Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002648.t1 | XP_003593794.1 | 100 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 1.70E-172 | 615.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002648.t1 | Q9LT08 | 96.1 | 309 | 11 | 1 | 1 | 309 | 1 | 308 | 9.2e-167 | 587.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002648.t1 | G7ILL5 | 100.0 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 1.2e-172 | 615.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002648.t1 | MTR_2g017680 | 100.000 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 0.0 | 643 |
MS.gene002648.t1 | MTR_1g019930 | 99.032 | 310 | 2 | 1 | 1 | 309 | 4 | 313 | 0.0 | 636 |
MS.gene002648.t1 | MTR_3g108790 | 42.029 | 207 | 107 | 9 | 29 | 230 | 58 | 256 | 2.58e-35 | 131 |
MS.gene002648.t1 | MTR_8g006640 | 62.857 | 35 | 13 | 0 | 98 | 132 | 29 | 63 | 2.26e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002648.t1 | AT5G23540 | 96.117 | 309 | 11 | 1 | 1 | 309 | 1 | 308 | 0.0 | 615 |
MS.gene002648.t1 | AT5G23540 | 97.683 | 259 | 6 | 0 | 51 | 309 | 1 | 259 | 0.0 | 528 |
MS.gene002648.t1 | AT1G71230 | 40.566 | 212 | 103 | 8 | 29 | 230 | 57 | 255 | 4.21e-34 | 128 |
MS.gene002648.t1 | AT1G22920 | 39.806 | 206 | 113 | 8 | 29 | 230 | 57 | 255 | 1.54e-32 | 124 |
MS.gene002648.t1 | AT1G22920 | 39.806 | 206 | 113 | 8 | 29 | 230 | 57 | 255 | 2.03e-32 | 123 |
MS.gene002648.t1 | AT5G27607 | 76.596 | 47 | 11 | 0 | 96 | 142 | 70 | 116 | 2.18e-19 | 82.8 |
Find 79 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTGTTCCCATGGAGGTTA+TGG | 0.185250 | 2.1:+68792936 | MS.gene002648:CDS |
AACAGTCTGTTCATTAGTTT+TGG | 0.224880 | 2.1:-68795328 | None:intergenic |
TTGAACAGCCTTGTTGTATT+TGG | 0.268596 | 2.1:-68795670 | None:intergenic |
GGTGTTCCCATGGAGGTTAT+GGG | 0.289500 | 2.1:+68792937 | MS.gene002648:CDS |
GATCCAATTCAAAGTGTTAA+AGG | 0.297544 | 2.1:+68794941 | MS.gene002648:CDS |
TTCATTCTTCCTGTAATTGA+TGG | 0.301331 | 2.1:-68795226 | None:intergenic |
GGATTTGGCTGTTGGTTGTC+TGG | 0.310169 | 2.1:+68793451 | MS.gene002648:CDS |
ATTCCATAGCCATCAATTAC+AGG | 0.318521 | 2.1:+68795217 | MS.gene002648:CDS |
TTTCCTTTAACACTTTGAAT+TGG | 0.338465 | 2.1:-68794944 | None:intergenic |
TATCATTCACATCCTGGATT+TGG | 0.349236 | 2.1:+68793436 | MS.gene002648:CDS |
AGACTTGTTCGGATGAATCT+AGG | 0.351262 | 2.1:-68792695 | None:intergenic |
ATGCTCTTCGAGGTGCTTCT+TGG | 0.355935 | 2.1:-68795751 | None:intergenic |
GAATCTAGGGTTGGAGAATC+TGG | 0.362906 | 2.1:-68792681 | None:intergenic |
CTTGATATGCTCAAACAAAC+TGG | 0.363131 | 2.1:+68793081 | MS.gene002648:CDS |
CTCTTTAGGCATTGATCCAT+GGG | 0.379104 | 2.1:+68795178 | MS.gene002648:intron |
CACATCCTGGATTTGGCTGT+TGG | 0.391614 | 2.1:+68793443 | MS.gene002648:CDS |
TCTAACATCGTTCAAACTCT+TGG | 0.396438 | 2.1:+68795792 | MS.gene002648:CDS |
TCTGAATAAACCATCCATTC+AGG | 0.402001 | 2.1:+68795054 | MS.gene002648:CDS |
AAGGCAGACAACTTCCAATC+TGG | 0.404764 | 2.1:+68795027 | MS.gene002648:CDS |
TCTCTTTAGGCATTGATCCA+TGG | 0.408154 | 2.1:+68795177 | MS.gene002648:intron |
TTTGATGCTTGGAGAATTTG+TGG | 0.413116 | 2.1:+68792960 | MS.gene002648:CDS |
ATTTGCTATTGCAAGTTTCT+CGG | 0.414356 | 2.1:-68795712 | None:intergenic |
AGATTGGAAGTTGTCTGCCT+TGG | 0.433636 | 2.1:-68795025 | None:intergenic |
CATTGATCCATGGGTTGAAC+CGG | 0.440732 | 2.1:+68795187 | MS.gene002648:CDS |
CAAAGAATGTTCGCAGGTGC+AGG | 0.448769 | 2.1:+68792636 | MS.gene002648:CDS |
GGCTGGTATCATTCACATCC+TGG | 0.450530 | 2.1:+68793430 | MS.gene002648:CDS |
GAGGTTATGGGTTTGATGCT+TGG | 0.451218 | 2.1:+68792949 | MS.gene002648:CDS |
TTTGCTATTGCAAGTTTCTC+GGG | 0.452950 | 2.1:-68795711 | None:intergenic |
AATTTGAGACATGCTCTTCG+AGG | 0.480365 | 2.1:-68795761 | None:intergenic |
TGCAGACCAGAGATGGTTGT+TGG | 0.483028 | 2.1:+68793409 | MS.gene002648:intron |
GCAATGCCACAGAGTGGAAC+TGG | 0.486016 | 2.1:+68793015 | MS.gene002648:CDS |
