Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27247.t1 | XP_013466130.1 | 100 | 241 | 0 | 0 | 1 | 241 | 1 | 241 | 3.20E-133 | 484.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27247.t1 | P34066 | 85.9 | 241 | 34 | 0 | 1 | 241 | 1 | 241 | 8.5e-119 | 427.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27247.t1 | I3RZQ6 | 100.0 | 241 | 0 | 0 | 1 | 241 | 1 | 241 | 2.3e-133 | 484.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057144 | MS.gene27247 | 0.803051 | 4.19E-49 | -1.69E-46 |
| MS.gene057145 | MS.gene27247 | 0.804162 | 2.47E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27247.t1 | MTR_1g022410 | 97.887 | 284 | 3 | 1 | 1 | 281 | 1 | 284 | 0.0 | 573 |
| MS.gene27247.t1 | MTR_4g012740 | 78.571 | 322 | 25 | 3 | 1 | 281 | 232 | 550 | 2.45e-163 | 465 |
| MS.gene27247.t1 | MTR_4g012740 | 64.773 | 88 | 16 | 2 | 1 | 73 | 1 | 88 | 1.48e-24 | 103 |
| MS.gene27247.t1 | MTR_4g012740 | 63.636 | 88 | 17 | 2 | 1 | 73 | 78 | 165 | 2.13e-24 | 102 |
| MS.gene27247.t1 | MTR_4g012740 | 63.636 | 88 | 17 | 2 | 1 | 73 | 155 | 242 | 2.13e-24 | 102 |
| MS.gene27247.t1 | MTR_4g057090 | 70.175 | 285 | 55 | 4 | 1 | 281 | 83 | 341 | 6.53e-124 | 357 |
| MS.gene27247.t1 | MTR_3g113730 | 87.805 | 164 | 18 | 1 | 118 | 281 | 4 | 165 | 3.77e-103 | 298 |
| MS.gene27247.t1 | MTR_1g112250 | 45.902 | 183 | 94 | 2 | 1 | 178 | 3 | 185 | 7.61e-47 | 157 |
| MS.gene27247.t1 | MTR_7g070070 | 38.785 | 214 | 125 | 3 | 5 | 214 | 4 | 215 | 3.96e-43 | 147 |
| MS.gene27247.t1 | MTR_5g016590 | 38.785 | 214 | 125 | 3 | 5 | 214 | 4 | 215 | 6.34e-43 | 147 |
| MS.gene27247.t1 | MTR_0167s0060 | 35.111 | 225 | 141 | 3 | 1 | 223 | 1 | 222 | 2.17e-41 | 143 |
| MS.gene27247.t1 | MTR_6g024135 | 40.838 | 191 | 108 | 3 | 6 | 193 | 8 | 196 | 1.02e-38 | 136 |
| MS.gene27247.t1 | MTR_2g060830 | 34.348 | 230 | 145 | 5 | 6 | 230 | 9 | 237 | 1.62e-38 | 135 |
| MS.gene27247.t1 | MTR_8g464460 | 35.217 | 230 | 143 | 5 | 6 | 230 | 9 | 237 | 2.25e-38 | 135 |
| MS.gene27247.t1 | MTR_8g075320 | 37.736 | 212 | 123 | 4 | 5 | 210 | 3 | 211 | 8.29e-38 | 134 |
| MS.gene27247.t1 | MTR_2g016050 | 35.681 | 213 | 128 | 4 | 4 | 210 | 2 | 211 | 4.33e-35 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27247.t1 | AT1G47250 | 78.445 | 283 | 53 | 2 | 1 | 281 | 1 | 277 | 6.24e-160 | 446 |
| MS.gene27247.t1 | AT5G42790 | 86.134 | 238 | 33 | 0 | 1 | 238 | 1 | 238 | 6.61e-159 | 443 |
| MS.gene27247.t1 | AT1G53850 | 38.819 | 237 | 135 | 4 | 1 | 232 | 3 | 234 | 2.41e-46 | 155 |
| MS.gene27247.t1 | AT1G53850 | 38.819 | 237 | 135 | 4 | 1 | 232 | 3 | 234 | 2.41e-46 | 155 |
| MS.gene27247.t1 | AT3G14290 | 45.355 | 183 | 95 | 2 | 1 | 178 | 3 | 185 | 2.44e-46 | 155 |
| MS.gene27247.t1 | AT3G22110 | 36.017 | 236 | 141 | 4 | 5 | 232 | 4 | 237 | 2.43e-43 | 148 |
| MS.gene27247.t1 | AT1G16470 | 36.444 | 225 | 138 | 3 | 1 | 223 | 1 | 222 | 2.39e-40 | 140 |
| MS.gene27247.t1 | AT1G16470 | 36.444 | 225 | 138 | 3 | 1 | 223 | 1 | 222 | 2.39e-40 | 140 |
| MS.gene27247.t1 | AT1G79210 | 36.000 | 225 | 139 | 3 | 1 | 223 | 1 | 222 | 7.19e-40 | 139 |
| MS.gene27247.t1 | AT1G79210 | 36.000 | 225 | 139 | 3 | 1 | 223 | 1 | 222 | 7.19e-40 | 139 |
| MS.gene27247.t1 | AT1G79210 | 36.000 | 225 | 139 | 3 | 1 | 223 | 1 | 222 | 7.19e-40 | 139 |
| MS.gene27247.t1 | AT5G35590 | 34.348 | 230 | 145 | 5 | 6 | 230 | 9 | 237 | 1.95e-38 | 135 |
| MS.gene27247.t1 | AT5G66140 | 38.208 | 212 | 122 | 4 | 5 | 210 | 3 | 211 | 4.08e-37 | 132 |
| MS.gene27247.t1 | AT2G05840 | 34.348 | 230 | 145 | 5 | 6 | 230 | 9 | 237 | 4.32e-37 | 132 |
| MS.gene27247.t1 | AT3G51260 | 37.264 | 212 | 124 | 4 | 5 | 210 | 3 | 211 | 5.50e-36 | 129 |
| MS.gene27247.t1 | AT3G51260 | 37.264 | 212 | 124 | 4 | 5 | 210 | 3 | 211 | 6.42e-36 | 129 |
| MS.gene27247.t1 | AT2G05840 | 36.181 | 199 | 123 | 3 | 6 | 200 | 9 | 207 | 1.40e-35 | 127 |
| MS.gene27247.t1 | AT2G27020 | 37.895 | 190 | 115 | 2 | 6 | 193 | 8 | 196 | 8.12e-35 | 126 |
| MS.gene27247.t1 | AT2G05840 | 36.170 | 188 | 116 | 3 | 6 | 189 | 9 | 196 | 1.18e-33 | 122 |
| MS.gene27247.t1 | AT2G27020 | 37.895 | 190 | 115 | 2 | 6 | 193 | 110 | 298 | 1.77e-33 | 125 |
