Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017080.t1 | XP_003617397.1 | 100 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 6.10E-98 | 366.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017080.t1 | Q9ATF5 | 89.9 | 178 | 18 | 0 | 1 | 178 | 1 | 178 | 6.9e-90 | 331.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017080.t1 | B7FJC3 | 100.0 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 4.4e-98 | 366.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017080 | MS.gene45549 | PPI |
| MS.gene017080 | MS.gene78387 | PPI |
| MS.gene017078 | MS.gene017080 | PPI |
| MS.gene017080 | MS.gene29778 | PPI |
| MS.gene69509 | MS.gene017080 | PPI |
| MS.gene038298 | MS.gene017080 | PPI |
| MS.gene09188 | MS.gene017080 | PPI |
| MS.gene45549 | MS.gene017080 | PPI |
| MS.gene09187 | MS.gene017080 | PPI |
| MS.gene017080 | MS.gene92155 | PPI |
| MS.gene038296 | MS.gene017080 | PPI |
| MS.gene017080 | MS.gene09046 | PPI |
| MS.gene017080 | MS.gene31095 | PPI |
| MS.gene48046 | MS.gene017080 | PPI |
| MS.gene017080 | MS.gene052057 | PPI |
| MS.gene039012 | MS.gene017080 | PPI |
| MS.gene017080 | MS.gene22178 | PPI |
| MS.gene017080 | MS.gene48048 | PPI |
| MS.gene023381 | MS.gene017080 | PPI |
| MS.gene019193 | MS.gene017080 | PPI |
| MS.gene017080 | MS.gene08259 | PPI |
| MS.gene08260 | MS.gene017080 | PPI |
| MS.gene77617 | MS.gene017080 | PPI |
| MS.gene017080 | MS.gene073967 | PPI |
| MS.gene017080 | MS.gene057092 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017080.t1 | MTR_5g091135 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene017080.t1 | MTR_5g091120 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene017080.t1 | MTR_2g098000 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene017080.t1 | MTR_3g046320 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene017080.t1 | MTR_3g046320 | 95.402 | 174 | 8 | 0 | 5 | 178 | 3 | 176 | 3.08e-124 | 347 |
| MS.gene017080.t1 | MTR_2g019720 | 62.353 | 85 | 32 | 0 | 92 | 176 | 1 | 85 | 1.04e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017080.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 5 | 178 | 2.89e-119 | 335 |
| MS.gene017080.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 44 | 217 | 3.11e-119 | 336 |
| MS.gene017080.t1 | AT1G29965 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 1.19e-117 | 330 |
| MS.gene017080.t1 | AT3G14600 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 4.03e-117 | 329 |
| MS.gene017080.t1 | AT1G29970 | 89.017 | 173 | 19 | 0 | 6 | 178 | 140 | 312 | 1.03e-114 | 328 |