CTTCCTGTAATTGATGGCTA+TGG | 0.489960 | 2.1:-68795220 | None:intergenic |
AACTAATGAACAGACTGTTC+AGG | 0.493790 | 2.1:+68795332 | MS.gene002648:CDS |
TACCAGCCAACAACCATCTC+TGG | 0.496380 | 2.1:-68793415 | None:intergenic |
GGATGAGATGTAGACTTGTT+CGG | 0.496633 | 2.1:-68792706 | None:intergenic |
TTTATTCAGATGTCCCAGAT+TGG | 0.501681 | 2.1:-68795041 | None:intergenic |
GCAGGTGCAGGTGGAGCCCT+AGG | 0.507158 | 2.1:+68792648 | MS.gene002648:CDS |
AAACTTGCAATAGCAAATGT+TGG | 0.510302 | 2.1:+68795717 | MS.gene002648:CDS |
TGTCCAAGCATCATTGTCTG+TGG | 0.515753 | 2.1:-68794998 | None:intergenic |
GACTTGTTCGGATGAATCTA+GGG | 0.516752 | 2.1:-68792694 | None:intergenic |
GACAACCAACAGCCAAATCC+AGG | 0.516917 | 2.1:-68793448 | None:intergenic |
GTTTGAGTTACGCACCTGAA+TGG | 0.524957 | 2.1:-68795068 | None:intergenic |
GGACTGATGGCTTGACACTT+AGG | 0.529421 | 2.1:+68795289 | MS.gene002648:CDS |
CATCAAACCCATAACCTCCA+TGG | 0.530750 | 2.1:-68792944 | None:intergenic |
GAGAGCCGTGGCTGTAGTTG+TGG | 0.532971 | 2.1:+68794919 | MS.gene002648:CDS |
AATAATGCCGGTTCAACCCA+TGG | 0.533545 | 2.1:-68795194 | None:intergenic |
TTAACAATAATAGGTAGGGC+TGG | 0.544991 | 2.1:+68792916 | MS.gene002648:intron |
AGGTAGGGCTGGTGTTCCCA+TGG | 0.547536 | 2.1:+68792927 | MS.gene002648:intron |
AGGCAGACAACTTCCAATCT+GGG | 0.548081 | 2.1:+68795028 | MS.gene002648:CDS |
GAGTTACGCACCTGAATGGA+TGG | 0.549238 | 2.1:-68795064 | None:intergenic |
TGTTCGGATGAATCTAGGGT+TGG | 0.556841 | 2.1:-68792690 | None:intergenic |
GACCAGAGATGGTTGTTGGC+TGG | 0.560653 | 2.1:+68793413 | MS.gene002648:intron |
AATCCACAGACAATGATGCT+TGG | 0.566917 | 2.1:+68794995 | MS.gene002648:CDS |
AGAATGTTCGCAGGTGCAGG+TGG | 0.582287 | 2.1:+68792639 | MS.gene002648:CDS |
AGGGTTGGAGAATCTGGTGG+TGG | 0.583084 | 2.1:-68792675 | None:intergenic |
AATCTGGTGGTGGATGACCT+AGG | 0.583160 | 2.1:-68792665 | None:intergenic |
ATCAAACCCATAACCTCCAT+GGG | 0.586388 | 2.1:-68792943 | None:intergenic |
AATTCAAAGTGTTAAAGGAA+AGG | 0.587669 | 2.1:+68794946 | MS.gene002648:CDS |
ATCTGGTGGTGGATGACCTA+GGG | 0.587858 | 2.1:-68792664 | None:intergenic |
ATACAACAAGGCTGTTCAAG+AGG | 0.587968 | 2.1:+68795674 | MS.gene002648:CDS |
ATTGTGTTGCAGACCAGAGA+TGG | 0.597906 | 2.1:+68793402 | MS.gene002648:intron |
TTCATCGATTCATCATGGAA+AGG | 0.606178 | 2.1:+68792610 | None:intergenic |
ATATGCTCAAACAAACTGGA+AGG | 0.606861 | 2.1:+68793085 | MS.gene002648:CDS |
TCAAAGTGTTAAAGGAAAGG+TGG | 0.613319 | 2.1:+68794949 | MS.gene002648:CDS |
TGGCTATGGAATAATAATGC+CGG | 0.615459 | 2.1:-68795206 | None:intergenic |
AGGCTTCAAAGAATGTTCGC+AGG | 0.619756 | 2.1:+68792630 | MS.gene002648:CDS |
TAGGGCTGGTGTTCCCATGG+AGG | 0.627642 | 2.1:+68792930 | MS.gene002648:CDS |
AAGCATCTTGAGAAGAGCGA+GGG | 0.629521 | 2.1:-68792727 | None:intergenic |
GGCTTTGAATCAGAGAGCCG+TGG | 0.631150 | 2.1:+68794907 | MS.gene002648:CDS |
TGGATCCACAACTACAGCCA+CGG | 0.635765 | 2.1:-68794924 | None:intergenic |
CTTAGCTACCAAATACAACA+AGG | 0.639370 | 2.1:+68795662 | MS.gene002648:CDS |
TGTTGACATCAATACACAGC+AGG | 0.639510 | 2.1:+68793474 | MS.gene002648:CDS |
TAAGCATCTTGAGAAGAGCG+AGG | 0.654674 | 2.1:-68792728 | None:intergenic |
TTACAGGAAGAATGAACTCG+AGG | 0.664198 | 2.1:+68795233 | MS.gene002648:CDS |
CTTCTCAAGATGCTTAAACA+CGG | 0.678967 | 2.1:+68792735 | MS.gene002648:CDS |
TCTAGGGTTGGAGAATCTGG+TGG | 0.686607 | 2.1:-68792678 | None:intergenic |
CTAACACCAGTTCCACTCTG+TGG | 0.696288 | 2.1:-68793021 | None:intergenic |
TGATGCTTGGACAAGAACCA+AGG | 0.701272 | 2.1:+68795008 | MS.gene002648:CDS |
GTGTTTGCAATGCCACAGAG+TGG | 0.719761 | 2.1:+68793009 | MS.gene002648:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGCTTTTAAAAAAATAAAAT+CGG | + | chr2.1:68794309-68794328 | MS.gene002648:intron | 10.0% |
!! | AAATGAGTTTGATTAATTTA+AGG | + | chr2.1:68794440-68794459 | MS.gene002648:intron | 15.0% |
