Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22178.t1 | XP_024633882.1 | 100 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 2.10E-98 | 368.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22178.t1 | P51418 | 88.8 | 178 | 20 | 0 | 1 | 178 | 1 | 178 | 3.1e-90 | 332.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22178.t1 | I3SJF6 | 100.0 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 1.5e-98 | 368.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038296 | MS.gene22178 | PPI |
| MS.gene48046 | MS.gene22178 | PPI |
| MS.gene038298 | MS.gene22178 | PPI |
| MS.gene22178 | MS.gene78387 | PPI |
| MS.gene09188 | MS.gene22178 | PPI |
| MS.gene09187 | MS.gene22178 | PPI |
| MS.gene08260 | MS.gene22178 | PPI |
| MS.gene039012 | MS.gene22178 | PPI |
| MS.gene22178 | MS.gene09046 | PPI |
| MS.gene22178 | MS.gene31095 | PPI |
| MS.gene22178 | MS.gene052057 | PPI |
| MS.gene023381 | MS.gene22178 | PPI |
| MS.gene019193 | MS.gene22178 | PPI |
| MS.gene77617 | MS.gene22178 | PPI |
| MS.gene22178 | MS.gene92155 | PPI |
| MS.gene017078 | MS.gene22178 | PPI |
| MS.gene017080 | MS.gene22178 | PPI |
| MS.gene29778 | MS.gene22178 | PPI |
| MS.gene057092 | MS.gene22178 | PPI |
| MS.gene22178 | MS.gene073967 | PPI |
| MS.gene69509 | MS.gene22178 | PPI |
| MS.gene22178 | MS.gene057092 | PPI |
| MS.gene45549 | MS.gene22178 | PPI |
| MS.gene052057 | MS.gene22178 | PPI |
| MS.gene22178 | MS.gene48048 | PPI |
| MS.gene22178 | MS.gene08259 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22178.t1 | MTR_3g046320 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 1.83e-133 | 370 |
| MS.gene22178.t1 | MTR_3g046320 | 99.425 | 174 | 1 | 0 | 5 | 178 | 3 | 176 | 8.34e-130 | 361 |
| MS.gene22178.t1 | MTR_5g091135 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene22178.t1 | MTR_5g091120 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene22178.t1 | MTR_2g098000 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene22178.t1 | MTR_2g019720 | 77.273 | 66 | 15 | 0 | 92 | 157 | 1 | 66 | 1.30e-32 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22178.t1 | AT2G34480 | 88.764 | 178 | 20 | 0 | 1 | 178 | 40 | 217 | 1.98e-120 | 339 |
| MS.gene22178.t1 | AT2G34480 | 88.764 | 178 | 20 | 0 | 1 | 178 | 1 | 178 | 2.73e-120 | 337 |
| MS.gene22178.t1 | AT1G29965 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 7.11e-118 | 331 |
| MS.gene22178.t1 | AT3G14600 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 8.30e-118 | 331 |
| MS.gene22178.t1 | AT1G29970 | 87.006 | 177 | 23 | 0 | 2 | 178 | 136 | 312 | 4.01e-114 | 327 |
Find 55 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTAAGAACTACGGAATT+TGG | 0.227031 | 3.4:+41031775 | MS.gene22178:CDS |
| TACCGCGACACTACACTAAA+TGG | 0.308319 | 3.4:+41031843 | MS.gene22178:CDS |
| TTGTCTTGAGCTTCCTGGTT+GGG | 0.316740 | 3.4:-41032037 | None:intergenic |
| GTATGTTGTCTTGAGCTTCC+TGG | 0.318485 | 3.4:-41032042 | None:intergenic |
| CTTTGGTGTTCAAGAAGATT+AGG | 0.360558 | 3.4:+41032012 | MS.gene22178:CDS |
| GACTTACCAGAACTTGGATT+TGG | 0.361331 | 3.4:-41029149 | None:intergenic |
| CTTGTACATGTTGTGATATC+CGG | 0.368635 | 3.4:-41031817 | None:intergenic |
| CTCGAAAATCAAGTTTCCTT+TGG | 0.369229 | 3.4:+41031995 | MS.gene22178:CDS |
| AATTCCGTAGTTCTTAATCT+TGG | 0.384261 | 3.4:-41031772 | None:intergenic |
| AACTTCATCCTATAGATCTT+AGG | 0.390754 | 3.4:-41029103 | None:intergenic |
| TTACATAAACATGTTGGGTT+TGG | 0.393552 | 3.4:-41032072 | None:intergenic |
| CGAAATACATACCTCATTGA+TGG | 0.398520 | 3.4:-41029547 | None:intergenic |
| ATGAACATCCTAAGATCTAT+AGG | 0.408451 | 3.4:+41029095 | MS.gene22178:CDS |
| TGTCTTGAGCTTCCTGGTTG+GGG | 0.409521 | 3.4:-41032036 | None:intergenic |