Find 48 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATAGACTTACCAGAATT+TGG | 0.177369 | 5.1:-72615896 | None:intergenic |
| CACCAGAGGGAACTTGATTT+TGG | 0.187302 | 5.1:-72617519 | None:intergenic |
| CATAAACAGGTTGGGCTTCT+TGG | 0.201042 | 5.1:-72617591 | None:intergenic |
| AGATTAAGAACTATGGAATT+TGG | 0.243479 | 5.1:+72617297 | MS.gene017080:CDS |
| GAAAAGCAATGGACAAGTTT+TGG | 0.246012 | 5.1:+72616045 | MS.gene017080:CDS |
| GTTGGGCTTCTTGGCTTTGT+AGG | 0.248408 | 5.1:-72617582 | None:intergenic |
| ACGAAATGGCATCTCGTCAT+AGG | 0.320455 | 5.1:+72617408 | MS.gene017080:CDS |
| AGATTTATCGTATGAAGCTT+TGG | 0.340515 | 5.1:+72615848 | MS.gene017080:CDS |
| GACTTACCAGAATTTGGATT+TGG | 0.342784 | 5.1:-72615890 | None:intergenic |
| GATTTATCGTATGAAGCTTT+GGG | 0.356570 | 5.1:+72615849 | MS.gene017080:CDS |
| CCTACCAAGATTAAGAACTA+TGG | 0.366976 | 5.1:+72617290 | MS.gene017080:CDS |
| TTCGTGCCAAATCCAAATTC+TGG | 0.381119 | 5.1:+72615884 | MS.gene017080:CDS |
| TCCCGGCTAATCTGTGCAAA+AGG | 0.396699 | 5.1:+72617471 | MS.gene017080:CDS |
| AATTCCATAGTTCTTAATCT+TGG | 0.403701 | 5.1:-72617294 | None:intergenic |
| ATTCACTGAATCACATAAAC+AGG | 0.404006 | 5.1:-72617604 | None:intergenic |
| TGGTGGCTGTCTTAATGATC+TGG | 0.405710 | 5.1:-72617448 | None:intergenic |
| AGCTTCATACGATAAATCTT+AGG | 0.433968 | 5.1:-72615844 | None:intergenic |
| GGATTTGGCACGAACCTCAT+TGG | 0.442665 | 5.1:-72615875 | None:intergenic |
| TACCGTGATACTACTCTAAA+CGG | 0.448863 | 5.1:+72617365 | MS.gene017080:CDS |
| TTTCTTAAGGAAGTTGAAGA+AGG | 0.460521 | 5.1:+72616018 | MS.gene017080:CDS |
| CTCTGGTGTACAAGAAGATT+AGG | 0.461451 | 5.1:+72617534 | MS.gene017080:CDS |
| ATTGTTGTAGGTATTTCTTA+AGG | 0.471637 | 5.1:+72616005 | MS.gene017080:intron |
| CTGAATCACATAAACAGGTT+GGG | 0.486125 | 5.1:-72617599 | None:intergenic |
| CTCTTCCGACAACCTGGTAC+TGG | 0.493497 | 5.1:-72615795 | None:intergenic |
| TGGCATCTCGTCATAGGGTC+AGG | 0.499078 | 5.1:+72617414 | MS.gene017080:CDS |
| TTGCGTTATCAGAGTCGTAC+TGG | 0.505845 | 5.1:+72617320 | MS.gene017080:CDS |
| GGAGACAATGTACAACGAAA+TGG | 0.522780 | 5.1:+72617394 | MS.gene017080:CDS |
| AAGAGCTCTTCCCACCGAAA+AGG | 0.526516 | 5.1:+72615813 | MS.gene017080:CDS |
| TTTCACCAGTACCAGGTTGT+CGG | 0.538716 | 5.1:+72615790 | MS.gene017080:CDS |
| CCCGGCTAATCTGTGCAAAA+GGG | 0.540578 | 5.1:+72617472 | MS.gene017080:CDS |
| CGAAATGGCATCTCGTCATA+GGG | 0.541059 | 5.1:+72617409 | MS.gene017080:CDS |
| CCATAGTTCTTAATCTTGGT+AGG | 0.548600 | 5.1:-72617290 | None:intergenic |
| GAAACAGTTTCACCAGTACC+AGG | 0.549157 | 5.1:+72615783 | MS.gene017080:intron |
| TTCCAAAATCAAGTTCCCTC+TGG | 0.549470 | 5.1:+72617517 | MS.gene017080:CDS |
