Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48048.t1 | XP_003617397.1 | 100 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 6.10E-98 | 366.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48048.t1 | Q9ATF5 | 89.9 | 178 | 18 | 0 | 1 | 178 | 1 | 178 | 6.9e-90 | 331.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48048.t1 | B7FJC3 | 100.0 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 4.4e-98 | 366.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene48048 | 0.886525 | 3.17E-72 | -1.69E-46 |
| MS.gene050290 | MS.gene48048 | 0.828954 | 6.74E-55 | -1.69E-46 |
| MS.gene051904 | MS.gene48048 | 0.822578 | 2.20E-53 | -1.69E-46 |
| MS.gene051963 | MS.gene48048 | 0.814273 | 1.68E-51 | -1.69E-46 |
| MS.gene054733 | MS.gene48048 | 0.84432 | 8.13E-59 | -1.69E-46 |
| MS.gene054937 | MS.gene48048 | 0.835918 | 1.27E-56 | -1.69E-46 |
| MS.gene057052 | MS.gene48048 | 0.870775 | 1.13E-66 | -1.69E-46 |
| MS.gene057092 | MS.gene48048 | 0.90474 | 8.95E-80 | -1.69E-46 |
| MS.gene057235 | MS.gene48048 | 0.889226 | 2.93E-73 | -1.69E-46 |
| MS.gene057272 | MS.gene48048 | 0.814433 | 1.54E-51 | -1.69E-46 |
| MS.gene058994 | MS.gene48048 | 0.855305 | 6.90E-62 | -1.69E-46 |
| MS.gene059893 | MS.gene48048 | 0.802725 | 4.90E-49 | -1.69E-46 |
| MS.gene060574 | MS.gene48048 | 0.816973 | 4.19E-52 | -1.69E-46 |
| MS.gene060856 | MS.gene48048 | 0.847706 | 9.76E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77617 | MS.gene48048 | PPI |
| MS.gene017078 | MS.gene48048 | PPI |
| MS.gene29778 | MS.gene48048 | PPI |
| MS.gene69509 | MS.gene48048 | PPI |
| MS.gene48048 | MS.gene92155 | PPI |
| MS.gene48048 | MS.gene09046 | PPI |
| MS.gene48048 | MS.gene31095 | PPI |
| MS.gene45549 | MS.gene48048 | PPI |
| MS.gene052057 | MS.gene48048 | PPI |
| MS.gene038296 | MS.gene48048 | PPI |
| MS.gene48046 | MS.gene48048 | PPI |
| MS.gene038298 | MS.gene48048 | PPI |
| MS.gene09188 | MS.gene48048 | PPI |
| MS.gene78387 | MS.gene48048 | PPI |
| MS.gene48048 | MS.gene073967 | PPI |
| MS.gene09187 | MS.gene48048 | PPI |
| MS.gene08260 | MS.gene48048 | PPI |
| MS.gene08259 | MS.gene48048 | PPI |
| MS.gene039012 | MS.gene48048 | PPI |
| MS.gene017080 | MS.gene48048 | PPI |
| MS.gene057092 | MS.gene48048 | PPI |
| MS.gene023381 | MS.gene48048 | PPI |
| MS.gene48048 | MS.gene78387 | PPI |
| MS.gene019193 | MS.gene48048 | PPI |
| MS.gene22178 | MS.gene48048 | PPI |
| MS.gene31095 | MS.gene48048 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48048.t1 | MTR_5g091135 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene48048.t1 | MTR_5g091120 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene48048.t1 | MTR_2g098000 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene48048.t1 | MTR_3g046320 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene48048.t1 | MTR_3g046320 | 95.402 | 174 | 8 | 0 | 5 | 178 | 3 | 176 | 3.08e-124 | 347 |