| TCCCAGCTAACCTTTGCAAA+AGG | 0.413105 | 3.4:+41031949 | MS.gene22178:CDS |
| ATCATTGACTTACCAGAACT+TGG | 0.415763 | 3.4:-41029155 | None:intergenic |
| GAGAATTACATAAACATGTT+GGG | 0.416940 | 3.4:-41032077 | None:intergenic |
| TTTCCAAATGGCCACCTTCA+AGG | 0.419208 | 3.4:+41028831 | None:intergenic |
| TTGTGGCAGTCTTGATGATC+TGG | 0.419281 | 3.4:-41031926 | None:intergenic |
| GGATTTGGCACGCACTTCAT+TGG | 0.425117 | 3.4:-41029134 | None:intergenic |
| CATTGATTGGATTACCTTGA+AGG | 0.425908 | 3.4:-41028845 | None:intergenic |
| CTTCGATACCAGAGCCGAAC+CGG | 0.434164 | 3.4:+41031798 | MS.gene22178:CDS |
| CCGTAGTTCTTAATCTTGGT+TGG | 0.442883 | 3.4:-41031768 | None:intergenic |
| TGCGTGCCAAATCCAAGTTC+TGG | 0.459519 | 3.4:+41029143 | MS.gene22178:CDS |
| TGTGATATCCGGTTCGGCTC+TGG | 0.459842 | 3.4:-41031806 | None:intergenic |
| TGAATATATGTACAATGAAA+TGG | 0.482427 | 3.4:+41031872 | MS.gene22178:CDS |
| CCCAGCTAACCTTTGCAAAA+GGG | 0.486205 | 3.4:+41031950 | MS.gene22178:CDS |
| GATCTATAGGATGAAGTTGT+GGG | 0.489458 | 3.4:+41029108 | MS.gene22178:CDS |
| TGAGAATTACATAAACATGT+TGG | 0.490122 | 3.4:-41032078 | None:intergenic |
| CTCTTCCCACAACCTGGTAC+TGG | 0.493497 | 3.4:-41029054 | None:intergenic |
| ACATGTTGTGATATCCGGTT+CGG | 0.502939 | 3.4:-41031812 | None:intergenic |
| TGGCTTCACGTCATAGAGTC+AGG | 0.506716 | 3.4:+41031892 | MS.gene22178:CDS |
| TTTGGCACGCACTTCATTGG+TGG | 0.507151 | 3.4:-41029131 | None:intergenic |
| GTTGTCTTGAGCTTCCTGGT+TGG | 0.517024 | 3.4:-41032038 | None:intergenic |
| GTATCACCAGTACCAGGTTG+TGG | 0.520361 | 3.4:+41029048 | MS.gene22178:intron |
| AGATCTATAGGATGAAGTTG+TGG | 0.528188 | 3.4:+41029107 | MS.gene22178:CDS |
| AGAAGGTTAAGAAGAGCAAT+GGG | 0.531968 | 3.4:+41029514 | MS.gene22178:CDS |
| CGGATATCACAACATGTACA+AGG | 0.534565 | 3.4:+41031818 | MS.gene22178:CDS |
| TATCACCAGTACCAGGTTGT+GGG | 0.550528 | 3.4:+41029049 | MS.gene22178:CDS |
| GGTTAAGAAGAGCAATGGGC+AGG | 0.558529 | 3.4:+41029518 | MS.gene22178:CDS |
| GCAAAGGTTAGCTGGGATTG+TGG | 0.562321 | 3.4:-41031943 | None:intergenic |
| GGATGTTCATCCTTCTCAGT+AGG | 0.562491 | 3.4:-41029082 | None:intergenic |
| GTCTTGATGATCTGGATGCA+TGG | 0.564131 | 3.4:-41031918 | None:intergenic |
| GTCTTGAGCTTCCTGGTTGG+GGG | 0.565257 | 3.4:-41032035 | None:intergenic |
| TTTCGAGTTATGGAACTGCT+TGG | 0.570105 | 3.4:-41031979 | None:intergenic |
| AAGAAGGTTAAGAAGAGCAA+TGG | 0.574791 | 3.4:+41029513 | MS.gene22178:CDS |
| GAAGAGCTCTTCCCACAACC+TGG | 0.580673 | 3.4:-41029060 | None:intergenic |
| CCAACCAAGATTAAGAACTA+CGG | 0.592484 | 3.4:+41031768 | MS.gene22178:CDS |
| AAGAGCTCTTCCTACTGAGA+AGG | 0.593469 | 3.4:+41029072 | MS.gene22178:CDS |
| CTAATCTTCTTGAACACCAA+AGG | 0.593573 | 3.4:-41032011 | None:intergenic |
| GAATCAGTATCACCAGTACC+AGG | 0.603715 | 3.4:+41029042 | MS.gene22178:intron |
| TGATTGGATTACCTTGAAGG+TGG | 0.611460 | 3.4:-41028842 | None:intergenic |
| GAAGCTCAAGACAACATACA+AGG | 0.626427 | 3.4:+41032046 | MS.gene22178:CDS |
| CACCATTTAGTGTAGTGTCG+CGG | 0.677168 | 3.4:-41031845 | None:intergenic |
| GCAGGTGCTTGCCATCAATG+AGG | 0.695053 | 3.4:+41029536 | MS.gene22178:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTATATTTTTCTGAT+TGG | + | chr3.4:41028965-41028984 | MS.gene22178:intron | 10.0% |
| !! | TATATTATTTATAGAAAACC+AGG | + | chr3.4:41030667-41030686 | MS.gene22178:intron | 15.0% |
| !!! | ACAAAGGTTATAAAATATTT+TGG | + | chr3.4:41031290-41031309 | MS.gene22178:intron | 15.0% |
| !!! | TTTTTGTTTTGAAATTTTGT+AGG | + | chr3.4:41029472-41029491 | MS.gene22178:intron | 15.0% |
| !! | AACATTAAAAAAAACGAGTT+GGG | - | chr3.4:41030743-41030762 | None:intergenic | 20.0% |