| AAGAAGGTTAAGAAAAGCAA+TGG | 0.552641 | 5.1:+72616034 | MS.gene017080:CDS |
| ACTGAATCACATAAACAGGT+TGG | 0.563649 | 5.1:-72617600 | None:intergenic |
| GTCTTAATGATCTGGATGCA+AGG | 0.568738 | 5.1:-72617440 | None:intergenic |
| GAAGAGCTCTTCCGACAACC+TGG | 0.575483 | 5.1:-72615801 | None:intergenic |
| TTTGCACAGATTAGCCGGGA+TGG | 0.581078 | 5.1:-72617468 | None:intergenic |
| GCACAGATTAGCCGGGATGG+TGG | 0.585618 | 5.1:-72617465 | None:intergenic |
| CATTAAGACAGCCACCATCC+CGG | 0.598852 | 5.1:+72617454 | MS.gene017080:CDS |
| AGAAGATTAGGCCACCAACT+AGG | 0.603627 | 5.1:+72617546 | MS.gene017080:CDS |
| TGGTTATCACAATATGTACA+AGG | 0.613559 | 5.1:+72617340 | MS.gene017080:CDS |
| GAAGCTTTGGGCAACCAATG+AGG | 0.631227 | 5.1:+72615861 | MS.gene017080:CDS |
| CTAATCTTCTTGTACACCAG+AGG | 0.631597 | 5.1:-72617533 | None:intergenic |
| TAATCTTCTTGTACACCAGA+GGG | 0.642722 | 5.1:-72617532 | None:intergenic |
| TACTACTCTAAACGGTGCTG+TGG | 0.650976 | 5.1:+72617373 | MS.gene017080:CDS |
| CACCGTTTAGAGTAGTATCA+CGG | 0.660256 | 5.1:-72617367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATGTTAATTGTTGT+AGG | + | chr5.1:72615993-72616012 | MS.gene017080:intron | 15.0% |
| !!! | GTAAATAAGCTTTTTTAATA+TGG | - | chr5.1:72616583-72616602 | None:intergenic | 15.0% |
| !!! | TTTCAAAGAAGTTTTATTTT+GGG | + | chr5.1:72616697-72616716 | MS.gene017080:intron | 15.0% |
| !!! | TTTTCAAAGAAGTTTTATTT+TGG | + | chr5.1:72616696-72616715 | MS.gene017080:intron | 15.0% |
| !! | AAAAAAGAACAGAAAAACAT+AGG | - | chr5.1:72616724-72616743 | None:intergenic | 20.0% |
| !! | AGTTGTTAATTGAAATTTGA+TGG | + | chr5.1:72616100-72616119 | MS.gene017080:intron | 20.0% |
| !! | CATTTATTCTAGTAAAAGTA+AGG | + | chr5.1:72617144-72617163 | MS.gene017080:intron | 20.0% |
| !! | GATAAAAATTGAACACAAAA+TGG | - | chr5.1:72616855-72616874 | None:intergenic | 20.0% |
| !! | TTAATTGAAATTTGATGGAA+GGG | + | chr5.1:72616105-72616124 | MS.gene017080:intron | 20.0% |
| ! | AAAAAAAAATGAAGGAAGGA+AGG | - | chr5.1:72615724-72615743 | None:intergenic | 25.0% |
| ! | AAAGATCTGCAAACAAAAAA+AGG | - | chr5.1:72617261-72617280 | None:intergenic | 25.0% |
| ! | AAGATAAGTCAATACAAACT+TGG | - | chr5.1:72616445-72616464 | None:intergenic | 25.0% |
| ! | AATCTAATGTTAAGGTGAAA+TGG | + | chr5.1:72616363-72616382 | MS.gene017080:intron | 25.0% |
| ! | AATTCCATAGTTCTTAATCT+TGG | - | chr5.1:72617297-72617316 | None:intergenic | 25.0% |
| ! | ACACAAAAAAAAATGAAGGA+AGG | - | chr5.1:72615728-72615747 | None:intergenic | 25.0% |
| ! | ACACACACAAAAAAAAATGA+AGG | - | chr5.1:72615732-72615751 | None:intergenic | 25.0% |