!!! | GTGTTTTTTTTAACAATAAT+AGG | + | chr2.1:68792907-68792926 | MS.gene002648:intron | 15.0% |
!!! | TAAGATTTTCATTCATTAAA+TGG | - | chr2.1:68794560-68794579 | None:intergenic | 15.0% |
!!! | TTTTTTAACAATAATAGGTA+GGG | + | chr2.1:68792912-68792931 | MS.gene002648:intron | 15.0% |
!!! | TTTTTTTAACAATAATAGGT+AGG | + | chr2.1:68792911-68792930 | MS.gene002648:intron | 15.0% |
!!! | TTTTTTTGGATGTATTATTT+TGG | + | chr2.1:68795119-68795138 | MS.gene002648:intron | 15.0% |
!! | AATTTCAATTATCAAGACAA+TGG | - | chr2.1:68794703-68794722 | None:intergenic | 20.0% |
!! | AGTTATTAATTTACTTTCAG+TGG | + | chr2.1:68793625-68793644 | MS.gene002648:intron | 20.0% |
!! | GGTATTTCAATTTCAAAATT+AGG | + | chr2.1:68792873-68792892 | MS.gene002648:intron | 20.0% |
!! | GTTTATTTGATTAATCAGAT+AGG | - | chr2.1:68795399-68795418 | None:intergenic | 20.0% |
!! | TTAATCTTCACAAAAAGAAA+TGG | + | chr2.1:68795268-68795287 | MS.gene002648:CDS | 20.0% |
!! | TTTAAAAGCTGTTGAAATTT+GGG | - | chr2.1:68794299-68794318 | None:intergenic | 20.0% |
!! | TTTATAAAATAGCCATTAGT+TGG | - | chr2.1:68794752-68794771 | None:intergenic | 20.0% |
!!! | AAGTCAATATTTTTTAAGCA+TGG | + | chr2.1:68794602-68794621 | MS.gene002648:intron | 20.0% |
!!! | ACTTGTTTCTAATTAGTTAT+TGG | + | chr2.1:68794832-68794851 | MS.gene002648:intron | 20.0% |
!!! | AGTTGTAATCTTGTTTTTAA+AGG | + | chr2.1:68794499-68794518 | MS.gene002648:intron | 20.0% |
!!! | ATCAACGTAATTCAAATTTT+TGG | - | chr2.1:68794775-68794794 | None:intergenic | 20.0% |
!!! | CCGATTTTTAGATTTAAAAA+CGG | + | chr2.1:68795440-68795459 | MS.gene002648:intron | 20.0% |
!!! | CCGTTTTTAAATCTAAAAAT+CGG | - | chr2.1:68795443-68795462 | None:intergenic | 20.0% |
!!! | CGATATTCATACAATTTTTT+TGG | + | chr2.1:68795105-68795124 | MS.gene002648:intron | 20.0% |
!!! | GTTGTAATCTTGTTTTTAAA+GGG | + | chr2.1:68794500-68794519 | MS.gene002648:intron | 20.0% |
!!! | TATTATAATTTTTGACGACA+TGG | + | chr2.1:68793596-68793615 | MS.gene002648:intron | 20.0% |
!!! | TCTCAATTAATTTGAAATGT+AGG | + | chr2.1:68795629-68795648 | MS.gene002648:intron | 20.0% |
!!! | TTTTAAAAGCTGTTGAAATT+TGG | - | chr2.1:68794300-68794319 | None:intergenic | 20.0% |
!!! | TTTTAACTTCATCAAATCAT+GGG | + | chr2.1:68792852-68792871 | MS.gene002648:intron | 20.0% |
!!! | TTTTTAACTTCATCAAATCA+TGG | + | chr2.1:68792851-68792870 | MS.gene002648:intron | 20.0% |
! | AACATGAATAACACAATGTT+TGG | - | chr2.1:68793370-68793389 | None:intergenic | 25.0% |
! | ATAAGTTTCATAAGCTTTCA+GGG | + | chr2.1:68795559-68795578 | MS.gene002648:intron | 25.0% |
! | ATGCTAAGATTTGTGAATTT+AGG | + | chr2.1:68793126-68793145 | MS.gene002648:intron | 25.0% |
! | ATTATGATGAGACTGATAAT+AGG | - | chr2.1:68793892-68793911 | None:intergenic | 25.0% |
! | ATTGAGATCTATTAGTATCT+AGG | - | chr2.1:68795616-68795635 | None:intergenic | 25.0% |
! | CAAAACCCTAATTATGAAAT+TGG | - | chr2.1:68792800-68792819 | None:intergenic | 25.0% |
! | CACTAAAATCAAAACTATCT+AGG | - | chr2.1:68793574-68793593 | None:intergenic | 25.0% |
! | CTTTAACCTAATCAAATCAT+GGG | + | chr2.1:68792770-68792789 | MS.gene002648:intron | 25.0% |
! | GCTATCCAATTTCATAATTA+GGG | + | chr2.1:68792792-68792811 | MS.gene002648:intron | 25.0% |
! | GTTTCTAATTAGTTATTGGT+TGG | + | chr2.1:68794836-68794855 | MS.gene002648:intron | 25.0% |
! | TATAAGTTTCATAAGCTTTC+AGG | + | chr2.1:68795558-68795577 | MS.gene002648:intron | 25.0% |
! | TCTTTAACCTAATCAAATCA+TGG | + | chr2.1:68792769-68792788 | MS.gene002648:intron | 25.0% |
! | TGCTAAGATTTGTGAATTTA+GGG | + | chr2.1:68793127-68793146 | MS.gene002648:intron | 25.0% |
! | TTAAAAGCTGTTGAAATTTG+GGG | - | chr2.1:68794298-68794317 | None:intergenic | 25.0% |
! | TTGAGATCTATTAGTATCTA+GGG | - | chr2.1:68795615-68795634 | None:intergenic | 25.0% |
! | TTTCCAAAACAGAGTAAATT+AGG | - | chr2.1:68793746-68793765 | None:intergenic | 25.0% |