| !! | AAGCTATACATATATTGTTA+GGG | + | chr3.4:41031366-41031385 | MS.gene22178:intron | 20.0% |
| !! | AATTAAAACCTAAAACTTTG+AGG | - | chr3.4:41031696-41031715 | None:intergenic | 20.0% |
| !! | ACAAATTATGAAGGAAAAAA+TGG | - | chr3.4:41028918-41028937 | None:intergenic | 20.0% |
| !! | ACTCTATTAAAACATTTAGA+AGG | + | chr3.4:41030017-41030036 | MS.gene22178:intron | 20.0% |
| !! | ATTGAACTAACAAATTATGA+AGG | - | chr3.4:41028927-41028946 | None:intergenic | 20.0% |
| !! | CTCTATTAAAACATTTAGAA+GGG | + | chr3.4:41030018-41030037 | MS.gene22178:intron | 20.0% |
| !! | GAAAATAAAAGATGAGATTA+TGG | - | chr3.4:41028880-41028899 | None:intergenic | 20.0% |
| !! | GAAATACAACAATAAAACAA+AGG | - | chr3.4:41029633-41029652 | None:intergenic | 20.0% |
| !! | TAAGCTATACATATATTGTT+AGG | + | chr3.4:41031365-41031384 | MS.gene22178:intron | 20.0% |
| !! | TATAATTTACTCTTCTTACT+AGG | - | chr3.4:41029964-41029983 | None:intergenic | 20.0% |
| !! | TGAATATATGTACAATGAAA+TGG | + | chr3.4:41031872-41031891 | MS.gene22178:CDS | 20.0% |
| !! | TTAAACACAAACTTACAATA+GGG | + | chr3.4:41030898-41030917 | MS.gene22178:intron | 20.0% |
| !! | TTATGCAATACTCTATTTAA+CGG | - | chr3.4:41031594-41031613 | None:intergenic | 20.0% |
| !! | TTTAAACACAAACTTACAAT+AGG | + | chr3.4:41030897-41030916 | MS.gene22178:intron | 20.0% |
| !!! | ATAAACTTTTACCTTTGTAA+TGG | - | chr3.4:41030368-41030387 | None:intergenic | 20.0% |
| !!! | ATGAGAAAAATGAAATTTTC+TGG | + | chr3.4:41030642-41030661 | MS.gene22178:intron | 20.0% |
| !!! | ATGTTAAAAAGTAGTATTGA+TGG | + | chr3.4:41030386-41030405 | MS.gene22178:intron | 20.0% |
| !!! | ATTATATTTTTCTGATTGGT+TGG | + | chr3.4:41028969-41028988 | MS.gene22178:intron | 20.0% |
| !!! | GTTAAACTATACACATTTTA+CGG | + | chr3.4:41031067-41031086 | MS.gene22178:intron | 20.0% |
| !!! | TCATAATTTGTTAGTTCAAT+TGG | + | chr3.4:41028927-41028946 | MS.gene22178:intron | 20.0% |
| !!! | TGAAACATGAATTTTAACTA+AGG | + | chr3.4:41029897-41029916 | MS.gene22178:intron | 20.0% |
| !!! | TGAGAAAAATGAAATTTTCT+GGG | + | chr3.4:41030643-41030662 | MS.gene22178:intron | 20.0% |
| !!! | TGTTAAAAAGTAGTATTGAT+GGG | + | chr3.4:41030387-41030406 | MS.gene22178:intron | 20.0% |
| ! | AATAAAAGATGAGATTATGG+TGG | - | chr3.4:41028877-41028896 | None:intergenic | 25.0% |
| ! | AGAAGAGTAAATTATAGCTA+AGG | + | chr3.4:41029968-41029987 | MS.gene22178:intron | 25.0% |
| ! | AGCTATACATATATTGTTAG+GGG | + | chr3.4:41031367-41031386 | MS.gene22178:intron | 25.0% |
| ! | AGGTAAATTATATCGAAGTT+TGG | + | chr3.4:41031396-41031415 | MS.gene22178:intron | 25.0% |
| ! | ATCAGTCATTTAACTAAGTA+CGG | - | chr3.4:41030952-41030971 | None:intergenic | 25.0% |
| ! | GAACATTAAAAAAAACGAGT+TGG | - | chr3.4:41030744-41030763 | None:intergenic | 25.0% |
| ! | GAATCATGCATCAAAAATTT+AGG | + | chr3.4:41031460-41031479 | MS.gene22178:intron | 25.0% |
| !! | ATTACAATTTTACCCTTAAG+TGG | - | chr3.4:41030171-41030190 | None:intergenic | 25.0% |
| !! | GAAAACGAAAACAAAGTATT+TGG | + | chr3.4:41030474-41030493 | MS.gene22178:intron | 25.0% |
| !! | TTACAATTTTACCCTTAAGT+GGG | - | chr3.4:41030170-41030189 | None:intergenic | 25.0% |
| !! | TTTGCATTGTTCTTGTTTAA+TGG | + | chr3.4:41029222-41029241 | MS.gene22178:intron | 25.0% |
| !!! | AACATGAATTTTAACTAAGG+TGG | + | chr3.4:41029900-41029919 | MS.gene22178:intron | 25.0% |
| !!! | AATCAATTTTTTATGTCCTC+TGG | + | chr3.4:41031330-41031349 | MS.gene22178:intron | 25.0% |
| !!! | CTGATATTTTCTTTGATTTG+AGG | - | chr3.4:41031527-41031546 | None:intergenic | 25.0% |
| !!! | TAAGATGGCAAAATTTTAAC+TGG | + | chr3.4:41029724-41029743 | MS.gene22178:intron | 25.0% |
| AAAAAACAAAATGCGATCAC+CGG | - | chr3.4:41029457-41029476 | None:intergenic | 30.0% | |
