Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019193.t1 | XP_024633882.1 | 99.4 | 178 | 1 | 0 | 1 | 178 | 1 | 178 | 6.10E-98 | 366.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019193.t1 | Q9ATF5 | 89.9 | 178 | 18 | 0 | 1 | 178 | 1 | 178 | 3.1e-90 | 332.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019193.t1 | I3SJF6 | 99.4 | 178 | 1 | 0 | 1 | 178 | 1 | 178 | 4.4e-98 | 366.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017078 | MS.gene019193 | PPI |
| MS.gene019193 | MS.gene78387 | PPI |
| MS.gene019193 | MS.gene29778 | PPI |
| MS.gene69509 | MS.gene019193 | PPI |
| MS.gene038296 | MS.gene019193 | PPI |
| MS.gene019193 | MS.gene09046 | PPI |
| MS.gene019193 | MS.gene31095 | PPI |
| MS.gene09188 | MS.gene019193 | PPI |
| MS.gene019193 | MS.gene052057 | PPI |
| MS.gene019193 | MS.gene22178 | PPI |
| MS.gene09187 | MS.gene019193 | PPI |
| MS.gene08260 | MS.gene019193 | PPI |
| MS.gene019193 | MS.gene92155 | PPI |
| MS.gene48046 | MS.gene019193 | PPI |
| MS.gene019193 | MS.gene038298 | PPI |
| MS.gene039012 | MS.gene019193 | PPI |
| MS.gene019193 | MS.gene073967 | PPI |
| MS.gene019193 | MS.gene057092 | PPI |
| MS.gene019193 | MS.gene45549 | PPI |
| MS.gene019193 | MS.gene017080 | PPI |
| MS.gene023381 | MS.gene019193 | PPI |
| MS.gene019193 | MS.gene48048 | PPI |
| MS.gene019193 | MS.gene08259 | PPI |
| MS.gene77617 | MS.gene019193 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019193.t1 | MTR_3g046320 | 99.438 | 178 | 1 | 0 | 1 | 178 | 1 | 178 | 4.97e-133 | 369 |
| MS.gene019193.t1 | MTR_3g046320 | 98.851 | 174 | 2 | 0 | 5 | 178 | 3 | 176 | 2.27e-129 | 360 |
| MS.gene019193.t1 | MTR_5g091135 | 93.820 | 178 | 11 | 0 | 1 | 178 | 1 | 178 | 9.24e-125 | 348 |
| MS.gene019193.t1 | MTR_5g091120 | 93.820 | 178 | 11 | 0 | 1 | 178 | 1 | 178 | 9.24e-125 | 348 |
| MS.gene019193.t1 | MTR_2g098000 | 93.820 | 178 | 11 | 0 | 1 | 178 | 1 | 178 | 9.24e-125 | 348 |
| MS.gene019193.t1 | MTR_2g019720 | 75.758 | 66 | 16 | 0 | 92 | 157 | 1 | 66 | 3.77e-32 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019193.t1 | AT2G34480 | 88.202 | 178 | 21 | 0 | 1 | 178 | 40 | 217 | 5.38e-120 | 338 |
| MS.gene019193.t1 | AT2G34480 | 88.202 | 178 | 21 | 0 | 1 | 178 | 1 | 178 | 7.83e-120 | 336 |
| MS.gene019193.t1 | AT1G29965 | 86.517 | 178 | 24 | 0 | 1 | 178 | 1 | 178 | 1.85e-117 | 330 |
| MS.gene019193.t1 | AT3G14600 | 86.517 | 178 | 24 | 0 | 1 | 178 | 1 | 178 | 2.68e-117 | 330 |
| MS.gene019193.t1 | AT1G29970 | 86.441 | 177 | 24 | 0 | 2 | 178 | 136 | 312 | 1.11e-113 | 325 |
Find 54 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTAAGAACTACGGAATT+TGG | 0.227031 | 3.2:+38458806 | MS.gene019193:CDS |