! | TTTCCTTTAACACTTTGAAT+TGG | - | chr2.1:68794947-68794966 | None:intergenic | 25.0% |
!! | AAAATATTTTCCGTTATCAG+TGG | + | chr2.1:68794670-68794689 | MS.gene002648:intron | 25.0% |
!! | AATCCAAAGTATTTATGTGT+CGG | + | chr2.1:68793543-68793562 | MS.gene002648:intron | 25.0% |
!! | AATTCAAAGTGTTAAAGGAA+AGG | + | chr2.1:68794946-68794965 | MS.gene002648:CDS | 25.0% |
!! | TCATAACTGTTAGATTTTGT+CGG | + | chr2.1:68794532-68794551 | MS.gene002648:intron | 25.0% |
!!! | CTTGTTTTTAAAGGGATTTT+AGG | + | chr2.1:68794508-68794527 | MS.gene002648:intron | 25.0% |
!!! | TATTGACTTTCTAAGAAATC+AGG | - | chr2.1:68794591-68794610 | None:intergenic | 25.0% |
AAAATACCAAGTTTGAACTC+TGG | - | chr2.1:68794084-68794103 | None:intergenic | 30.0% | |
AAACAAGATTACAACTGCAA+TGG | - | chr2.1:68794495-68794514 | None:intergenic | 30.0% | |
AAACTTGCAATAGCAAATGT+TGG | + | chr2.1:68795717-68795736 | MS.gene002648:CDS | 30.0% | |
ATATAAGCACTTATGTGACA+AGG | + | chr2.1:68793325-68793344 | MS.gene002648:intron | 30.0% | |
CTAATTCATCCTTACAAAAC+CGG | - | chr2.1:68794274-68794293 | None:intergenic | 30.0% | |
GACACATAAATACTTTGGAT+TGG | - | chr2.1:68793544-68793563 | None:intergenic | 30.0% | |
GATACAGAAACAAGACATAA+AGG | - | chr2.1:68793512-68793531 | None:intergenic | 30.0% | |
GGCTATCCAATTTCATAATT+AGG | + | chr2.1:68792791-68792810 | MS.gene002648:intron | 30.0% | |
GTATCATATTACCTCTCTTT+AGG | + | chr2.1:68795164-68795183 | MS.gene002648:intron | 30.0% | |
GTGGAAAGAACATTAGTTAA+TGG | + | chr2.1:68793772-68793791 | MS.gene002648:intron | 30.0% | |
TAAACACTTGTTTGAGCTTA+TGG | + | chr2.1:68793182-68793201 | MS.gene002648:intron | 30.0% | |
TAAGATTTGTGAATTTAGGG+TGG | + | chr2.1:68793130-68793149 | MS.gene002648:intron | 30.0% | |
TATAAGCACTTATGTGACAA+GGG | + | chr2.1:68793326-68793345 | MS.gene002648:intron | 30.0% | |
TTCATGGCATCATTCATAAA+CGG | + | chr2.1:68793211-68793230 | MS.gene002648:intron | 30.0% | |
TTCATTCTTCCTGTAATTGA+TGG | - | chr2.1:68795229-68795248 | None:intergenic | 30.0% | |
TTGATTAATCAGATAGGCAA+CGG | - | chr2.1:68795393-68795412 | None:intergenic | 30.0% | |
! | AAGTTTTCATTTAGGTCTAG+TGG | + | chr2.1:68794797-68794816 | MS.gene002648:intron | 30.0% |
! | AGAGTTCAAACTTGGTATTT+TGG | + | chr2.1:68794083-68794102 | MS.gene002648:intron | 30.0% |
! | ATAAAATCGGCATTGAAATC+TGG | + | chr2.1:68794322-68794341 | MS.gene002648:intron | 30.0% |
! | ATAACTGTTAGATTTTGTCG+GGG | + | chr2.1:68794534-68794553 | MS.gene002648:intron | 30.0% |
! | ATTAAGAGCTCCTTATTTGA+GGG | - | chr2.1:68794642-68794661 | None:intergenic | 30.0% |
! | ATTTTGCTGAACACTCTTTT+TGG | + | chr2.1:68793718-68793737 | MS.gene002648:intron | 30.0% |
! | CATAACTGTTAGATTTTGTC+GGG | + | chr2.1:68794533-68794552 | MS.gene002648:intron | 30.0% |
! | GATCCAATTCAAAGTGTTAA+AGG | + | chr2.1:68794941-68794960 | MS.gene002648:CDS | 30.0% |
! | GTTCCTAATTTACTCTGTTT+TGG | + | chr2.1:68793740-68793759 | MS.gene002648:intron | 30.0% |
! | GTTGATCGAAGTTTTCATTT+AGG | + | chr2.1:68794789-68794808 | MS.gene002648:intron | 30.0% |
! | TAATTTTTGACGACATGGTT+TGG | + | chr2.1:68793601-68793620 | MS.gene002648:intron | 30.0% |
!! | AACAGTCTGTTCATTAGTTT+TGG | - | chr2.1:68795331-68795350 | None:intergenic | 30.0% |
!! | ATTTGCTATTGCAAGTTTCT+CGG | - | chr2.1:68795715-68795734 | None:intergenic | 30.0% |
!!! | TCTGTTTTGGAAAAGTTTTG+TGG | + | chr2.1:68793753-68793772 | MS.gene002648:intron | 30.0% |
AACTAATGAACAGACTGTTC+AGG | + | chr2.1:68795332-68795351 | MS.gene002648:CDS | 35.0% | |
AAGCATACAGTGCATACTAT+AGG | - | chr2.1:68793962-68793981 | None:intergenic | 35.0% | |
AGTTGTTACGATATGAGGAT+TGG | - | chr2.1:68793857-68793876 | None:intergenic | 35.0% | |
ATATGCTCAAACAAACTGGA+AGG | + | chr2.1:68793085-68793104 | MS.gene002648:CDS | 35.0% | |