| AACTTCATCCTATAGATCTT+AGG | - | chr3.4:41029106-41029125 | None:intergenic | 30.0% | |
| AAGTGATTGAAAACACGTTT+AGG | + | chr3.4:41030534-41030553 | MS.gene22178:intron | 30.0% | |
| AATTCCGTAGTTCTTAATCT+TGG | - | chr3.4:41031775-41031794 | None:intergenic | 30.0% | |
| ACAATAAAACAAAGGCTTCA+TGG | - | chr3.4:41029625-41029644 | None:intergenic | 30.0% | |
| AGAAAACGAAACAGAGTTAT+GGG | + | chr3.4:41030443-41030462 | MS.gene22178:intron | 30.0% | |
| AGATTAAGAACTACGGAATT+TGG | + | chr3.4:41031775-41031794 | MS.gene22178:CDS | 30.0% | |
| ATGAACATCCTAAGATCTAT+AGG | + | chr3.4:41029095-41029114 | MS.gene22178:CDS | 30.0% | |
| CAAGAATTGAGAAAAATGCA+TGG | - | chr3.4:41031006-41031025 | None:intergenic | 30.0% | |
| CTCTTGCATATTCAAGAATA+TGG | + | chr3.4:41031099-41031118 | MS.gene22178:intron | 30.0% | |
| GAGGATTCGAAAAAAAATAG+TGG | + | chr3.4:41029782-41029801 | MS.gene22178:intron | 30.0% | |
| GATTCTCTGTTGTTAAACAT+TGG | + | chr3.4:41030969-41030988 | MS.gene22178:intron | 30.0% | |
| GCAAAAACACAAAACATCAT+TGG | - | chr3.4:41029350-41029369 | None:intergenic | 30.0% | |
| GTTTCAATTGCAGAAAATAG+CGG | - | chr3.4:41029883-41029902 | None:intergenic | 30.0% | |
| TATATCGAAGTTTGGACATA+GGG | + | chr3.4:41031404-41031423 | MS.gene22178:intron | 30.0% | |
| TTACATAAACATGTTGGGTT+TGG | - | chr3.4:41032075-41032094 | None:intergenic | 30.0% | |
| TTAGTACCAAAGAATACAGA+AGG | - | chr3.4:41031144-41031163 | None:intergenic | 30.0% | |
| TTATATCGAAGTTTGGACAT+AGG | + | chr3.4:41031403-41031422 | MS.gene22178:intron | 30.0% | |
| TTCTGTATTCTTTGGTACTA+AGG | + | chr3.4:41031143-41031162 | MS.gene22178:intron | 30.0% | |
| TTGTAAAATTGCAGCACAAT+AGG | + | chr3.4:41029830-41029849 | MS.gene22178:intron | 30.0% | |
| TTGTTCATGAAAAGAGTTAC+CGG | + | chr3.4:41029435-41029454 | MS.gene22178:intron | 30.0% | |
| ! | AAACTTACAATAGGGCATTA+TGG | + | chr3.4:41030906-41030925 | MS.gene22178:intron | 30.0% |
| ! | AAGAAACTGTAGAACTTGTT+AGG | + | chr3.4:41031252-41031271 | MS.gene22178:intron | 30.0% |
| ! | CAAAGTATTTGGTTGAAAAC+AGG | + | chr3.4:41030485-41030504 | MS.gene22178:intron | 30.0% |
| ! | CATTTTTCTCAATTCTTGTC+AGG | + | chr3.4:41031008-41031027 | MS.gene22178:intron | 30.0% |
| ! | GTAAGTTTGTGTTTAAAGCA+AGG | - | chr3.4:41030894-41030913 | None:intergenic | 30.0% |
| ! | TTTGTTCTGTTGATTAGTTC+TGG | + | chr3.4:41029255-41029274 | MS.gene22178:intron | 30.0% |
| !! | AGAAACTGTAGAACTTGTTA+GGG | + | chr3.4:41031253-41031272 | MS.gene22178:intron | 30.0% |
| !! | GTTCTAGTTTGTCTAATAGT+GGG | - | chr3.4:41031652-41031671 | None:intergenic | 30.0% |
| !! | GTTTCTATGGATTGTCTTTT+GGG | - | chr3.4:41030339-41030358 | None:intergenic | 30.0% |
| !! | TGTTTCTATGGATTGTCTTT+TGG | - | chr3.4:41030340-41030359 | None:intergenic | 30.0% |
| !! | TGTTTTTGCATTGCTCTTTT+TGG | + | chr3.4:41029361-41029380 | MS.gene22178:intron | 30.0% |
| !!! | ATCGTTTTTTCCATGTTTGT+TGG | - | chr3.4:41030789-41030808 | None:intergenic | 30.0% |
| !!! | CGTTTTTTCGATTGTTGTTT+TGG | + | chr3.4:41029015-41029034 | MS.gene22178:intron | 30.0% |
| !!! | GAAACTTGATTTTCGAGTTA+TGG | - | chr3.4:41031992-41032011 | None:intergenic | 30.0% |
| !!! | GAATTTTAACTAAGGTGGTT+TGG | + | chr3.4:41029905-41029924 | MS.gene22178:intron | 30.0% |
| !!! | TTTTTTAATGTTCGTGCATC+AGG | + | chr3.4:41030751-41030770 | MS.gene22178:intron | 30.0% |
| !!! | TTTTTTGAGAAAGCTGAAGA+AGG | + | chr3.4:41029497-41029516 | MS.gene22178:CDS | 30.0% |
| AACATCTGCGATGAATAAGA+TGG | + | chr3.4:41029709-41029728 | MS.gene22178:intron | 35.0% | |
| AAGAAGGTTAAGAAGAGCAA+TGG | + | chr3.4:41029513-41029532 | MS.gene22178:CDS | 35.0% | |
| AAGAGAACGAAACAGAGTAA+TGG | + | chr3.4:41030414-41030433 | MS.gene22178:intron | 35.0% | |
