Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004328.t1 | XP_003593794.1 | 100 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 1.70E-172 | 615.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004328.t1 | Q9LT08 | 96.1 | 309 | 11 | 1 | 1 | 309 | 1 | 308 | 9.2e-167 | 587.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004328.t1 | G7ILL5 | 100.0 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 1.2e-172 | 615.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004328.t1 | MTR_2g017680 | 100.000 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 0.0 | 643 |
MS.gene004328.t1 | MTR_1g019930 | 99.032 | 310 | 2 | 1 | 1 | 309 | 4 | 313 | 0.0 | 636 |
MS.gene004328.t1 | MTR_3g108790 | 42.029 | 207 | 107 | 9 | 29 | 230 | 58 | 256 | 2.58e-35 | 131 |
MS.gene004328.t1 | MTR_8g006640 | 62.857 | 35 | 13 | 0 | 98 | 132 | 29 | 63 | 2.26e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004328.t1 | AT5G23540 | 96.117 | 309 | 11 | 1 | 1 | 309 | 1 | 308 | 0.0 | 615 |
MS.gene004328.t1 | AT5G23540 | 97.683 | 259 | 6 | 0 | 51 | 309 | 1 | 259 | 0.0 | 528 |
MS.gene004328.t1 | AT1G71230 | 40.566 | 212 | 103 | 8 | 29 | 230 | 57 | 255 | 4.21e-34 | 128 |
MS.gene004328.t1 | AT1G22920 | 39.806 | 206 | 113 | 8 | 29 | 230 | 57 | 255 | 1.54e-32 | 124 |
MS.gene004328.t1 | AT1G22920 | 39.806 | 206 | 113 | 8 | 29 | 230 | 57 | 255 | 2.03e-32 | 123 |
MS.gene004328.t1 | AT5G27607 | 76.596 | 47 | 11 | 0 | 96 | 142 | 70 | 116 | 2.18e-19 | 82.8 |
Find 82 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACAGTCTGTTCATTAGTTT+TGG | 0.224880 | 2.3:-68603181 | None:intergenic |
TTGAACAGCCTTGTTGTATT+TGG | 0.268596 | 2.3:-68603517 | None:intergenic |
GAATCTAGGGTTGGGGAATC+TGG | 0.280797 | 2.3:-68600488 | None:intergenic |
TGGTGTACCCATGGAGGTTA+TGG | 0.283269 | 2.3:+68600749 | MS.gene004328:CDS |
GATCCAATTCAAAGTGTTAA+AGG | 0.297544 | 2.3:+68602793 | MS.gene004328:CDS |
TTCATTCTTCCTGTAATTGA+TGG | 0.301331 | 2.3:-68603079 | None:intergenic |
GGATTTGGCTGTTGGTTGTC+TGG | 0.310169 | 2.3:+68601269 | MS.gene004328:CDS |
ATTCCATAGCCATCAATTAC+AGG | 0.318521 | 2.3:+68603070 | MS.gene004328:CDS |
TTTCCTTTAACACTTTGAAT+TGG | 0.338465 | 2.3:-68602796 | None:intergenic |
GGAGGTTATGGGTTTGATGC+TGG | 0.342706 | 2.3:+68600761 | MS.gene004328:CDS |
TATCATTCACATCCTGGATT+TGG | 0.349236 | 2.3:+68601254 | MS.gene004328:CDS |
AGACTTGTTCGGATGAATCT+AGG | 0.351262 | 2.3:-68600502 | None:intergenic |
ATGCTCTTCGAGGTGCTTCT+TGG | 0.355935 | 2.3:-68603598 | None:intergenic |
CTTGATATGCTCAAACAAAC+TGG | 0.363131 | 2.3:+68600894 | MS.gene004328:CDS |
CTCTTTAGGCATTGATCCAT+GGG | 0.379104 | 2.3:+68603031 | MS.gene004328:intron |
GGTGTACCCATGGAGGTTAT+GGG | 0.387878 | 2.3:+68600750 | MS.gene004328:CDS |
CACATCCTGGATTTGGCTGT+TGG | 0.391614 | 2.3:+68601261 | MS.gene004328:CDS |
TCTAACATCGTTCAAACTCT+TGG | 0.396438 | 2.3:+68603639 | MS.gene004328:CDS |
TTTGATGCTGGGAGAATTTG+TGG | 0.400300 | 2.3:+68600773 | MS.gene004328:CDS |
TCTGAATAAACCATCCATTC+AGG | 0.402001 | 2.3:+68602906 | MS.gene004328:CDS |
AAGGCAGACAACTTCCAATC+TGG | 0.404764 | 2.3:+68602879 | MS.gene004328:CDS |
GTTCGGATGAATCTAGGGTT+GGG | 0.405436 | 2.3:-68600496 | None:intergenic |
TCTCTTTAGGCATTGATCCA+TGG | 0.408154 | 2.3:+68603030 | MS.gene004328:intron |
ATTTGCTATTGCAAGTTTCT+CGG | 0.414356 | 2.3:-68603559 | None:intergenic |
AGATTGGAAGTTGTCTGCCT+TGG | 0.433636 | 2.3:-68602877 | None:intergenic |
CATTGATCCATGGGTTGAAC+CGG | 0.440732 | 2.3:+68603040 | MS.gene004328:CDS |
CAAAGAATGTTCGCAGGTGC+AGG | 0.448769 | 2.3:+68600443 | MS.gene004328:CDS |
GGCTGGTATCATTCACATCC+TGG | 0.450530 | 2.3:+68601248 | MS.gene004328:CDS |
TTTGCTATTGCAAGTTTCTC+GGG | 0.452950 | 2.3:-68603558 | None:intergenic |
GAGGTTATGGGTTTGATGCT+GGG | 0.472362 | 2.3:+68600762 | MS.gene004328:CDS |