| MS.gene27247.t1 | AT4G15165 | 33.654 | 208 | 87 | 7 | 5 | 204 | 4 | 168 | 2.35e-25 | 100 |
Find 83 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGAGCCTTTCCACATTT+TGG | 0.215333 | 1.1:+1799800 | MS.gene27247:CDS |
| CGCGAGAACCACGTGAGTTT+TGG | 0.220139 | 1.1:-1796727 | None:intergenic |
| ACAAGCTGCAAAGACATATT+TGG | 0.303194 | 1.1:+1799647 | MS.gene27247:CDS |
| TCCTGCTCAGCTGCAGCCTC+AGG | 0.321152 | 1.1:-1799894 | None:intergenic |
| TAACCTAACCTGAGCCTTAT+CGG | 0.340591 | 1.1:-1796946 | None:intergenic |
| GCTGCCACAGATCAGGCTTC+TGG | 0.352014 | 1.1:+1799918 | MS.gene27247:CDS |
| CGATCATGGAAGCGTCCTTA+TGG | 0.372743 | 1.1:+1799516 | MS.gene27247:CDS |
| GTAGCTGGATTAGATGAATC+AGG | 0.390011 | 1.1:+1799552 | MS.gene27247:CDS |
| ATGAGAAGAGAGTTCAGAAT+TGG | 0.397456 | 1.1:-1796763 | None:intergenic |
| GGCGTTGGACTTCTAGTAGC+TGG | 0.403744 | 1.1:+1799537 | MS.gene27247:CDS |
| CGCTTGGGCAGTTGTAATAG+AGG | 0.407257 | 1.1:-1799581 | None:intergenic |
| GCTGCAGCCTCAGGTTCAGC+AGG | 0.411570 | 1.1:-1799885 | None:intergenic |
| ACCTGAGGCTGCAGCTGAGC+AGG | 0.426509 | 1.1:+1799893 | MS.gene27247:CDS |
| TCATCAGAAGAAGATCTTCA+AGG | 0.432131 | 1.1:+1796782 | MS.gene27247:CDS |
| GCAGGATGCTGCCACAGATC+AGG | 0.446173 | 1.1:+1799911 | MS.gene27247:CDS |
| TTAAATTATCAAATCTCCAT+TGG | 0.446472 | 1.1:-1799984 | None:intergenic |
| AAGCAAGGTTCAGCAGCAAT+AGG | 0.446969 | 1.1:+1796696 | MS.gene27247:CDS |
| ACCGGCGGGAAGACTCTTCC+AGG | 0.447398 | 1.1:+1796650 | MS.gene27247:CDS |
| CATCTTTGATCAGATCTTCC+CGG | 0.448900 | 1.1:-1799701 | None:intergenic |
| CAGATCAAAGTGGTGCTGGT+GGG | 0.452356 | 1.1:+1799943 | MS.gene27247:CDS |
| CCTTGCAAGGTGAAAAGCTC+AGG | 0.463589 | 1.1:+1799745 | MS.gene27247:CDS |
| GCATTCAGATCTCATGTAAC+GGG | 0.468182 | 1.1:-1796862 | None:intergenic |
| GATCAGATCTTCCCGGGAGG+AGG | 0.468370 | 1.1:-1799694 | None:intergenic |
| ACGGCCATCGGCGGTGAGAC+CGG | 0.470971 | 1.1:-1796832 | None:intergenic |
| GGTGCTGGTGGGGCTGACCA+AGG | 0.471608 | 1.1:+1799954 | MS.gene27247:CDS |
| GCAGATCAAAGTGGTGCTGG+TGG | 0.482449 | 1.1:+1799942 | MS.gene27247:CDS |
| CGTCGTTCAGCTCGCCGATA+AGG | 0.485800 | 1.1:+1796932 | MS.gene27247:CDS |
| ATTCAAAATAGTTTCCGCTT+GGG | 0.489662 | 1.1:-1799596 | None:intergenic |
| ACTAGAAGTCCAACGCCATA+AGG | 0.491926 | 1.1:-1799531 | None:intergenic |
| AGGTTTGCACTCAGCGATCA+TGG | 0.494067 | 1.1:+1799502 | MS.gene27247:intron |
| ACAACTTCACAGCCTCCTCC+CGG | 0.497935 | 1.1:+1799682 | MS.gene27247:CDS |
| GAATATCAGGCATTTGCAAT+CGG | 0.498552 | 1.1:+1799615 | MS.gene27247:CDS |
| CTTCCATGGCGTATTCCACC+TGG | 0.500589 | 1.1:-1796668 | None:intergenic |
| TATTCAAAATAGTTTCCGCT+TGG | 0.508568 | 1.1:-1799597 | None:intergenic |
| ACCATTGCTGTGGTTGGAGT+TGG | 0.514251 | 1.1:+1799780 | MS.gene27247:CDS |
| TTCAAGGTTGATGATCATAT+CGG | 0.515192 | 1.1:+1796798 | MS.gene27247:CDS |
| ATCTTTGATCAGATCTTCCC+GGG | 0.521887 | 1.1:-1799700 | None:intergenic |
| AAGATGCACTCATTGCAACT+AGG | 0.529448 | 1.1:+1799718 | MS.gene27247:CDS |
| AGATCAAAGTGGTGCTGGTG+GGG | 0.531118 | 1.1:+1799944 | MS.gene27247:CDS |
| GGTGCAGATCAAAGTGGTGC+TGG | 0.531835 | 1.1:+1799939 | MS.gene27247:CDS |
| TGGAAGCGTCCTTATGGCGT+TGG | 0.534162 | 1.1:+1799522 | MS.gene27247:CDS |
| AACCACAGCAATGGTGCATA+CGG | 0.536605 | 1.1:-1799772 | None:intergenic |
| CTCTATTACAACTGCCCAAG+CGG | 0.540260 | 1.1:+1799582 | MS.gene27247:CDS |
| ACGAGTCTACCAACGGGAAG+CGG | 0.541672 | 1.1:-1796912 | None:intergenic |
| AGATGCACTCATTGCAACTA+GGG | 0.552459 | 1.1:+1799719 | MS.gene27247:CDS |
| TCAGCTCGCCGATAAGGCTC+AGG | 0.552948 | 1.1:+1796938 | MS.gene27247:CDS |
| CATATCGGCGTTGCCATCGC+CGG | 0.553468 | 1.1:+1796813 | MS.gene27247:CDS |
| GTATGCACCATTGCTGTGGT+TGG | 0.557714 | 1.1:+1799774 | MS.gene27247:CDS |
| ATCGCCGGTCTCACCGCCGA+TGG | 0.557766 | 1.1:+1796828 | MS.gene27247:CDS |
| ACCTTGCTTAACTGCTTCCA+TGG | 0.560856 | 1.1:-1796682 | None:intergenic |
| TGCATTCAGATCTCATGTAA+CGG | 0.564752 | 1.1:-1796863 | None:intergenic |
| CGACGTAACAACATGGTCAC+CGG | 0.568536 | 1.1:+1796632 | MS.gene27247:CDS |
| TGAACGACGAGTCTACCAAC+GGG | 0.572203 | 1.1:-1796918 | None:intergenic |