| ! | AGATTAAGAACTATGGAATT+TGG | + | chr5.1:72617297-72617316 | MS.gene017080:CDS | 25.0% |
| ! | ATCTAATGTTAAGGTGAAAT+GGG | + | chr5.1:72616364-72616383 | MS.gene017080:intron | 25.0% |
| ! | ATTGTTGTAGGTATTTCTTA+AGG | + | chr5.1:72616005-72616024 | MS.gene017080:intron | 25.0% |
| ! | CACCTTAACATTAGATTTAA+GGG | - | chr5.1:72616360-72616379 | None:intergenic | 25.0% |
| ! | GTTAATTGAAATTTGATGGA+AGG | + | chr5.1:72616104-72616123 | MS.gene017080:intron | 25.0% |
| ! | TAATAACTAAAGCTAACACA+TGG | - | chr5.1:72617194-72617213 | None:intergenic | 25.0% |
| ! | TCACCTTAACATTAGATTTA+AGG | - | chr5.1:72616361-72616380 | None:intergenic | 25.0% |
| ! | TGAAAATATATCCATGCAAA+GGG | + | chr5.1:72616412-72616431 | MS.gene017080:intron | 25.0% |
| ! | TGGGAAAAATGATGTAAAAT+TGG | + | chr5.1:72616383-72616402 | MS.gene017080:intron | 25.0% |
| ! | TTGAAAATATATCCATGCAA+AGG | + | chr5.1:72616411-72616430 | MS.gene017080:intron | 25.0% |
| !! | AAACTTCTTTGAAAAAGTGA+CGG | - | chr5.1:72616691-72616710 | None:intergenic | 25.0% |
| !! | AAGTAGTTAGTACTTTTGTT+GGG | + | chr5.1:72616875-72616894 | MS.gene017080:intron | 25.0% |
| !!! | ATTTAAGACTGATTTGGAAA+GGG | + | chr5.1:72617033-72617052 | MS.gene017080:intron | 25.0% |
| !!! | GTATTTAACTTTTATAGCAG+CGG | - | chr5.1:72616833-72616852 | None:intergenic | 25.0% |
| !!! | GTTTTGATTTAAGACTGATT+TGG | + | chr5.1:72617027-72617046 | MS.gene017080:intron | 25.0% |
| AAAGTAAGGCTAATTGAACT+TGG | + | chr5.1:72617158-72617177 | MS.gene017080:intron | 30.0% | |
| AACATAGACTTACCAGAATT+TGG | - | chr5.1:72615899-72615918 | None:intergenic | 30.0% | |
| AAGAAGGTTAAGAAAAGCAA+TGG | + | chr5.1:72616034-72616053 | MS.gene017080:CDS | 30.0% | |
| AGATTTATCGTATGAAGCTT+TGG | + | chr5.1:72615848-72615867 | MS.gene017080:CDS | 30.0% | |
| AGCTTCATACGATAAATCTT+AGG | - | chr5.1:72615847-72615866 | None:intergenic | 30.0% | |
| GATTTATCGTATGAAGCTTT+GGG | + | chr5.1:72615849-72615868 | MS.gene017080:CDS | 30.0% | |
| TAACTTCAATTGCAGTTTGT+TGG | + | chr5.1:72617217-72617236 | MS.gene017080:intron | 30.0% | |
| TATTATTGATCAGCTTGTCA+AGG | + | chr5.1:72616509-72616528 | MS.gene017080:intron | 30.0% | |
| TGGTTATCACAATATGTACA+AGG | + | chr5.1:72617340-72617359 | MS.gene017080:CDS | 30.0% | |
| TTCACATGAATCACAGTTTA+GGG | - | chr5.1:72616768-72616787 | None:intergenic | 30.0% | |
| TTCTGTTTGTGATTATTGCT+GGG | + | chr5.1:72616938-72616957 | MS.gene017080:intron | 30.0% | |
| TTTCACATGAATCACAGTTT+AGG | - | chr5.1:72616769-72616788 | None:intergenic | 30.0% | |
| TTTCTTAAGGAAGTTGAAGA+AGG | + | chr5.1:72616018-72616037 | MS.gene017080:CDS | 30.0% | |