AATTTGAGACATGCTCTTCG+AGG | 0.480365 | 2.3:-68603608 | None:intergenic |
TGCAGACCAGAGATGGTTGT+TGG | 0.483028 | 2.3:+68601227 | MS.gene004328:intron |
GCAATGCCACAGAGTGGAAC+TGG | 0.486016 | 2.3:+68600828 | MS.gene004328:CDS |
CTTCCTGTAATTGATGGCTA+TGG | 0.489960 | 2.3:-68603073 | None:intergenic |
AACTAATGAACAGACTGTTC+AGG | 0.493790 | 2.3:+68603185 | MS.gene004328:CDS |
TACCAGCCAACAACCATCTC+TGG | 0.496380 | 2.3:-68601233 | None:intergenic |
ATCTGGAGGTGGATGACCTA+GGG | 0.498063 | 2.3:-68600471 | None:intergenic |
GGAGGAGATGTAGACTTGTT+CGG | 0.498929 | 2.3:-68600513 | None:intergenic |
TTTATTCAGATGTCCCAGAT+TGG | 0.501681 | 2.3:-68602893 | None:intergenic |
TTATCTATAATAGGCAGAGC+TGG | 0.504090 | 2.3:+68600729 | MS.gene004328:intron |
GCAGGTGCAGGTGGAGCCCT+AGG | 0.507158 | 2.3:+68600455 | MS.gene004328:CDS |
AAACTTGCAATAGCAAATGT+TGG | 0.510302 | 2.3:+68603564 | MS.gene004328:CDS |
TGTCCAAGCATCATTGTCTG+TGG | 0.515753 | 2.3:-68602850 | None:intergenic |
GACTTGTTCGGATGAATCTA+GGG | 0.516752 | 2.3:-68600501 | None:intergenic |
GACAACCAACAGCCAAATCC+AGG | 0.516917 | 2.3:-68601266 | None:intergenic |
TGTTCGGATGAATCTAGGGT+TGG | 0.518815 | 2.3:-68600497 | None:intergenic |
TTCGGATGAATCTAGGGTTG+GGG | 0.521639 | 2.3:-68600495 | None:intergenic |
GGACTGATGGCTTGACACTT+AGG | 0.529421 | 2.3:+68603142 | MS.gene004328:CDS |
GAGAGCCGTGGCTGTAGTTG+TGG | 0.532971 | 2.3:+68602771 | MS.gene004328:CDS |
AATAATGCCGGTTCAACCCA+TGG | 0.533545 | 2.3:-68603047 | None:intergenic |
CATCAAACCCATAACCTCCA+TGG | 0.537981 | 2.3:-68600757 | None:intergenic |
GAGTTACGCACCTGAATGGA+TGG | 0.539427 | 2.3:-68602916 | None:intergenic |
AGGCAGACAACTTCCAATCT+GGG | 0.548081 | 2.3:+68602880 | MS.gene004328:CDS |
AGGGTTGGGGAATCTGGAGG+TGG | 0.550028 | 2.3:-68600482 | None:intergenic |
AATCTGGAGGTGGATGACCT+AGG | 0.557259 | 2.3:-68600472 | None:intergenic |
CATCTTGAGAAGTGCGAGGG+AGG | 0.557965 | 2.3:-68600531 | None:intergenic |
GACCAGAGATGGTTGTTGGC+TGG | 0.560653 | 2.3:+68601231 | MS.gene004328:intron |
AATCCACAGACAATGATGCT+TGG | 0.566917 | 2.3:+68602847 | MS.gene004328:CDS |
AGGCAGAGCTGGTGTACCCA+TGG | 0.574474 | 2.3:+68600740 | MS.gene004328:intron |
AGAATGTTCGCAGGTGCAGG+TGG | 0.582287 | 2.3:+68600446 | MS.gene004328:CDS |
AATTCAAAGTGTTAAAGGAA+AGG | 0.587669 | 2.3:+68602798 | MS.gene004328:CDS |
ATACAACAAGGCTGTTCAAG+AGG | 0.587968 | 2.3:+68603521 | MS.gene004328:CDS |
ATTGTGTTGCAGACCAGAGA+TGG | 0.597906 | 2.3:+68601220 | MS.gene004328:intron |
ATCAAACCCATAACCTCCAT+GGG | 0.598917 | 2.3:-68600756 | None:intergenic |
TTCATCGATTCATCATGGAA+AGG | 0.606178 | 2.3:+68600417 | None:intergenic |
ATATGCTCAAACAAACTGGA+AGG | 0.606861 | 2.3:+68600898 | MS.gene004328:CDS |
TCAAAGTGTTAAAGGAAAGG+TGG | 0.613319 | 2.3:+68602801 | MS.gene004328:CDS |
TGGCTATGGAATAATAATGC+CGG | 0.615459 | 2.3:-68603059 | None:intergenic |
AGGCTTCAAAGAATGTTCGC+AGG | 0.619756 | 2.3:+68600437 | MS.gene004328:CDS |
AAGCATCTTGAGAAGTGCGA+GGG | 0.629521 | 2.3:-68600534 | None:intergenic |
GGCTTTGAATCAGAGAGCCG+TGG | 0.631150 | 2.3:+68602759 | MS.gene004328:CDS |
TGGATCCACAACTACAGCCA+CGG | 0.635765 | 2.3:-68602776 | None:intergenic |
CTTAGCTACCAAATACAACA+AGG | 0.639370 | 2.3:+68603509 | MS.gene004328:CDS |
TGTTGACATCAATACACAGC+AGG | 0.639510 | 2.3:+68601292 | MS.gene004328:CDS |
TCTAGGGTTGGGGAATCTGG+AGG | 0.640784 | 2.3:-68600485 | None:intergenic |
TAAGCATCTTGAGAAGTGCG+AGG | 0.643347 | 2.3:-68600535 | None:intergenic |
TTACAGGAAGAATGAACTCG+AGG | 0.664198 | 2.3:+68603086 | MS.gene004328:CDS |
CTTCTCAAGATGCTTAAACA+CGG | 0.691386 | 2.3:+68600542 | MS.gene004328:CDS |
CTAACACCAGTTCCACTCTG+TGG | 0.696288 | 2.3:-68600834 | None:intergenic |
TGATGCTTGGACAAGAACCA+AGG | 0.701272 | 2.3:+68602860 | MS.gene004328:CDS |
CAGAGCTGGTGTACCCATGG+AGG | 0.703338 | 2.3:+68600743 | MS.gene004328:CDS |
