | chr1.3:2549743-2549762 | MS.gene26985:intron | 40.0% | |
| CGATCCATTATGGATGTTCT+AGG | + | chr1.3:2549407-2549426 | MS.gene26985:intron | 40.0% | |
| CGGTTGGCAAAAACTAAGTT+TGG | - | chr1.3:2548833-2548852 | None:intergenic | 40.0% | |
| CTTACTTTCATTCTCTGTGG+AGG | + | chr1.3:2549468-2549487 | MS.gene26985:intron | 40.0% | |
| GAAACAGCATAAATAGGGGA+GGG | - | chr1.3:2550068-2550087 | None:intergenic | 40.0% | |
| GATTCAGTGTCCATTTGGAT+TGG | + | chr1.3:2548103-2548122 | MS.gene26985:intron | 40.0% | |
| GCAAAAAAGACCAAAAGGAG+AGG | - | chr1.3:2548540-2548559 | None:intergenic | 40.0% | |
| GCATTCAGATCTCATGTAAC+GGG | - | chr1.3:2547701-2547720 | None:intergenic | 40.0% | |
| TAATAGAAAGTTGGACAGGG+TGG | + | chr1.3:2550210-2550229 | MS.gene26985:intron | 40.0% | |
| TAATATGGAAGTAGGGAGAC+TGG | + | chr1.3:2549160-2549179 | MS.gene26985:intron | 40.0% | |
| TACCCCTAGAACATCCATAA+TGG | - | chr1.3:2549414-2549433 | None:intergenic | 40.0% | |
| TACGCTGTTGTGTTGTCTTA+TGG | + | chr1.3:2549838-2549857 | MS.gene26985:intron | 40.0% | |
| TCCTGATCCAAAATGTGGAA+AGG | - | chr1.3:2550672-2550691 | None:intergenic | 40.0% | |
| TGCACCCTAATGAATGTCAA+CGG | + | chr1.3:2549364-2549383 | MS.gene26985:intron | 40.0% | |
| TGCATAGAGAAATCCTGAAG+GGG | + | chr1.3:2549745-2549764 | MS.gene26985:intron | 40.0% | |
| TGTAGAAAAACTGGCTGAAC+AGG | + | chr1.3:2549909-2549928 | MS.gene26985:intron | 40.0% | |
| TGTCTTCTTGACAAACACGA+CGG | - | chr1.3:2548996-2549015 | None:intergenic | 40.0% | |
| TGTTGTCTTATGGTGTGAAG+TGG | + | chr1.3:2549848-2549867 | MS.gene26985:intron | 40.0% | |
| TTAGAGACGGAGTTAGACTA+CGG | + | chr1.3:2549313-2549332 | MS.gene26985:intron | 40.0% | |
| ! | AGCTGGATTAGATGAATCAG+GGG | + | chr1.3:2550416-2550435 | MS.gene26985:CDS | 40.0% |
| ! | CTCACATTGATGGTCAAGTT+TGG | + | chr1.3:2548901-2548920 | MS.gene26985:intron | 40.0% |
| ! | GTAGCTGGATTAGATGAATC+AGG | + | chr1.3:2550414-2550433 | MS.gene26985:CDS | 40.0% |
| ! | TAACCTAACCTGAGCCTTAT+CGG | - | chr1.3:2547785-2547804 | None:intergenic | 40.0% |
| ! | TCATGTAACGGGAAAGAACA+CGG | - | chr1.3:2547690-2547709 | None:intergenic | 40.0% |
| ! | TTGTTGCTTGTGTGAAATGG+CGG | + | chr1.3:2548762-2548781 | MS.gene26985:intron | 40.0% |
| !! | CTCCTTTTGGTCTTTTTTGC+GGG | + | chr1.3:2548540-2548559 | MS.gene26985:intron | 40.0% |
| !! | GACTTGTTGCTTGTGTGAAA+TGG | + | chr1.3:2548759-2548778 | MS.gene26985:intron | 40.0% |
| !! | GATTTTGGCAAAATCACGGT+TGG | - | chr1.3:2548849-2548868 | None:intergenic | 40.0% |