| ! | AGTAGTTAGTACTTTTGTTG+GGG | + | chr5.1:72616876-72616895 | MS.gene017080:intron | 30.0% |
| ! | CAAGTAGTTAGTACTTTTGT+TGG | + | chr5.1:72616874-72616893 | MS.gene017080:intron | 30.0% |
| ! | CATTAAGTTGTGTAACAAAC+TGG | + | chr5.1:72616334-72616353 | MS.gene017080:intron | 30.0% |
| !! | GATTTAAGACTGATTTGGAA+AGG | + | chr5.1:72617032-72617051 | MS.gene017080:intron | 30.0% |
| ACAAAAGCTCTACTTGCAAT+CGG | - | chr5.1:72616919-72616938 | None:intergenic | 35.0% | |
| CAAAATACGCCAATTCATTC+AGG | + | chr5.1:72616624-72616643 | MS.gene017080:intron | 35.0% | |
| CCATAGTTCTTAATCTTGGT+AGG | - | chr5.1:72617293-72617312 | None:intergenic | 35.0% | |
| CCTACCAAGATTAAGAACTA+TGG | + | chr5.1:72617290-72617309 | MS.gene017080:CDS | 35.0% | |
| GAAGGAAATGAAAGGATTAG+TGG | - | chr5.1:72615706-72615725 | None:intergenic | 35.0% | |
| GACTTACCAGAATTTGGATT+TGG | - | chr5.1:72615893-72615912 | None:intergenic | 35.0% | |
| GATTCGTAGAATCACTTCTT+TGG | + | chr5.1:72616191-72616210 | MS.gene017080:intron | 35.0% | |
| GGCCCTTAAATCTAATGTTA+AGG | + | chr5.1:72616355-72616374 | MS.gene017080:intron | 35.0% | |
| GTTCTGTTTGTGATTATTGC+TGG | + | chr5.1:72616937-72616956 | MS.gene017080:intron | 35.0% | |
| TAATCTTCTTGTACACCAGA+GGG | - | chr5.1:72617535-72617554 | None:intergenic | 35.0% | |
| TACCGTGATACTACTCTAAA+CGG | + | chr5.1:72617365-72617384 | MS.gene017080:CDS | 35.0% | |
| TCAACTATCAAAGTAGTCAC+TGG | - | chr5.1:72617072-72617091 | None:intergenic | 35.0% | |
| TGTGTGTGTGAATCTTAACA+CGG | + | chr5.1:72615745-72615764 | MS.gene017080:intron | 35.0% | |
| ! | AAAGGATTAGTGGTAGTGTT+TGG | - | chr5.1:72615696-72615715 | None:intergenic | 35.0% |
| ! | CTTAGGATGTTCATCCTTTT+CGG | - | chr5.1:72615830-72615849 | None:intergenic | 35.0% |
| ! | GAAAAGCAATGGACAAGTTT+TGG | + | chr5.1:72616045-72616064 | MS.gene017080:CDS | 35.0% |
| ! | TAGTACTTTTGTTGGGGAAA+GGG | + | chr5.1:72616882-72616901 | MS.gene017080:intron | 35.0% |
| ! | TTAGTACTTTTGTTGGGGAA+AGG | + | chr5.1:72616881-72616900 | MS.gene017080:intron | 35.0% |
| !!! | AACTTGTTTTGAGAAGTCAC+TGG | + | chr5.1:72616983-72617002 | MS.gene017080:intron | 35.0% |
| !!! | ACAAGTTTTGGCTATCAATG+AGG | + | chr5.1:72616057-72616076 | MS.gene017080:CDS | 35.0% |
| !!! | TGGCTTTGTAGGTTGTTTTT+AGG | - | chr5.1:72617574-72617593 | None:intergenic | 35.0% |
| AGGCTAATTGAACTTGGAGT+AGG | + | chr5.1:72617164-72617183 | MS.gene017080:intron | 40.0% | |
| CTAATCTTCTTGTACACCAG+AGG | - | chr5.1:72617536-72617555 | None:intergenic | 40.0% | |
| CTCTGGTGTACAAGAAGATT+AGG | + | chr5.1:72617534-72617553 | MS.gene017080:CDS | 40.0% | |
