Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062770.t1 | XP_003589235.1 | 100 | 313 | 0 | 0 | 1 | 313 | 1 | 313 | 3.20E-174 | 620.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062770.t1 | Q9LT08 | 95.8 | 310 | 11 | 2 | 4 | 313 | 1 | 308 | 5.1e-165 | 581.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062770.t1 | G7I4G9 | 100.0 | 313 | 0 | 0 | 1 | 313 | 1 | 313 | 2.3e-174 | 620.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene062770 | 0.840072 | 1.08E-57 | -1.69E-46 |
| MS.gene049159 | MS.gene062770 | 0.807143 | 5.84E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene062770 | 0.85515 | 7.65E-62 | -1.69E-46 |
| MS.gene049368 | MS.gene062770 | 0.8244 | 8.24E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene062770 | 0.876739 | 1.10E-68 | -1.69E-46 |
| MS.gene050084 | MS.gene062770 | 0.805234 | 1.47E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene062770 | 0.829735 | 4.36E-55 | -1.69E-46 |
| MS.gene050213 | MS.gene062770 | 0.801021 | 1.10E-48 | -1.69E-46 |
| MS.gene050359 | MS.gene062770 | 0.840695 | 7.45E-58 | -1.69E-46 |
| MS.gene050384 | MS.gene062770 | 0.83164 | 1.49E-55 | -1.69E-46 |
| MS.gene050386 | MS.gene062770 | 0.83332 | 5.71E-56 | -1.69E-46 |
| MS.gene050414 | MS.gene062770 | 0.806657 | 7.40E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene062770 | 0.817037 | 4.06E-52 | -1.69E-46 |
| MS.gene050571 | MS.gene062770 | 0.820985 | 5.14E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene062770 | 0.846441 | 2.17E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene062770 | 0.866399 | 2.93E-65 | -1.69E-46 |
| MS.gene050689 | MS.gene062770 | 0.860112 | 2.59E-63 | -1.69E-46 |
| MS.gene050752 | MS.gene062770 | 0.843227 | 1.60E-58 | -1.69E-46 |
| MS.gene050838 | MS.gene062770 | 0.838927 | 2.15E-57 | -1.69E-46 |
| MS.gene050941 | MS.gene062770 | 0.838679 | 2.49E-57 | -1.69E-46 |
| MS.gene050945 | MS.gene062770 | 0.836225 | 1.06E-56 | -1.69E-46 |
| MS.gene050955 | MS.gene062770 | 0.815594 | 8.53E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene062770 | 0.893887 | 4.13E-75 | -1.69E-46 |
| MS.gene051233 | MS.gene062770 | 0.813634 | 2.32E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene062770 | 0.878868 | 1.98E-69 | -1.69E-46 |
| MS.gene051328 | MS.gene062770 | 0.802706 | 4.94E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene062770 | 0.876955 | 9.25E-69 | -1.69E-46 |
| MS.gene051365 | MS.gene062770 | 0.806813 | 6.85E-50 | -1.69E-46 |
| MS.gene051381 | MS.gene062770 | 0.821019 | 5.04E-53 | -1.69E-46 |
| MS.gene051597 | MS.gene062770 | 0.832108 | 1.14E-55 | -1.69E-46 |
| MS.gene051852 | MS.gene062770 | 0.817459 | 3.26E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene062770 | 0.814905 | 1.21E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene062770 | 0.858766 | 6.58E-63 | -1.69E-46 |
| MS.gene052072 | MS.gene062770 | 0.830527 | 2.79E-55 | -1.69E-46 |
| MS.gene052242 | MS.gene062770 | -0.806731 | 7.13E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene062770 | 0.852433 | 4.63E-61 | -1.69E-46 |
| MS.gene052335 | MS.gene062770 | 0.816536 | 5.26E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene062770 | 0.839083 | 1.96E-57 | -1.69E-46 |
| MS.gene052434 | MS.gene062770 | 0.823858 | 1.10E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene062770 | 0.820832 | 5.57E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene062770 | 0.825792 | 3.86E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene062770 | 0.827463 | 1.54E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene062770 | 0.832827 | 7.57E-56 | -1.69E-46 |
| MS.gene053058 | MS.gene062770 | 0.886979 | 2.13E-72 | -1.69E-46 |
| MS.gene053079 | MS.gene062770 | 0.83453 | 2.84E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene062770 | 0.820008 | 8.60E-53 | -1.69E-46 |
| MS.gene053456 | MS.gene062770 | 0.827751 | 1.32E-54 | -1.69E-46 |
| MS.gene053564 | MS.gene062770 | 0.829921 | 3.93E-55 | -1.69E-46 |
| MS.gene053575 | MS.gene062770 | 0.800709 | 1.27E-48 | -1.69E-46 |
| MS.gene05364 | MS.gene062770 | 0.822751 | 2.00E-53 | -1.69E-46 |
| MS.gene053726 | MS.gene062770 | 0.823214 | 1.56E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene062770 | 0.821716 | 3.48E-53 | -1.69E-46 |
| MS.gene054004 | MS.gene062770 | 0.844175 | 8.90E-59 | -1.69E-46 |
| MS.gene054178 | MS.gene062770 | 0.811864 | 5.66E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene062770 | 0.841276 | 5.24E-58 | -1.69E-46 |
| MS.gene054892 | MS.gene062770 | 0.816423 | 5.57E-52 | -1.69E-46 |
| MS.gene054893 | MS.gene062770 | 0.821671 | 3.57E-53 | -1.69E-46 |
| MS.gene05517 | MS.gene062770 | 0.832124 | 1.13E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene062770 | 0.816556 | 5.20E-52 | -1.69E-46 |
| MS.gene055311 | MS.gene062770 | 0.821262 | 4.43E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene062770 | 0.810983 | 8.78E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene062770 | 0.877046 | 8.60E-69 | -1.69E-46 |