| MS.gene48048.t1 | MTR_2g019720 | 62.353 | 85 | 32 | 0 | 92 | 176 | 1 | 85 | 1.04e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48048.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 5 | 178 | 2.89e-119 | 335 |
| MS.gene48048.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 44 | 217 | 3.11e-119 | 336 |
| MS.gene48048.t1 | AT1G29965 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 1.19e-117 | 330 |
| MS.gene48048.t1 | AT3G14600 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 4.03e-117 | 329 |
| MS.gene48048.t1 | AT1G29970 | 89.017 | 173 | 19 | 0 | 6 | 178 | 140 | 312 | 1.03e-114 | 328 |
Find 50 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATAGACTTACCAGAATT+TGG | 0.177369 | 5.2:-77099145 | None:intergenic |
| CACCAGAGGGAACTTGATTT+TGG | 0.187302 | 5.2:-77100768 | None:intergenic |
| CATAAACAGGTTGGGCTTCT+TGG | 0.201042 | 5.2:-77100840 | None:intergenic |
| AGATTAAGAACTATGGAATT+TGG | 0.243479 | 5.2:+77100546 | MS.gene48048:CDS |
| GAAAAGCAATGGACAAGTTT+TGG | 0.246012 | 5.2:+77099294 | MS.gene48048:CDS |
| GTTGGGCTTCTTGGCTTTGT+AGG | 0.248408 | 5.2:-77100831 | None:intergenic |
| ACGAAATGGCATCTCGTCAT+AGG | 0.320455 | 5.2:+77100657 | MS.gene48048:CDS |
| AGATTTATCGTATGAAGCTT+TGG | 0.340515 | 5.2:+77099097 | MS.gene48048:CDS |
| GACTTACCAGAATTTGGATT+TGG | 0.342784 | 5.2:-77099139 | None:intergenic |
| GATTTATCGTATGAAGCTTT+GGG | 0.356570 | 5.2:+77099098 | MS.gene48048:CDS |
| CCTACCAAGATTAAGAACTA+TGG | 0.366976 | 5.2:+77100539 | MS.gene48048:CDS |
| TTCGTGCCAAATCCAAATTC+TGG | 0.381119 | 5.2:+77099133 | MS.gene48048:CDS |
| TCCCGGCTAATCTGTGCAAA+AGG | 0.396699 | 5.2:+77100720 | MS.gene48048:CDS |
| AATTCCATAGTTCTTAATCT+TGG | 0.403701 | 5.2:-77100543 | None:intergenic |
| ATTCACTGAATCACATAAAC+AGG | 0.404006 | 5.2:-77100853 | None:intergenic |
| TGGTGGCTGTCTTAATGATC+TGG | 0.405710 | 5.2:-77100697 | None:intergenic |
| AGCTTCATACGATAAATCTT+AGG | 0.433968 | 5.2:-77099093 | None:intergenic |
| GGATTTGGCACGAACCTCAT+TGG | 0.442665 | 5.2:-77099124 | None:intergenic |
| TACCGTGATACTACTCTAAA+CGG | 0.448863 | 5.2:+77100614 | MS.gene48048:CDS |
| TTTCTTAAGGAAGTTGAAGA+AGG | 0.460521 | 5.2:+77099267 | MS.gene48048:CDS |
| CTCTGGTGTACAAGAAGATT+AGG | 0.461451 | 5.2:+77100783 | MS.gene48048:CDS |
| ATTGTTGTAGGTATTTCTTA+AGG | 0.471637 | 5.2:+77099254 | MS.gene48048:intron |
| CTGAATCACATAAACAGGTT+GGG | 0.486125 | 5.2:-77100848 | None:intergenic |
| CCCTTCCGACAACCTGGTAC+TGG | 0.493497 | 5.2:-77099044 | None:intergenic |
| TGGCATCTCGTCATAGGGTC+AGG | 0.499078 | 5.2:+77100663 | MS.gene48048:CDS |
| TTGCGTTATCAGAGTCGTAC+TGG | 0.505845 | 5.2:+77100569 | MS.gene48048:CDS |