GTGTTTGCAATGCCACAGAG+TGG | 0.719761 | 2.3:+68600822 | MS.gene004328:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGCTTTTAAAAAAATAAAAT+CGG | + | chr2.3:68602126-68602145 | MS.gene004328:intron | 10.0% |
!!! | ATTTTAACTTAATTAAATCA+TGG | + | chr2.3:68600660-68600679 | MS.gene004328:intron | 10.0% |
!!! | GTTTTTTTTTTATCTATAAT+AGG | + | chr2.3:68600720-68600739 | MS.gene004328:intron | 10.0% |
!!! | TTTTAACTTAATTAAATCAT+GGG | + | chr2.3:68600661-68600680 | MS.gene004328:intron | 10.0% |
!! | AAATGAGTTTGATTAATTTA+AGG | + | chr2.3:68602257-68602276 | MS.gene004328:intron | 15.0% |
!!! | TAAGATTTTCATTCATTAAA+TGG | - | chr2.3:68602377-68602396 | None:intergenic | 15.0% |
!!! | TTTTTTTGGATGTATTATTT+TGG | + | chr2.3:68602972-68602991 | MS.gene004328:intron | 15.0% |
!!! | TTTTTTTTTTTTTGAATCGA+TGG | - | chr2.3:68602562-68602581 | None:intergenic | 15.0% |
!! | AATTTCAATTATCAAGACAA+TGG | - | chr2.3:68602520-68602539 | None:intergenic | 20.0% |
!! | AGTTATTAATTTACTTTCAG+TGG | + | chr2.3:68601443-68601462 | MS.gene004328:intron | 20.0% |
!! | CTTATATATAAGCACTTATA+TGG | + | chr2.3:68601138-68601157 | MS.gene004328:intron | 20.0% |
!! | GTTTATTTGATTAATCAGAT+AGG | - | chr2.3:68603246-68603265 | None:intergenic | 20.0% |
!! | TTAATCTTCACAAAAAGAAA+TGG | + | chr2.3:68603121-68603140 | MS.gene004328:CDS | 20.0% |
!! | TTTATAAAATAGCCATTAGT+TGG | - | chr2.3:68602604-68602623 | None:intergenic | 20.0% |
!!! | AAAATATTTTCTGTTATCAG+TGG | + | chr2.3:68602487-68602506 | MS.gene004328:intron | 20.0% |
!!! | AACATGAATAACACAATTTT+TGG | - | chr2.3:68601188-68601207 | None:intergenic | 20.0% |
!!! | AAGTCAATATTTTTTAAGCA+TGG | + | chr2.3:68602419-68602438 | MS.gene004328:intron | 20.0% |
!!! | ACTTGTTTCTAATTAGTTAT+TGG | + | chr2.3:68602684-68602703 | MS.gene004328:intron | 20.0% |
!!! | AGTTGTAATCTTGTTTTTAA+AGG | + | chr2.3:68602316-68602335 | MS.gene004328:intron | 20.0% |
!!! | ATCAACGTAATTCAAATTTT+TGG | - | chr2.3:68602627-68602646 | None:intergenic | 20.0% |
!!! | CCGATTTTTAGATTTAAAAA+CGG | + | chr2.3:68603287-68603306 | MS.gene004328:intron | 20.0% |
!!! | CCGTTTTTAAATCTAAAAAT+CGG | - | chr2.3:68603290-68603309 | None:intergenic | 20.0% |
!!! | CGATATTCATACAATTTTTT+TGG | + | chr2.3:68602958-68602977 | MS.gene004328:intron | 20.0% |
!!! | GTATTTCATTTTCAAAAGTA+GGG | + | chr2.3:68600683-68600702 | MS.gene004328:intron | 20.0% |
!!! | GTTGTAATCTTGTTTTTAAA+GGG | + | chr2.3:68602317-68602336 | MS.gene004328:intron | 20.0% |
!!! | TATTATAATTTTTGACGACA+TGG | + | chr2.3:68601414-68601433 | MS.gene004328:intron | 20.0% |
!!! | TCTCAATTAATTTGAAATGT+AGG | + | chr2.3:68603476-68603495 | MS.gene004328:intron | 20.0% |
!!! | TTTTAAAAGCTGTTGAAATT+TGG | - | chr2.3:68602117-68602136 | None:intergenic | 20.0% |
! | ATAAGTTTCATAAGCTTTCA+GGG | + | chr2.3:68603406-68603425 | MS.gene004328:intron | 25.0% |
! | ATTATGATGAGACTGATAAT+AGG | - | chr2.3:68601710-68601729 | None:intergenic | 25.0% |
! | ATTGAGATCTATTAGTATCT+AGG | - | chr2.3:68603463-68603482 | None:intergenic | 25.0% |
! | CAAAACCCTAATTATGAAAT+TGG | - | chr2.3:68600607-68600626 | None:intergenic | 25.0% |
! | CACTAAAATCAAAACTATCT+AGG | - | chr2.3:68601392-68601411 | None:intergenic | 25.0% |
! | CTTTAACCTATTCAAATCAT+GGG | + | chr2.3:68600577-68600596 | MS.gene004328:intron | 25.0% |
! | GCTATCCAATTTCATAATTA+GGG | + | chr2.3:68600599-68600618 | MS.gene004328:intron | 25.0% |
! | GTTTCTAATTAGTTATTGGT+TGG | + | chr2.3:68602688-68602707 | MS.gene004328:intron | 25.0% |
! | TATAAGTTTCATAAGCTTTC+AGG | + | chr2.3:68603405-68603424 | MS.gene004328:intron | 25.0% |
! | TCTTTAACCTATTCAAATCA+TGG | + | chr2.3:68600576-68600595 | MS.gene004328:intron | 25.0% |
! | TTCAAATAAGTCAATCCAAA+CGG | - | chr2.3:68600967-68600986 | None:intergenic | 25.0% |
! | TTGAGATCTATTAGTATCTA+GGG | - | chr2.3:68603462-68603481 | None:intergenic | 25.0% |