| MS.gene055864 | MS.gene062770 | 0.821462 | 3.99E-53 | -1.69E-46 |
| MS.gene055979 | MS.gene062770 | 0.807186 | 5.72E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene062770 | 0.821393 | 4.14E-53 | -1.69E-46 |
| MS.gene056097 | MS.gene062770 | 0.855101 | 7.91E-62 | -1.69E-46 |
| MS.gene05615 | MS.gene062770 | 0.807201 | 5.67E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene062770 | 0.876432 | 1.40E-68 | -1.69E-46 |
| MS.gene056308 | MS.gene062770 | 0.81054 | 1.10E-50 | -1.69E-46 |
| MS.gene056390 | MS.gene062770 | 0.812398 | 4.33E-51 | -1.69E-46 |
| MS.gene056578 | MS.gene062770 | 0.802206 | 6.26E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene062770 | 0.874124 | 8.63E-68 | -1.69E-46 |
| MS.gene056787 | MS.gene062770 | 0.835268 | 1.85E-56 | -1.69E-46 |
| MS.gene056831 | MS.gene062770 | 0.834331 | 3.19E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene062770 | 0.836001 | 1.21E-56 | -1.69E-46 |
| MS.gene057034 | MS.gene062770 | 0.869355 | 3.29E-66 | -1.69E-46 |
| MS.gene057102 | MS.gene062770 | 0.834763 | 2.48E-56 | -1.69E-46 |
| MS.gene057208 | MS.gene062770 | 0.822029 | 2.95E-53 | -1.69E-46 |
| MS.gene05781 | MS.gene062770 | 0.826725 | 2.32E-54 | -1.69E-46 |
| MS.gene057890 | MS.gene062770 | -0.804966 | 1.68E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene062770 | 0.814662 | 1.37E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene062770 | 0.805331 | 1.41E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene062770 | 0.826087 | 3.29E-54 | -1.69E-46 |
| MS.gene058126 | MS.gene062770 | 0.817026 | 4.08E-52 | -1.69E-46 |
| MS.gene058149 | MS.gene062770 | 0.817083 | 3.96E-52 | -1.69E-46 |
| MS.gene058159 | MS.gene062770 | 0.801681 | 8.03E-49 | -1.69E-46 |
| MS.gene058261 | MS.gene062770 | 0.804025 | 2.63E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene062770 | 0.83352 | 5.09E-56 | -1.69E-46 |
| MS.gene058758 | MS.gene062770 | 0.800754 | 1.24E-48 | -1.69E-46 |
| MS.gene058781 | MS.gene062770 | 0.805442 | 1.33E-49 | -1.69E-46 |
| MS.gene058976 | MS.gene062770 | 0.858236 | 9.47E-63 | -1.69E-46 |
| MS.gene059007 | MS.gene062770 | 0.82482 | 6.56E-54 | -1.69E-46 |
| MS.gene059146 | MS.gene062770 | 0.881693 | 1.94E-70 | -1.69E-46 |
| MS.gene059170 | MS.gene062770 | 0.812824 | 3.49E-51 | -1.69E-46 |
| MS.gene059360 | MS.gene062770 | 0.816959 | 4.23E-52 | -1.69E-46 |
| MS.gene05952 | MS.gene062770 | 0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene05978 | MS.gene062770 | 0.823671 | 1.22E-53 | -1.69E-46 |
| MS.gene05985 | MS.gene062770 | -0.826136 | 3.20E-54 | -1.69E-46 |
| MS.gene059901 | MS.gene062770 | -0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene062770 | 0.862659 | 4.33E-64 | -1.69E-46 |
| MS.gene06010 | MS.gene062770 | 0.804178 | 2.45E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene062770 | 0.805256 | 1.46E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene062770 | 0.809293 | 2.03E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene062770 | 0.80648 | 8.06E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene062770 | 0.815783 | 7.75E-52 | -1.69E-46 |
| MS.gene060527 | MS.gene062770 | 0.803128 | 4.04E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene062770 | 0.826265 | 2.98E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene062770 | 0.806218 | 9.15E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene062770 | 0.827518 | 1.50E-54 | -1.69E-46 |
| MS.gene060933 | MS.gene062770 | 0.825506 | 4.52E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene062770 | 0.855573 | 5.76E-62 | -1.69E-46 |
| MS.gene060937 | MS.gene062770 | 0.860768 | 1.64E-63 | -1.69E-46 |
| MS.gene061006 | MS.gene062770 | 0.817257 | 3.62E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene062770 | 0.855785 | 5.00E-62 | -1.69E-46 |
| MS.gene061160 | MS.gene062770 | 0.803179 | 3.94E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062770.t1 | MTR_1g019930 | 100.000 | 313 | 0 | 0 | 1 | 313 | 1 | 313 | 0.0 | 650 |
| MS.gene062770.t1 | MTR_2g017680 | 99.032 | 310 | 2 | 1 | 4 | 313 | 1 | 309 | 0.0 | 636 |
| MS.gene062770.t1 | MTR_3g108790 | 42.029 | 207 | 107 | 9 | 33 | 234 | 58 | 256 | 3.00e-35 | 131 |
| MS.gene062770.t1 | MTR_8g006640 | 62.857 | 35 | 13 | 0 | 102 | 136 | 29 | 63 | 2.32e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062770.t1 | AT5G23540 | 95.806 | 310 | 11 | 2 | 4 | 313 | 1 | 308 | 0.0 | 611 |
| MS.gene062770.t1 | AT5G23540 | 97.683 | 259 | 6 | 0 | 55 | 313 | 1 | 259 | 0.0 | 528 |
| MS.gene062770.t1 | AT1G71230 | 40.566 | 212 | 103 | 8 | 33 | 234 | 57 | 255 | 3.51e-34 | 128 |
| MS.gene062770.t1 | AT1G22920 | 39.806 | 206 | 113 | 8 | 33 | 234 | 57 | 255 | 1.61e-32 | 124 |
| MS.gene062770.t1 | AT1G22920 | 39.806 | 206 | 113 | 8 | 33 | 234 | 57 | 255 | 2.08e-32 | 123 |
| MS.gene062770.t1 | AT5G27607 | 76.596 | 47 | 11 | 0 | 100 | 146 | 70 | 116 | 2.56e-19 | 82.4 |
Find 82 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTTGGCTGCTGGCTTTC+CGG | 0.193654 | 1.4:+3399766 | MS.gene062770:CDS |