| GGAGACAATGTACAACGAAA+TGG | 0.522780 | 5.2:+77100643 | MS.gene48048:CDS |
| AAGGGCTCTTCCCACCGAAA+AGG | 0.526516 | 5.2:+77099062 | MS.gene48048:CDS |
| TTTCACCAGTACCAGGTTGT+CGG | 0.538716 | 5.2:+77099039 | MS.gene48048:CDS |
| CCCGGCTAATCTGTGCAAAA+GGG | 0.540578 | 5.2:+77100721 | MS.gene48048:CDS |
| CGAAATGGCATCTCGTCATA+GGG | 0.541059 | 5.2:+77100658 | MS.gene48048:CDS |
| CCATAGTTCTTAATCTTGGT+AGG | 0.548600 | 5.2:-77100539 | None:intergenic |
| GAAACAGTTTCACCAGTACC+AGG | 0.549157 | 5.2:+77099032 | MS.gene48048:intron |
| TTCCAAAATCAAGTTCCCTC+TGG | 0.549470 | 5.2:+77100766 | MS.gene48048:CDS |
| AAGAAGGTTAAGAAAAGCAA+TGG | 0.552641 | 5.2:+77099283 | MS.gene48048:CDS |
| CCAGTACCAGGTTGTCGGAA+GGG | 0.555213 | 5.2:+77099044 | MS.gene48048:CDS |
| ACCAGTACCAGGTTGTCGGA+AGG | 0.560011 | 5.2:+77099043 | MS.gene48048:CDS |
| ACTGAATCACATAAACAGGT+TGG | 0.563649 | 5.2:-77100849 | None:intergenic |
| GTCTTAATGATCTGGATGCA+AGG | 0.568738 | 5.2:-77100689 | None:intergenic |
| TTTGCACAGATTAGCCGGGA+TGG | 0.581078 | 5.2:-77100717 | None:intergenic |
| GCACAGATTAGCCGGGATGG+TGG | 0.585618 | 5.2:-77100714 | None:intergenic |
| GAAGAGCCCTTCCGACAACC+TGG | 0.589985 | 5.2:-77099050 | None:intergenic |
| CATTAAGACAGCCACCATCC+CGG | 0.598852 | 5.2:+77100703 | MS.gene48048:CDS |
| AGAAGATTAGGCCACCAACT+AGG | 0.603627 | 5.2:+77100795 | MS.gene48048:CDS |
| TGGTTATCACAATATGTACA+AGG | 0.613559 | 5.2:+77100589 | MS.gene48048:CDS |
| GAAGCTTTGGGCAACCAATG+AGG | 0.631227 | 5.2:+77099110 | MS.gene48048:CDS |
| CTAATCTTCTTGTACACCAG+AGG | 0.631597 | 5.2:-77100782 | None:intergenic |
| TAATCTTCTTGTACACCAGA+GGG | 0.642722 | 5.2:-77100781 | None:intergenic |
| TACTACTCTAAACGGTGCTG+TGG | 0.650976 | 5.2:+77100622 | MS.gene48048:CDS |
| CACCGTTTAGAGTAGTATCA+CGG | 0.660256 | 5.2:-77100616 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAATGAAGGA+AGG | - | chr5.2:77098972-77098991 | None:intergenic | 15.0% |
| !! | CACAAAAAAAAAAAAAATGA+AGG | - | chr5.2:77098976-77098995 | None:intergenic | 15.0% |
| !! | TTAATAATGTTAATTGTTGT+AGG | + | chr5.2:77099242-77099261 | MS.gene48048:intron | 15.0% |
| !!! | GTAAATAAGCTTTTTTAATA+TGG | - | chr5.2:77099832-77099851 | None:intergenic | 15.0% |
| !!! | TTTCAAAGAAGTTTTATTTT+GGG | + | chr5.2:77099946-77099965 | MS.gene48048:intron | 15.0% |
| !!! | TTTTCAAAGAAGTTTTATTT+TGG | + | chr5.2:77099945-77099964 | MS.gene48048:intron | 15.0% |
| !! | AAAAAAGAACAGAAAAACAT+AGG | - | chr5.2:77099973-77099992 | None:intergenic | 20.0% |
| !! | AGTTGTTAATTGAAATTTGA+TGG | + | chr5.2:77099349-77099368 | MS.gene48048:intron | 20.0% |
| !! | CATTTATTCTAGTAAAAGTA+AGG | + | chr5.2:77100393-77100412 | MS.gene48048:intron | 20.0% |
| !! | GATAAAAATTGAACACAAAA+TGG | - | chr5.2:77100104-77100123 | None:intergenic | 20.0% |