| GAAGGAAGGAAGGAAATGAA+AGG | - | chr5.1:72615714-72615733 | None:intergenic | 40.0% | |
| GGAGACAATGTACAACGAAA+TGG | + | chr5.1:72617394-72617413 | MS.gene017080:CDS | 40.0% | |
| GTCTTAATGATCTGGATGCA+AGG | - | chr5.1:72617443-72617462 | None:intergenic | 40.0% | |
| TTCCAAAATCAAGTTCCCTC+TGG | + | chr5.1:72617517-72617536 | MS.gene017080:CDS | 40.0% | |
| TTCGTGCCAAATCCAAATTC+TGG | + | chr5.1:72615884-72615903 | MS.gene017080:CDS | 40.0% | |
| ! | CACCGTTTAGAGTAGTATCA+CGG | - | chr5.1:72617370-72617389 | None:intergenic | 40.0% |
| !! | CTTGGTGCGGATTTGATTTT+GGG | + | chr5.1:72616654-72616673 | MS.gene017080:intron | 40.0% |
| !!! | GTTGTTTTTAGGCTCCTAGT+TGG | - | chr5.1:72617563-72617582 | None:intergenic | 40.0% |
| AAAGCTCTACTTGCAATCGG+AGG | - | chr5.1:72616916-72616935 | None:intergenic | 45.0% | |
| ACGAAATGGCATCTCGTCAT+AGG | + | chr5.1:72617408-72617427 | MS.gene017080:CDS | 45.0% | |
| AGAAGATTAGGCCACCAACT+AGG | + | chr5.1:72617546-72617565 | MS.gene017080:CDS | 45.0% | |
| AGCATAGGGCCTGAATGAAT+TGG | - | chr5.1:72616636-72616655 | None:intergenic | 45.0% | |
| ATATCCATGCAAAGGGAGAC+AGG | + | chr5.1:72616419-72616438 | MS.gene017080:intron | 45.0% | |
| ATCAAATCCGCACCAAGCAT+AGG | - | chr5.1:72616651-72616670 | None:intergenic | 45.0% | |
| ATTCATTCAGGCCCTATGCT+TGG | + | chr5.1:72616636-72616655 | MS.gene017080:intron | 45.0% | |
| CGAAATGGCATCTCGTCATA+GGG | + | chr5.1:72617409-72617428 | MS.gene017080:CDS | 45.0% | |
| GAAACAGTTTCACCAGTACC+AGG | + | chr5.1:72615783-72615802 | MS.gene017080:intron | 45.0% | |
| TCAAATCCGCACCAAGCATA+GGG | - | chr5.1:72616650-72616669 | None:intergenic | 45.0% | |
| TGGTGGCTGTCTTAATGATC+TGG | - | chr5.1:72617451-72617470 | None:intergenic | 45.0% | |
| TTGCGTTATCAGAGTCGTAC+TGG | + | chr5.1:72617320-72617339 | MS.gene017080:CDS | 45.0% | |
| TTTCACCAGTACCAGGTTGT+CGG | + | chr5.1:72615790-72615809 | MS.gene017080:CDS | 45.0% | |
| ! | ACTTTTGTTGGGGAAAGGGA+AGG | + | chr5.1:72616886-72616905 | MS.gene017080:intron | 45.0% |
| ! | AGGATGTTCATCCTTTTCGG+TGG | - | chr5.1:72615827-72615846 | None:intergenic | 45.0% |
| ! | CACCAGAGGGAACTTGATTT+TGG | - | chr5.1:72617522-72617541 | None:intergenic | 45.0% |
| ! | CATAAACAGGTTGGGCTTCT+TGG | - | chr5.1:72617594-72617613 | None:intergenic | 45.0% |
| ! | GGATGTTCATCCTTTTCGGT+GGG | - | chr5.1:72615826-72615845 | None:intergenic | 45.0% |
| ! | TACTACTCTAAACGGTGCTG+TGG | + | chr5.1:72617373-72617392 | MS.gene017080:CDS | 45.0% |
| ! | TCCCTTTTGCACAGATTAGC+CGG | - | chr5.1:72617476-72617495 | None:intergenic | 45.0% |