| TAGCTGGATTAGATGAATCA+GGG | 0.572392 | 1.1:+1799553 | MS.gene27247:CDS |
| ACGGGAAAGAACACGGCCAT+CGG | 0.576909 | 1.1:-1796844 | None:intergenic |
| CAGTTTCCTGATCCAAAATG+TGG | 0.582560 | 1.1:-1799812 | None:intergenic |
| TATGAATCTCCGCTTCCCGT+TGG | 0.585267 | 1.1:+1796903 | MS.gene27247:CDS |
| AGCTGCACCTGCTGAACCTG+AGG | 0.586152 | 1.1:+1799878 | MS.gene27247:CDS |
| CAACTTCACAGCCTCCTCCC+GGG | 0.586785 | 1.1:+1799683 | MS.gene27247:CDS |
| TGACCAAGGTGGTTCTCCAA+TGG | 0.586988 | 1.1:+1799968 | MS.gene27247:CDS |
| ATCGGCGGTGAGACCGGCGA+TGG | 0.592757 | 1.1:-1796826 | None:intergenic |
| TCCTGATCCAAAATGTGGAA+AGG | 0.593184 | 1.1:-1799807 | None:intergenic |
| ACCAACTCCAACCACAGCAA+TGG | 0.594452 | 1.1:-1799781 | None:intergenic |
| GCTGGTGGGGCTGACCAAGG+TGG | 0.603851 | 1.1:+1799957 | MS.gene27247:CDS |
| CTTCCAGGTGGAATACGCCA+TGG | 0.612270 | 1.1:+1796665 | MS.gene27247:CDS |
| CTCCGTATGCACCATTGCTG+TGG | 0.615712 | 1.1:+1799770 | MS.gene27247:CDS |
| GCAACTAGGGAGTCCTTGCA+AGG | 0.618439 | 1.1:+1799732 | MS.gene27247:CDS |
| TCTCCATTGGAGAACCACCT+TGG | 0.619130 | 1.1:-1799971 | None:intergenic |
| ACCTGGAAGAGTCTTCCCGC+CGG | 0.625765 | 1.1:-1796651 | None:intergenic |
| GTAACAACATGGTCACCGGC+GGG | 0.626802 | 1.1:+1796636 | MS.gene27247:CDS |
| CGTAACAACATGGTCACCGG+CGG | 0.638962 | 1.1:+1796635 | MS.gene27247:CDS |
| GGAAAGAACACGGCCATCGG+CGG | 0.645115 | 1.1:-1796841 | None:intergenic |
| TGCACCAGAAGCCTGATCTG+TGG | 0.645294 | 1.1:-1799922 | None:intergenic |
| TCATGTAACGGGAAAGAACA+CGG | 0.645339 | 1.1:-1796851 | None:intergenic |
| CTGAACGACGAGTCTACCAA+CGG | 0.653690 | 1.1:-1796919 | None:intergenic |
| ACGATACCGACGTAACAACA+TGG | 0.654506 | 1.1:+1796625 | MS.gene27247:CDS |
| GCCATGGAAGCAGTTAAGCA+AGG | 0.656151 | 1.1:+1796681 | MS.gene27247:CDS |
| AGCTGGATTAGATGAATCAG+GGG | 0.660204 | 1.1:+1799554 | MS.gene27247:CDS |
| CGGTGACCATGTTGTTACGT+CGG | 0.692398 | 1.1:-1796631 | None:intergenic |
| GCTTCTGGTGCAGATCAAAG+TGG | 0.697173 | 1.1:+1799933 | MS.gene27247:CDS |
| GGCGGGAAGACTCTTCCAGG+TGG | 0.706418 | 1.1:+1796653 | MS.gene27247:CDS |
| TCTCCGATCCAAAACTCACG+TGG | 0.728289 | 1.1:+1796719 | MS.gene27247:CDS |
| TTTGATCAGATCTTCCCGGG+AGG | 0.729135 | 1.1:-1799697 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAAATTAAGTAATTTTAA+TGG | + | chr1.1:1797072-1797091 | MS.gene27247:intron | 10.0% |
| !! | AAATAATAACAAAATCAAAC+AGG | - | chr1.1:1797805-1797824 | None:intergenic | 15.0% |
| !! | ATTCAATAAACTAAAACATT+TGG | + | chr1.1:1799266-1799285 | MS.gene27247:intron | 15.0% |
| !! | TTCTCTAATGTTTATTATAT+AGG | + | chr1.1:1797634-1797653 | MS.gene27247:intron | 15.0% |
| !!! | ACTATTTTGTATACTTAATA+TGG | + | chr1.1:1798284-1798303 | MS.gene27247:intron | 15.0% |
| !! | AAACATTAGAGAATACATTT+CGG | - | chr1.1:1797627-1797646 | None:intergenic | 20.0% |
| !! | AAATACAGTGTTAACAAAAA+GGG | - | chr1.1:1797219-1797238 | None:intergenic | 20.0% |
| !! | ATATAGAAACAGCATAAATA+GGG | - | chr1.1:1799211-1799230 | None:intergenic | 20.0% |
| !! | ATATTACATGGAAAAGAATA+AGG | + | chr1.1:1799408-1799427 | MS.gene27247:intron | 20.0% |
| !! | CAAAATTACATCATAAATAC+TGG | - | chr1.1:1799476-1799495 | None:intergenic | 20.0% |
| !! | TATATAGAAACAGCATAAAT+AGG | - | chr1.1:1799212-1799231 | None:intergenic | 20.0% |
| !! | TTTAACTCAGTAATTCAATT+AGG | + | chr1.1:1797050-1797069 | MS.gene27247:intron | 20.0% |
| !!! | ATTTATGATGTAATTTTGAG+TGG | + | chr1.1:1799478-1799497 | MS.gene27247:intron | 20.0% |
| !!! | GTGTTTTATTAATAGAAAGT+TGG | + | chr1.1:1799339-1799358 | MS.gene27247:intron | 20.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | + | chr1.1:1797442-1797461 | MS.gene27247:intron | 25.0% |
| ! | AAAATACTATGATGCTTCTA+TGG | + | chr1.1:1797761-1797780 | MS.gene27247:intron | 25.0% |
| ! | ACACACATTTATATACTTCT+GGG | - | chr1.1:1798210-1798229 | None:intergenic | 25.0% |
| ! | AGGTACAAAAATTATTTCAC+AGG | - | chr1.1:1798112-1798131 | None:intergenic | 25.0% |
| ! | ATTTATATACTTCTGGGTAT+AGG | - | chr1.1:1798204-1798223 | None:intergenic | 25.0% |
| ! | CAAATACAGTGTTAACAAAA+AGG | - | chr1.1:1797220-1797239 | None:intergenic | 25.0% |