| !! | TTAATTGAAATTTGATGGAA+GGG | + | chr5.2:77099354-77099373 | MS.gene48048:intron | 20.0% |
| ! | AAAAAAAAATGAAGGAAGGA+AGG | - | chr5.2:77098968-77098987 | None:intergenic | 25.0% |
| ! | AAAGATCTGCAAACAAAAAA+AGG | - | chr5.2:77100510-77100529 | None:intergenic | 25.0% |
| ! | AAGATAAGTCAATACAAACT+TGG | - | chr5.2:77099694-77099713 | None:intergenic | 25.0% |
| ! | AATCTAATGTTAAGGTGAAA+TGG | + | chr5.2:77099612-77099631 | MS.gene48048:intron | 25.0% |
| ! | AATTCCATAGTTCTTAATCT+TGG | - | chr5.2:77100546-77100565 | None:intergenic | 25.0% |
| ! | AGATTAAGAACTATGGAATT+TGG | + | chr5.2:77100546-77100565 | MS.gene48048:CDS | 25.0% |
| ! | ATCTAATGTTAAGGTGAAAT+GGG | + | chr5.2:77099613-77099632 | MS.gene48048:intron | 25.0% |
| ! | ATTGTTGTAGGTATTTCTTA+AGG | + | chr5.2:77099254-77099273 | MS.gene48048:intron | 25.0% |
| ! | CACCTTAACATTAGATTTAA+GGG | - | chr5.2:77099609-77099628 | None:intergenic | 25.0% |
| ! | GTTAATTGAAATTTGATGGA+AGG | + | chr5.2:77099353-77099372 | MS.gene48048:intron | 25.0% |
| ! | TAATAACTAAAGCTAACACA+TGG | - | chr5.2:77100443-77100462 | None:intergenic | 25.0% |
| ! | TCACCTTAACATTAGATTTA+AGG | - | chr5.2:77099610-77099629 | None:intergenic | 25.0% |
| ! | TGAAAATATATCCATGCAAA+GGG | + | chr5.2:77099661-77099680 | MS.gene48048:intron | 25.0% |
| ! | TGGGAAAAATGATGTAAAAT+TGG | + | chr5.2:77099632-77099651 | MS.gene48048:intron | 25.0% |
| ! | TTGAAAATATATCCATGCAA+AGG | + | chr5.2:77099660-77099679 | MS.gene48048:intron | 25.0% |
| !! | AAACTTCTTTGAAAAAGTGA+CGG | - | chr5.2:77099940-77099959 | None:intergenic | 25.0% |
| !! | AAGTAGTTAGTACTTTTGTT+GGG | + | chr5.2:77100124-77100143 | MS.gene48048:intron | 25.0% |
| !!! | ATTTAAGACTGATTTGGAAA+GGG | + | chr5.2:77100282-77100301 | MS.gene48048:intron | 25.0% |
| !!! | GTATTTAACTTTTATAGCAG+CGG | - | chr5.2:77100082-77100101 | None:intergenic | 25.0% |
| !!! | GTTTTGATTTAAGACTGATT+TGG | + | chr5.2:77100276-77100295 | MS.gene48048:intron | 25.0% |
| AAAGTAAGGCTAATTGAACT+TGG | + | chr5.2:77100407-77100426 | MS.gene48048:intron | 30.0% | |
| AACATAGACTTACCAGAATT+TGG | - | chr5.2:77099148-77099167 | None:intergenic | 30.0% | |
| AAGAAGGTTAAGAAAAGCAA+TGG | + | chr5.2:77099283-77099302 | MS.gene48048:CDS | 30.0% | |
| AGATTTATCGTATGAAGCTT+TGG | + | chr5.2:77099097-77099116 | MS.gene48048:CDS | 30.0% | |
| AGCTTCATACGATAAATCTT+AGG | - | chr5.2:77099096-77099115 | None:intergenic | 30.0% | |
| GATTTATCGTATGAAGCTTT+GGG | + | chr5.2:77099098-77099117 | MS.gene48048:CDS | 30.0% | |
| TAACTTCAATTGCAGTTTGT+TGG | + | chr5.2:77100466-77100485 | MS.gene48048:intron | 30.0% | |
| TATTATTGATCAGCTTGTCA+AGG | + | chr5.2:77099758-77099777 | MS.gene48048:intron | 30.0% | |