| CACATCCTGGATTTGGCTGC+TGG | 0.286015 | 1.4:+3399758 | MS.gene062770:CDS |
| CTGCACTGCCTTGTTGTACT+TGG | 0.295287 | 1.4:-3401600 | None:intergenic |
| AGGTGGTCATTGATGCTTTC+CGG | 0.296529 | 1.4:+3400673 | MS.gene062770:CDS |
| TATCATTCACATCCTGGATT+TGG | 0.322391 | 1.4:+3399751 | MS.gene062770:CDS |
| GAAGTTATGGGTTTAATGTT+GGG | 0.324843 | 1.4:+3398536 | MS.gene062770:CDS |
| TCAAACATTGTTCAGACTTT+GGG | 0.328260 | 1.4:+3401722 | MS.gene062770:CDS |
| GATCCTATTCAGAGTGTTAA+AGG | 0.332585 | 1.4:+3400648 | MS.gene062770:CDS |
| TGGTGTACCTATGGAAGTTA+TGG | 0.339817 | 1.4:+3398523 | MS.gene062770:CDS |
| ATCAAACATTGTTCAGACTT+TGG | 0.343443 | 1.4:+3401721 | MS.gene062770:CDS |
| AAGACACTCACTTGGATAGA+TGG | 0.346214 | 1.4:-3400771 | None:intergenic |
| GGAAGTTATGGGTTTAATGT+TGG | 0.366620 | 1.4:+3398535 | MS.gene062770:CDS |
| ACTCAATAGCAATCAATTAC+AGG | 0.372816 | 1.4:+3400909 | MS.gene062770:CDS |
| TTGCCTTTAACACTCTGAAT+AGG | 0.383773 | 1.4:-3400651 | None:intergenic |
| AAACTTGCTCAGATGAATCT+AGG | 0.385066 | 1.4:-3398343 | None:intergenic |
| CTTGATATGTTGAAACAAAC+TGG | 0.388419 | 1.4:+3398668 | MS.gene062770:CDS |
| GGTGTACCTATGGAAGTTAT+GGG | 0.391133 | 1.4:+3398524 | MS.gene062770:CDS |
| TGACCCAGCATCATAGTTTG+TGG | 0.401995 | 1.4:-3400705 | None:intergenic |
| AACTAATGAACAAACTGTTC+AGG | 0.404384 | 1.4:+3401024 | MS.gene062770:CDS |
| TCGTTGATGAGTATACTGTT+AGG | 0.407413 | 1.4:+3398564 | MS.gene062770:CDS |
| TTAACCTTCATAAGAAGAAA+TGG | 0.410261 | 1.4:+3400960 | MS.gene062770:CDS |
| CAGTCCATTTCTTCTTATGA+AGG | 0.428123 | 1.4:-3400964 | None:intergenic |
| CAAAGAATGTTTGCGGGTGC+AGG | 0.429014 | 1.4:+3398281 | MS.gene062770:CDS |
| CGTTGATGAGTATACTGTTA+GGG | 0.432147 | 1.4:+3398565 | MS.gene062770:CDS |
| TTCAGGCCAGAGATGGTTGT+AGG | 0.442433 | 1.4:+3399724 | MS.gene062770:intron |
| GTTCAGATGGCCCAAGTTGG+AGG | 0.446964 | 1.4:-3400745 | None:intergenic |
| TTGGTGAATTTAGGTAGGGC+TGG | 0.447981 | 1.4:+3398503 | MS.gene062770:intron |
| GCGACAGACAACCTCCAACT+TGG | 0.454333 | 1.4:+3400734 | MS.gene062770:CDS |
| GCTATGCCTCAGAGTGGTAC+TGG | 0.454847 | 1.4:+3398602 | MS.gene062770:CDS |
| AGACTTCAAAGAATGTTTGC+GGG | 0.454988 | 1.4:+3398275 | MS.gene062770:CDS |
| GGATAGATGGCTTGTTCAGA+TGG | 0.463953 | 1.4:-3400758 | None:intergenic |
| GGCTTTAAATCAACGGGCAG+TGG | 0.464164 | 1.4:+3400614 | MS.gene062770:CDS |
| TAATCCACAAACTATGATGC+TGG | 0.468722 | 1.4:+3400701 | MS.gene062770:CDS |
| GAAAGCCAGCAGCCAAATCC+AGG | 0.481373 | 1.4:-3399763 | None:intergenic |
| AGCATCCTGCCTTCCGACAT+TGG | 0.486252 | 1.4:-3401660 | None:intergenic |
| GGTTGGTATCATTCACATCC+TGG | 0.489485 | 1.4:+3399745 | MS.gene062770:CDS |
| TCTAACAATCATGTCAGGTA+TGG | 0.495449 | 1.4:+3398250 | None:intergenic |
| TAGTTTGTGGATTAATCAGC+CGG | 0.499510 | 1.4:-3400692 | None:intergenic |
| CAAGTACAACAAGGCAGTGC+AGG | 0.499844 | 1.4:+3401601 | MS.gene062770:CDS |
| GCGGGTGCAGGTGGAGCACT+CGG | 0.502077 | 1.4:+3398293 | MS.gene062770:CDS |
| GGACTGATGGTTTGACACTC+AGG | 0.502110 | 1.4:+3400981 | MS.gene062770:CDS |
| TGCTCAGATGAATCTAGGGT+GGG | 0.502945 | 1.4:-3398338 | None:intergenic |
| AGGTAGGGCTGGTGTACCTA+TGG | 0.507375 | 1.4:+3398514 | MS.gene062770:intron |
| TACCAACCTACAACCATCTC+TGG | 0.511025 | 1.4:-3399730 | None:intergenic |
| CGACAGACAACCTCCAACTT+GGG | 0.511124 | 1.4:+3400735 | MS.gene062770:CDS |
| TGTGGACATTAACACACAAC+AGG | 0.519212 | 1.4:+3399789 | MS.gene062770:CDS |
| AATTGCCAATGTCGGAAGGC+AGG | 0.531358 | 1.4:+3401655 | MS.gene062770:CDS |
| AGAATGTTTGCGGGTGCAGG+TGG | 0.533259 | 1.4:+3398284 | MS.gene062770:CDS |
| GCTCAGATGAATCTAGGGTG+GGG | 0.536007 | 1.4:-3398337 | None:intergenic |
| AACTTGCTCAGATGAATCTA+GGG | 0.538949 | 1.4:-3398342 | None:intergenic |
| TCGATTCTAACAATCATGTC+AGG | 0.540200 | 1.4:+3398245 | None:intergenic |
| AAGTTATGGGTTTAATGTTG+GGG | 0.546173 | 1.4:+3398537 | MS.gene062770:CDS |
| AATAATGTCGGTTCAAGCCA+TGG | 0.548960 | 1.4:-3400886 | None:intergenic |
| TGGCTGCTGGCTTTCCGGTG+TGG | 0.551510 | 1.4:+3399771 | MS.gene062770:CDS |
| AAGACTTCAAAGAATGTTTG+CGG | 0.555255 | 1.4:+3398274 | MS.gene062770:CDS |
| CTTGTTCAGATGGCCCAAGT+TGG | 0.556282 | 1.4:-3400748 | None:intergenic |
| TTTCTGTTTCAGGCCAGAGA+TGG | 0.557983 | 1.4:+3399717 | MS.gene062770:intron |
| GGCCAGAGATGGTTGTAGGT+TGG | 0.558155 | 1.4:+3399728 | MS.gene062770:intron |
| CTCAGATGAATCTAGGGTGG+GGG | 0.560533 | 1.4:-3398336 | None:intergenic |
| CATAAGAAGAAATGGACTGA+TGG | 0.560914 | 1.4:+3400968 | MS.gene062770:CDS |
| ATTAAACCCATAACTTCCAT+AGG | 0.562193 | 1.4:-3398530 | None:intergenic |
| TTGCTATTGAGTAATAATGT+CGG | 0.574217 | 1.4:-3400898 | None:intergenic |
| TCAACGGGCAGTGGCTGTCG+TGG | 0.579907 | 1.4:+3400623 | MS.gene062770:CDS |
| AATTAGAAACATGCTCCTCA+AGG | 0.585638 | 1.4:-3401691 | None:intergenic |
| AATCCACAAACTATGATGCT+GGG | 0.587299 | 1.4:+3400702 | MS.gene062770:CDS |
| ACGGGCAGTGGCTGTCGTGG+TGG | 0.593252 | 1.4:+3400626 | MS.gene062770:CDS |