! | TTTCCAAAAGAGAGTAAATT+AGG | - | chr2.3:68601564-68601583 | None:intergenic | 25.0% |
! | TTTCCTTTAACACTTTGAAT+TGG | - | chr2.3:68602799-68602818 | None:intergenic | 25.0% |
!! | AATCCAAAGTATTTATGTGT+CGG | + | chr2.3:68601361-68601380 | MS.gene004328:intron | 25.0% |
!! | AATTCAAAGTGTTAAAGGAA+AGG | + | chr2.3:68602798-68602817 | MS.gene004328:CDS | 25.0% |
!! | GGTATTTCATTTTCAAAAGT+AGG | + | chr2.3:68600682-68600701 | MS.gene004328:intron | 25.0% |
!! | TCATAACTGTTAGATTTTGT+CGG | + | chr2.3:68602349-68602368 | MS.gene004328:intron | 25.0% |
!!! | CTTGTTTTTAAAGGGATTTT+AGG | + | chr2.3:68602325-68602344 | MS.gene004328:intron | 25.0% |
!!! | TATTGACTTTCTAAGAAATC+AGG | - | chr2.3:68602408-68602427 | None:intergenic | 25.0% |
AAAATACCAAGTTTGAACTC+TGG | - | chr2.3:68601902-68601921 | None:intergenic | 30.0% | |
AAACAAGATTACAACTGCAA+TGG | - | chr2.3:68602312-68602331 | None:intergenic | 30.0% | |
AAACTTGCAATAGCAAATGT+TGG | + | chr2.3:68603564-68603583 | MS.gene004328:CDS | 30.0% | |
ATAACACTTGTTTGAGCTTA+TGG | + | chr2.3:68601000-68601019 | MS.gene004328:intron | 30.0% | |
CTAATTCATCCTTACAAAAC+TGG | - | chr2.3:68602091-68602110 | None:intergenic | 30.0% | |
GACACATAAATACTTTGGAT+TGG | - | chr2.3:68601362-68601381 | None:intergenic | 30.0% | |
GGCTATCCAATTTCATAATT+AGG | + | chr2.3:68600598-68600617 | MS.gene004328:intron | 30.0% | |
GTATCATATTACCTCTCTTT+AGG | + | chr2.3:68603017-68603036 | MS.gene004328:intron | 30.0% | |
GTGGAAAGAACATTAGTTAA+TGG | + | chr2.3:68601590-68601609 | MS.gene004328:intron | 30.0% | |
TATAAGCACTTATATGGCTA+AGG | + | chr2.3:68601144-68601163 | MS.gene004328:intron | 30.0% | |
TGCTAAGATCTGTGAATTTA+AGG | + | chr2.3:68600940-68600959 | MS.gene004328:intron | 30.0% | |
TTCATTCTTCCTGTAATTGA+TGG | - | chr2.3:68603082-68603101 | None:intergenic | 30.0% | |
! | AAATACTTTGGATTGGACAA+TGG | - | chr2.3:68601355-68601374 | None:intergenic | 30.0% |
! | AAGTTTTCATTTAGGTCTAG+TGG | + | chr2.3:68602649-68602668 | MS.gene004328:intron | 30.0% |
! | AGAGTTCAAACTTGGTATTT+TGG | + | chr2.3:68601901-68601920 | MS.gene004328:intron | 30.0% |
! | ATAAAATCGGCATTGAAATC+TGG | + | chr2.3:68602139-68602158 | MS.gene004328:intron | 30.0% |
! | ATAACTGTTAGATTTTGTCG+GGG | + | chr2.3:68602351-68602370 | MS.gene004328:intron | 30.0% |
! | ATTAAGAGCTCCTTATTTGA+GGG | - | chr2.3:68602459-68602478 | None:intergenic | 30.0% |
! | ATTTTGCTGAACACTCTTTT+TGG | + | chr2.3:68601536-68601555 | MS.gene004328:intron | 30.0% |
! | CATAACTGTTAGATTTTGTC+GGG | + | chr2.3:68602350-68602369 | MS.gene004328:intron | 30.0% |
! | GATCCAATTCAAAGTGTTAA+AGG | + | chr2.3:68602793-68602812 | MS.gene004328:CDS | 30.0% |
! | GTTCCTAATTTACTCTCTTT+TGG | + | chr2.3:68601558-68601577 | MS.gene004328:intron | 30.0% |
! | GTTGATCGAAGTTTTCATTT+AGG | + | chr2.3:68602641-68602660 | MS.gene004328:intron | 30.0% |
! | TAATTTTTGACGACATGGTT+TGG | + | chr2.3:68601419-68601438 | MS.gene004328:intron | 30.0% |
!! | AACAGTCTGTTCATTAGTTT+TGG | - | chr2.3:68603184-68603203 | None:intergenic | 30.0% |
!! | ATTTGCTATTGCAAGTTTCT+CGG | - | chr2.3:68603562-68603581 | None:intergenic | 30.0% |
!! | CAGTTTTGTAAGGATGAATT+AGG | + | chr2.3:68602089-68602108 | MS.gene004328:intron | 30.0% |
!! | TCTCTTTTGGAAAAGTTTTG+TGG | + | chr2.3:68601571-68601590 | MS.gene004328:intron | 30.0% |
AACTAATGAACAGACTGTTC+AGG | + | chr2.3:68603185-68603204 | MS.gene004328:CDS | 35.0% | |
AAGCATACAGTGCATACTAT+AGG | - | chr2.3:68601780-68601799 | None:intergenic | 35.0% | |
AGTTGTTACGATATGAGGAT+TGG | - | chr2.3:68601675-68601694 | None:intergenic | 35.0% | |
ATATGCTCAAACAAACTGGA+AGG | + | chr2.3:68600898-68600917 | MS.gene004328:CDS | 35.0% | |
ATTCACGTCAAAGAGATTCA+CGG | - | chr2.3:68601476-68601495 | None:intergenic | 35.0% | |