| ACAATAGGATTGCTATGTAG+TGG | + | chr3.4:41029845-41029864 | MS.gene22178:intron | 35.0% | |
| ACGAAACAGAGTAATGGTTA+TGG | + | chr3.4:41030420-41030439 | MS.gene22178:intron | 35.0% | |
| AGAAGGTTAAGAAGAGCAAT+GGG | + | chr3.4:41029514-41029533 | MS.gene22178:CDS | 35.0% | |
| AGATCTATAGGATGAAGTTG+TGG | + | chr3.4:41029107-41029126 | MS.gene22178:CDS | 35.0% | |
| ATTGAAAACACGTTTAGGTG+AGG | + | chr3.4:41030539-41030558 | MS.gene22178:intron | 35.0% | |
| ATTTAGGAGTAAGTCACTGT+TGG | + | chr3.4:41031476-41031495 | MS.gene22178:intron | 35.0% | |
| CCAACCAAGATTAAGAACTA+CGG | + | chr3.4:41031768-41031787 | MS.gene22178:CDS | 35.0% | |
| CGAAATACATACCTCATTGA+TGG | - | chr3.4:41029550-41029569 | None:intergenic | 35.0% | |
| CTAATCTTCTTGAACACCAA+AGG | - | chr3.4:41032014-41032033 | None:intergenic | 35.0% | |
| CTCGAAAATCAAGTTTCCTT+TGG | + | chr3.4:41031995-41032014 | MS.gene22178:CDS | 35.0% | |
| CTTGTACATGTTGTGATATC+CGG | - | chr3.4:41031820-41031839 | None:intergenic | 35.0% | |
| GAAACAACATGCCATTACAA+AGG | + | chr3.4:41030354-41030373 | MS.gene22178:intron | 35.0% | |
| GAGAAAACGAAACAGAGTTA+TGG | + | chr3.4:41030442-41030461 | MS.gene22178:intron | 35.0% | |
| GATCTATAGGATGAAGTTGT+GGG | + | chr3.4:41029108-41029127 | MS.gene22178:CDS | 35.0% | |
| GGAAAAAACGATTCAGAACA+AGG | + | chr3.4:41030797-41030816 | MS.gene22178:intron | 35.0% | |
| GTTGGAGAGTTTGTAATGAT+GGG | + | chr3.4:41028987-41029006 | MS.gene22178:intron | 35.0% | |
| TATATTGTTAGGGGTCATTG+AGG | + | chr3.4:41031376-41031395 | MS.gene22178:intron | 35.0% | |
| TCCTAACATGCTGGTATTAA+GGG | - | chr3.4:41031201-41031220 | None:intergenic | 35.0% | |
| TTGAAAACACGTTTAGGTGA+GGG | + | chr3.4:41030540-41030559 | MS.gene22178:intron | 35.0% | |
| TTTAGGAGTAAGTCACTGTT+GGG | + | chr3.4:41031477-41031496 | MS.gene22178:intron | 35.0% | |
| TTTGCAAATGTTGCTCGTAA+TGG | + | chr3.4:41029654-41029673 | MS.gene22178:intron | 35.0% | |
| TTTGGATGGGATAAACATGT+TGG | + | chr3.4:41029379-41029398 | MS.gene22178:intron | 35.0% | |
| ! | ATGGAACATGATAGAGTACT+TGG | + | chr3.4:41031118-41031137 | MS.gene22178:intron | 35.0% |
| ! | CATTGATTGGATTACCTTGA+AGG | - | chr3.4:41028848-41028867 | None:intergenic | 35.0% |
| ! | GATTGCTATGTAGTGGAATT+TGG | + | chr3.4:41029852-41029871 | MS.gene22178:intron | 35.0% |
| ! | TTCTTTGGTACTAAGGTATC+AGG | + | chr3.4:41031150-41031169 | MS.gene22178:intron | 35.0% |
| ! | TTGCATTGCTCTTTTTGGAT+GGG | + | chr3.4:41029366-41029385 | MS.gene22178:intron | 35.0% |
| ! | TTTGCATTGCTCTTTTTGGA+TGG | + | chr3.4:41029365-41029384 | MS.gene22178:intron | 35.0% |
| !! | ATCATTGACTTACCAGAACT+TGG | - | chr3.4:41029158-41029177 | None:intergenic | 35.0% |
| !! | CGTTCTAGTTTGTCTAATAG+TGG | - | chr3.4:41031653-41031672 | None:intergenic | 35.0% |
| !! | CTTTGGTGTTCAAGAAGATT+AGG | + | chr3.4:41032012-41032031 | MS.gene22178:CDS | 35.0% |
| !! | GTAATGGCATGTTGTTTCTA+TGG | - | chr3.4:41030352-41030371 | None:intergenic | 35.0% |
| !! | TCCTGACTACATTGGTTTAA+AGG | - | chr3.4:41030064-41030083 | None:intergenic | 35.0% |
| !! | TTGTCTAATAGTGGGTATAG+CGG | - | chr3.4:41031644-41031663 | None:intergenic | 35.0% |
| !! | TTTAGCTCACTTCCTTTTTC+CGG | - | chr3.4:41030511-41030530 | None:intergenic | 35.0% |
| !!! | GATGGCAAAATTTTAACTGG+TGG | + | chr3.4:41029727-41029746 | MS.gene22178:intron | 35.0% |
| !!! | TTTTTTCCATGTTTGTTGGC+AGG | - | chr3.4:41030785-41030804 | None:intergenic | 35.0% |
| AATTCGCCGGAAAAGATTCA+TGG | + | chr3.4:41030585-41030604 | MS.gene22178:intron | 40.0% | |
| ACATGTTGTGATATCCGGTT+CGG | - | chr3.4:41031815-41031834 | None:intergenic | 40.0% | |
| ACGAAACAGAGTTATGGGTA+TGG | + | chr3.4:41030448-41030467 | MS.gene22178:intron | 40.0% | |