| !! | TCCTTTTGGTCTTTTTTGCG+GGG | + | chr1.3:2548541-2548560 | MS.gene26985:intron | 40.0% |
| !! | TTTGACTTGGCTCACATTGA+TGG | + | chr1.3:2548891-2548910 | MS.gene26985:intron | 40.0% |
| !!! | CTCTTTCAAGGTTTTGAGGA+GGG | + | chr1.3:2549570-2549589 | MS.gene26985:intron | 40.0% |
| !!! | GTTTGCTGACTCTTGTTTTC+TGG | + | chr1.3:2548732-2548751 | MS.gene26985:intron | 40.0% |
| !!! | TACTTTTGAGATTGTGAGGG+AGG | + | chr1.3:2550713-2550732 | MS.gene26985:CDS | 40.0% |
| !!! | TCTCTTTCAAGGTTTTGAGG+AGG | + | chr1.3:2549569-2549588 | MS.gene26985:intron | 40.0% |
| AAACTGTCGTGAGAGGCTAT+TGG | + | chr1.3:2549675-2549694 | MS.gene26985:intron | 45.0% | |
| AACAGCATAAATAGGGGAGG+GGG | - | chr1.3:2550066-2550085 | None:intergenic | 45.0% | |
| AACCACAGCAATGGTGCATA+CGG | - | chr1.3:2550637-2550656 | None:intergenic | 45.0% | |
| AAGCAAGGTTCAGCAGCAAT+AGG | + | chr1.3:2547532-2547551 | MS.gene26985:CDS | 45.0% | |
| ACCTTGCTTAACTGCTTCCA+TGG | - | chr1.3:2547521-2547540 | None:intergenic | 45.0% | |
| ACGATACCGACGTAACAACA+TGG | + | chr1.3:2547461-2547480 | MS.gene26985:CDS | 45.0% | |
| ACTAGAAGTCCAACGCCATA+AGG | - | chr1.3:2550396-2550415 | None:intergenic | 45.0% | |
| AGGGGTAGACCTCATAGTAA+TGG | + | chr1.3:2549427-2549446 | MS.gene26985:intron | 45.0% | |
| AGTGTCTCTGTTAGTGACTG+TGG | + | chr1.3:2548694-2548713 | MS.gene26985:intron | 45.0% | |
| CTCTATTACAACTGCCCAAG+CGG | + | chr1.3:2550444-2550463 | MS.gene26985:CDS | 45.0% | |
| CTGGAACGTCTTCTCTTTCA+AGG | + | chr1.3:2549558-2549577 | MS.gene26985:intron | 45.0% | |
| CTTAACTGAGTGGCTCACTT+TGG | + | chr1.3:2548017-2548036 | MS.gene26985:intron | 45.0% | |
| GCATAGAGAAATCCTGAAGG+GGG | + | chr1.3:2549746-2549765 | MS.gene26985:intron | 45.0% | |
| GGGGTAGACCTCATAGTAAT+GGG | + | chr1.3:2549428-2549447 | MS.gene26985:intron | 45.0% | |
| GTACAGAAGTTGTCCAACCT+GGG | + | chr1.3:2548567-2548586 | MS.gene26985:intron | 45.0% | |
| GTCTTCTTGACAAACACGAC+GGG | - | chr1.3:2548995-2549014 | None:intergenic | 45.0% | |
| TCATAGTATTTCGCCTACCC+AGG | - | chr1.3:2548587-2548606 | None:intergenic | 45.0% | |
| TCTTCTTGACAAACACGACG+GGG | - | chr1.3:2548994-2549013 | None:intergenic | 45.0% | |
| ! | GCCTTTCCACATTTTGGATC+AGG | + | chr1.3:2550668-2550687 | MS.gene26985:CDS | 45.0% |
| ! | TGGTGAGCCTTTCCACATTT+TGG | + | chr1.3:2550662-2550681 | MS.gene26985:CDS | 45.0% |
| !! | CAAAAGTATTAGCCCCCTTC+AGG | - | chr1.3:2549761-2549780 | None:intergenic | 45.0% |