ATTCCATAGCCATCAATTAC+AGG | + | chr2.3:68603070-68603089 | MS.gene004328:CDS | 35.0% | |
CAACCGACACATAAATACTT+TGG | - | chr2.3:68601367-68601386 | None:intergenic | 35.0% | |
CTTAGCTACCAAATACAACA+AGG | + | chr2.3:68603509-68603528 | MS.gene004328:CDS | 35.0% | |
CTTCTCAAGATGCTTAAACA+CGG | + | chr2.3:68600542-68600561 | MS.gene004328:CDS | 35.0% | |
CTTGATATGCTCAAACAAAC+TGG | + | chr2.3:68600894-68600913 | MS.gene004328:CDS | 35.0% | |
GAGCTTATGGAAATAGTTCA+TGG | + | chr2.3:68601013-68601032 | MS.gene004328:intron | 35.0% | |
GATGCAGAAACAAGACATAA+AGG | - | chr2.3:68601330-68601349 | None:intergenic | 35.0% | |
TATCATTCACATCCTGGATT+TGG | + | chr2.3:68601254-68601273 | MS.gene004328:CDS | 35.0% | |
TCTAACATCGTTCAAACTCT+TGG | + | chr2.3:68603639-68603658 | MS.gene004328:CDS | 35.0% | |
TCTGAATAAACCATCCATTC+AGG | + | chr2.3:68602906-68602925 | MS.gene004328:CDS | 35.0% | |
TGGCTATGGAATAATAATGC+CGG | - | chr2.3:68603062-68603081 | None:intergenic | 35.0% | |
TTATCTATAATAGGCAGAGC+TGG | + | chr2.3:68600729-68600748 | MS.gene004328:intron | 35.0% | |
TTTATTCAGATGTCCCAGAT+TGG | - | chr2.3:68602896-68602915 | None:intergenic | 35.0% | |
! | GATATGAGGATTGGTATAGT+GGG | - | chr2.3:68601666-68601685 | None:intergenic | 35.0% |
! | GATTAAGAGCTCCTTATTTG+AGG | - | chr2.3:68602460-68602479 | None:intergenic | 35.0% |
! | TCAAAGTGTTAAAGGAAAGG+TGG | + | chr2.3:68602801-68602820 | MS.gene004328:CDS | 35.0% |
!! | CACAAAAAGAAATGGACTGA+TGG | + | chr2.3:68603129-68603148 | MS.gene004328:CDS | 35.0% |
!! | TTGAACAGCCTTGTTGTATT+TGG | - | chr2.3:68603520-68603539 | None:intergenic | 35.0% |
!! | TTTGCTATTGCAAGTTTCTC+GGG | - | chr2.3:68603561-68603580 | None:intergenic | 35.0% |
!!! | CTTGGTATTTTGGCTTTTGT+TGG | + | chr2.3:68601911-68601930 | MS.gene004328:intron | 35.0% |
AAGCTTTCAGGGAGAACTTA+TGG | + | chr2.3:68603417-68603436 | MS.gene004328:intron | 40.0% | |
AATAGCCATTAGTTGGCACT+TGG | - | chr2.3:68602597-68602616 | None:intergenic | 40.0% | |
AATCCACAGACAATGATGCT+TGG | + | chr2.3:68602847-68602866 | MS.gene004328:CDS | 40.0% | |
AGAATACTTTGCACGCTGTT+TGG | - | chr2.3:68602207-68602226 | None:intergenic | 40.0% | |
AGATTACAACTGCAATGGAC+CGG | - | chr2.3:68602307-68602326 | None:intergenic | 40.0% | |
ATACAACAAGGCTGTTCAAG+AGG | + | chr2.3:68603521-68603540 | MS.gene004328:CDS | 40.0% | |
ATACACAGCAGGTTCTACTA+TGG | + | chr2.3:68601303-68601322 | MS.gene004328:intron | 40.0% | |
ATCAAACCCATAACCTCCAT+GGG | - | chr2.3:68600759-68600778 | None:intergenic | 40.0% | |
ATGGATCAATGCCTAAAGAG+AGG | - | chr2.3:68603031-68603050 | None:intergenic | 40.0% | |
CATAATAGCCACTGTGACTT+AGG | + | chr2.3:68601724-68601743 | MS.gene004328:intron | 40.0% | |
CATTGAAATCTGGATCACCA+AGG | + | chr2.3:68602149-68602168 | MS.gene004328:intron | 40.0% | |
CTTAGTTTCCCCAAGAAGAT+CGG | + | chr2.3:68601797-68601816 | MS.gene004328:intron | 40.0% | |
CTTCATTGTGTTGCCTTTGA+GGG | + | chr2.3:68602013-68602032 | MS.gene004328:intron | 40.0% | |
GGATAGCCCATGATTTGAAT+AGG | - | chr2.3:68600586-68600605 | None:intergenic | 40.0% | |
GTCAGAGTTGTTACGATATG+AGG | - | chr2.3:68601680-68601699 | None:intergenic | 40.0% | |
TAAGATGCAGCGTGTAATGT+GGG | + | chr2.3:68603214-68603233 | MS.gene004328:intron | 40.0% | |
TGTTGACATCAATACACAGC+AGG | + | chr2.3:68601292-68601311 | MS.gene004328:CDS | 40.0% | |
TTAAGATGCAGCGTGTAATG+TGG | + | chr2.3:68603213-68603232 | MS.gene004328:intron | 40.0% | |
TTACAGGAAGAATGAACTCG+AGG | + | chr2.3:68603086-68603105 | MS.gene004328:CDS | 40.0% | |
TTCATTGTGTTGCCTTTGAG+GGG | + | chr2.3:68602014-68602033 | MS.gene004328:intron | 40.0% | |
TTGATTGGACGGTACATATG+TGG | - | chr2.3:68601868-68601887 | None:intergenic | 40.0% | |
TTTGATGCTGGGAGAATTTG+TGG | + | chr2.3:68600773-68600792 | MS.gene004328:CDS | 40.0% | |
! | AATTTGAGACATGCTCTTCG+AGG | - | chr2.3:68603611-68603630 | None:intergenic | 40.0% |