| CCGTAGTTCTTAATCTTGGT+TGG | - | chr3.4:41031771-41031790 | None:intergenic | 40.0% | |
| CCTAACATGCTGGTATTAAG+GGG | - | chr3.4:41031200-41031219 | None:intergenic | 40.0% | |
| CGGATATCACAACATGTACA+AGG | + | chr3.4:41031818-41031837 | MS.gene22178:CDS | 40.0% | |
| GAAGCTCAAGACAACATACA+AGG | + | chr3.4:41032046-41032065 | MS.gene22178:CDS | 40.0% | |
| GACTTACCAGAACTTGGATT+TGG | - | chr3.4:41029152-41029171 | None:intergenic | 40.0% | |
| GCCTTTAAACCAATGTAGTC+AGG | + | chr3.4:41030060-41030079 | MS.gene22178:intron | 40.0% | |
| GGAAAAAGGAAGTGAGCTAA+AGG | + | chr3.4:41030510-41030529 | MS.gene22178:intron | 40.0% | |
| GGAGGAAGATTTAAGCACAA+AGG | + | chr3.4:41031274-41031293 | MS.gene22178:intron | 40.0% | |
| GGTTGGAGAGTTTGTAATGA+TGG | + | chr3.4:41028986-41029005 | MS.gene22178:intron | 40.0% | |
| GTATTTGGTTGAAAACAGGC+CGG | + | chr3.4:41030489-41030508 | MS.gene22178:intron | 40.0% | |
| GTCCTAACATGCTGGTATTA+AGG | - | chr3.4:41031202-41031221 | None:intergenic | 40.0% | |
| GTTCGTAAGAACCCACTTAA+GGG | + | chr3.4:41030156-41030175 | MS.gene22178:intron | 40.0% | |
| GTTGCTCGTAATGGTAAGAT+AGG | + | chr3.4:41029663-41029682 | MS.gene22178:intron | 40.0% | |
| TGATTGGATTACCTTGAAGG+TGG | - | chr3.4:41028845-41028864 | None:intergenic | 40.0% | |
| ! | ACTTGGCCTTCTGTATTCTT+TGG | + | chr3.4:41031135-41031154 | MS.gene22178:intron | 40.0% |
| ! | ATGGTGGAAGAGACATTGAT+TGG | - | chr3.4:41028861-41028880 | None:intergenic | 40.0% |
| ! | GTGTTTAAAGCAAGGTAGTC+AGG | - | chr3.4:41030886-41030905 | None:intergenic | 40.0% |
| ! | GTTCTCAGCCTCAAAGTTTT+AGG | + | chr3.4:41031685-41031704 | MS.gene22178:intron | 40.0% |
| !! | AACTGTAGAACTTGTTAGGG+AGG | + | chr3.4:41031256-41031275 | MS.gene22178:intron | 40.0% |
| !! | TAGCCCAAACCAATTTTGAC+AGG | + | chr3.4:41030717-41030736 | MS.gene22178:intron | 40.0% |
| !! | TTTCGAGTTATGGAACTGCT+TGG | - | chr3.4:41031982-41032001 | None:intergenic | 40.0% |
| AACAAGGTCGAGGCATGATT+GGG | + | chr3.4:41030813-41030832 | MS.gene22178:intron | 45.0% | |
| AACGATTCAGAACAAGGTCG+AGG | + | chr3.4:41030803-41030822 | MS.gene22178:intron | 45.0% | |
| AAGACTTGTAGAAGGGCAGA+AGG | + | chr3.4:41029938-41029957 | MS.gene22178:intron | 45.0% | |
| AAGAGCTCTTCCTACTGAGA+AGG | + | chr3.4:41029072-41029091 | MS.gene22178:CDS | 45.0% | |
| ACCAGCATGTTAGGACTAGA+CGG | + | chr3.4:41031206-41031225 | MS.gene22178:intron | 45.0% | |
| ACCTAAACCTAGCACACGAA+CGG | - | chr3.4:41030614-41030633 | None:intergenic | 45.0% | |
| ACGTGGAGAAGACTTGTAGA+AGG | + | chr3.4:41029930-41029949 | MS.gene22178:intron | 45.0% | |
| AGTTCCTACGTAGGTTCGAT+TGG | + | chr3.4:41030087-41030106 | MS.gene22178:intron | 45.0% | |
| ATCGAAGTTTGGACATAGGG+TGG | + | chr3.4:41031407-41031426 | MS.gene22178:intron | 45.0% | |
| CACCATTTAGTGTAGTGTCG+CGG | - | chr3.4:41031848-41031867 | None:intergenic | 45.0% | |
| CCCAGCTAACCTTTGCAAAA+GGG | + | chr3.4:41031950-41031969 | MS.gene22178:CDS | 45.0% | |
| CCCCTTAATACCAGCATGTT+AGG | + | chr3.4:41031197-41031216 | MS.gene22178:intron | 45.0% | |
| CGTGGAGAAGACTTGTAGAA+GGG | + | chr3.4:41029931-41029950 | MS.gene22178:intron | 45.0% | |
| CTTAAACATCTGCGATCCAG+AGG | - | chr3.4:41031349-41031368 | None:intergenic | 45.0% | |
| CTTGTCAGGAATTCGACTCA+GGG | + | chr3.4:41031022-41031041 | MS.gene22178:intron | 45.0% | |
| GAACTCGTTCCTGACTACAT+TGG | - | chr3.4:41030072-41030091 | None:intergenic | 45.0% | |
| GAATCAGTATCACCAGTACC+AGG | + | chr3.4:41029042-41029061 | MS.gene22178:intron | 45.0% | |
| GCTACAACGCTATTGCATAG+AGG | + | chr3.4:41029763-41029782 | MS.gene22178:intron | 45.0% | |
| GGATGTTCATCCTTCTCAGT+AGG | - | chr3.4:41029085-41029104 | None:intergenic | 45.0% | |