ATTCACGTCAAAGAGATTCA+CGG | - | chr2.1:68793658-68793677 | None:intergenic | 35.0% | |
ATTCCATAGCCATCAATTAC+AGG | + | chr2.1:68795217-68795236 | MS.gene002648:CDS | 35.0% | |
CAACCGACACATAAATACTT+TGG | - | chr2.1:68793549-68793568 | None:intergenic | 35.0% | |
CTTAGCTACCAAATACAACA+AGG | + | chr2.1:68795662-68795681 | MS.gene002648:CDS | 35.0% | |
CTTCTCAAGATGCTTAAACA+CGG | + | chr2.1:68792735-68792754 | MS.gene002648:CDS | 35.0% | |
CTTGATATGCTCAAACAAAC+TGG | + | chr2.1:68793081-68793100 | MS.gene002648:CDS | 35.0% | |
GAGCTTATGGAAATAGTTCA+TGG | + | chr2.1:68793195-68793214 | MS.gene002648:intron | 35.0% | |
TATCATTCACATCCTGGATT+TGG | + | chr2.1:68793436-68793455 | MS.gene002648:CDS | 35.0% | |
TCTAACATCGTTCAAACTCT+TGG | + | chr2.1:68795792-68795811 | MS.gene002648:CDS | 35.0% | |
TCTGAATAAACCATCCATTC+AGG | + | chr2.1:68795054-68795073 | MS.gene002648:CDS | 35.0% | |
TGGCTATGGAATAATAATGC+CGG | - | chr2.1:68795209-68795228 | None:intergenic | 35.0% | |
TTAACAATAATAGGTAGGGC+TGG | + | chr2.1:68792916-68792935 | MS.gene002648:intron | 35.0% | |
TTTATTCAGATGTCCCAGAT+TGG | - | chr2.1:68795044-68795063 | None:intergenic | 35.0% | |
TTTGATGCTTGGAGAATTTG+TGG | + | chr2.1:68792960-68792979 | MS.gene002648:CDS | 35.0% | |
! | GATATGAGGATTGGTATAGT+GGG | - | chr2.1:68793848-68793867 | None:intergenic | 35.0% |
! | GATTAAGAGCTCCTTATTTG+AGG | - | chr2.1:68794643-68794662 | None:intergenic | 35.0% |
! | TCAAAGTGTTAAAGGAAAGG+TGG | + | chr2.1:68794949-68794968 | MS.gene002648:CDS | 35.0% |
!! | CACAAAAAGAAATGGACTGA+TGG | + | chr2.1:68795276-68795295 | MS.gene002648:CDS | 35.0% |
!! | CGGTTTTGTAAGGATGAATT+AGG | + | chr2.1:68794272-68794291 | MS.gene002648:intron | 35.0% |
!! | TGGTTTGTTTCCACTGATAA+CGG | - | chr2.1:68794683-68794702 | None:intergenic | 35.0% |
!! | TTGAACAGCCTTGTTGTATT+TGG | - | chr2.1:68795673-68795692 | None:intergenic | 35.0% |
!! | TTTGCTATTGCAAGTTTCTC+GGG | - | chr2.1:68795714-68795733 | None:intergenic | 35.0% |
!!! | CTTGGTATTTTGGCTTTTGT+TGG | + | chr2.1:68794093-68794112 | MS.gene002648:intron | 35.0% |
AAGCTTTCAGGGAGAACTTA+TGG | + | chr2.1:68795570-68795589 | MS.gene002648:intron | 40.0% | |
AATAGCCATTAGTTGGCACT+TGG | - | chr2.1:68794745-68794764 | None:intergenic | 40.0% | |
AATCCACAGACAATGATGCT+TGG | + | chr2.1:68794995-68795014 | MS.gene002648:CDS | 40.0% | |
AGAATACTTTGCACGCTGTT+TGG | - | chr2.1:68794390-68794409 | None:intergenic | 40.0% | |
AGATTACAACTGCAATGGAC+CGG | - | chr2.1:68794490-68794509 | None:intergenic | 40.0% | |
ATACAACAAGGCTGTTCAAG+AGG | + | chr2.1:68795674-68795693 | MS.gene002648:CDS | 40.0% | |
ATACACAGCAGGTTCTACTA+TGG | + | chr2.1:68793485-68793504 | MS.gene002648:intron | 40.0% | |
ATCAAACCCATAACCTCCAT+GGG | - | chr2.1:68792946-68792965 | None:intergenic | 40.0% | |
ATGGATCAATGCCTAAAGAG+AGG | - | chr2.1:68795178-68795197 | None:intergenic | 40.0% | |
CATAATAGCCACTGTGACTT+AGG | + | chr2.1:68793906-68793925 | MS.gene002648:intron | 40.0% | |
CATTGAAATCTGGATCACCA+AGG | + | chr2.1:68794332-68794351 | MS.gene002648:intron | 40.0% | |
CTTAGTTTCCCCAAGAAGAT+CGG | + | chr2.1:68793979-68793998 | MS.gene002648:intron | 40.0% | |
CTTCATTGTGTTGCCTTTGA+GGG | + | chr2.1:68794196-68794215 | MS.gene002648:intron | 40.0% | |
GGATAGCCCATGATTTGATT+AGG | - | chr2.1:68792779-68792798 | None:intergenic | 40.0% | |
GTCAGAGTTGTTACGATATG+AGG | - | chr2.1:68793862-68793881 | None:intergenic | 40.0% | |
TAAGATGCAGCGTGTAATGT+GGG | + | chr2.1:68795361-68795380 | MS.gene002648:intron | 40.0% | |
TGTTGACATCAATACACAGC+AGG | + | chr2.1:68793474-68793493 | MS.gene002648:CDS | 40.0% | |
TTAAGATGCAGCGTGTAATG+TGG | + | chr2.1:68795360-68795379 | MS.gene002648:intron | 40.0% | |
TTACAGGAAGAATGAACTCG+AGG | + | chr2.1:68795233-68795252 | MS.gene002648:CDS | 40.0% | |
TTCATTGTGTTGCCTTTGAG+GGG | + | chr2.1:68794197-68794216 | MS.gene002648:intron | 40.0% | |