| !! | CCTTTTGGTCTTTTTTGCGG+GGG | + | chr1.3:2548542-2548561 | MS.gene26985:intron | 45.0% |
| !! | TAGTGGTCTATCGACTCGAT+AGG | + | chr1.3:2549623-2549642 | MS.gene26985:intron | 45.0% |
| !!! | GAACCACGTGAGTTTTGGAT+CGG | - | chr1.3:2547561-2547580 | None:intergenic | 45.0% |
| AAAGTTGGACAGGGTGGGTA+TGG | + | chr1.3:2550216-2550235 | MS.gene26985:intron | 50.0% | |
| AAGTTGGACAGGGTGGGTAT+GGG | + | chr1.3:2550217-2550236 | MS.gene26985:intron | 50.0% | |
| ACAGACACTAAGGACCCGTT+TGG | - | chr1.3:2548294-2548313 | None:intergenic | 50.0% | |
| ACCAACTCCAACCACAGCAA+TGG | - | chr1.3:2550646-2550665 | None:intergenic | 50.0% | |
| ACCATTGCTGTGGTTGGAGT+TGG | + | chr1.3:2550642-2550661 | MS.gene26985:CDS | 50.0% | |
| AGAAGTTGTCCAACCTGGGT+AGG | + | chr1.3:2548571-2548590 | MS.gene26985:intron | 50.0% | |
| AGGTTTGCACTCAGCGATCA+TGG | + | chr1.3:2550364-2550383 | MS.gene26985:intron | 50.0% | |
| AGTATTTCGCCTACCCAGGT+TGG | - | chr1.3:2548583-2548602 | None:intergenic | 50.0% | |
| CACTAAGGACCCGTTTGGAT+TGG | - | chr1.3:2548289-2548308 | None:intergenic | 50.0% | |
| CCCCCGCAAAAAAGACCAAA+AGG | - | chr1.3:2548545-2548564 | None:intergenic | 50.0% | |
| CCTTGCAAGGTGAAAAGCTC+AGG | + | chr1.3:2550607-2550626 | MS.gene26985:CDS | 50.0% | |
| CGACGTAACAACATGGTCAC+CGG | + | chr1.3:2547468-2547487 | MS.gene26985:CDS | 50.0% | |
| CGCTTGGGCAGTTGTAATAG+AGG | - | chr1.3:2550446-2550465 | None:intergenic | 50.0% | |
| CGGTGACCATGTTGTTACGT+CGG | - | chr1.3:2547470-2547489 | None:intergenic | 50.0% | |
| CTGAACGACGAGTCTACCAA+CGG | - | chr1.3:2547758-2547777 | None:intergenic | 50.0% | |
| CTTCTTGACAAACACGACGG+GGG | - | chr1.3:2548993-2549012 | None:intergenic | 50.0% | |
| GCCATGGAAGCAGTTAAGCA+AGG | + | chr1.3:2547517-2547536 | MS.gene26985:CDS | 50.0% | |
| GCTTCTGGTGCAGATCAAAG+TGG | + | chr1.3:2550795-2550814 | MS.gene26985:CDS | 50.0% | |
| GGTACAGAAGTTGTCCAACC+TGG | + | chr1.3:2548566-2548585 | MS.gene26985:intron | 50.0% | |
| GTATGCACCATTGCTGTGGT+TGG | + | chr1.3:2550636-2550655 | MS.gene26985:CDS | 50.0% | |
| GTCTCTGTTAGTGACTGTGG+TGG | + | chr1.3:2548697-2548716 | MS.gene26985:intron | 50.0% | |
| TATGAATCTCCGCTTCCCGT+TGG | + | chr1.3:2547739-2547758 | MS.gene26985:CDS | 50.0% | |
| TCTCCATTGGAGAACCACCT+TGG | - | chr1.3:2550836-2550855 | None:intergenic | 50.0% | |
| TCTCCGATCCAAAACTCACG+TGG | + | chr1.3:2547555-2547574 | MS.gene26985:CDS | 50.0% | |
| TGAACGACGAGTCTACCAAC+GGG | - | chr1.3:2547757-2547776 | None:intergenic | 50.0% | |