| !! | GTTTTTAGGCTCCTAGTTGG+TGG | - | chr5.1:72617560-72617579 | None:intergenic | 45.0% |
| !!! | GCTTGGTGCGGATTTGATTT+TGG | + | chr5.1:72616653-72616672 | MS.gene017080:intron | 45.0% |
| AAGAGCTCTTCCCACCGAAA+AGG | + | chr5.1:72615813-72615832 | MS.gene017080:CDS | 50.0% | |
| CATTAAGACAGCCACCATCC+CGG | + | chr5.1:72617454-72617473 | MS.gene017080:CDS | 50.0% | |
| CCCGGCTAATCTGTGCAAAA+GGG | + | chr5.1:72617472-72617491 | MS.gene017080:CDS | 50.0% | |
| GGATTTGGCACGAACCTCAT+TGG | - | chr5.1:72615878-72615897 | None:intergenic | 50.0% | |
| TCCCGGCTAATCTGTGCAAA+AGG | + | chr5.1:72617471-72617490 | MS.gene017080:CDS | 50.0% | |
| ! | TTTGCACAGATTAGCCGGGA+TGG | - | chr5.1:72617471-72617490 | None:intergenic | 50.0% |
| !! | CCCTTTTGCACAGATTAGCC+GGG | - | chr5.1:72617475-72617494 | None:intergenic | 50.0% |
| !! | GAAGCTTTGGGCAACCAATG+AGG | + | chr5.1:72615861-72615880 | MS.gene017080:CDS | 50.0% |
| !! | GTTGGGCTTCTTGGCTTTGT+AGG | - | chr5.1:72617585-72617604 | None:intergenic | 50.0% |
| CTCTTCCGACAACCTGGTAC+TGG | - | chr5.1:72615798-72615817 | None:intergenic | 55.0% | |
| GAAGAGCTCTTCCGACAACC+TGG | - | chr5.1:72615804-72615823 | None:intergenic | 55.0% | |
| TGGCATCTCGTCATAGGGTC+AGG | + | chr5.1:72617414-72617433 | MS.gene017080:CDS | 55.0% | |
| TTGGCCTGTCTCCCTTTGCA+TGG | - | chr5.1:72616426-72616445 | None:intergenic | 55.0% | |
| ! | TTCAGGCCCTATGCTTGGTG+CGG | + | chr5.1:72616641-72616660 | MS.gene017080:intron | 55.0% |
| ! | GCACAGATTAGCCGGGATGG+TGG | - | chr5.1:72617468-72617487 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 72615668 | 72617616 | 72615668 | ID=MS.gene017080 |
| chr5.1 | mRNA | 72615668 | 72617616 | 72615668 | ID=MS.gene017080.t1;Parent=MS.gene017080 |
| chr5.1 | exon | 72615668 | 72615682 | 72615668 | ID=MS.gene017080.t1.exon1;Parent=MS.gene017080.t1 |
| chr5.1 | CDS | 72615668 | 72615682 | 72615668 | ID=cds.MS.gene017080.t1;Parent=MS.gene017080.t1 |
| chr5.1 | exon | 72615790 | 72615905 | 72615790 | ID=MS.gene017080.t1.exon2;Parent=MS.gene017080.t1 |
| chr5.1 | CDS | 72615790 | 72615905 | 72615790 | ID=cds.MS.gene017080.t1;Parent=MS.gene017080.t1 |
| chr5.1 | exon | 72616015 | 72616078 | 72616015 | ID=MS.gene017080.t1.exon3;Parent=MS.gene017080.t1 |
| chr5.1 | CDS | 72616015 | 72616078 | 72616015 | ID=cds.MS.gene017080.t1;Parent=MS.gene017080.t1 |
| chr5.1 | exon | 72617275 | 72617616 | 72617275 | ID=MS.gene017080.t1.exon4;Parent=MS.gene017080.t1 |
| chr5.1 | CDS | 72617275 | 72617616 | 72617275 | ID=cds.MS.gene017080.t1;Parent=MS.gene017080.t1 |
| Gene Sequence |
| Protein sequence |