! | AGACTTGTTCGGATGAATCT+AGG | - | chr2.3:68600505-68600524 | None:intergenic | 40.0% |
! | CGATATGAGGATTGGTATAG+TGG | - | chr2.3:68601667-68601686 | None:intergenic | 40.0% |
! | CTGTGAATTTAAGGTCCGTT+TGG | + | chr2.3:68600949-68600968 | MS.gene004328:intron | 40.0% |
! | CTTCCTGTAATTGATGGCTA+TGG | - | chr2.3:68603076-68603095 | None:intergenic | 40.0% |
! | GACTTGTTCGGATGAATCTA+GGG | - | chr2.3:68600504-68600523 | None:intergenic | 40.0% |
!! | CCTTACAAAACTGGCTTGTA+AGG | - | chr2.3:68602082-68602101 | None:intergenic | 40.0% |
!! | CCTTACAAGCCAGTTTTGTA+AGG | + | chr2.3:68602079-68602098 | MS.gene004328:intron | 40.0% |
!! | CTCTTTAGGCATTGATCCAT+GGG | + | chr2.3:68603031-68603050 | MS.gene004328:intron | 40.0% |
!! | TATAGTGGGTTGGCAAAGTT+GGG | - | chr2.3:68601652-68601671 | None:intergenic | 40.0% |
!! | TCTCTTTAGGCATTGATCCA+TGG | + | chr2.3:68603030-68603049 | MS.gene004328:intron | 40.0% |
!!! | TTTTGAGTTACGCACCTGAA+TGG | - | chr2.3:68602923-68602942 | None:intergenic | 40.0% |
AAATCTGGATCACCAAGGTG+TGG | + | chr2.3:68602154-68602173 | MS.gene004328:intron | 45.0% | |
AAGGCAGACAACTTCCAATC+TGG | + | chr2.3:68602879-68602898 | MS.gene004328:CDS | 45.0% | |
ACCGTCCAATCAAGATCAGA+CGG | + | chr2.3:68601875-68601894 | MS.gene004328:intron | 45.0% | |
ACCGTCTGATCTTGATTGGA+CGG | - | chr2.3:68601879-68601898 | None:intergenic | 45.0% | |
ACTTTGCACGCTGTTTGGAT+TGG | - | chr2.3:68602202-68602221 | None:intergenic | 45.0% | |
AGATTGGAAGTTGTCTGCCT+TGG | - | chr2.3:68602880-68602899 | None:intergenic | 45.0% | |
AGGCAGACAACTTCCAATCT+GGG | + | chr2.3:68602880-68602899 | MS.gene004328:CDS | 45.0% | |
AGGCTTCAAAGAATGTTCGC+AGG | + | chr2.3:68600437-68600456 | MS.gene004328:CDS | 45.0% | |
ATCACCCATGCAAGTTATGC+CGG | + | chr2.3:68602285-68602304 | MS.gene004328:intron | 45.0% | |
ATTGTGTTGCAGACCAGAGA+TGG | + | chr2.3:68601220-68601239 | MS.gene004328:intron | 45.0% | |
CAAACCAAAGCCCGCAATTT+AGG | - | chr2.3:68601971-68601990 | None:intergenic | 45.0% | |
CATCAAACCCATAACCTCCA+TGG | - | chr2.3:68600760-68600779 | None:intergenic | 45.0% | |
CCTCAAAGGCAACACAATGA+AGG | - | chr2.3:68602015-68602034 | None:intergenic | 45.0% | |
CCTTCATTGTGTTGCCTTTG+AGG | + | chr2.3:68602012-68602031 | MS.gene004328:intron | 45.0% | |
CTGCTCTGATCCCTCAAATA+AGG | + | chr2.3:68602446-68602465 | MS.gene004328:intron | 45.0% | |
CTTATTTGAGGGATCAGAGC+AGG | - | chr2.3:68602448-68602467 | None:intergenic | 45.0% | |
CTTTGCACGCTGTTTGGATT+GGG | - | chr2.3:68602201-68602220 | None:intergenic | 45.0% | |
GAGGTTATGGGTTTGATGCT+GGG | + | chr2.3:68600762-68600781 | MS.gene004328:CDS | 45.0% | |
GCAAACAACCTAAGTCACAG+TGG | - | chr2.3:68601735-68601754 | None:intergenic | 45.0% | |
GTGTCCTATCTATCCGATGT+GGG | - | chr2.3:68602051-68602070 | None:intergenic | 45.0% | |
TGATGCTTGGACAAGAACCA+AGG | + | chr2.3:68602860-68602879 | MS.gene004328:CDS | 45.0% | |
TGGAAATTCCGCCTTAACTG+CGG | + | chr2.3:68601931-68601950 | MS.gene004328:intron | 45.0% | |
TGTCCAAGCATCATTGTCTG+TGG | - | chr2.3:68602853-68602872 | None:intergenic | 45.0% | |
TGTCCTATCTATCCGATGTG+GGG | - | chr2.3:68602050-68602069 | None:intergenic | 45.0% | |
TGTGTCCTATCTATCCGATG+TGG | - | chr2.3:68602052-68602071 | None:intergenic | 45.0% | |
TTGGACGGTACATATGTGGT+TGG | - | chr2.3:68601864-68601883 | None:intergenic | 45.0% | |
! | AAGCATCTTGAGAAGTGCGA+GGG | - | chr2.3:68600537-68600556 | None:intergenic | 45.0% |
! | AGCGTGCAAAGTATTCTCTG+TGG | + | chr2.3:68602210-68602229 | MS.gene004328:intron | 45.0% |
! | AGGCAACACAATGAAGGTGT+TGG | - | chr2.3:68602009-68602028 | None:intergenic | 45.0% |
! | CATTGATCCATGGGTTGAAC+CGG | + | chr2.3:68603040-68603059 | MS.gene004328:CDS | 45.0% |
! | GGAGGAGATGTAGACTTGTT+CGG | - | chr2.3:68600516-68600535 | None:intergenic | 45.0% |