| GGTAGGGTCAAAAGATAACC+TGG | - | chr3.4:41030688-41030707 | None:intergenic | 45.0% | |
| GGTTCGTAAGAACCCACTTA+AGG | + | chr3.4:41030155-41030174 | MS.gene22178:intron | 45.0% | |
| GTATGTTGTCTTGAGCTTCC+TGG | - | chr3.4:41032045-41032064 | None:intergenic | 45.0% | |
| GTGTAGGAACGTAAACACGA+GGG | + | chr3.4:41030113-41030132 | MS.gene22178:intron | 45.0% | |
| GTTGAAAACAGGCCGGAAAA+AGG | + | chr3.4:41030496-41030515 | MS.gene22178:intron | 45.0% | |
| TAAACACGAGGGACGTAACA+CGG | + | chr3.4:41030124-41030143 | MS.gene22178:intron | 45.0% | |
| TACCGCGACACTACACTAAA+TGG | + | chr3.4:41031843-41031862 | MS.gene22178:CDS | 45.0% | |
| TATCACCAGTACCAGGTTGT+GGG | + | chr3.4:41029049-41029068 | MS.gene22178:CDS | 45.0% | |
| TCCCAGCTAACCTTTGCAAA+AGG | + | chr3.4:41031949-41031968 | MS.gene22178:CDS | 45.0% | |
| TCGTGTTTACGTTCCTACAC+CGG | - | chr3.4:41030113-41030132 | None:intergenic | 45.0% | |
| TCTTGTCAGGAATTCGACTC+AGG | + | chr3.4:41031021-41031040 | MS.gene22178:intron | 45.0% | |
| TGGGCCTGTCAAAATTGGTT+TGG | - | chr3.4:41030724-41030743 | None:intergenic | 45.0% | |
| TTGTCTTGAGCTTCCTGGTT+GGG | - | chr3.4:41032040-41032059 | None:intergenic | 45.0% | |
| ! | ACTAAGGTGGTTTGGATACG+TGG | + | chr3.4:41029913-41029932 | MS.gene22178:intron | 45.0% |
| ! | GGGCCTGTCAAAATTGGTTT+GGG | - | chr3.4:41030723-41030742 | None:intergenic | 45.0% |
| ! | GGTTATCTTTTGACCCTACC+CGG | + | chr3.4:41030688-41030707 | MS.gene22178:intron | 45.0% |
| ! | GTCTTGATGATCTGGATGCA+TGG | - | chr3.4:41031921-41031940 | None:intergenic | 45.0% |
| ! | TCCCTTTTGCAAAGGTTAGC+TGG | - | chr3.4:41031954-41031973 | None:intergenic | 45.0% |
| ! | TTGTGGCAGTCTTGATGATC+TGG | - | chr3.4:41031929-41031948 | None:intergenic | 45.0% |
| !! | AATAGTGGGTATAGCGGTAG+TGG | - | chr3.4:41031638-41031657 | None:intergenic | 45.0% |
| !! | CCCTTTTGCAAAGGTTAGCT+GGG | - | chr3.4:41031953-41031972 | None:intergenic | 45.0% |
| ACCGTTCGTGTGCTAGGTTT+AGG | + | chr3.4:41030610-41030629 | MS.gene22178:intron | 50.0% | |
| CTCGTTCCTGCCAACAAACA+TGG | + | chr3.4:41030776-41030795 | MS.gene22178:intron | 50.0% | |
| GAACAAGGTCGAGGCATGAT+TGG | + | chr3.4:41030812-41030831 | MS.gene22178:intron | 50.0% | |
| GGACGTAACACGGTTCGTAA+CGG | + | chr3.4:41030134-41030153 | MS.gene22178:intron | 50.0% | |
| GGATTTGGCACGCACTTCAT+TGG | - | chr3.4:41029137-41029156 | None:intergenic | 50.0% | |
| GGTGTAGGAACGTAAACACG+AGG | + | chr3.4:41030112-41030131 | MS.gene22178:intron | 50.0% | |
| GGTTAAGAAGAGCAATGGGC+AGG | + | chr3.4:41029518-41029537 | MS.gene22178:CDS | 50.0% | |
| GTATCACCAGTACCAGGTTG+TGG | + | chr3.4:41029048-41029067 | MS.gene22178:intron | 50.0% | |
| GTTGTCTTGAGCTTCCTGGT+TGG | - | chr3.4:41032041-41032060 | None:intergenic | 50.0% | |
| TAAACCTAGCACACGAACGG+TGG | - | chr3.4:41030611-41030630 | None:intergenic | 50.0% | |
| TCAGGAACGAGTTCCTACGT+AGG | + | chr3.4:41030078-41030097 | MS.gene22178:intron | 50.0% | |
| TCGTGTGCTAGGTTTAGGTG+AGG | + | chr3.4:41030615-41030634 | MS.gene22178:intron | 50.0% | |
| TGAGGGTAGAGAGAGAACGA+CGG | + | chr3.4:41030557-41030576 | MS.gene22178:intron | 50.0% | |
| TGCGTGCCAAATCCAAGTTC+TGG | + | chr3.4:41029143-41029162 | MS.gene22178:CDS | 50.0% | |
| TGGCTTCACGTCATAGAGTC+AGG | + | chr3.4:41031892-41031911 | MS.gene22178:CDS | 50.0% | |
| TGTCTTGAGCTTCCTGGTTG+GGG | - | chr3.4:41032039-41032058 | None:intergenic | 50.0% | |
| TTTGGCACGCACTTCATTGG+TGG | - | chr3.4:41029134-41029153 | None:intergenic | 50.0% | |
| ! | CGAGTTGGGCCTGTCAAAAT+TGG | - | chr3.4:41030729-41030748 | None:intergenic | 50.0% |
| ! | CGGTGGCCATGAATCTTTTC+CGG | - | chr3.4:41030594-41030613 | None:intergenic | 50.0% |