| TGACCAAGGTGGTTCTCCAA+TGG | + | chr1.3:2550830-2550849 | MS.gene26985:CDS | 50.0% | |
| TTTGATCAGATCTTCCCGGG+AGG | - | chr1.3:2550562-2550581 | None:intergenic | 50.0% | |
| ! | CCTGAGCTTTTCACCTTGCA+AGG | - | chr1.3:2550610-2550629 | None:intergenic | 50.0% |
| !! | AGATCAAAGTGGTGCTGGTG+GGG | + | chr1.3:2550806-2550825 | MS.gene26985:CDS | 50.0% |
| !! | CAGATCAAAGTGGTGCTGGT+GGG | + | chr1.3:2550805-2550824 | MS.gene26985:CDS | 50.0% |
| !! | CGATCATGGAAGCGTCCTTA+TGG | + | chr1.3:2550378-2550397 | MS.gene26985:CDS | 50.0% |
| !!! | GGTTTTGAGGAGGGAAACAG+TGG | + | chr1.3:2549579-2549598 | MS.gene26985:intron | 50.0% |
| !!! | TTTGGTCTTTTTTGCGGGGG+AGG | + | chr1.3:2548545-2548564 | MS.gene26985:intron | 50.0% |
| ACAACTTCACAGCCTCCTCC+CGG | + | chr1.3:2550544-2550563 | MS.gene26985:CDS | 55.0% | |
| ACGAGTCTACCAACGGGAAG+CGG | - | chr1.3:2547751-2547770 | None:intergenic | 55.0% | |
| ACGGGAAAGAACACGGCCAT+CGG | - | chr1.3:2547683-2547702 | None:intergenic | 55.0% | |
| AGTTGGACAGGGTGGGTATG+GGG | + | chr1.3:2550218-2550237 | MS.gene26985:intron | 55.0% | |
| CGTAACAACATGGTCACCGG+CGG | + | chr1.3:2547471-2547490 | MS.gene26985:CDS | 55.0% | |
| CTCCGTATGCACCATTGCTG+TGG | + | chr1.3:2550632-2550651 | MS.gene26985:CDS | 55.0% | |
| CTTCCAGGTGGAATACGCCA+TGG | + | chr1.3:2547501-2547520 | MS.gene26985:CDS | 55.0% | |
| CTTCCATGGCGTATTCCACC+TGG | - | chr1.3:2547507-2547526 | None:intergenic | 55.0% | |
| GAAGTAGGGAGACTGGTGTG+CGG | + | chr1.3:2549167-2549186 | MS.gene26985:intron | 55.0% | |
| GCAACTAGGGAGTCCTTGCA+AGG | + | chr1.3:2550594-2550613 | MS.gene26985:CDS | 55.0% | |
| GGTGCAGATCAAAGTGGTGC+TGG | + | chr1.3:2550801-2550820 | MS.gene26985:CDS | 55.0% | |
| GTAACAACATGGTCACCGGC+GGG | + | chr1.3:2547472-2547491 | MS.gene26985:CDS | 55.0% | |
| TCGCCGATAAGGCTCAGGTT+AGG | + | chr1.3:2547779-2547798 | MS.gene26985:intron | 55.0% | |
| TGCACCAGAAGCCTGATCTG+TGG | - | chr1.3:2550787-2550806 | None:intergenic | 55.0% | |
| ! | CGCGAGAACCACGTGAGTTT+TGG | - | chr1.3:2547566-2547585 | None:intergenic | 55.0% |
| ! | GCAGATCAAAGTGGTGCTGG+TGG | + | chr1.3:2550804-2550823 | MS.gene26985:CDS | 55.0% |
| ! | GGCGTTGGACTTCTAGTAGC+TGG | + | chr1.3:2550399-2550418 | MS.gene26985:CDS | 55.0% |
| !! | TGGAAGCGTCCTTATGGCGT+TGG | + | chr1.3:2550384-2550403 | MS.gene26985:CDS | 55.0% |
| ACCTGGAAGAGTCTTCCCGC+CGG | - | chr1.3:2547490-2547509 | None:intergenic | 60.0% | |
| AGCTGCACCTGCTGAACCTG+AGG | + | chr1.3:2550740-2550759 | MS.gene26985:CDS | 60.0% | |