| TGGTTATCACAATATGTACA+AGG | + | chr5.2:77100589-77100608 | MS.gene48048:CDS | 30.0% | |
| TTCACATGAATCACAGTTTA+GGG | - | chr5.2:77100017-77100036 | None:intergenic | 30.0% | |
| TTCTGTTTGTGATTATTGCT+GGG | + | chr5.2:77100187-77100206 | MS.gene48048:intron | 30.0% | |
| TTTCACATGAATCACAGTTT+AGG | - | chr5.2:77100018-77100037 | None:intergenic | 30.0% | |
| TTTCTTAAGGAAGTTGAAGA+AGG | + | chr5.2:77099267-77099286 | MS.gene48048:CDS | 30.0% | |
| ! | AGTAGTTAGTACTTTTGTTG+GGG | + | chr5.2:77100125-77100144 | MS.gene48048:intron | 30.0% |
| ! | CAAGTAGTTAGTACTTTTGT+TGG | + | chr5.2:77100123-77100142 | MS.gene48048:intron | 30.0% |
| ! | CATTAAGTTGTGTAACAAAC+TGG | + | chr5.2:77099583-77099602 | MS.gene48048:intron | 30.0% |
| !! | GATTTAAGACTGATTTGGAA+AGG | + | chr5.2:77100281-77100300 | MS.gene48048:intron | 30.0% |
| ACAAAAGCTCTACTTGCAAT+CGG | - | chr5.2:77100168-77100187 | None:intergenic | 35.0% | |
| CAAAATACGCCAATTCATTC+AGG | + | chr5.2:77099873-77099892 | MS.gene48048:intron | 35.0% | |
| CCATAGTTCTTAATCTTGGT+AGG | - | chr5.2:77100542-77100561 | None:intergenic | 35.0% | |
| CCTACCAAGATTAAGAACTA+TGG | + | chr5.2:77100539-77100558 | MS.gene48048:CDS | 35.0% | |
| GAAGGAAATGAAAGGATTAG+TGG | - | chr5.2:77098950-77098969 | None:intergenic | 35.0% | |
| GACTTACCAGAATTTGGATT+TGG | - | chr5.2:77099142-77099161 | None:intergenic | 35.0% | |
| GATTCGTAGAATCACTTCTT+TGG | + | chr5.2:77099440-77099459 | MS.gene48048:intron | 35.0% | |
| GGCCCTTAAATCTAATGTTA+AGG | + | chr5.2:77099604-77099623 | MS.gene48048:intron | 35.0% | |
| GTTCTGTTTGTGATTATTGC+TGG | + | chr5.2:77100186-77100205 | MS.gene48048:intron | 35.0% | |
| TAATCTTCTTGTACACCAGA+GGG | - | chr5.2:77100784-77100803 | None:intergenic | 35.0% | |
| TACCGTGATACTACTCTAAA+CGG | + | chr5.2:77100614-77100633 | MS.gene48048:CDS | 35.0% | |
| TCAACTATCAAAGTAGTCAC+TGG | - | chr5.2:77100321-77100340 | None:intergenic | 35.0% | |
| TGTGTGTGTGAATCTTAACA+CGG | + | chr5.2:77098994-77099013 | MS.gene48048:intron | 35.0% | |
| ! | CTTAGGATGTTCATCCTTTT+CGG | - | chr5.2:77099079-77099098 | None:intergenic | 35.0% |
| ! | GAAAAGCAATGGACAAGTTT+TGG | + | chr5.2:77099294-77099313 | MS.gene48048:CDS | 35.0% |
| ! | TAGTACTTTTGTTGGGGAAA+GGG | + | chr5.2:77100131-77100150 | MS.gene48048:intron | 35.0% |
| ! | TTAGTACTTTTGTTGGGGAA+AGG | + | chr5.2:77100130-77100149 | MS.gene48048:intron | 35.0% |
| !!! | AACTTGTTTTGAGAAGTCAC+TGG | + | chr5.2:77100232-77100251 | MS.gene48048:intron | 35.0% |
| !!! | ACAAGTTTTGGCTATCAATG+AGG | + | chr5.2:77099306-77099325 | MS.gene48048:CDS | 35.0% |
| !!! | TGGCTTTGTAGGTTGTTTTT+AGG | - | chr5.2:77100823-77100842 | None:intergenic | 35.0% |
| AGGCTAATTGAACTTGGAGT+AGG | + | chr5.2:77100413-77100432 | MS.gene48048:intron | 40.0% | |