| AAACTTGCAATTGCCAATGT+CGG | 0.594399 | 1.4:+3401647 | MS.gene062770:CDS |
| ATATGTTGAAACAAACTGGA+AGG | 0.596652 | 1.4:+3398672 | MS.gene062770:CDS |
| GTACAACAAGGCAGTGCAGG+AGG | 0.596933 | 1.4:+3401604 | MS.gene062770:CDS |
| AAGTTGGAGGTTGTCTGTCG+CGG | 0.603477 | 1.4:-3400732 | None:intergenic |
| TTGCAATTGCCAATGTCGGA+AGG | 0.605525 | 1.4:+3401651 | MS.gene062770:CDS |
| TTGCTCAGATGAATCTAGGG+TGG | 0.606378 | 1.4:-3398339 | None:intergenic |
| TATTCAGAGTGTTAAAGGCA+AGG | 0.607906 | 1.4:+3400653 | MS.gene062770:CDS |
| ACTCGGTGGTCATCCACCAC+CGG | 0.624586 | 1.4:+3398310 | MS.gene062770:CDS |
| AGTTATGGGTTTAATGTTGG+GGG | 0.647215 | 1.4:+3398538 | MS.gene062770:CDS |
| CTTCTCAAAATGCTCAAACA+CGG | 0.657005 | 1.4:+3398383 | MS.gene062770:CDS |
| GGTGCAGGTGGAGCACTCGG+TGG | 0.667262 | 1.4:+3398296 | MS.gene062770:CDS |
| GGATGCTAAGAAGCACCTTG+AGG | 0.677016 | 1.4:+3401676 | MS.gene062770:CDS |
| TTTAGCAACCAAGTACAACA+AGG | 0.716028 | 1.4:+3401592 | MS.gene062770:CDS |
| CTAACACCAGTACCACTCTG+AGG | 0.717528 | 1.4:-3398608 | None:intergenic |
| TCAGAGTGTTAAAGGCAAGG+TGG | 0.720728 | 1.4:+3400656 | MS.gene062770:CDS |
| TTGTGTGTTAATGTCCACAC+CGG | 0.745909 | 1.4:-3399785 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTTTTTCTTTATC+TGG | + | chr1.4:3401128-3401147 | MS.gene062770:intron | 10.0% |
| !! | AAAAATCCCAATAAAAAATT+AGG | - | chr1.4:3398483-3398502 | None:intergenic | 15.0% |
| !! | AAAATCCCAATAAAAAATTA+GGG | - | chr1.4:3398482-3398501 | None:intergenic | 15.0% |
| !! | AAATTAGGGTTTAAAAAATT+TGG | - | chr1.4:3398468-3398487 | None:intergenic | 15.0% |
| !! | AATTAGGGTTTAAAAAATTT+GGG | - | chr1.4:3398467-3398486 | None:intergenic | 15.0% |
| !! | ATGATATTTATGAAATTTCT+GGG | + | chr1.4:3399904-3399923 | MS.gene062770:intron | 15.0% |
| !! | TATGATATCATATAACAATA+CGG | - | chr1.4:3400124-3400143 | None:intergenic | 15.0% |
| !!! | ACATTTATAAAGCTTTTATA+AGG | + | chr1.4:3399370-3399389 | MS.gene062770:intron | 15.0% |
| !!! | ATCTTTTTATTTTACTTGTT+TGG | - | chr1.4:3399886-3399905 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTGGGATTTTTT+TGG | + | chr1.4:3398484-3398503 | MS.gene062770:intron | 15.0% |
| !!! | TTAAACCCTAATTTTTTATT+GGG | + | chr1.4:3398474-3398493 | MS.gene062770:intron | 15.0% |
| !!! | TTTAAACCCTAATTTTTTAT+TGG | + | chr1.4:3398473-3398492 | MS.gene062770:intron | 15.0% |
| !!! | TTTCACAAACATTATTTTAT+CGG | + | chr1.4:3401317-3401336 | MS.gene062770:intron | 15.0% |
| !! | AGAAAAGTAAATTTATTTCC+TGG | + | chr1.4:3399979-3399998 | MS.gene062770:intron | 20.0% |
| !! | ATACCATAAGTAAAATGATA+AGG | + | chr1.4:3399090-3399109 | MS.gene062770:intron | 20.0% |
| !! | ATTAGGGTTTAAAAAATTTG+GGG | - | chr1.4:3398466-3398485 | None:intergenic | 20.0% |
| !! | CAATAATGTGAATGTTATAA+TGG | + | chr1.4:3399219-3399238 | MS.gene062770:intron | 20.0% |
| !! | GATGATATTTATGAAATTTC+TGG | + | chr1.4:3399903-3399922 | MS.gene062770:intron | 20.0% |
| !! | TAAAACGAATTTATGAAACT+TGG | + | chr1.4:3399058-3399077 | MS.gene062770:intron | 20.0% |
| !! | TAAATTTAATTGTTGCTCAT+AGG | - | chr1.4:3401263-3401282 | None:intergenic | 20.0% |
| !! | TATAAAAGTTTAGATGAGTT+TGG | + | chr1.4:3398903-3398922 | MS.gene062770:intron | 20.0% |
| !! | TGATATTTATGAAATTTCTG+GGG | + | chr1.4:3399905-3399924 | MS.gene062770:intron | 20.0% |
| !!! | AGTATTTTTATTGCTAAAGA+TGG | + | chr1.4:3399949-3399968 | MS.gene062770:intron | 20.0% |
| !!! | ATATTTCATTTAAGTTAGAC+AGG | + | chr1.4:3399020-3399039 | MS.gene062770:intron | 20.0% |
| !!! | GAATTTTGCATTTCTTAAAT+GGG | + | chr1.4:3398748-3398767 | MS.gene062770:intron | 20.0% |
| !!! | GTATTTTTATTGCTAAAGAT+GGG | + | chr1.4:3399950-3399969 | MS.gene062770:intron | 20.0% |
| !!! | TGAATTTTGCATTTCTTAAA+TGG | + | chr1.4:3398747-3398766 | MS.gene062770:intron | 20.0% |
| ! | ACACAAAACAATATAGAACT+AGG | + | chr1.4:3399252-3399271 | MS.gene062770:intron | 25.0% |
| ! | ATTGAAACTAACTGTAAACT+AGG | + | chr1.4:3400461-3400480 | MS.gene062770:intron | 25.0% |
| ! | CACAAAACAATATAGAACTA+GGG | + | chr1.4:3399253-3399272 | MS.gene062770:intron | 25.0% |
| ! | GATTCTAGTAATTTAAGTCA+AGG | - | chr1.4:3401485-3401504 | None:intergenic | 25.0% |
| ! | TAAGCAAAAAATTGAGATGT+TGG | + | chr1.4:3399160-3399179 | MS.gene062770:intron | 25.0% |
| ! | TTAACCTTCATAAGAAGAAA+TGG | + | chr1.4:3400960-3400979 | MS.gene062770:CDS | 25.0% |
| ! | TTAGGGTTTAAAAAATTTGG+GGG | - | chr1.4:3398465-3398484 | None:intergenic | 25.0% |
| ! | TTGAAACTAACTGTAAACTA+GGG | + | chr1.4:3400462-3400481 | MS.gene062770:intron | 25.0% |
| !! | ATATTTATGAAATTTCTGGG+GGG | + | chr1.4:3399907-3399926 | MS.gene062770:intron | 25.0% |
| !! | CTTCCTTATCATTTTACTTA+TGG | - | chr1.4:3399096-3399115 | None:intergenic | 25.0% |
| !! | GATATTTATGAAATTTCTGG+GGG | + | chr1.4:3399906-3399925 | MS.gene062770:intron | 25.0% |
| !! | TAATGAGTTGGATCAAAATA+TGG | - | chr1.4:3400149-3400168 | None:intergenic | 25.0% |
| !! | TTGCTATTGAGTAATAATGT+CGG | - | chr1.4:3400901-3400920 | None:intergenic | 25.0% |