| ! | GTATACTTAATATGGAAGTA+GGG | + | chr1.1:1798292-1798311 | MS.gene27247:intron | 25.0% |
| ! | TAGTCGAGATTATTTACTTT+AGG | + | chr1.1:1797158-1797177 | MS.gene27247:intron | 25.0% |
| ! | TATAGAAACAGCATAAATAG+GGG | - | chr1.1:1799210-1799229 | None:intergenic | 25.0% |
| ! | TATTAATAGAAAGTTGGACA+GGG | + | chr1.1:1799345-1799364 | MS.gene27247:intron | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr1.1:1797330-1797349 | MS.gene27247:intron | 25.0% |
| ! | TGTATACTTAATATGGAAGT+AGG | + | chr1.1:1798291-1798310 | MS.gene27247:intron | 25.0% |
| ! | TGTTCGGATTATTCTAATTA+GGG | + | chr1.1:1796997-1797016 | MS.gene27247:intron | 25.0% |
| ! | TTATTAATAGAAAGTTGGAC+AGG | + | chr1.1:1799344-1799363 | MS.gene27247:intron | 25.0% |
| ! | TTGAATGAATTAAATAGACC+AGG | - | chr1.1:1799252-1799271 | None:intergenic | 25.0% |
| ! | TTGTTCGGATTATTCTAATT+AGG | + | chr1.1:1796996-1797015 | MS.gene27247:intron | 25.0% |
| !! | AAACGTTTGAAACTATGTTT+AGG | + | chr1.1:1797586-1797605 | MS.gene27247:intron | 25.0% |
| !! | ATCATACTCTTTTTGATGTT+TGG | + | chr1.1:1798032-1798051 | MS.gene27247:intron | 25.0% |
| !! | ATTTGGTTAGTTAATCAACA+TGG | + | chr1.1:1799283-1799302 | MS.gene27247:intron | 25.0% |
| !! | GATTTGACTTAACTCTTATT+GGG | + | chr1.1:1799117-1799136 | MS.gene27247:intron | 25.0% |
| !! | TGATTTGACTTAACTCTTAT+TGG | + | chr1.1:1799116-1799135 | MS.gene27247:intron | 25.0% |
| !! | TTTCAGTTTTCAACTTTTGT+TGG | + | chr1.1:1797479-1797498 | MS.gene27247:intron | 25.0% |
| !!! | CATCAAAAAGAGTATGATTT+TGG | - | chr1.1:1798030-1798049 | None:intergenic | 25.0% |
| !!! | TAAAGTGTTAACAACACTTT+TGG | + | chr1.1:1799173-1799192 | MS.gene27247:intron | 25.0% |
| !!! | TGACAGTCATTTTGTATTTA+AGG | - | chr1.1:1798647-1798666 | None:intergenic | 25.0% |
| !!! | TGTAAATGTTGTTTTGATAG+TGG | + | chr1.1:1798385-1798404 | MS.gene27247:intron | 25.0% |
| AAAAATAAGCCAATCCAAAC+GGG | + | chr1.1:1797443-1797462 | MS.gene27247:intron | 30.0% | |
| ACGGTGTAGTTATTCAAATT+GGG | + | chr1.1:1798471-1798490 | MS.gene27247:intron | 30.0% | |
| ATAGTTACTATATGTGAACC+TGG | + | chr1.1:1799231-1799250 | MS.gene27247:intron | 30.0% | |
| ATCTTGTCTTGCATATTACA+TGG | + | chr1.1:1799396-1799415 | MS.gene27247:intron | 30.0% | |
| ATTCAAAATAGTTTCCGCTT+GGG | - | chr1.1:1799599-1799618 | None:intergenic | 30.0% | |
| CAAAAATAAGCCAATCCAAA+TGG | - | chr1.1:1797282-1797301 | None:intergenic | 30.0% | |
| CACACACATTTATATACTTC+TGG | - | chr1.1:1798211-1798230 | None:intergenic | 30.0% | |
| CATATGATAGAGATTAGAGA+CGG | + | chr1.1:1798439-1798458 | MS.gene27247:intron | 30.0% | |
| GACAGTGATTAGAATGAAAT+GGG | + | chr1.1:1797239-1797258 | MS.gene27247:intron | 30.0% | |
| TAATTGTGATTGAGAGAAGA+TGG | + | chr1.1:1797535-1797554 | MS.gene27247:intron | 30.0% | |
| TACGGTGTAGTTATTCAAAT+TGG | + | chr1.1:1798470-1798489 | MS.gene27247:intron | 30.0% | |
| TATCTTACTTTCATTCTCTG+TGG | + | chr1.1:1798604-1798623 | MS.gene27247:intron | 30.0% | |
| TATTCAAAATAGTTTCCGCT+TGG | - | chr1.1:1799600-1799619 | None:intergenic | 30.0% | |
| TGACAGTGATTAGAATGAAA+TGG | + | chr1.1:1797238-1797257 | MS.gene27247:intron | 30.0% | |
| TGATTTACTTAGCATTGTAG+TGG | + | chr1.1:1798745-1798764 | MS.gene27247:intron | 30.0% | |
| TTGAATGTCTTGAGAATTTG+AGG | + | chr1.1:1797823-1797842 | MS.gene27247:intron | 30.0% | |
| ! | CAGAAGTATATAAATGTGTG+TGG | + | chr1.1:1798209-1798228 | MS.gene27247:intron | 30.0% |
| ! | CTTTTTGATGTTTGGTTGTT+TGG | + | chr1.1:1798040-1798059 | MS.gene27247:intron | 30.0% |
| !! | ATCACTTTTGAGCTGTTATT+TGG | + | chr1.1:1798256-1798275 | MS.gene27247:intron | 30.0% |
| !! | ATCTAGAGGGAGTATATTTT+CGG | + | chr1.1:1797563-1797582 | MS.gene27247:intron | 30.0% |
| !! | CGGAAACTATTTTGAATATC+AGG | + | chr1.1:1799602-1799621 | MS.gene27247:CDS | 30.0% |
| !! | GATTTGATTTGTTATGCTTG+TGG | + | chr1.1:1797116-1797135 | MS.gene27247:intron | 30.0% |
| !! | GTATGATTTTGGCAAAATCA+CGG | - | chr1.1:1798019-1798038 | None:intergenic | 30.0% |
| !! | TAACTTGCTTGTAGAATAAC+TGG | + | chr1.1:1799038-1799057 | MS.gene27247:intron | 30.0% |
| !! | TGTTTTGTTACGATCCATTA+TGG | + | chr1.1:1798536-1798555 | MS.gene27247:intron | 30.0% |