! | AATTTGAGACATGCTCTTCG+AGG | - | chr2.1:68795764-68795783 | None:intergenic | 40.0% |
! | AGACTTGTTCGGATGAATCT+AGG | - | chr2.1:68792698-68792717 | None:intergenic | 40.0% |
! | CGATATGAGGATTGGTATAG+TGG | - | chr2.1:68793849-68793868 | None:intergenic | 40.0% |
! | CTTCCTGTAATTGATGGCTA+TGG | - | chr2.1:68795223-68795242 | None:intergenic | 40.0% |
! | GACTTGTTCGGATGAATCTA+GGG | - | chr2.1:68792697-68792716 | None:intergenic | 40.0% |
! | GGATGAGATGTAGACTTGTT+CGG | - | chr2.1:68792709-68792728 | None:intergenic | 40.0% |
! | TTAGGTTGTTTGCTCGCTTA+TGG | + | chr2.1:68793924-68793943 | MS.gene002648:intron | 40.0% |
!! | CTCTTTAGGCATTGATCCAT+GGG | + | chr2.1:68795178-68795197 | MS.gene002648:intron | 40.0% |
!! | TATAGTGGGTTGGCAAAGTT+GGG | - | chr2.1:68793834-68793853 | None:intergenic | 40.0% |
!! | TCTCTTTAGGCATTGATCCA+TGG | + | chr2.1:68795177-68795196 | MS.gene002648:intron | 40.0% |
AAATCTGGATCACCAAGGTG+TGG | + | chr2.1:68794337-68794356 | MS.gene002648:intron | 45.0% | |
AAGCATCTTGAGAAGAGCGA+GGG | - | chr2.1:68792730-68792749 | None:intergenic | 45.0% | |
AAGGCAGACAACTTCCAATC+TGG | + | chr2.1:68795027-68795046 | MS.gene002648:CDS | 45.0% | |
ACCGTCCAATCAAGATCAGA+CGG | + | chr2.1:68794057-68794076 | MS.gene002648:intron | 45.0% | |
ACCGTCTGATCTTGATTGGA+CGG | - | chr2.1:68794061-68794080 | None:intergenic | 45.0% | |
ACTTTGCACGCTGTTTGGAT+TGG | - | chr2.1:68794385-68794404 | None:intergenic | 45.0% | |
AGATTGGAAGTTGTCTGCCT+TGG | - | chr2.1:68795028-68795047 | None:intergenic | 45.0% | |
AGGCAGACAACTTCCAATCT+GGG | + | chr2.1:68795028-68795047 | MS.gene002648:CDS | 45.0% | |
AGGCTTCAAAGAATGTTCGC+AGG | + | chr2.1:68792630-68792649 | MS.gene002648:CDS | 45.0% | |
ATCACCCATGCAAGTTATGC+CGG | + | chr2.1:68794468-68794487 | MS.gene002648:intron | 45.0% | |
ATTGTGTTGCAGACCAGAGA+TGG | + | chr2.1:68793402-68793421 | MS.gene002648:intron | 45.0% | |
CAAACCAAAGCCCGCAATTT+AGG | - | chr2.1:68794154-68794173 | None:intergenic | 45.0% | |
CAGTACTCTCTCAGATAAGC+TGG | - | chr2.1:68794418-68794437 | None:intergenic | 45.0% | |
CATCAAACCCATAACCTCCA+TGG | - | chr2.1:68792947-68792966 | None:intergenic | 45.0% | |
CCTCAAAGGCAACACAATGA+AGG | - | chr2.1:68794198-68794217 | None:intergenic | 45.0% | |
CCTTCATTGTGTTGCCTTTG+AGG | + | chr2.1:68794195-68794214 | MS.gene002648:intron | 45.0% | |
CTGCTCTGATCCCTCAAATA+AGG | + | chr2.1:68794629-68794648 | MS.gene002648:intron | 45.0% | |
CTTATTTGAGGGATCAGAGC+AGG | - | chr2.1:68794631-68794650 | None:intergenic | 45.0% | |
CTTTGCACGCTGTTTGGATT+GGG | - | chr2.1:68794384-68794403 | None:intergenic | 45.0% | |
GAGGTTATGGGTTTGATGCT+TGG | + | chr2.1:68792949-68792968 | MS.gene002648:CDS | 45.0% | |
GCAAACAACCTAAGTCACAG+TGG | - | chr2.1:68793917-68793936 | None:intergenic | 45.0% | |
GTGTCCTATCTATCCGATGT+GGG | - | chr2.1:68794234-68794253 | None:intergenic | 45.0% | |
TAAGCATCTTGAGAAGAGCG+AGG | - | chr2.1:68792731-68792750 | None:intergenic | 45.0% | |
TCAAAGCCTCAAAACTCTGC+AGG | - | chr2.1:68794895-68794914 | None:intergenic | 45.0% | |
TGATGCTTGGACAAGAACCA+AGG | + | chr2.1:68795008-68795027 | MS.gene002648:CDS | 45.0% | |
TGGAAATTCCGCCTTAACTG+CGG | + | chr2.1:68794113-68794132 | MS.gene002648:intron | 45.0% | |
TGTCCAAGCATCATTGTCTG+TGG | - | chr2.1:68795001-68795020 | None:intergenic | 45.0% | |
TGTCCTATCTATCCGATGTG+GGG | - | chr2.1:68794233-68794252 | None:intergenic | 45.0% | |
TGTGTCCTATCTATCCGATG+TGG | - | chr2.1:68794235-68794254 | None:intergenic | 45.0% | |
TTGATTGGACGGTACATACG+TGG | - | chr2.1:68794050-68794069 | None:intergenic | 45.0% | |
! | AGGCAACACAATGAAGGTGT+TGG | - | chr2.1:68794192-68794211 | None:intergenic | 45.0% |
! | CATTGATCCATGGGTTGAAC+CGG | + | chr2.1:68795187-68795206 | MS.gene002648:CDS | 45.0% |