| !!! | AAATTTTAAAGACACTCACT+TGG | - | chr1.4:3400782-3400801 | None:intergenic | 25.0% |
| !!! | TTTTTTGGTGAATTTAGGTA+GGG | + | chr1.4:3398499-3398518 | MS.gene062770:intron | 25.0% |
| !!! | TTTTTTTGGTGAATTTAGGT+AGG | + | chr1.4:3398498-3398517 | MS.gene062770:intron | 25.0% |
| AAACTTAGACTTTCTGTTTC+AGG | + | chr1.4:3399707-3399726 | MS.gene062770:intron | 30.0% | |
| AACTAATGAACAAACTGTTC+AGG | + | chr1.4:3401024-3401043 | MS.gene062770:CDS | 30.0% | |
| AAGACTTCAAAGAATGTTTG+CGG | + | chr1.4:3398274-3398293 | MS.gene062770:CDS | 30.0% | |
| AAGTTATGGGTTTAATGTTG+GGG | + | chr1.4:3398537-3398556 | MS.gene062770:CDS | 30.0% | |
| ACATGTAGAGATTAATGAGT+TGG | - | chr1.4:3400161-3400180 | None:intergenic | 30.0% | |
| ACTCAATAGCAATCAATTAC+AGG | + | chr1.4:3400909-3400928 | MS.gene062770:CDS | 30.0% | |
| AGAAGAGAACAGAAAAAAGA+AGG | - | chr1.4:3401095-3401114 | None:intergenic | 30.0% | |
| AGACATTATTCATGATAGAC+AGG | + | chr1.4:3399500-3399519 | MS.gene062770:intron | 30.0% | |
| ATAAGGCAATTAGAGATAAG+TGG | + | chr1.4:3399387-3399406 | MS.gene062770:intron | 30.0% | |
| ATACACGAAAATACAAAGAC+AGG | - | chr1.4:3401367-3401386 | None:intergenic | 30.0% | |
| ATATGTTGAAACAAACTGGA+AGG | + | chr1.4:3398672-3398691 | MS.gene062770:CDS | 30.0% | |
| ATCAAACATTGTTCAGACTT+TGG | + | chr1.4:3401721-3401740 | MS.gene062770:CDS | 30.0% | |
| ATTAAACCCATAACTTCCAT+AGG | - | chr1.4:3398533-3398552 | None:intergenic | 30.0% | |
| ATTGCATTGGATAGAAAAGT+TGG | + | chr1.4:3399279-3399298 | MS.gene062770:intron | 30.0% | |
| ATTTAATTGTTGCTCATAGG+TGG | - | chr1.4:3401260-3401279 | None:intergenic | 30.0% | |
| CAGGATATTATCATGTCATT+TGG | + | chr1.4:3399519-3399538 | MS.gene062770:intron | 30.0% | |
| CATAAGTTTCATCATGTTGT+AGG | + | chr1.4:3401187-3401206 | MS.gene062770:intron | 30.0% | |
| CTCTACATGTGTATAAGAAT+TGG | + | chr1.4:3400171-3400190 | MS.gene062770:intron | 30.0% | |
| CTTGATATGTTGAAACAAAC+TGG | + | chr1.4:3398668-3398687 | MS.gene062770:CDS | 30.0% | |
| GAAGTTATGGGTTTAATGTT+GGG | + | chr1.4:3398536-3398555 | MS.gene062770:CDS | 30.0% | |
| GGTATGAGAAATTGAATGAA+GGG | - | chr1.4:3398444-3398463 | None:intergenic | 30.0% | |
| GTTTCAATTACAAATTCTCC+AGG | - | chr1.4:3400449-3400468 | None:intergenic | 30.0% | |
| TAAGGCAATTAGAGATAAGT+GGG | + | chr1.4:3399388-3399407 | MS.gene062770:intron | 30.0% | |
| TAATGGTTTATTCTCGAGAA+TGG | + | chr1.4:3401418-3401437 | MS.gene062770:intron | 30.0% | |
| TACACGAAAATACAAAGACA+GGG | - | chr1.4:3401366-3401385 | None:intergenic | 30.0% | |
| TCAAACATTGTTCAGACTTT+GGG | + | chr1.4:3401722-3401741 | MS.gene062770:CDS | 30.0% | |
| TCAGGTATGTTAAGATTCTT+GGG | + | chr1.4:3401042-3401061 | MS.gene062770:intron | 30.0% | |
| TGAATCAAAATCCCTCTTAA+TGG | - | chr1.4:3399466-3399485 | None:intergenic | 30.0% | |
| TGAATGTTATAATGGTTGTG+TGG | + | chr1.4:3399227-3399246 | MS.gene062770:intron | 30.0% | |
| TTCAGGTATGTTAAGATTCT+TGG | + | chr1.4:3401041-3401060 | MS.gene062770:intron | 30.0% | |
| TTGCATTGGATAGAAAAGTT+GGG | + | chr1.4:3399280-3399299 | MS.gene062770:intron | 30.0% | |
| TTGCTTAAATCCTATGGTTA+TGG | - | chr1.4:3399131-3399150 | None:intergenic | 30.0% | |
| ! | AATCTTGCTTTAGGTGATTT+GGG | + | chr1.4:3399335-3399354 | MS.gene062770:intron | 30.0% |
| ! | ATTTTCGTGTATGATGTTGT+GGG | + | chr1.4:3401375-3401394 | MS.gene062770:intron | 30.0% |
| ! | TATTTTCGTGTATGATGTTG+TGG | + | chr1.4:3401374-3401393 | MS.gene062770:intron | 30.0% |
| ! | TGACTTCAAATTCTCCTTTT+AGG | + | chr1.4:3400856-3400875 | MS.gene062770:intron | 30.0% |
| ! | TTATCTATTGCAGAGTTTTG+AGG | + | chr1.4:3400593-3400612 | MS.gene062770:intron | 30.0% |
| ! | TTTATAGATTATGAAGTGCC+TGG | + | chr1.4:3400428-3400447 | MS.gene062770:intron | 30.0% |
| !!! | GGGATTTTTTTGGTGAATTT+AGG | + | chr1.4:3398494-3398513 | MS.gene062770:intron | 30.0% |
| !!! | GTTTTGAGGCTTTAAATCAA+CGG | + | chr1.4:3400607-3400626 | MS.gene062770:CDS | 30.0% |
| !!! | TTTTGAGGCTTTAAATCAAC+GGG | + | chr1.4:3400608-3400627 | MS.gene062770:CDS | 30.0% |
| AAACTTGCAATTGCCAATGT+CGG | + | chr1.4:3401647-3401666 | MS.gene062770:CDS | 35.0% | |
| AACATCCCAATCTAAGAATG+TGG | - | chr1.4:3400271-3400290 | None:intergenic | 35.0% | |
| AATCCACAAACTATGATGCT+GGG | + | chr1.4:3400702-3400721 | MS.gene062770:CDS | 35.0% | |
| AATTAGAAACATGCTCCTCA+AGG | - | chr1.4:3401694-3401713 | None:intergenic | 35.0% | |
| ACATCCCAATCTAAGAATGT+GGG | - | chr1.4:3400270-3400289 | None:intergenic | 35.0% | |
| ACGTCCAAATTAGAGATAGA+GGG | + | chr1.4:3399415-3399434 | MS.gene062770:intron | 35.0% | |
| AGAACACTAAAGCATAATCC+AGG | - | chr1.4:3400000-3400019 | None:intergenic | 35.0% | |
| AGACTTCAAAGAATGTTTGC+GGG | + | chr1.4:3398275-3398294 | MS.gene062770:CDS | 35.0% | |
| AGAGATGTAACCATAACCAT+AGG | + | chr1.4:3399118-3399137 | MS.gene062770:intron | 35.0% | |
| AGCAATCTATCATCAACTAC+AGG | - | chr1.4:3401449-3401468 | None:intergenic | 35.0% | |
| AGTTATGGGTTTAATGTTGG+GGG | + | chr1.4:3398538-3398557 | MS.gene062770:CDS | 35.0% | |
| AGTTTAGATGAGTTGTGTCT+CGG | + | chr1.4:3398803-3398822 | MS.gene062770:intron | 35.0% | |