| CTAATCTTCTTGTACACCAG+AGG | - | chr5.2:77100785-77100804 | None:intergenic | 40.0% | |
| CTCTGGTGTACAAGAAGATT+AGG | + | chr5.2:77100783-77100802 | MS.gene48048:CDS | 40.0% | |
| GAAGGAAGGAAGGAAATGAA+AGG | - | chr5.2:77098958-77098977 | None:intergenic | 40.0% | |
| GGAGACAATGTACAACGAAA+TGG | + | chr5.2:77100643-77100662 | MS.gene48048:CDS | 40.0% | |
| GTCTTAATGATCTGGATGCA+AGG | - | chr5.2:77100692-77100711 | None:intergenic | 40.0% | |
| TTCCAAAATCAAGTTCCCTC+TGG | + | chr5.2:77100766-77100785 | MS.gene48048:CDS | 40.0% | |
| TTCGTGCCAAATCCAAATTC+TGG | + | chr5.2:77099133-77099152 | MS.gene48048:CDS | 40.0% | |
| ! | AAAGGATTAGTGGTAGTGCT+TGG | - | chr5.2:77098940-77098959 | None:intergenic | 40.0% |
| ! | CACCGTTTAGAGTAGTATCA+CGG | - | chr5.2:77100619-77100638 | None:intergenic | 40.0% |
| !! | CTTGGTGCGGATTTGATTTT+GGG | + | chr5.2:77099903-77099922 | MS.gene48048:intron | 40.0% |
| !!! | GTTGTTTTTAGGCTCCTAGT+TGG | - | chr5.2:77100812-77100831 | None:intergenic | 40.0% |
| AAAGCTCTACTTGCAATCGG+AGG | - | chr5.2:77100165-77100184 | None:intergenic | 45.0% | |
| ACGAAATGGCATCTCGTCAT+AGG | + | chr5.2:77100657-77100676 | MS.gene48048:CDS | 45.0% | |
| AGAAGATTAGGCCACCAACT+AGG | + | chr5.2:77100795-77100814 | MS.gene48048:CDS | 45.0% | |
| AGCATAGGGCCTGAATGAAT+TGG | - | chr5.2:77099885-77099904 | None:intergenic | 45.0% | |
| ATATCCATGCAAAGGGAGAC+AGG | + | chr5.2:77099668-77099687 | MS.gene48048:intron | 45.0% | |
| ATCAAATCCGCACCAAGCAT+AGG | - | chr5.2:77099900-77099919 | None:intergenic | 45.0% | |
| ATTCATTCAGGCCCTATGCT+TGG | + | chr5.2:77099885-77099904 | MS.gene48048:intron | 45.0% | |
| CGAAATGGCATCTCGTCATA+GGG | + | chr5.2:77100658-77100677 | MS.gene48048:CDS | 45.0% | |
| GAAACAGTTTCACCAGTACC+AGG | + | chr5.2:77099032-77099051 | MS.gene48048:intron | 45.0% | |
| TCAAATCCGCACCAAGCATA+GGG | - | chr5.2:77099899-77099918 | None:intergenic | 45.0% | |
| TGGTGGCTGTCTTAATGATC+TGG | - | chr5.2:77100700-77100719 | None:intergenic | 45.0% | |
| TTGCGTTATCAGAGTCGTAC+TGG | + | chr5.2:77100569-77100588 | MS.gene48048:CDS | 45.0% | |
| TTTCACCAGTACCAGGTTGT+CGG | + | chr5.2:77099039-77099058 | MS.gene48048:CDS | 45.0% | |
| ! | ACTTTTGTTGGGGAAAGGGA+AGG | + | chr5.2:77100135-77100154 | MS.gene48048:intron | 45.0% |
| ! | AGGATGTTCATCCTTTTCGG+TGG | - | chr5.2:77099076-77099095 | None:intergenic | 45.0% |
| ! | CACCAGAGGGAACTTGATTT+TGG | - | chr5.2:77100771-77100790 | None:intergenic | 45.0% |
| ! | CATAAACAGGTTGGGCTTCT+TGG | - | chr5.2:77100843-77100862 | None:intergenic | 45.0% |
| ! | GGATGTTCATCCTTTTCGGT+GGG | - | chr5.2:77099075-77099094 | None:intergenic | 45.0% |
| ! | TACTACTCTAAACGGTGCTG+TGG | + | chr5.2:77100622-77100641 | MS.gene48048:CDS | 45.0% |
| ! | TCCCTTTTGCACAGATTAGC+CGG | - | chr5.2:77100725-77100744 | None:intergenic | 45.0% |