| CAACTTCACAGCCTCCTCCC+GGG | + | chr1.3:2550545-2550564 | MS.gene26985:CDS | 60.0% | |
| CATATCGGCGTTGCCATCGC+CGG | + | chr1.3:2547649-2547668 | MS.gene26985:CDS | 60.0% | |
| CGTCGTTCAGCTCGCCGATA+AGG | + | chr1.3:2547768-2547787 | MS.gene26985:CDS | 60.0% | |
| GATCAGATCTTCCCGGGAGG+AGG | - | chr1.3:2550559-2550578 | None:intergenic | 60.0% | |
| GCAGGATGCTGCCACAGATC+AGG | + | chr1.3:2550773-2550792 | MS.gene26985:CDS | 60.0% | |
| GCTGCCACAGATCAGGCTTC+TGG | + | chr1.3:2550780-2550799 | MS.gene26985:CDS | 60.0% | |
| GGAAAGAACACGGCCATCGG+CGG | - | chr1.3:2547680-2547699 | None:intergenic | 60.0% | |
| GTTGGACAGGGTGGGTATGG+GGG | + | chr1.3:2550219-2550238 | MS.gene26985:intron | 60.0% | |
| TCAGCTCGCCGATAAGGCTC+AGG | + | chr1.3:2547774-2547793 | MS.gene26985:CDS | 60.0% | |
| TTGGACAGGGTGGGTATGGG+GGG | + | chr1.3:2550220-2550239 | MS.gene26985:intron | 60.0% | |
| ACCGGCGGGAAGACTCTTCC+AGG | + | chr1.3:2547486-2547505 | MS.gene26985:CDS | 65.0% | |
| ACCTGAGGCTGCAGCTGAGC+AGG | + | chr1.3:2550755-2550774 | MS.gene26985:CDS | 65.0% | |
| GCTGCAGCCTCAGGTTCAGC+AGG | - | chr1.3:2550750-2550769 | None:intergenic | 65.0% | |
| GGCGGGAAGACTCTTCCAGG+TGG | + | chr1.3:2547489-2547508 | MS.gene26985:CDS | 65.0% | |
| TCCTGCTCAGCTGCAGCCTC+AGG | - | chr1.3:2550759-2550778 | None:intergenic | 65.0% | |
| TGGACAGGGTGGGTATGGGG+GGG | + | chr1.3:2550221-2550240 | MS.gene26985:intron | 65.0% | |
| ACGGCCATCGGCGGTGAGAC+CGG | - | chr1.3:2547671-2547690 | None:intergenic | 70.0% | |
| ATCGCCGGTCTCACCGCCGA+TGG | + | chr1.3:2547664-2547683 | MS.gene26985:CDS | 70.0% | |
| ATCGGCGGTGAGACCGGCGA+TGG | - | chr1.3:2547665-2547684 | None:intergenic | 70.0% | |
| GCTGGTGGGGCTGACCAAGG+TGG | + | chr1.3:2550819-2550838 | MS.gene26985:CDS | 70.0% | |
| !! | GGTGCTGGTGGGGCTGACCA+AGG | + | chr1.3:2550816-2550835 | MS.gene26985:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2547445 | 2550860 | 2547445 | ID=MS.gene26985 |
| chr1.3 | mRNA | 2547445 | 2550860 | 2547445 | ID=MS.gene26985.t1;Parent=MS.gene26985 |
| chr1.3 | exon | 2547445 | 2547795 | 2547445 | ID=MS.gene26985.t1.exon1;Parent=MS.gene26985.t1 |
| chr1.3 | CDS | 2547445 | 2547795 | 2547445 | ID=cds.MS.gene26985.t1;Parent=MS.gene26985.t1 |
| chr1.3 | exon | 2550366 | 2550860 | 2550366 | ID=MS.gene26985.t1.exon2;Parent=MS.gene26985.t1 |
| chr1.3 | CDS | 2550366 | 2550860 | 2550366 | ID=cds.MS.gene26985.t1;Parent=MS.gene26985.t1 |
| Gene Sequence |
| Protein sequence |