| AGTTTAGATGAGTTTGGTCT+CGG | + | chr1.4:3398909-3398928 | MS.gene062770:intron | 35.0% | |
| ATTACCCCACATTCTTAGAT+TGG | + | chr1.4:3400262-3400281 | MS.gene062770:intron | 35.0% | |
| CAAAATCCCTCTTAATGGTT+TGG | - | chr1.4:3399461-3399480 | None:intergenic | 35.0% | |
| CAGTCCATTTCTTCTTATGA+AGG | - | chr1.4:3400967-3400986 | None:intergenic | 35.0% | |
| CTTCTCAAAATGCTCAAACA+CGG | + | chr1.4:3398383-3398402 | MS.gene062770:CDS | 35.0% | |
| GGAAGTTATGGGTTTAATGT+TGG | + | chr1.4:3398535-3398554 | MS.gene062770:CDS | 35.0% | |
| GGGTATGAGAAATTGAATGA+AGG | - | chr1.4:3398445-3398464 | None:intergenic | 35.0% | |
| GTAGACTAGAATCTTGCTTT+AGG | + | chr1.4:3399326-3399345 | MS.gene062770:intron | 35.0% | |
| TAATCCACAAACTATGATGC+TGG | + | chr1.4:3400701-3400720 | MS.gene062770:CDS | 35.0% | |
| TACCACATCTTCATAAGAGA+TGG | - | chr1.4:3399309-3399328 | None:intergenic | 35.0% | |
| TACCATCTCTTATGAAGATG+TGG | + | chr1.4:3399304-3399323 | MS.gene062770:intron | 35.0% | |
| TATAGGCCAAACCATTAAGA+GGG | + | chr1.4:3399452-3399471 | MS.gene062770:intron | 35.0% | |
| TATCATTCACATCCTGGATT+TGG | + | chr1.4:3399751-3399770 | MS.gene062770:CDS | 35.0% | |
| TCAAGTCCAGACATTATTCA+TGG | - | chr1.4:3399666-3399685 | None:intergenic | 35.0% | |
| TCTTGTAGCCAACTTTACTT+GGG | + | chr1.4:3399543-3399562 | MS.gene062770:intron | 35.0% | |
| TGCATTGGATAGAAAAGTTG+GGG | + | chr1.4:3399281-3399300 | MS.gene062770:intron | 35.0% | |
| TTACCCCACATTCTTAGATT+GGG | + | chr1.4:3400263-3400282 | MS.gene062770:intron | 35.0% | |
| TTCTCTCCATGAATAATGTC+TGG | + | chr1.4:3399657-3399676 | MS.gene062770:intron | 35.0% | |
| TTCTTGTAGCCAACTTTACT+TGG | + | chr1.4:3399542-3399561 | MS.gene062770:intron | 35.0% | |
| TTGCCTTTAACACTCTGAAT+AGG | - | chr1.4:3400654-3400673 | None:intergenic | 35.0% | |
| TTTAGCAACCAAGTACAACA+AGG | + | chr1.4:3401592-3401611 | MS.gene062770:CDS | 35.0% | |
| ! | AAACTTGCTCAGATGAATCT+AGG | - | chr1.4:3398346-3398365 | None:intergenic | 35.0% |
| ! | AACTTGCTCAGATGAATCTA+GGG | - | chr1.4:3398345-3398364 | None:intergenic | 35.0% |
| ! | CACAACTTGCTTAAATCCTA+TGG | - | chr1.4:3399137-3399156 | None:intergenic | 35.0% |
| ! | CGTTGATGAGTATACTGTTA+GGG | + | chr1.4:3398565-3398584 | MS.gene062770:CDS | 35.0% |
| ! | GAATCTTGCTTTAGGTGATT+TGG | + | chr1.4:3399334-3399353 | MS.gene062770:intron | 35.0% |
| ! | GATCCTATTCAGAGTGTTAA+AGG | + | chr1.4:3400648-3400667 | MS.gene062770:CDS | 35.0% |
| ! | TAGTTTGTGGATTAATCAGC+CGG | - | chr1.4:3400695-3400714 | None:intergenic | 35.0% |
| ! | TATTCAGAGTGTTAAAGGCA+AGG | + | chr1.4:3400653-3400672 | MS.gene062770:CDS | 35.0% |
| ! | TCATGATTTTTGCGCAATTC+AGG | + | chr1.4:3401559-3401578 | MS.gene062770:intron | 35.0% |
| ! | TCGTTGATGAGTATACTGTT+AGG | + | chr1.4:3398564-3398583 | MS.gene062770:CDS | 35.0% |
| ! | TTGGCAATTGCAAGTTTTTC+TGG | - | chr1.4:3401644-3401663 | None:intergenic | 35.0% |
| !! | CATAAGAAGAAATGGACTGA+TGG | + | chr1.4:3400968-3400987 | MS.gene062770:CDS | 35.0% |
| AAACCTTATCCCACTAAGTG+GGG | + | chr1.4:3400075-3400094 | MS.gene062770:intron | 40.0% | |
| AAGACACTCACTTGGATAGA+TGG | - | chr1.4:3400774-3400793 | None:intergenic | 40.0% | |
| ACGCGCTATGTCAAATATCT+AGG | - | chr1.4:3401224-3401243 | None:intergenic | 40.0% | |
| AGAACTAGGGATGATTGCAT+TGG | + | chr1.4:3399266-3399285 | MS.gene062770:intron | 40.0% | |
| ATAACAGCACTATCCACACA+AGG | - | chr1.4:3400539-3400558 | None:intergenic | 40.0% | |
| ATTGGTGCAAGCACTTGAAT+AGG | + | chr1.4:3400189-3400208 | MS.gene062770:intron | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | + | chr1.4:3400074-3400093 | MS.gene062770:intron | 40.0% | |
| CACACACTCACTGTAATCAA+AGG | + | chr1.4:3401518-3401537 | MS.gene062770:intron | 40.0% | |
| CATCCCAATCTAAGAATGTG+GGG | - | chr1.4:3400269-3400288 | None:intergenic | 40.0% | |
| CCAAATTAGAGATAGAGGGA+GGG | + | chr1.4:3399419-3399438 | MS.gene062770:intron | 40.0% | |
| CTATAGGCCAAACCATTAAG+AGG | + | chr1.4:3399451-3399470 | MS.gene062770:intron | 40.0% | |
| GACGTCCAAATTAGAGATAG+AGG | + | chr1.4:3399414-3399433 | MS.gene062770:intron | 40.0% | |
| GCGGAAAAGAGTTGAAACTT+TGG | + | chr1.4:3399565-3399584 | MS.gene062770:intron | 40.0% | |
| GGTGTACCTATGGAAGTTAT+GGG | + | chr1.4:3398524-3398543 | MS.gene062770:CDS | 40.0% | |
| TCCAAATTAGAGATAGAGGG+AGG | + | chr1.4:3399418-3399437 | MS.gene062770:intron | 40.0% | |
| TGGTGTACCTATGGAAGTTA+TGG | + | chr1.4:3398523-3398542 | MS.gene062770:CDS | 40.0% | |
| TGTGGACATTAACACACAAC+AGG | + | chr1.4:3399789-3399808 | MS.gene062770:CDS | 40.0% | |
| TTGGAGGTTCAATGCTACAA+CGG | - | chr1.4:3400229-3400248 | None:intergenic | 40.0% | |
| TTGTGTGTTAATGTCCACAC+CGG | - | chr1.4:3399788-3399807 | None:intergenic | 40.0% | |
| ! | AATATGATGATGAGCCTTGG+AGG | - | chr1.4:3400245-3400264 | None:intergenic | 40.0% |
| ! | GGTAATATGATGATGAGCCT+TGG | - | chr1.4:3400248-3400267 | None:intergenic | 40.0% |
| ! | TCCTTTTAGGCTCTTATCCA+TGG | + | chr1.4:3400869-3400888 | MS.gene062770:intron | 40.0% |