! | GAATCTAGGGTTGGAGAATC+TGG | - | chr2.1:68792684-68792703 | None:intergenic | 45.0% |
! | GTTTGAGTTACGCACCTGAA+TGG | - | chr2.1:68795071-68795090 | None:intergenic | 45.0% |
! | TCATTGTGTTGCCTTTGAGG+GGG | + | chr2.1:68794198-68794217 | MS.gene002648:intron | 45.0% |
! | TGTTCGGATGAATCTAGGGT+TGG | - | chr2.1:68792693-68792712 | None:intergenic | 45.0% |
!! | AATAATGCCGGTTCAACCCA+TGG | - | chr2.1:68795197-68795216 | None:intergenic | 45.0% |
!! | CAACACAATGAAGGTGTTGG+AGG | - | chr2.1:68794189-68794208 | None:intergenic | 45.0% |
!! | CCTTACAAAACCGGCTTGTA+AGG | - | chr2.1:68794265-68794284 | None:intergenic | 45.0% |
!! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr2.1:68794262-68794281 | MS.gene002648:intron | 45.0% |
!! | GTATAGTGGGTTGGCAAAGT+TGG | - | chr2.1:68793835-68793854 | None:intergenic | 45.0% |
!! | TAGTTATTGGTTGGTGCTGC+TGG | + | chr2.1:68794845-68794864 | MS.gene002648:intron | 45.0% |
!! | TGAGGATTGGTATAGTGGGT+TGG | - | chr2.1:68793844-68793863 | None:intergenic | 45.0% |
ACACTCCTCACCTTACAAGC+CGG | + | chr2.1:68794252-68794271 | MS.gene002648:intron | 50.0% | |
AGCCCAGATCCGATCTTCTT+GGG | - | chr2.1:68793991-68794010 | None:intergenic | 50.0% | |
AGTGTGACTGAACCACACCT+TGG | - | chr2.1:68794352-68794371 | None:intergenic | 50.0% | |
CAAAGAATGTTCGCAGGTGC+AGG | + | chr2.1:68792636-68792655 | MS.gene002648:CDS | 50.0% | |
CACATCCTGGATTTGGCTGT+TGG | + | chr2.1:68793443-68793462 | MS.gene002648:CDS | 50.0% | |
CACTGCCAAGTGCCAACTAA+TGG | + | chr2.1:68794737-68794756 | MS.gene002648:intron | 50.0% | |
CTAACACCAGTTCCACTCTG+TGG | - | chr2.1:68793024-68793043 | None:intergenic | 50.0% | |
CTGGACCGTCTGATCTTGAT+TGG | - | chr2.1:68794065-68794084 | None:intergenic | 50.0% | |
GACAACCAACAGCCAAATCC+AGG | - | chr2.1:68793451-68793470 | None:intergenic | 50.0% | |
GACGGTCCAGAGTTCAAACT+TGG | + | chr2.1:68794075-68794094 | MS.gene002648:intron | 50.0% | |
GAGTTACGCACCTGAATGGA+TGG | - | chr2.1:68795067-68795086 | None:intergenic | 50.0% | |
GGACTGATGGCTTGACACTT+AGG | + | chr2.1:68795289-68795308 | MS.gene002648:CDS | 50.0% | |
GGCTGGTATCATTCACATCC+TGG | + | chr2.1:68793430-68793449 | MS.gene002648:CDS | 50.0% | |
GGTGTTCCCATGGAGGTTAT+GGG | + | chr2.1:68792937-68792956 | MS.gene002648:CDS | 50.0% | |
GTGTTTGCAATGCCACAGAG+TGG | + | chr2.1:68793009-68793028 | MS.gene002648:CDS | 50.0% | |
TACCAGCCAACAACCATCTC+TGG | - | chr2.1:68793418-68793437 | None:intergenic | 50.0% | |
TAGCCCCACATCGGATAGAT+AGG | + | chr2.1:68794227-68794246 | MS.gene002648:intron | 50.0% | |
TCCCCAAGAAGATCGGATCT+GGG | + | chr2.1:68793986-68794005 | MS.gene002648:intron | 50.0% | |
TGCAGACCAGAGATGGTTGT+TGG | + | chr2.1:68793409-68793428 | MS.gene002648:intron | 50.0% | |
TGGATCCACAACTACAGCCA+CGG | - | chr2.1:68794927-68794946 | None:intergenic | 50.0% | |
TGGTGTTCCCATGGAGGTTA+TGG | + | chr2.1:68792936-68792955 | MS.gene002648:CDS | 50.0% | |
TTCCCCAAGAAGATCGGATC+TGG | + | chr2.1:68793985-68794004 | MS.gene002648:intron | 50.0% | |
TTGGACGGTACATACGTGGT+TGG | - | chr2.1:68794046-68794065 | None:intergenic | 50.0% | |
! | ATGCTCTTCGAGGTGCTTCT+TGG | - | chr2.1:68795754-68795773 | None:intergenic | 50.0% |
! | ATGGACCGGCATAACTTGCA+TGG | - | chr2.1:68794476-68794495 | None:intergenic | 50.0% |
! | GGATTTGGCTGTTGGTTGTC+TGG | + | chr2.1:68793451-68793470 | MS.gene002648:CDS | 50.0% |
! | TCGTGTCCTGCAGAGTTTTG+AGG | + | chr2.1:68794886-68794905 | MS.gene002648:intron | 50.0% |
! | TCTAGGGTTGGAGAATCTGG+TGG | - | chr2.1:68792681-68792700 | None:intergenic | 50.0% |
! | TGGACCGGCATAACTTGCAT+GGG | - | chr2.1:68794475-68794494 | None:intergenic | 50.0% |
!! | AATCTGGTGGTGGATGACCT+AGG | - | chr2.1:68792668-68792687 | None:intergenic | 50.0% |
!! | ATCTGGTGGTGGATGACCTA+GGG | - | chr2.1:68792667-68792686 | None:intergenic | 50.0% |
!! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr2.1:68794260-68794279 | None:intergenic | 50.0% |