| ! | GCAAAGGTTAGCTGGGATTG+TGG | - | chr3.4:41031946-41031965 | None:intergenic | 50.0% |
| ! | TCTTTTGACCCTACCCGGTT+CGG | + | chr3.4:41030693-41030712 | MS.gene22178:intron | 50.0% |
| ! | TGGTGCTCTCCCTTTTGCAA+AGG | - | chr3.4:41031962-41031981 | None:intergenic | 50.0% |
| AACGACGGCGAGAAATTCGC+CGG | + | chr3.4:41030572-41030591 | MS.gene22178:intron | 55.0% | |
| AACGGACGATCCTACGTGCT+GGG | + | chr3.4:41030853-41030872 | MS.gene22178:intron | 55.0% | |
| AGAAGATTAGGCCCCCAACC+AGG | + | chr3.4:41032024-41032043 | MS.gene22178:CDS | 55.0% | |
| CCTACGTAGGTTCGATTGGC+CGG | + | chr3.4:41030091-41030110 | MS.gene22178:intron | 55.0% | |
| CTCTTCCCACAACCTGGTAC+TGG | - | chr3.4:41029057-41029076 | None:intergenic | 55.0% | |
| CTTCGATACCAGAGCCGAAC+CGG | + | chr3.4:41031798-41031817 | MS.gene22178:CDS | 55.0% | |
| GAAGAGCTCTTCCCACAACC+TGG | - | chr3.4:41029063-41029082 | None:intergenic | 55.0% | |
| GCAGGTGCTTGCCATCAATG+AGG | + | chr3.4:41029536-41029555 | MS.gene22178:CDS | 55.0% | |
| GCATGTTAGGACTAGACGGC+TGG | + | chr3.4:41031210-41031229 | MS.gene22178:intron | 55.0% | |
| GCCGTCTAGTCCTAACATGC+TGG | - | chr3.4:41031210-41031229 | None:intergenic | 55.0% | |
| GTCGAGGCATGATTGGGTGT+GGG | + | chr3.4:41030819-41030838 | MS.gene22178:intron | 55.0% | |
| GTCTTGAGCTTCCTGGTTGG+GGG | - | chr3.4:41032038-41032057 | None:intergenic | 55.0% | |
| ! | ATTGGGTGTGGGAAGCACGT+AGG | + | chr3.4:41030830-41030849 | MS.gene22178:intron | 55.0% |
| ! | CTTTTGACCCTACCCGGTTC+GGG | + | chr3.4:41030694-41030713 | MS.gene22178:intron | 55.0% |
| ! | GTGTGGGAAGCACGTAGGAA+CGG | + | chr3.4:41030835-41030854 | MS.gene22178:intron | 55.0% |
| ! | TAGGTTCGATTGGCCGGTGT+AGG | + | chr3.4:41030097-41030116 | MS.gene22178:intron | 55.0% |
| !! | TGTGATATCCGGTTCGGCTC+TGG | - | chr3.4:41031809-41031828 | None:intergenic | 55.0% |
| !! | TTGGTTTGGGCTACCCGAAC+CGG | - | chr3.4:41030710-41030729 | None:intergenic | 55.0% |
| ATGGCCACCGTTCGTGTGCT+AGG | + | chr3.4:41030604-41030623 | MS.gene22178:intron | 60.0% | |
| CCGGCCAATCGAACCTACGT+AGG | - | chr3.4:41030094-41030113 | None:intergenic | 60.0% | |
| GAACGGACGATCCTACGTGC+TGG | + | chr3.4:41030852-41030871 | MS.gene22178:intron | 60.0% | |
| GGTCGAGGCATGATTGGGTG+TGG | + | chr3.4:41030818-41030837 | MS.gene22178:intron | 60.0% | |
| ! | TGGTTTGGGCTACCCGAACC+GGG | - | chr3.4:41030709-41030728 | None:intergenic | 60.0% |
| AGGCACGAGTCCCAGCACGT+AGG | - | chr3.4:41030866-41030885 | None:intergenic | 65.0% | |
| TGGGCTACCCGAACCGGGTA+GGG | - | chr3.4:41030704-41030723 | None:intergenic | 65.0% | |
| TTGGGCTACCCGAACCGGGT+AGG | - | chr3.4:41030705-41030724 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 41028838 | 41032094 | 41028838 | ID=MS.gene22178 |
| chr3.4 | mRNA | 41028838 | 41032094 | 41028838 | ID=MS.gene22178.t1;Parent=MS.gene22178 |
| chr3.4 | exon | 41028838 | 41028852 | 41028838 | ID=MS.gene22178.t1.exon1;Parent=MS.gene22178.t1 |
| chr3.4 | CDS | 41028838 | 41028852 | 41028838 | ID=cds.MS.gene22178.t1;Parent=MS.gene22178.t1 |
| chr3.4 | exon | 41029049 | 41029164 | 41029049 | ID=MS.gene22178.t1.exon2;Parent=MS.gene22178.t1 |
| chr3.4 | CDS | 41029049 | 41029164 | 41029049 | ID=cds.MS.gene22178.t1;Parent=MS.gene22178.t1 |
| chr3.4 | exon | 41029494 | 41029557 | 41029494 | ID=MS.gene22178.t1.exon3;Parent=MS.gene22178.t1 |
| chr3.4 | CDS | 41029494 | 41029557 | 41029494 | ID=cds.MS.gene22178.t1;Parent=MS.gene22178.t1 |
| chr3.4 | exon | 41031753 | 41032094 | 41031753 | ID=MS.gene22178.t1.exon4;Parent=MS.gene22178.t1 |
| chr3.4 | CDS | 41031753 | 41032094 | 41031753 | ID=cds.MS.gene22178.t1;Parent=MS.gene22178.t1 |
| Gene Sequence |
| Protein sequence |