| !! | TTCAAGGTTGATGATCATAT+CGG | + | chr1.1:1796798-1796817 | MS.gene27247:CDS | 30.0% |
| !!! | AATTGTAGCTAGGGTTTTTT+AGG | + | chr1.1:1797026-1797045 | MS.gene27247:intron | 30.0% |
| !!! | ATTGTAGCTAGGGTTTTTTA+GGG | + | chr1.1:1797027-1797046 | MS.gene27247:intron | 30.0% |
| !!! | GAGAATTTGAGGTTTTTAGT+TGG | + | chr1.1:1797834-1797853 | MS.gene27247:intron | 30.0% |
| !!! | TGATACTTTTGAGATTGTGA+GGG | + | chr1.1:1799848-1799867 | MS.gene27247:CDS | 30.0% |
| !!! | TTGATACTTTTGAGATTGTG+AGG | + | chr1.1:1799847-1799866 | MS.gene27247:CDS | 30.0% |
| ACAAGCTGCAAAGACATATT+TGG | + | chr1.1:1799647-1799666 | MS.gene27247:CDS | 35.0% | |
| ACAGAGGTAAAAACGGAAAA+CGG | - | chr1.1:1796976-1796995 | None:intergenic | 35.0% | |
| AGAATAATCCGAACAAACAG+AGG | - | chr1.1:1796992-1797011 | None:intergenic | 35.0% | |
| AGTTCCGTTGACATTCATTA+GGG | - | chr1.1:1798510-1798529 | None:intergenic | 35.0% | |
| ATATACTTCTGGGTATAGGT+TGG | - | chr1.1:1798200-1798219 | None:intergenic | 35.0% | |
| ATCCATTATGGATGTTCTAG+GGG | + | chr1.1:1798548-1798567 | MS.gene27247:intron | 35.0% | |
| ATGAGAAGAGAGTTCAGAAT+TGG | - | chr1.1:1796766-1796785 | None:intergenic | 35.0% | |
| ATGCATAGAGAAATCCTGAA+GGG | + | chr1.1:1798883-1798902 | MS.gene27247:intron | 35.0% | |
| CAGTGTTAACAAAAAGGGTT+TGG | - | chr1.1:1797214-1797233 | None:intergenic | 35.0% | |
| CGAACAAACAGAGGTAAAAA+CGG | - | chr1.1:1796983-1797002 | None:intergenic | 35.0% | |
| CGGTAAGTTTGACAAAATCA+CGG | + | chr1.1:1797948-1797967 | MS.gene27247:intron | 35.0% | |
| GAAAACTGAAACAGACACTA+AGG | - | chr1.1:1797470-1797489 | None:intergenic | 35.0% | |
| GAATATCAGGCATTTGCAAT+CGG | + | chr1.1:1799615-1799634 | MS.gene27247:CDS | 35.0% | |
| GATCCATTATGGATGTTCTA+GGG | + | chr1.1:1798547-1798566 | MS.gene27247:intron | 35.0% | |
| GGTAAGTTTGACAAAATCAC+GGG | + | chr1.1:1797949-1797968 | MS.gene27247:intron | 35.0% | |
| TATGATGCTTCTATGGTGTT+TGG | + | chr1.1:1797768-1797787 | MS.gene27247:intron | 35.0% | |
| TCATCAGAAGAAGATCTTCA+AGG | + | chr1.1:1796782-1796801 | MS.gene27247:CDS | 35.0% | |
| TGCATTCAGATCTCATGTAA+CGG | - | chr1.1:1796866-1796885 | None:intergenic | 35.0% | |
| TGTAAGATTCAGTGTCCATT+TGG | + | chr1.1:1797264-1797283 | MS.gene27247:intron | 35.0% | |
| TTCACTTTCCCATTACTATG+AGG | - | chr1.1:1798578-1798597 | None:intergenic | 35.0% | |
| ! | AGTTTTCAACTTTTGTTGGC+TGG | + | chr1.1:1797483-1797502 | MS.gene27247:intron | 35.0% |
| ! | CGTTTTTACCTCTGTTTGTT+CGG | + | chr1.1:1796981-1797000 | MS.gene27247:intron | 35.0% |
| ! | CTAATGACACGTTCTACTTT+TGG | - | chr1.1:1797680-1797699 | None:intergenic | 35.0% |
| ! | TAGCTGGATTAGATGAATCA+GGG | + | chr1.1:1799553-1799572 | MS.gene27247:CDS | 35.0% |
| ! | TCTTCTCTTTCAAGGTTTTG+AGG | + | chr1.1:1798705-1798724 | MS.gene27247:intron | 35.0% |
| !! | ACTTTAGGATCTTAACTGAG+TGG | + | chr1.1:1797173-1797192 | MS.gene27247:intron | 35.0% |
| !! | ATGATGTAATTTTGAGTGGC+AGG | + | chr1.1:1799482-1799501 | MS.gene27247:intron | 35.0% |
| !! | TCATTAGTTTCCTCTCCTTT+TGG | + | chr1.1:1797693-1797712 | MS.gene27247:intron | 35.0% |
| !! | TCTCCTTTTGGTCTTTTTTG+CGG | + | chr1.1:1797705-1797724 | MS.gene27247:intron | 35.0% |
| !!! | AGGGTTTTGAAATTGTAGCT+AGG | + | chr1.1:1797016-1797035 | MS.gene27247:intron | 35.0% |
| !!! | GGGTTTTGAAATTGTAGCTA+GGG | + | chr1.1:1797017-1797036 | MS.gene27247:intron | 35.0% |
| AAACAGCATAAATAGGGGAG+GGG | - | chr1.1:1799205-1799224 | None:intergenic | 40.0% | |
| AAGATGCACTCATTGCAACT+AGG | + | chr1.1:1799718-1799737 | MS.gene27247:CDS | 40.0% | |
| AATAGAAAGTTGGACAGGGT+GGG | + | chr1.1:1799349-1799368 | MS.gene27247:intron | 40.0% | |
| AGAAACAGCATAAATAGGGG+AGG | - | chr1.1:1799207-1799226 | None:intergenic | 40.0% | |
| AGAAGATGGAAGCAATCTAG+AGG | + | chr1.1:1797549-1797568 | MS.gene27247:intron | 40.0% | |
| AGATGCACTCATTGCAACTA+GGG | + | chr1.1:1799719-1799738 | MS.gene27247:CDS | 40.0% | |
| ATCTTTGATCAGATCTTCCC+GGG | - | chr1.1:1799703-1799722 | None:intergenic | 40.0% | |
| ATTGTCTAAACTGTCGTGAG+AGG | + | chr1.1:1798807-1798826 | MS.gene27247:intron | 40.0% | |
| CAGTTCCGTTGACATTCATT+AGG | - | chr1.1:1798511-1798530 | None:intergenic | 40.0% | |