| TACCGCGACACTACACTAAA+TGG | 0.308319 | 3.2:+38458874 | MS.gene019193:CDS |
| TTGTCTTGAGCTTCCTGGTT+GGG | 0.316740 | 3.2:-38459068 | None:intergenic |
| GTATGTTGTCTTGAGCTTCC+TGG | 0.318485 | 3.2:-38459073 | None:intergenic |
| CATTGGTGTTTAAGAAGATT+AGG | 0.359879 | 3.2:+38459043 | MS.gene019193:CDS |
| GACTTACCAGAACTTGGATT+TGG | 0.361331 | 3.2:-38456181 | None:intergenic |
| CTTGTACATGTTGTGATATC+CGG | 0.368635 | 3.2:-38458848 | None:intergenic |
| AATTCCGTAGTTCTTAATCT+TGG | 0.384261 | 3.2:-38458803 | None:intergenic |
| AACTTCATCCTATAGATCTT+AGG | 0.390754 | 3.2:-38456135 | None:intergenic |
| CGAAATACATACCTCATTGA+TGG | 0.398520 | 3.2:-38456569 | None:intergenic |
| TCCCAGCTAATCTTTGCAAA+AGG | 0.406086 | 3.2:+38458980 | MS.gene019193:CDS |
| ATGAACATCCTAAGATCTAT+AGG | 0.408451 | 3.2:+38456127 | MS.gene019193:CDS |
| TGTCTTGAGCTTCCTGGTTG+GGG | 0.409521 | 3.2:-38459067 | None:intergenic |
| ATCATTGACTTACCAGAACT+TGG | 0.415763 | 3.2:-38456187 | None:intergenic |
| GAGAATTACATAAACATGTT+GGG | 0.416940 | 3.2:-38459108 | None:intergenic |
| TTTCCAAATGGCCACCTTCA+AGG | 0.419208 | 3.2:+38455863 | None:intergenic |
| TTGTGGCAGTCTTGATGATC+TGG | 0.419281 | 3.2:-38458957 | None:intergenic |
| GGATTTGGCACGCACTTCAT+TGG | 0.425117 | 3.2:-38456166 | None:intergenic |
| CATTGATTGGATTACCTTGA+AGG | 0.425908 | 3.2:-38455877 | None:intergenic |
| CTTCGATACCAGAGCCGAAC+CGG | 0.434164 | 3.2:+38458829 | MS.gene019193:CDS |
| CCGTAGTTCTTAATCTTGGT+TGG | 0.442883 | 3.2:-38458799 | None:intergenic |
| TGCGTGCCAAATCCAAGTTC+TGG | 0.459519 | 3.2:+38456175 | MS.gene019193:CDS |
| TGTGATATCCGGTTCGGCTC+TGG | 0.459842 | 3.2:-38458837 | None:intergenic |
| TAATCTTCTTAAACACCAAT+GGG | 0.461177 | 3.2:-38459041 | None:intergenic |
| TGAATATATGTACAATGAAA+TGG | 0.482427 | 3.2:+38458903 | MS.gene019193:CDS |
| CCCAGCTAATCTTTGCAAAA+GGG | 0.489014 | 3.2:+38458981 | MS.gene019193:CDS |
| GATCTATAGGATGAAGTTGT+GGG | 0.489458 | 3.2:+38456140 | MS.gene019193:CDS |
| TGAGAATTACATAAACATGT+TGG | 0.490122 | 3.2:-38459109 | None:intergenic |
| CTCTTCCCACAACCTGGTAC+TGG | 0.493497 | 3.2:-38456086 | None:intergenic |
| ACATGTTGTGATATCCGGTT+CGG | 0.502939 | 3.2:-38458843 | None:intergenic |
| TGGCTTCACGTCATAGAGTC+AGG | 0.506716 | 3.2:+38458923 | MS.gene019193:CDS |
| TTTGGCACGCACTTCATTGG+TGG | 0.507151 | 3.2:-38456163 | None:intergenic |
| GTTGTCTTGAGCTTCCTGGT+TGG | 0.517024 | 3.2:-38459069 | None:intergenic |
| GTATCACCAGTACCAGGTTG+TGG | 0.520361 | 3.2:+38456080 | MS.gene019193:intron |
| AGATCTATAGGATGAAGTTG+TGG | 0.528188 | 3.2:+38456139 | MS.gene019193:CDS |
| CTAATCTTCTTAAACACCAA+TGG | 0.530693 | 3.2:-38459042 | None:intergenic |