! | GTTCGGATGAATCTAGGGTT+GGG | - | chr2.3:68600499-68600518 | None:intergenic | 45.0% |
! | TAAGCATCTTGAGAAGTGCG+AGG | - | chr2.3:68600538-68600557 | None:intergenic | 45.0% |
! | TCATTGTGTTGCCTTTGAGG+GGG | + | chr2.3:68602015-68602034 | MS.gene004328:intron | 45.0% |
! | TCGTGTACTGCAGAGTTTTG+AGG | + | chr2.3:68602738-68602757 | MS.gene004328:intron | 45.0% |
! | TGTTCGGATGAATCTAGGGT+TGG | - | chr2.3:68600500-68600519 | None:intergenic | 45.0% |
! | TTCGGATGAATCTAGGGTTG+GGG | - | chr2.3:68600498-68600517 | None:intergenic | 45.0% |
!! | AATAATGCCGGTTCAACCCA+TGG | - | chr2.3:68603050-68603069 | None:intergenic | 45.0% |
!! | CAAAACTGGCTTGTAAGGTG+AGG | - | chr2.3:68602077-68602096 | None:intergenic | 45.0% |
!! | CAACACAATGAAGGTGTTGG+AGG | - | chr2.3:68602006-68602025 | None:intergenic | 45.0% |
!! | GTATAGTGGGTTGGCAAAGT+TGG | - | chr2.3:68601653-68601672 | None:intergenic | 45.0% |
!! | TAGTTATTGGTTGGTGCTGC+TGG | + | chr2.3:68602697-68602716 | MS.gene004328:intron | 45.0% |
!! | TGAGGATTGGTATAGTGGGT+TGG | - | chr2.3:68601662-68601681 | None:intergenic | 45.0% |
AATCTGGAGGTGGATGACCT+AGG | - | chr2.3:68600475-68600494 | None:intergenic | 50.0% | |
AGCCCAGATCCGATCTTCTT+GGG | - | chr2.3:68601809-68601828 | None:intergenic | 50.0% | |
AGTGTGACTGAACCACACCT+TGG | - | chr2.3:68602169-68602188 | None:intergenic | 50.0% | |
ATCTGGAGGTGGATGACCTA+GGG | - | chr2.3:68600474-68600493 | None:intergenic | 50.0% | |
CAAAGAATGTTCGCAGGTGC+AGG | + | chr2.3:68600443-68600462 | MS.gene004328:CDS | 50.0% | |
CACATCCTGGATTTGGCTGT+TGG | + | chr2.3:68601261-68601280 | MS.gene004328:CDS | 50.0% | |
CACTGCCAAGTGCCAACTAA+TGG | + | chr2.3:68602589-68602608 | MS.gene004328:intron | 50.0% | |
CTAACACCAGTTCCACTCTG+TGG | - | chr2.3:68600837-68600856 | None:intergenic | 50.0% | |
CTGGACCGTCTGATCTTGAT+TGG | - | chr2.3:68601883-68601902 | None:intergenic | 50.0% | |
GACAACCAACAGCCAAATCC+AGG | - | chr2.3:68601269-68601288 | None:intergenic | 50.0% | |
GACGGTCCAGAGTTCAAACT+TGG | + | chr2.3:68601893-68601912 | MS.gene004328:intron | 50.0% | |
GAGTTACGCACCTGAATGGA+TGG | - | chr2.3:68602919-68602938 | None:intergenic | 50.0% | |
GGACTGATGGCTTGACACTT+AGG | + | chr2.3:68603142-68603161 | MS.gene004328:CDS | 50.0% | |
GGAGGTTATGGGTTTGATGC+TGG | + | chr2.3:68600761-68600780 | MS.gene004328:CDS | 50.0% | |
GGCTGGTATCATTCACATCC+TGG | + | chr2.3:68601248-68601267 | MS.gene004328:CDS | 50.0% | |
GGTGTACCCATGGAGGTTAT+GGG | + | chr2.3:68600750-68600769 | MS.gene004328:CDS | 50.0% | |
GTGTTTGCAATGCCACAGAG+TGG | + | chr2.3:68600822-68600841 | MS.gene004328:CDS | 50.0% | |
TACCAGCCAACAACCATCTC+TGG | - | chr2.3:68601236-68601255 | None:intergenic | 50.0% | |
TAGCCCCACATCGGATAGAT+AGG | + | chr2.3:68602044-68602063 | MS.gene004328:intron | 50.0% | |
TCCCCAAGAAGATCGGATCT+GGG | + | chr2.3:68601804-68601823 | MS.gene004328:intron | 50.0% | |
TCCCCTAGTCGCCTAAATTG+CGG | + | chr2.3:68601957-68601976 | MS.gene004328:intron | 50.0% | |
TGCAGACCAGAGATGGTTGT+TGG | + | chr2.3:68601227-68601246 | MS.gene004328:intron | 50.0% | |
TGGATCCACAACTACAGCCA+CGG | - | chr2.3:68602779-68602798 | None:intergenic | 50.0% | |
TGGTGTACCCATGGAGGTTA+TGG | + | chr2.3:68600749-68600768 | MS.gene004328:CDS | 50.0% | |
TTCCCCAAGAAGATCGGATC+TGG | + | chr2.3:68601803-68601822 | MS.gene004328:intron | 50.0% | |
! | ATGCTCTTCGAGGTGCTTCT+TGG | - | chr2.3:68603601-68603620 | None:intergenic | 50.0% |
! | ATGGACCGGCATAACTTGCA+TGG | - | chr2.3:68602293-68602312 | None:intergenic | 50.0% |
! | GAATCTAGGGTTGGGGAATC+TGG | - | chr2.3:68600491-68600510 | None:intergenic | 50.0% |
! | GGATTTGGCTGTTGGTTGTC+TGG | + | chr2.3:68601269-68601288 | MS.gene004328:CDS | 50.0% |
! | TGGACCGGCATAACTTGCAT+GGG | - | chr2.3:68602292-68602311 | None:intergenic | 50.0% |
AGAATGTTCGCAGGTGCAGG+TGG | + | chr2.3:68600446-68600465 | MS.gene004328:CDS | 55.0% | |