| CAGTTTCCTGATCCAAAATG+TGG | - | chr1.1:1799815-1799834 | None:intergenic | 40.0% | |
| CATCTTTGATCAGATCTTCC+CGG | - | chr1.1:1799704-1799723 | None:intergenic | 40.0% | |
| CATGCATAGAGAAATCCTGA+AGG | + | chr1.1:1798882-1798901 | MS.gene27247:intron | 40.0% | |
| CGATCCATTATGGATGTTCT+AGG | + | chr1.1:1798546-1798565 | MS.gene27247:intron | 40.0% | |
| CGGTTGGCAAAAACTAAGTT+TGG | - | chr1.1:1797999-1798018 | None:intergenic | 40.0% | |
| CTGAAACGTCTTCTCTTTCA+AGG | + | chr1.1:1798697-1798716 | MS.gene27247:intron | 40.0% | |
| CTTACTTTCATTCTCTGTGG+AGG | + | chr1.1:1798607-1798626 | MS.gene27247:intron | 40.0% | |
| GAAACAGCATAAATAGGGGA+GGG | - | chr1.1:1799206-1799225 | None:intergenic | 40.0% | |
| GAAGATGGAAGCAATCTAGA+GGG | + | chr1.1:1797550-1797569 | MS.gene27247:intron | 40.0% | |
| GATTCAGTGTCCATTTGGAT+TGG | + | chr1.1:1797269-1797288 | MS.gene27247:intron | 40.0% | |
| GCAAAAAAGACCAAAAGGAG+AGG | - | chr1.1:1797706-1797725 | None:intergenic | 40.0% | |
| GCATTCAGATCTCATGTAAC+GGG | - | chr1.1:1796865-1796884 | None:intergenic | 40.0% | |
| TAATAGAAAGTTGGACAGGG+TGG | + | chr1.1:1799348-1799367 | MS.gene27247:intron | 40.0% | |
| TAATATGGAAGTAGGGAGAC+TGG | + | chr1.1:1798299-1798318 | MS.gene27247:intron | 40.0% | |
| TACCCCTAGAACATCCATAA+TGG | - | chr1.1:1798553-1798572 | None:intergenic | 40.0% | |
| TACGCTGTTGTGTTGTCTTA+TGG | + | chr1.1:1798977-1798996 | MS.gene27247:intron | 40.0% | |
| TCCTGATCCAAAATGTGGAA+AGG | - | chr1.1:1799810-1799829 | None:intergenic | 40.0% | |
| TGCACCCTAATGAATGTCAA+CGG | + | chr1.1:1798503-1798522 | MS.gene27247:intron | 40.0% | |
| TGCATAGAGAAATCCTGAAG+GGG | + | chr1.1:1798884-1798903 | MS.gene27247:intron | 40.0% | |
| TGTAGAATAACTGGCTGAAC+AGG | + | chr1.1:1799047-1799066 | MS.gene27247:intron | 40.0% | |
| TGTCTTCTTGACAAACACGA+CGG | - | chr1.1:1798135-1798154 | None:intergenic | 40.0% | |
| TGTTGTCTTATGGTGTGAAG+TGG | + | chr1.1:1798987-1799006 | MS.gene27247:intron | 40.0% | |
| TTAGAGACGGAGTTAGACTA+CGG | + | chr1.1:1798452-1798471 | MS.gene27247:intron | 40.0% | |
| ! | AGCTGGATTAGATGAATCAG+GGG | + | chr1.1:1799554-1799573 | MS.gene27247:CDS | 40.0% |
| ! | GTAGCTGGATTAGATGAATC+AGG | + | chr1.1:1799552-1799571 | MS.gene27247:CDS | 40.0% |
| ! | TAACCTAACCTGAGCCTTAT+CGG | - | chr1.1:1796949-1796968 | None:intergenic | 40.0% |
| ! | TCATAGTATTTTGCCTACCC+AGG | - | chr1.1:1797753-1797772 | None:intergenic | 40.0% |
| ! | TCATGTAACGGGAAAGAACA+CGG | - | chr1.1:1796854-1796873 | None:intergenic | 40.0% |
| ! | TTGTTGCTTGTGTGAAATGG+CGG | + | chr1.1:1797928-1797947 | MS.gene27247:intron | 40.0% |
| !! | CTCCTTTTGGTCTTTTTTGC+GGG | + | chr1.1:1797706-1797725 | MS.gene27247:intron | 40.0% |
| !! | GACTTGTTGCTTGTGTGAAA+TGG | + | chr1.1:1797925-1797944 | MS.gene27247:intron | 40.0% |
| !! | GATTTTGGCAAAATCACGGT+TGG | - | chr1.1:1798015-1798034 | None:intergenic | 40.0% |
| !! | TCCTTTTGGTCTTTTTTGCG+GGG | + | chr1.1:1797707-1797726 | MS.gene27247:intron | 40.0% |
| !!! | CTCTTTCAAGGTTTTGAGGA+GGG | + | chr1.1:1798709-1798728 | MS.gene27247:intron | 40.0% |
| !!! | GTTTGCTGACTCTTGTTTTC+TGG | + | chr1.1:1797898-1797917 | MS.gene27247:intron | 40.0% |
| !!! | TACTTTTGAGATTGTGAGGG+AGG | + | chr1.1:1799851-1799870 | MS.gene27247:CDS | 40.0% |
| !!! | TCTCTTTCAAGGTTTTGAGG+AGG | + | chr1.1:1798708-1798727 | MS.gene27247:intron | 40.0% |
| AAACTGTCGTGAGAGGCTAT+TGG | + | chr1.1:1798814-1798833 | MS.gene27247:intron | 45.0% | |
| AACAGCATAAATAGGGGAGG+GGG | - | chr1.1:1799204-1799223 | None:intergenic | 45.0% | |
| AACCACAGCAATGGTGCATA+CGG | - | chr1.1:1799775-1799794 | None:intergenic | 45.0% | |
| AAGCAAGGTTCAGCAGCAAT+AGG | + | chr1.1:1796696-1796715 | MS.gene27247:CDS | 45.0% | |
| ACCTTGCTTAACTGCTTCCA+TGG | - | chr1.1:1796685-1796704 | None:intergenic | 45.0% | |
| ACGATACCGACGTAACAACA+TGG | + | chr1.1:1796625-1796644 | MS.gene27247:CDS | 45.0% | |
| ACTAGAAGTCCAACGCCATA+AGG | - | chr1.1:1799534-1799553 | None:intergenic | 45.0% | |
| AGGGGTAGACCTCATAGTAA+TGG | + | chr1.1:1798566-1798585 | MS.gene27247:intron | 45.0% | |