| AGAAGGTTAAGAAGAGCAAT+GGG | 0.531968 | 3.2:+38456536 | MS.gene019193:CDS |
| CGGATATCACAACATGTACA+AGG | 0.534565 | 3.2:+38458849 | MS.gene019193:CDS |
| TATCACCAGTACCAGGTTGT+GGG | 0.550528 | 3.2:+38456081 | MS.gene019193:CDS |
| CTCTAAAATCAAGTTCCCAT+TGG | 0.554953 | 3.2:+38459026 | MS.gene019193:CDS |
| GGTTAAGAAGAGCAATGGGC+AGG | 0.558529 | 3.2:+38456540 | MS.gene019193:CDS |
| GGATGTTCATCCTTCTCAGT+AGG | 0.562491 | 3.2:-38456114 | None:intergenic |
| GTCTTGATGATCTGGATGCA+TGG | 0.564131 | 3.2:-38458949 | None:intergenic |
| GTCTTGAGCTTCCTGGTTGG+GGG | 0.565257 | 3.2:-38459066 | None:intergenic |
| GCAAAGATTAGCTGGGATTG+TGG | 0.567461 | 3.2:-38458974 | None:intergenic |
| AAGAAGGTTAAGAAGAGCAA+TGG | 0.574791 | 3.2:+38456535 | MS.gene019193:CDS |
| GAAGAGCTCTTCCCACAACC+TGG | 0.580673 | 3.2:-38456092 | None:intergenic |
| CCAACCAAGATTAAGAACTA+CGG | 0.592484 | 3.2:+38458799 | MS.gene019193:CDS |
| AAGAGCTCTTCCTACTGAGA+AGG | 0.593469 | 3.2:+38456104 | MS.gene019193:CDS |
| GAATCAGTATCACCAGTACC+AGG | 0.603715 | 3.2:+38456074 | MS.gene019193:intron |
| TGATTGGATTACCTTGAAGG+TGG | 0.611460 | 3.2:-38455874 | None:intergenic |
| GAAGCTCAAGACAACATACA+AGG | 0.626427 | 3.2:+38459077 | MS.gene019193:CDS |
| CACCATTTAGTGTAGTGTCG+CGG | 0.677168 | 3.2:-38458876 | None:intergenic |
| GCAGGTGCTTGCCATCAATG+AGG | 0.695053 | 3.2:+38456558 | MS.gene019193:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTATTTATAGAAAAC+CGG | + | chr3.2:38457692-38457711 | MS.gene019193:intron | 10.0% |
| !!! | AAAAATTATATTTTTCTGAT+TGG | + | chr3.2:38455997-38456016 | MS.gene019193:intron | 10.0% |
| !! | TATATTATTTATAGAAAACC+GGG | + | chr3.2:38457693-38457712 | MS.gene019193:intron | 15.0% |
| !!! | ACAAAGGTTATAAAATATTT+TGG | + | chr3.2:38458316-38458335 | MS.gene019193:intron | 15.0% |
| !!! | TTTTTGTTTTGAAATTTTGT+AGG | + | chr3.2:38456494-38456513 | MS.gene019193:intron | 15.0% |
| !! | AACGTTAAAAAAAACAAGTT+GGG | - | chr3.2:38457769-38457788 | None:intergenic | 20.0% |
| !! | AAGCTATACATATATTGTTA+GGG | + | chr3.2:38458394-38458413 | MS.gene019193:intron | 20.0% |
| !! | AATTAAAACCTAAAACTTTG+AGG | - | chr3.2:38458727-38458746 | None:intergenic | 20.0% |
| !! | ACAAATTATGAAGGAAAAAA+TGG | - | chr3.2:38455950-38455969 | None:intergenic | 20.0% |
| !! | ACTCTATTAAAACATTTAGA+AGG | + | chr3.2:38457039-38457058 | MS.gene019193:intron | 20.0% |
| !! | ATTGAACTAACAAATTATGA+AGG | - | chr3.2:38455959-38455978 | None:intergenic | 20.0% |
| !! | CTCTATTAAAACATTTAGAA+GGG | + | chr3.2:38457040-38457059 | MS.gene019193:intron | 20.0% |
| !! | GAAAATAAAAGATGAGATTA+TGG | - | chr3.2:38455912-38455931 | None:intergenic | 20.0% |