AGAATGTTCGCAGGTGCAGG+TGG | + | chr2.1:68792639-68792658 | MS.gene002648:CDS | 55.0% | |
AGCCCGCAATTTAGGCGACT+AGG | - | chr2.1:68794146-68794165 | None:intergenic | 55.0% | |
AGGGTTGGAGAATCTGGTGG+TGG | - | chr2.1:68792678-68792697 | None:intergenic | 55.0% | |
CAGCCCAGATCCGATCTTCT+TGG | - | chr2.1:68793992-68794011 | None:intergenic | 55.0% | |
CCCCCTAGTCGCCTAAATTG+CGG | + | chr2.1:68794140-68794159 | MS.gene002648:intron | 55.0% | |
CCCCTAGTCGCCTAAATTGC+GGG | + | chr2.1:68794141-68794160 | MS.gene002648:intron | 55.0% | |
CCCGCAATTTAGGCGACTAG+GGG | - | chr2.1:68794144-68794163 | None:intergenic | 55.0% | |
CCGCAATTTAGGCGACTAGG+GGG | - | chr2.1:68794143-68794162 | None:intergenic | 55.0% | |
GACCAGAGATGGTTGTTGGC+TGG | + | chr2.1:68793413-68793432 | MS.gene002648:intron | 55.0% | |
GCAATGCCACAGAGTGGAAC+TGG | + | chr2.1:68793015-68793034 | MS.gene002648:CDS | 55.0% | |
GCCCAGATCCGATCTTCTTG+GGG | - | chr2.1:68793990-68794009 | None:intergenic | 55.0% | |
GCCCGCAATTTAGGCGACTA+GGG | - | chr2.1:68794145-68794164 | None:intergenic | 55.0% | |
GGCTAAATCCACCCCCTCAA+AGG | - | chr2.1:68794212-68794231 | None:intergenic | 55.0% | |
GTCGCCTAAATTGCGGGCTT+TGG | + | chr2.1:68794147-68794166 | MS.gene002648:intron | 55.0% | |
TAGGGGGAAGACCGCAGTTA+AGG | - | chr2.1:68794127-68794146 | None:intergenic | 55.0% | |
TGCGTGCAGTCACAACCTTG+TGG | + | chr2.1:68794010-68794029 | MS.gene002648:intron | 55.0% | |
! | GGGTGGATTTAGCCCCACAT+CGG | + | chr2.1:68794218-68794237 | MS.gene002648:intron | 55.0% |
! | GGTGTTGGAGGCTGCAATGA+AGG | - | chr2.1:68794177-68794196 | None:intergenic | 55.0% |
! | TTGTGTTGCCTTTGAGGGGG+TGG | + | chr2.1:68794201-68794220 | MS.gene002648:intron | 55.0% |
!! | GGCTTTGAATCAGAGAGCCG+TGG | + | chr2.1:68794907-68794926 | MS.gene002648:CDS | 55.0% |
GAGAGCCGTGGCTGTAGTTG+TGG | + | chr2.1:68794919-68794938 | MS.gene002648:CDS | 60.0% | |
GGGGAAGACCGCAGTTAAGG+CGG | - | chr2.1:68794124-68794143 | None:intergenic | 60.0% | |
GTTGGCTGCATGCAGCCACA+AGG | - | chr2.1:68794028-68794047 | None:intergenic | 60.0% | |
! | AGGTAGGGCTGGTGTTCCCA+TGG | + | chr2.1:68792927-68792946 | MS.gene002648:intron | 60.0% |
! | TAGGGCTGGTGTTCCCATGG+AGG | + | chr2.1:68792930-68792949 | MS.gene002648:CDS | 60.0% |
GCAGGTGCAGGTGGAGCCCT+AGG | + | chr2.1:68792648-68792667 | MS.gene002648:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 68792624 | 68795842 | 68792624 | ID=MS.gene002648 |
chr2.1 | mRNA | 68792624 | 68795842 | 68792624 | ID=MS.gene002648.t1;Parent=MS.gene002648 |
chr2.1 | exon | 68792624 | 68792756 | 68792624 | ID=MS.gene002648.t1.exon1;Parent=MS.gene002648.t1 |
chr2.1 | CDS | 68792624 | 68792756 | 68792624 | ID=cds.MS.gene002648.t1;Parent=MS.gene002648.t1 |
chr2.1 | exon | 68792929 | 68793106 | 68792929 | ID=MS.gene002648.t1.exon2;Parent=MS.gene002648.t1 |
chr2.1 | CDS | 68792929 | 68793106 | 68792929 | ID=cds.MS.gene002648.t1;Parent=MS.gene002648.t1 |
chr2.1 | exon | 68793414 | 68793495 | 68793414 | ID=MS.gene002648.t1.exon3;Parent=MS.gene002648.t1 |
chr2.1 | CDS | 68793414 | 68793495 | 68793414 | ID=cds.MS.gene002648.t1;Parent=MS.gene002648.t1 |
chr2.1 | exon | 68794899 | 68795075 | 68794899 | ID=MS.gene002648.t1.exon4;Parent=MS.gene002648.t1 |
chr2.1 | CDS | 68794899 | 68795075 | 68794899 | ID=cds.MS.gene002648.t1;Parent=MS.gene002648.t1 |
chr2.1 | exon | 68795186 | 68795353 | 68795186 | ID=MS.gene002648.t1.exon5;Parent=MS.gene002648.t1 |
chr2.1 | CDS | 68795186 | 68795353 | 68795186 | ID=cds.MS.gene002648.t1;Parent=MS.gene002648.t1 |
chr2.1 | exon | 68795651 | 68795842 | 68795651 | ID=MS.gene002648.t1.exon6;Parent=MS.gene002648.t1 |
chr2.1 | CDS | 68795651 | 68795842 | 68795651 | ID=cds.MS.gene002648.t1;Parent=MS.gene002648.t1 |
Gene Sequence |
Protein sequence |