| AGTGTCTCTGTTAGTGACTG+TGG | + | chr1.1:1797860-1797879 | MS.gene27247:intron | 45.0% | |
| CTCTATTACAACTGCCCAAG+CGG | + | chr1.1:1799582-1799601 | MS.gene27247:CDS | 45.0% | |
| CTTAACTGAGTGGCTCACTT+TGG | + | chr1.1:1797183-1797202 | MS.gene27247:intron | 45.0% | |
| GCATAGAGAAATCCTGAAGG+GGG | + | chr1.1:1798885-1798904 | MS.gene27247:intron | 45.0% | |
| GGGGTAGACCTCATAGTAAT+GGG | + | chr1.1:1798567-1798586 | MS.gene27247:intron | 45.0% | |
| GTACAGAAGTTGTCCAACCT+GGG | + | chr1.1:1797733-1797752 | MS.gene27247:intron | 45.0% | |
| ! | AGTATTTTGCCTACCCAGGT+TGG | - | chr1.1:1797749-1797768 | None:intergenic | 45.0% |
| ! | GCCTTTCCACATTTTGGATC+AGG | + | chr1.1:1799806-1799825 | MS.gene27247:CDS | 45.0% |
| ! | TGGTGAGCCTTTCCACATTT+TGG | + | chr1.1:1799800-1799819 | MS.gene27247:CDS | 45.0% |
| !! | CAAAAGTATTAGCCCCCTTC+AGG | - | chr1.1:1798900-1798919 | None:intergenic | 45.0% |
| !! | CCTTTTGGTCTTTTTTGCGG+GGG | + | chr1.1:1797708-1797727 | MS.gene27247:intron | 45.0% |
| !! | TAGTGGTCTATCGACTCGAT+AGG | + | chr1.1:1798762-1798781 | MS.gene27247:intron | 45.0% |
| !!! | GAACCACGTGAGTTTTGGAT+CGG | - | chr1.1:1796725-1796744 | None:intergenic | 45.0% |
| AAAGTTGGACAGGGTGGGTA+TGG | + | chr1.1:1799354-1799373 | MS.gene27247:intron | 50.0% | |
| AAGTTGGACAGGGTGGGTAT+GGG | + | chr1.1:1799355-1799374 | MS.gene27247:intron | 50.0% | |
| ACAGACACTAAGGACCCGTT+TGG | - | chr1.1:1797460-1797479 | None:intergenic | 50.0% | |
| ACCAACTCCAACCACAGCAA+TGG | - | chr1.1:1799784-1799803 | None:intergenic | 50.0% | |
| ACCATTGCTGTGGTTGGAGT+TGG | + | chr1.1:1799780-1799799 | MS.gene27247:CDS | 50.0% | |
| AGAAGTTGTCCAACCTGGGT+AGG | + | chr1.1:1797737-1797756 | MS.gene27247:intron | 50.0% | |
| AGGTTTGCACTCAGCGATCA+TGG | + | chr1.1:1799502-1799521 | MS.gene27247:intron | 50.0% | |
| CACTAAGGACCCGTTTGGAT+TGG | - | chr1.1:1797455-1797474 | None:intergenic | 50.0% | |
| CCCCCGCAAAAAAGACCAAA+AGG | - | chr1.1:1797711-1797730 | None:intergenic | 50.0% | |
| CCTTGCAAGGTGAAAAGCTC+AGG | + | chr1.1:1799745-1799764 | MS.gene27247:CDS | 50.0% | |
| CGACGTAACAACATGGTCAC+CGG | + | chr1.1:1796632-1796651 | MS.gene27247:CDS | 50.0% | |
| CGCTTGGGCAGTTGTAATAG+AGG | - | chr1.1:1799584-1799603 | None:intergenic | 50.0% | |
| CGGTGACCATGTTGTTACGT+CGG | - | chr1.1:1796634-1796653 | None:intergenic | 50.0% | |
| CTGAACGACGAGTCTACCAA+CGG | - | chr1.1:1796922-1796941 | None:intergenic | 50.0% | |
| CTTCTTGACAAACACGACGG+AGG | - | chr1.1:1798132-1798151 | None:intergenic | 50.0% | |
| GCCATGGAAGCAGTTAAGCA+AGG | + | chr1.1:1796681-1796700 | MS.gene27247:CDS | 50.0% | |
| GCTTCTGGTGCAGATCAAAG+TGG | + | chr1.1:1799933-1799952 | MS.gene27247:CDS | 50.0% | |
| GGTACAGAAGTTGTCCAACC+TGG | + | chr1.1:1797732-1797751 | MS.gene27247:intron | 50.0% | |
| GTATGCACCATTGCTGTGGT+TGG | + | chr1.1:1799774-1799793 | MS.gene27247:CDS | 50.0% | |
| GTCTCTGTTAGTGACTGTGG+TGG | + | chr1.1:1797863-1797882 | MS.gene27247:intron | 50.0% | |
| TATGAATCTCCGCTTCCCGT+TGG | + | chr1.1:1796903-1796922 | MS.gene27247:CDS | 50.0% | |
| TCTCCATTGGAGAACCACCT+TGG | - | chr1.1:1799974-1799993 | None:intergenic | 50.0% | |
| TCTCCGATCCAAAACTCACG+TGG | + | chr1.1:1796719-1796738 | MS.gene27247:CDS | 50.0% | |
| TGAACGACGAGTCTACCAAC+GGG | - | chr1.1:1796921-1796940 | None:intergenic | 50.0% | |
| TGACCAAGGTGGTTCTCCAA+TGG | + | chr1.1:1799968-1799987 | MS.gene27247:CDS | 50.0% | |
| TTTGATCAGATCTTCCCGGG+AGG | - | chr1.1:1799700-1799719 | None:intergenic | 50.0% | |
| ! | CCTGAGCTTTTCACCTTGCA+AGG | - | chr1.1:1799748-1799767 | None:intergenic | 50.0% |
| !! | AGATCAAAGTGGTGCTGGTG+GGG | + | chr1.1:1799944-1799963 | MS.gene27247:CDS | 50.0% |
| !! | CAGATCAAAGTGGTGCTGGT+GGG | + | chr1.1:1799943-1799962 | MS.gene27247:CDS | 50.0% |
| !! | CGATCATGGAAGCGTCCTTA+TGG | + | chr1.1:1799516-1799535 | MS.gene27247:CDS | 50.0% |
| !!! | GGTTTTGAGGAGGGAAACAG+TGG | + | chr1.1:1798718-1798737 | MS.gene27247:intron | 50.0% |
| !!! | TTTGGTCTTTTTTGCGGGGG+AGG | + | chr1.1:1797711-1797730 | MS.gene27247:intron | 50.0% |
| ACAACTTCACAGCCTCCTCC+CGG | + | chr1.1:1799682-1799701 | MS.gene27247:CDS | 55.0% | |