| !! | GTTTTTAGGCTCCTAGTTGG+TGG | - | chr5.2:77100809-77100828 | None:intergenic | 45.0% |
| !!! | GCTTGGTGCGGATTTGATTT+TGG | + | chr5.2:77099902-77099921 | MS.gene48048:intron | 45.0% |
| CATTAAGACAGCCACCATCC+CGG | + | chr5.2:77100703-77100722 | MS.gene48048:CDS | 50.0% | |
| CCCGGCTAATCTGTGCAAAA+GGG | + | chr5.2:77100721-77100740 | MS.gene48048:CDS | 50.0% | |
| GGATTTGGCACGAACCTCAT+TGG | - | chr5.2:77099127-77099146 | None:intergenic | 50.0% | |
| TCCCGGCTAATCTGTGCAAA+AGG | + | chr5.2:77100720-77100739 | MS.gene48048:CDS | 50.0% | |
| ! | TTTGCACAGATTAGCCGGGA+TGG | - | chr5.2:77100720-77100739 | None:intergenic | 50.0% |
| !! | CCCTTTTGCACAGATTAGCC+GGG | - | chr5.2:77100724-77100743 | None:intergenic | 50.0% |
| !! | GAAGCTTTGGGCAACCAATG+AGG | + | chr5.2:77099110-77099129 | MS.gene48048:CDS | 50.0% |
| !! | GTTGGGCTTCTTGGCTTTGT+AGG | - | chr5.2:77100834-77100853 | None:intergenic | 50.0% |
| AAGGGCTCTTCCCACCGAAA+AGG | + | chr5.2:77099062-77099081 | MS.gene48048:CDS | 55.0% | |
| ACCAGTACCAGGTTGTCGGA+AGG | + | chr5.2:77099043-77099062 | MS.gene48048:CDS | 55.0% | |
| CCAGTACCAGGTTGTCGGAA+GGG | + | chr5.2:77099044-77099063 | MS.gene48048:CDS | 55.0% | |
| TGGCATCTCGTCATAGGGTC+AGG | + | chr5.2:77100663-77100682 | MS.gene48048:CDS | 55.0% | |
| TTGGCCTGTCTCCCTTTGCA+TGG | - | chr5.2:77099675-77099694 | None:intergenic | 55.0% | |
| ! | TTCAGGCCCTATGCTTGGTG+CGG | + | chr5.2:77099890-77099909 | MS.gene48048:intron | 55.0% |
| CCCTTCCGACAACCTGGTAC+TGG | - | chr5.2:77099047-77099066 | None:intergenic | 60.0% | |
| GAAGAGCCCTTCCGACAACC+TGG | - | chr5.2:77099053-77099072 | None:intergenic | 60.0% | |
| ! | GCACAGATTAGCCGGGATGG+TGG | - | chr5.2:77100717-77100736 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 77098912 | 77100865 | 77098912 | ID=MS.gene48048 |
| chr5.2 | mRNA | 77098912 | 77100865 | 77098912 | ID=MS.gene48048.t1;Parent=MS.gene48048 |
| chr5.2 | exon | 77098912 | 77098926 | 77098912 | ID=MS.gene48048.t1.exon1;Parent=MS.gene48048.t1 |
| chr5.2 | CDS | 77098912 | 77098926 | 77098912 | ID=cds.MS.gene48048.t1;Parent=MS.gene48048.t1 |
| chr5.2 | exon | 77099039 | 77099154 | 77099039 | ID=MS.gene48048.t1.exon2;Parent=MS.gene48048.t1 |
| chr5.2 | CDS | 77099039 | 77099154 | 77099039 | ID=cds.MS.gene48048.t1;Parent=MS.gene48048.t1 |
| chr5.2 | exon | 77099264 | 77099327 | 77099264 | ID=MS.gene48048.t1.exon3;Parent=MS.gene48048.t1 |
| chr5.2 | CDS | 77099264 | 77099327 | 77099264 | ID=cds.MS.gene48048.t1;Parent=MS.gene48048.t1 |
| chr5.2 | exon | 77100524 | 77100865 | 77100524 | ID=MS.gene48048.t1.exon4;Parent=MS.gene48048.t1 |
| chr5.2 | CDS | 77100524 | 77100865 | 77100524 | ID=cds.MS.gene48048.t1;Parent=MS.gene48048.t1 |
| Gene Sequence |
| Protein sequence |