AGCCCGCAATTTAGGCGACT+AGG | - | chr2.3:68601963-68601982 | None:intergenic | 55.0% | |
CAGCCCAGATCCGATCTTCT+TGG | - | chr2.3:68601810-68601829 | None:intergenic | 55.0% | |
CCCCTAGTCGCCTAAATTGC+GGG | + | chr2.3:68601958-68601977 | MS.gene004328:intron | 55.0% | |
CCCGCAATTTAGGCGACTAG+GGG | - | chr2.3:68601961-68601980 | None:intergenic | 55.0% | |
CTAGGGGAAGACCGCAGTTA+AGG | - | chr2.3:68601945-68601964 | None:intergenic | 55.0% | |
GACCAGAGATGGTTGTTGGC+TGG | + | chr2.3:68601231-68601250 | MS.gene004328:intron | 55.0% | |
GCAATGCCACAGAGTGGAAC+TGG | + | chr2.3:68600828-68600847 | MS.gene004328:CDS | 55.0% | |
GCCCAGATCCGATCTTCTTG+GGG | - | chr2.3:68601808-68601827 | None:intergenic | 55.0% | |
GCCCGCAATTTAGGCGACTA+GGG | - | chr2.3:68601962-68601981 | None:intergenic | 55.0% | |
GGCTAAATCCACCCCCTCAA+AGG | - | chr2.3:68602029-68602048 | None:intergenic | 55.0% | |
GTCGCCTAAATTGCGGGCTT+TGG | + | chr2.3:68601964-68601983 | MS.gene004328:intron | 55.0% | |
TGCAGTCACAACCTTGTGGC+TGG | + | chr2.3:68601832-68601851 | MS.gene004328:intron | 55.0% | |
TGCGTGCAGTCACAACCTTG+TGG | + | chr2.3:68601828-68601847 | MS.gene004328:intron | 55.0% | |
! | CATCTTGAGAAGTGCGAGGG+AGG | - | chr2.3:68600534-68600553 | None:intergenic | 55.0% |
! | GGGTGGATTTAGCCCCACAT+CGG | + | chr2.3:68602035-68602054 | MS.gene004328:intron | 55.0% |
! | GGTGTTGGAGGCTGCAATGA+AGG | - | chr2.3:68601994-68602013 | None:intergenic | 55.0% |
! | TCTAGGGTTGGGGAATCTGG+AGG | - | chr2.3:68600488-68600507 | None:intergenic | 55.0% |
! | TTGTGTTGCCTTTGAGGGGG+TGG | + | chr2.3:68602018-68602037 | MS.gene004328:intron | 55.0% |
!! | GGCTTTGAATCAGAGAGCCG+TGG | + | chr2.3:68602759-68602778 | MS.gene004328:CDS | 55.0% |
AGGCAGAGCTGGTGTACCCA+TGG | + | chr2.3:68600740-68600759 | MS.gene004328:intron | 60.0% | |
AGGGTTGGGGAATCTGGAGG+TGG | - | chr2.3:68600485-68600504 | None:intergenic | 60.0% | |
CAGAGCTGGTGTACCCATGG+AGG | + | chr2.3:68600743-68600762 | MS.gene004328:CDS | 60.0% | |
GAGAGCCGTGGCTGTAGTTG+TGG | + | chr2.3:68602771-68602790 | MS.gene004328:CDS | 60.0% | |
GGGGAAGACCGCAGTTAAGG+CGG | - | chr2.3:68601942-68601961 | None:intergenic | 60.0% | |
GTTGGCTGCATCCAGCCACA+AGG | - | chr2.3:68601846-68601865 | None:intergenic | 60.0% | |
GCAGGTGCAGGTGGAGCCCT+AGG | + | chr2.3:68600455-68600474 | MS.gene004328:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 68600431 | 68603689 | 68600431 | ID=MS.gene004328 |
chr2.3 | mRNA | 68600431 | 68603689 | 68600431 | ID=MS.gene004328.t1;Parent=MS.gene004328 |
chr2.3 | exon | 68600431 | 68600563 | 68600431 | ID=MS.gene004328.t1.exon1;Parent=MS.gene004328.t1 |
chr2.3 | CDS | 68600431 | 68600563 | 68600431 | ID=cds.MS.gene004328.t1;Parent=MS.gene004328.t1 |
chr2.3 | exon | 68600742 | 68600919 | 68600742 | ID=MS.gene004328.t1.exon2;Parent=MS.gene004328.t1 |
chr2.3 | CDS | 68600742 | 68600919 | 68600742 | ID=cds.MS.gene004328.t1;Parent=MS.gene004328.t1 |
chr2.3 | exon | 68601232 | 68601313 | 68601232 | ID=MS.gene004328.t1.exon3;Parent=MS.gene004328.t1 |
chr2.3 | CDS | 68601232 | 68601313 | 68601232 | ID=cds.MS.gene004328.t1;Parent=MS.gene004328.t1 |
chr2.3 | exon | 68602751 | 68602927 | 68602751 | ID=MS.gene004328.t1.exon4;Parent=MS.gene004328.t1 |
chr2.3 | CDS | 68602751 | 68602927 | 68602751 | ID=cds.MS.gene004328.t1;Parent=MS.gene004328.t1 |
chr2.3 | exon | 68603039 | 68603206 | 68603039 | ID=MS.gene004328.t1.exon5;Parent=MS.gene004328.t1 |
chr2.3 | CDS | 68603039 | 68603206 | 68603039 | ID=cds.MS.gene004328.t1;Parent=MS.gene004328.t1 |
chr2.3 | exon | 68603498 | 68603689 | 68603498 | ID=MS.gene004328.t1.exon6;Parent=MS.gene004328.t1 |
chr2.3 | CDS | 68603498 | 68603689 | 68603498 | ID=cds.MS.gene004328.t1;Parent=MS.gene004328.t1 |
Gene Sequence |
Protein sequence |