| !! | GAAATACAACAATAAAACAA+AGG | - | chr3.2:38456655-38456674 | None:intergenic | 20.0% |
| !! | TAAGCTATACATATATTGTT+AGG | + | chr3.2:38458393-38458412 | MS.gene019193:intron | 20.0% |
| !! | TATAATTTACTCTTCTTACT+AGG | - | chr3.2:38456986-38457005 | None:intergenic | 20.0% |
| !! | TGAATATATGTACAATGAAA+TGG | + | chr3.2:38458903-38458922 | MS.gene019193:CDS | 20.0% |
| !! | TTAAACACAAACTTACAATA+GGG | + | chr3.2:38457924-38457943 | MS.gene019193:intron | 20.0% |
| !! | TTTAAACACAAACTTACAAT+AGG | + | chr3.2:38457923-38457942 | MS.gene019193:intron | 20.0% |
| !!! | ATAAACTTTTACCTTTGTAA+TGG | - | chr3.2:38457394-38457413 | None:intergenic | 20.0% |
| !!! | ATGAGAAAAATGAAATTTTC+TGG | + | chr3.2:38457668-38457687 | MS.gene019193:intron | 20.0% |
| !!! | ATGTTAAAAAGTAGTATTGA+TGG | + | chr3.2:38457412-38457431 | MS.gene019193:intron | 20.0% |
| !!! | ATTATATTTTTCTGATTGGT+TGG | + | chr3.2:38456001-38456020 | MS.gene019193:intron | 20.0% |
| !!! | GTTAAACTATACACATTTTA+CGG | + | chr3.2:38458093-38458112 | MS.gene019193:intron | 20.0% |
| !!! | TCATAATTTGTTAGTTCAAT+TGG | + | chr3.2:38455959-38455978 | MS.gene019193:intron | 20.0% |
| !!! | TGAAACATGAATTTTAACTA+AGG | + | chr3.2:38456919-38456938 | MS.gene019193:intron | 20.0% |
| !!! | TGAGAAAAATGAAATTTTCT+GGG | + | chr3.2:38457669-38457688 | MS.gene019193:intron | 20.0% |
| !!! | TGTTAAAAAGTAGTATTGAT+GGG | + | chr3.2:38457413-38457432 | MS.gene019193:intron | 20.0% |
| ! | AAATGATTGAAAACACGTTT+AGG | + | chr3.2:38457560-38457579 | MS.gene019193:intron | 25.0% |
| ! | AATAAAAGATGAGATTATGG+TGG | - | chr3.2:38455909-38455928 | None:intergenic | 25.0% |
| ! | AGAAGAGTAAATTATAGCTA+AGG | + | chr3.2:38456990-38457009 | MS.gene019193:intron | 25.0% |
| ! | AGCTATACATATATTGTTAG+GGG | + | chr3.2:38458395-38458414 | MS.gene019193:intron | 25.0% |
| ! | AGGTAAATTATATCGAAGTT+TGG | + | chr3.2:38458424-38458443 | MS.gene019193:intron | 25.0% |
| ! | ATCAGTCATTTAACTAAGTA+CGG | - | chr3.2:38457978-38457997 | None:intergenic | 25.0% |
| ! | GAACGTTAAAAAAAACAAGT+TGG | - | chr3.2:38457770-38457789 | None:intergenic | 25.0% |
| ! | GAATCATGCATCAAAAATTT+AGG | + | chr3.2:38458488-38458507 | MS.gene019193:intron | 25.0% |
| ! | TAATCTTCTTAAACACCAAT+GGG | - | chr3.2:38459044-38459063 | None:intergenic | 25.0% |
| ! | TTATGCAGTACTCTATTTAA+CGG | - | chr3.2:38458622-38458641 | None:intergenic | 25.0% |
| !! | ATTACAATTTTACCCTTAAG+TGG | - | chr3.2:38457183-38457202 | None:intergenic | 25.0% |
| !! | GAAAACGAAAACAAAGTATT+TGG | + | chr3.2:38457500-38457519 | MS.gene019193:intron | 25.0% |
| !! | TTACAATTTTACCCTTAAGT+GGG | - | chr3.2:38457182-38457201 | None:intergenic | 25.0% |
| !! | TTTGCATTGTTCTTGTTTAA+TGG | + | chr3.2:38456243-38456262 | MS.gene019193:intron | 25.0% |