| ! | TGTGAACGATTTTGCTCACT+TGG | + | chr1.4:3401285-3401304 | MS.gene062770:intron | 40.0% |
| !! | AATAATGTCGGTTCAAGCCA+TGG | - | chr1.4:3400889-3400908 | None:intergenic | 40.0% |
| AAACCATTAAGCAACCCCTC+AGG | - | chr1.4:3401407-3401426 | None:intergenic | 45.0% | |
| AATTAGAGATAGAGGGAGGG+AGG | + | chr1.4:3399422-3399441 | MS.gene062770:intron | 45.0% | |
| AGCTGGGTGGTATAAACTTG+TGG | + | chr1.4:3400311-3400330 | MS.gene062770:intron | 45.0% | |
| AGGTGGTCATTGATGCTTTC+CGG | + | chr1.4:3400673-3400692 | MS.gene062770:CDS | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | + | chr1.4:3400073-3400092 | MS.gene062770:intron | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | - | chr1.4:3400076-3400095 | None:intergenic | 45.0% | |
| CCCTCCCTCTATCTCTAATT+TGG | - | chr1.4:3399422-3399441 | None:intergenic | 45.0% | |
| GCCATGGATAAGAGCCTAAA+AGG | - | chr1.4:3400873-3400892 | None:intergenic | 45.0% | |
| GTGAGTGTGTGTCTGTTCAA+TGG | - | chr1.4:3401509-3401528 | None:intergenic | 45.0% | |
| TACCAACCTACAACCATCTC+TGG | - | chr1.4:3399733-3399752 | None:intergenic | 45.0% | |
| TACTAGCAAGCTAGCTAGCT+GGG | + | chr1.4:3400295-3400314 | MS.gene062770:intron | 45.0% | |
| TGACCCAGCATCATAGTTTG+TGG | - | chr1.4:3400708-3400727 | None:intergenic | 45.0% | |
| TGCAAGCACTTGAATAGGAG+AGG | + | chr1.4:3400194-3400213 | MS.gene062770:intron | 45.0% | |
| TGGAGGTTCAATGCTACAAC+GGG | - | chr1.4:3400228-3400247 | None:intergenic | 45.0% | |
| TGTAGCCAACTTTACTTGGG+CGG | + | chr1.4:3399546-3399565 | MS.gene062770:intron | 45.0% | |
| TTAGATGAGTTGTGTCTCGG+AGG | + | chr1.4:3398806-3398825 | MS.gene062770:intron | 45.0% | |
| TTAGATGAGTTTGGTCTCGG+AGG | + | chr1.4:3398912-3398931 | MS.gene062770:intron | 45.0% | |
| TTGCAATTGCCAATGTCGGA+AGG | + | chr1.4:3401651-3401670 | MS.gene062770:CDS | 45.0% | |
| TTGCTCAGATGAATCTAGGG+TGG | - | chr1.4:3398342-3398361 | None:intergenic | 45.0% | |
| TTGGTGAATTTAGGTAGGGC+TGG | + | chr1.4:3398503-3398522 | MS.gene062770:intron | 45.0% | |
| TTTCTGTTTCAGGCCAGAGA+TGG | + | chr1.4:3399717-3399736 | MS.gene062770:intron | 45.0% | |
| ! | CTTTTCCGCCCAAGTAAAGT+TGG | - | chr1.4:3399554-3399573 | None:intergenic | 45.0% |
| ! | GGTTGGTATCATTCACATCC+TGG | + | chr1.4:3399745-3399764 | MS.gene062770:CDS | 45.0% |
| ! | GTTGTAGCATTGAACCTCCA+AGG | + | chr1.4:3400228-3400247 | MS.gene062770:intron | 45.0% |
| ! | TCAGAGTGTTAAAGGCAAGG+TGG | + | chr1.4:3400656-3400675 | MS.gene062770:CDS | 45.0% |
| ! | TGCTCAGATGAATCTAGGGT+GGG | - | chr1.4:3398341-3398360 | None:intergenic | 45.0% |
| !! | ATCCACACAAGGCATTGTCA+TGG | - | chr1.4:3400528-3400547 | None:intergenic | 45.0% |
| !! | GAGCATTTTGAGAAGTGCGA+GGG | - | chr1.4:3398378-3398397 | None:intergenic | 45.0% |
| !! | GGATAGATGGCTTGTTCAGA+TGG | - | chr1.4:3400761-3400780 | None:intergenic | 45.0% |
| !! | GTTTTTGCTATGCCTCAGAG+TGG | + | chr1.4:3398596-3398615 | MS.gene062770:CDS | 45.0% |
| !! | TGAGCATTTTGAGAAGTGCG+AGG | - | chr1.4:3398379-3398398 | None:intergenic | 45.0% |
| AAGTTGGAGGTTGTCTGTCG+CGG | - | chr1.4:3400735-3400754 | None:intergenic | 50.0% | |
| AATTGCCAATGTCGGAAGGC+AGG | + | chr1.4:3401655-3401674 | MS.gene062770:CDS | 50.0% | |
| ACTAAGTGGGGTCAGGTACA+TGG | + | chr1.4:3400087-3400106 | MS.gene062770:intron | 50.0% | |
| AGACCTGAGGGGTTGCTTAA+TGG | + | chr1.4:3401401-3401420 | MS.gene062770:intron | 50.0% | |
| AGCCATGACAATGCCTTGTG+TGG | + | chr1.4:3400523-3400542 | MS.gene062770:intron | 50.0% | |
| ATGTACCTGACCCCACTTAG+TGG | - | chr1.4:3400088-3400107 | None:intergenic | 50.0% | |
| ATGTTGTGGGTGTAGACCTG+AGG | + | chr1.4:3401388-3401407 | MS.gene062770:intron | 50.0% | |
| CAAAGAATGTTTGCGGGTGC+AGG | + | chr1.4:3398281-3398300 | MS.gene062770:CDS | 50.0% | |
| CAAGTACAACAAGGCAGTGC+AGG | + | chr1.4:3401601-3401620 | MS.gene062770:CDS | 50.0% | |
| CGACAGACAACCTCCAACTT+GGG | + | chr1.4:3400735-3400754 | MS.gene062770:CDS | 50.0% | |
| CTAACACCAGTACCACTCTG+AGG | - | chr1.4:3398611-3398630 | None:intergenic | 50.0% | |
| CTACTAGCAAGCTAGCTAGC+TGG | + | chr1.4:3400294-3400313 | MS.gene062770:intron | 50.0% | |
| CTTGTTCAGATGGCCCAAGT+TGG | - | chr1.4:3400751-3400770 | None:intergenic | 50.0% | |
| GGACTGATGGTTTGACACTC+AGG | + | chr1.4:3400981-3401000 | MS.gene062770:CDS | 50.0% | |
| GGGAGGGAGGAACTTTCTAT+AGG | + | chr1.4:3399435-3399454 | MS.gene062770:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | - | chr1.4:3400081-3400100 | None:intergenic | 50.0% | |
| TGTACCTGACCCCACTTAGT+GGG | - | chr1.4:3400087-3400106 | None:intergenic | 50.0% | |
| TGTTGTGGGTGTAGACCTGA+GGG | + | chr1.4:3401389-3401408 | MS.gene062770:intron | 50.0% | |
| TTATCCCACTAAGTGGGGTC+AGG | + | chr1.4:3400080-3400099 | MS.gene062770:intron | 50.0% | |
| TTCAGGCCAGAGATGGTTGT+AGG | + | chr1.4:3399724-3399743 | MS.gene062770:intron | 50.0% | |
| ! | CTCAGATGAATCTAGGGTGG+GGG | - | chr1.4:3398339-3398358 | None:intergenic | 50.0% |
| ! | CTGCACTGCCTTGTTGTACT+TGG | - | chr1.4:3401603-3401622 | None:intergenic | 50.0% |