| ACGAGTCTACCAACGGGAAG+CGG | - | chr1.1:1796915-1796934 | None:intergenic | 55.0% | |
| ACGGGAAAGAACACGGCCAT+CGG | - | chr1.1:1796847-1796866 | None:intergenic | 55.0% | |
| AGTTGGACAGGGTGGGTATG+GGG | + | chr1.1:1799356-1799375 | MS.gene27247:intron | 55.0% | |
| CGTAACAACATGGTCACCGG+CGG | + | chr1.1:1796635-1796654 | MS.gene27247:CDS | 55.0% | |
| CTCCGTATGCACCATTGCTG+TGG | + | chr1.1:1799770-1799789 | MS.gene27247:CDS | 55.0% | |
| CTTCCAGGTGGAATACGCCA+TGG | + | chr1.1:1796665-1796684 | MS.gene27247:CDS | 55.0% | |
| CTTCCATGGCGTATTCCACC+TGG | - | chr1.1:1796671-1796690 | None:intergenic | 55.0% | |
| GAAGTAGGGAGACTGGTGTG+CGG | + | chr1.1:1798306-1798325 | MS.gene27247:intron | 55.0% | |
| GCAACTAGGGAGTCCTTGCA+AGG | + | chr1.1:1799732-1799751 | MS.gene27247:CDS | 55.0% | |
| GGTGCAGATCAAAGTGGTGC+TGG | + | chr1.1:1799939-1799958 | MS.gene27247:CDS | 55.0% | |
| GTAACAACATGGTCACCGGC+GGG | + | chr1.1:1796636-1796655 | MS.gene27247:CDS | 55.0% | |
| TCGCCGATAAGGCTCAGGTT+AGG | + | chr1.1:1796943-1796962 | MS.gene27247:intron | 55.0% | |
| TGCACCAGAAGCCTGATCTG+TGG | - | chr1.1:1799925-1799944 | None:intergenic | 55.0% | |
| ! | CGCGAGAACCACGTGAGTTT+TGG | - | chr1.1:1796730-1796749 | None:intergenic | 55.0% |
| ! | GCAGATCAAAGTGGTGCTGG+TGG | + | chr1.1:1799942-1799961 | MS.gene27247:CDS | 55.0% |
| ! | GGCGTTGGACTTCTAGTAGC+TGG | + | chr1.1:1799537-1799556 | MS.gene27247:CDS | 55.0% |
| !! | TGGAAGCGTCCTTATGGCGT+TGG | + | chr1.1:1799522-1799541 | MS.gene27247:CDS | 55.0% |
| ACCTGGAAGAGTCTTCCCGC+CGG | - | chr1.1:1796654-1796673 | None:intergenic | 60.0% | |
| AGCTGCACCTGCTGAACCTG+AGG | + | chr1.1:1799878-1799897 | MS.gene27247:CDS | 60.0% | |
| CAACTTCACAGCCTCCTCCC+GGG | + | chr1.1:1799683-1799702 | MS.gene27247:CDS | 60.0% | |
| CATATCGGCGTTGCCATCGC+CGG | + | chr1.1:1796813-1796832 | MS.gene27247:CDS | 60.0% | |
| CGTCGTTCAGCTCGCCGATA+AGG | + | chr1.1:1796932-1796951 | MS.gene27247:CDS | 60.0% | |
| GATCAGATCTTCCCGGGAGG+AGG | - | chr1.1:1799697-1799716 | None:intergenic | 60.0% | |
| GCAGGATGCTGCCACAGATC+AGG | + | chr1.1:1799911-1799930 | MS.gene27247:CDS | 60.0% | |
| GCTGCCACAGATCAGGCTTC+TGG | + | chr1.1:1799918-1799937 | MS.gene27247:CDS | 60.0% | |
| GGAAAGAACACGGCCATCGG+CGG | - | chr1.1:1796844-1796863 | None:intergenic | 60.0% | |
| GTTGGACAGGGTGGGTATGG+GGG | + | chr1.1:1799357-1799376 | MS.gene27247:intron | 60.0% | |
| TCAGCTCGCCGATAAGGCTC+AGG | + | chr1.1:1796938-1796957 | MS.gene27247:CDS | 60.0% | |
| TTGGACAGGGTGGGTATGGG+GGG | + | chr1.1:1799358-1799377 | MS.gene27247:intron | 60.0% | |
| ACCGGCGGGAAGACTCTTCC+AGG | + | chr1.1:1796650-1796669 | MS.gene27247:CDS | 65.0% | |
| ACCTGAGGCTGCAGCTGAGC+AGG | + | chr1.1:1799893-1799912 | MS.gene27247:CDS | 65.0% | |
| GCTGCAGCCTCAGGTTCAGC+AGG | - | chr1.1:1799888-1799907 | None:intergenic | 65.0% | |
| GGCGGGAAGACTCTTCCAGG+TGG | + | chr1.1:1796653-1796672 | MS.gene27247:CDS | 65.0% | |
| TCCTGCTCAGCTGCAGCCTC+AGG | - | chr1.1:1799897-1799916 | None:intergenic | 65.0% | |
| TGGACAGGGTGGGTATGGGG+GGG | + | chr1.1:1799359-1799378 | MS.gene27247:intron | 65.0% | |
| ACGGCCATCGGCGGTGAGAC+CGG | - | chr1.1:1796835-1796854 | None:intergenic | 70.0% | |
| ATCGCCGGTCTCACCGCCGA+TGG | + | chr1.1:1796828-1796847 | MS.gene27247:CDS | 70.0% | |
| ATCGGCGGTGAGACCGGCGA+TGG | - | chr1.1:1796829-1796848 | None:intergenic | 70.0% | |
| GCTGGTGGGGCTGACCAAGG+TGG | + | chr1.1:1799957-1799976 | MS.gene27247:CDS | 70.0% | |
| !! | GGTGCTGGTGGGGCTGACCA+AGG | + | chr1.1:1799954-1799973 | MS.gene27247:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1796609 | 1799998 | 1796609 | ID=MS.gene27247 |
| chr1.1 | mRNA | 1796609 | 1799998 | 1796609 | ID=MS.gene27247.t1;Parent=MS.gene27247 |
| chr1.1 | exon | 1796609 | 1796959 | 1796609 | ID=MS.gene27247.t1.exon1;Parent=MS.gene27247.t1 |
| chr1.1 | CDS | 1796609 | 1796959 | 1796609 | ID=cds.MS.gene27247.t1;Parent=MS.gene27247.t1 |
| chr1.1 | exon | 1799504 | 1799998 | 1799504 | ID=MS.gene27247.t1.exon2;Parent=MS.gene27247.t1 |
| chr1.1 | CDS | 1799504 | 1799998 | 1799504 | ID=cds.MS.gene27247.t1;Parent=MS.gene27247.t1 |
| Gene Sequence |
| Protein sequence |