| ! | GCTCAGATGAATCTAGGGTG+GGG | - | chr1.4:3398340-3398359 | None:intergenic | 50.0% |
| !! | GGATGCTAAGAAGCACCTTG+AGG | + | chr1.4:3401676-3401695 | MS.gene062770:CDS | 50.0% |
| !! | GGCTTTAAATCAACGGGCAG+TGG | + | chr1.4:3400614-3400633 | MS.gene062770:CDS | 50.0% |
| ACTGCGCTCTTTGAGCCTCA+AGG | - | chr1.4:3398958-3398977 | None:intergenic | 55.0% | |
| AGAATGTTTGCGGGTGCAGG+TGG | + | chr1.4:3398284-3398303 | MS.gene062770:CDS | 55.0% | |
| AGCATCCTGCCTTCCGACAT+TGG | - | chr1.4:3401663-3401682 | None:intergenic | 55.0% | |
| CACATCCTGGATTTGGCTGC+TGG | + | chr1.4:3399758-3399777 | MS.gene062770:CDS | 55.0% | |
| GAAAGCCAGCAGCCAAATCC+AGG | - | chr1.4:3399766-3399785 | None:intergenic | 55.0% | |
| GCGACAGACAACCTCCAACT+TGG | + | chr1.4:3400734-3400753 | MS.gene062770:CDS | 55.0% | |
| GCTATGCCTCAGAGTGGTAC+TGG | + | chr1.4:3398602-3398621 | MS.gene062770:CDS | 55.0% | |
| GGCCAGAGATGGTTGTAGGT+TGG | + | chr1.4:3399728-3399747 | MS.gene062770:intron | 55.0% | |
| GTACAACAAGGCAGTGCAGG+AGG | + | chr1.4:3401604-3401623 | MS.gene062770:CDS | 55.0% | |
| GTTGTGGGTGTAGACCTGAG+GGG | + | chr1.4:3401390-3401409 | MS.gene062770:intron | 55.0% | |
| TAGCAAGCTAGCTAGCTGGG+TGG | + | chr1.4:3400298-3400317 | MS.gene062770:intron | 55.0% | |
| TCGGAGGCTCACTTGGGTTA+GGG | + | chr1.4:3398928-3398947 | MS.gene062770:intron | 55.0% | |
| TTGGTCTCGGAGGCTCACTT+GGG | + | chr1.4:3398922-3398941 | MS.gene062770:intron | 55.0% | |
| TTTGGTCTCGGAGGCTCACT+TGG | + | chr1.4:3398921-3398940 | MS.gene062770:intron | 55.0% | |
| ! | AGGCTCACTTGGGTTAGGGA+AGG | + | chr1.4:3398932-3398951 | MS.gene062770:intron | 55.0% |
| ! | AGGTAGGGCTGGTGTACCTA+TGG | + | chr1.4:3398514-3398533 | MS.gene062770:intron | 55.0% |
| ! | GAATCTAGGGTGGGGGAATC+CGG | - | chr1.4:3398332-3398351 | None:intergenic | 55.0% |
| ! | GTTCAGATGGCCCAAGTTGG+AGG | - | chr1.4:3400748-3400767 | None:intergenic | 55.0% |
| ! | TTGGGTTAGGGAAGGCCTTG+AGG | + | chr1.4:3398940-3398959 | MS.gene062770:intron | 55.0% |
| !! | GGATTTGGCTGCTGGCTTTC+CGG | + | chr1.4:3399766-3399785 | MS.gene062770:CDS | 55.0% |
| CATGAAGCCTGCCCTGATCC+GGG | - | chr1.4:3398836-3398855 | None:intergenic | 60.0% | |
| CCATGAAGCCTGCCCTGATC+CGG | - | chr1.4:3398837-3398856 | None:intergenic | 60.0% | |
| CTCGGAGGCTCACTTGGGTT+AGG | + | chr1.4:3398927-3398946 | MS.gene062770:intron | 60.0% | |
| TTGTGTCTCGGAGGCTCACC+CGG | + | chr1.4:3398815-3398834 | MS.gene062770:intron | 60.0% | |
| ! | ACTCGGTGGTCATCCACCAC+CGG | + | chr1.4:3398310-3398329 | MS.gene062770:CDS | 60.0% |
| CCGGATCAGGGCAGGCTTCA+TGG | + | chr1.4:3398834-3398853 | MS.gene062770:intron | 65.0% | |
| TCAACGGGCAGTGGCTGTCG+TGG | + | chr1.4:3400623-3400642 | MS.gene062770:CDS | 65.0% | |
| TCGGAGGCTCACCCGGATCA+GGG | + | chr1.4:3398822-3398841 | MS.gene062770:intron | 65.0% | |
| ! | TCTAGGGTGGGGGAATCCGG+TGG | - | chr1.4:3398329-3398348 | None:intergenic | 65.0% |
| !! | TGGCTGCTGGCTTTCCGGTG+TGG | + | chr1.4:3399771-3399790 | MS.gene062770:CDS | 65.0% |
| ACGGGCAGTGGCTGTCGTGG+TGG | + | chr1.4:3400626-3400645 | MS.gene062770:CDS | 70.0% | |
| AGGCTCACCCGGATCAGGGC+AGG | + | chr1.4:3398826-3398845 | MS.gene062770:intron | 70.0% | |
| AGGGTGGGGGAATCCGGTGG+TGG | - | chr1.4:3398326-3398345 | None:intergenic | 70.0% | |
| CTCGGAGGCTCACCCGGATC+AGG | + | chr1.4:3398821-3398840 | MS.gene062770:intron | 70.0% | |
| ! | GCGGGTGCAGGTGGAGCACT+CGG | + | chr1.4:3398293-3398312 | MS.gene062770:CDS | 70.0% |
| ! | GGTGCAGGTGGAGCACTCGG+TGG | + | chr1.4:3398296-3398315 | MS.gene062770:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 3398260 | 3401772 | 3398260 | ID=MS.gene062770 |
| chr1.4 | mRNA | 3398260 | 3401772 | 3398260 | ID=MS.gene062770.t1;Parent=MS.gene062770 |
| chr1.4 | exon | 3398260 | 3398404 | 3398260 | ID=MS.gene062770.t1.exon1;Parent=MS.gene062770.t1 |
| chr1.4 | CDS | 3398260 | 3398404 | 3398260 | ID=cds.MS.gene062770.t1;Parent=MS.gene062770.t1 |
| chr1.4 | exon | 3398516 | 3398693 | 3398516 | ID=MS.gene062770.t1.exon2;Parent=MS.gene062770.t1 |
| chr1.4 | CDS | 3398516 | 3398693 | 3398516 | ID=cds.MS.gene062770.t1;Parent=MS.gene062770.t1 |
| chr1.4 | exon | 3399729 | 3399810 | 3399729 | ID=MS.gene062770.t1.exon3;Parent=MS.gene062770.t1 |
| chr1.4 | CDS | 3399729 | 3399810 | 3399729 | ID=cds.MS.gene062770.t1;Parent=MS.gene062770.t1 |
| chr1.4 | exon | 3400606 | 3400782 | 3400606 | ID=MS.gene062770.t1.exon4;Parent=MS.gene062770.t1 |
| chr1.4 | CDS | 3400606 | 3400782 | 3400606 | ID=cds.MS.gene062770.t1;Parent=MS.gene062770.t1 |
| chr1.4 | exon | 3400878 | 3401045 | 3400878 | ID=MS.gene062770.t1.exon5;Parent=MS.gene062770.t1 |
| chr1.4 | CDS | 3400878 | 3401045 | 3400878 | ID=cds.MS.gene062770.t1;Parent=MS.gene062770.t1 |
| chr1.4 | exon | 3401581 | 3401772 | 3401581 | ID=MS.gene062770.t1.exon6;Parent=MS.gene062770.t1 |
| chr1.4 | CDS | 3401581 | 3401772 | 3401581 | ID=cds.MS.gene062770.t1;Parent=MS.gene062770.t1 |
| Gene Sequence |
| Protein sequence |