| !!! | AACATGAATTTTAACTAAGG+TGG | + | chr3.2:38456922-38456941 | MS.gene019193:intron | 25.0% |
| !!! | CTGATATTTTCTTTGATTTG+AGG | - | chr3.2:38458555-38458574 | None:intergenic | 25.0% |
| !!! | TAAGATGGCAAAATTTTAAC+TGG | + | chr3.2:38456746-38456765 | MS.gene019193:intron | 25.0% |
| !!! | TCAATTTTTTATATGTCCTC+TGG | + | chr3.2:38458358-38458377 | MS.gene019193:intron | 25.0% |
| AAAAAACAAAATGCGATCAC+CGG | - | chr3.2:38456479-38456498 | None:intergenic | 30.0% | |
| AACTTCATCCTATAGATCTT+AGG | - | chr3.2:38456138-38456157 | None:intergenic | 30.0% | |
| AATTCCGTAGTTCTTAATCT+TGG | - | chr3.2:38458806-38458825 | None:intergenic | 30.0% | |
| ACAATAAAACAAAGGCTTCA+TGG | - | chr3.2:38456647-38456666 | None:intergenic | 30.0% | |
| AGAAAACGAAACAGAGTTAT+GGG | + | chr3.2:38457469-38457488 | MS.gene019193:intron | 30.0% | |
| AGATTAAGAACTACGGAATT+TGG | + | chr3.2:38458806-38458825 | MS.gene019193:CDS | 30.0% | |
| ATGAACATCCTAAGATCTAT+AGG | + | chr3.2:38456127-38456146 | MS.gene019193:CDS | 30.0% | |
| CAAGAATTGAGAAAAATGCA+TGG | - | chr3.2:38458032-38458051 | None:intergenic | 30.0% | |
| CTAATCTTCTTAAACACCAA+TGG | - | chr3.2:38459045-38459064 | None:intergenic | 30.0% | |
| CTCTTGCATATTCAAGAATA+TGG | + | chr3.2:38458125-38458144 | MS.gene019193:intron | 30.0% | |
| GAGGATTCGAAAAAAAATAG+TGG | + | chr3.2:38456804-38456823 | MS.gene019193:intron | 30.0% | |
| GATTCTCTGTTGTTAAACTT+TGG | + | chr3.2:38457995-38458014 | MS.gene019193:intron | 30.0% | |
| GCAAAAACACAAAACATCAT+TGG | - | chr3.2:38456372-38456391 | None:intergenic | 30.0% | |
| GTTTCAATTGCAGAAAATAG+CGG | - | chr3.2:38456905-38456924 | None:intergenic | 30.0% | |
| TATATCGAAGTTTGGACATA+GGG | + | chr3.2:38458432-38458451 | MS.gene019193:intron | 30.0% | |
| TTATATCGAAGTTTGGACAT+AGG | + | chr3.2:38458431-38458450 | MS.gene019193:intron | 30.0% | |
| TTGTAAAATTGCAGCACAAT+AGG | + | chr3.2:38456852-38456871 | MS.gene019193:intron | 30.0% | |
| TTGTTCATGAAAAGAGTTAC+CGG | + | chr3.2:38456457-38456476 | MS.gene019193:intron | 30.0% | |
| ! | AAACTTACAATAGGGCATTA+TGG | + | chr3.2:38457932-38457951 | MS.gene019193:intron | 30.0% |
| ! | AAGAAACTGTAGAACTTGTT+AGG | + | chr3.2:38458278-38458297 | MS.gene019193:intron | 30.0% |
| ! | CAAAGTATTTGGTTGAAAAC+AGG | + | chr3.2:38457511-38457530 | MS.gene019193:intron | 30.0% |
| ! | CATTGGTGTTTAAGAAGATT+AGG | + | chr3.2:38459043-38459062 | MS.gene019193:CDS | 30.0% |
| ! | CATTTTTCTCAATTCTTGTC+AGG | + | chr3.2:38458034-38458053 | MS.gene019193:intron | 30.0% |
| ! | GTAAGTTTGTGTTTAAAGCA+AGG | - | chr3.2:38457920-38457939 | None:intergenic | 30.0% |
| ! | TTTGTTCTGTTGATTAGTTC+TGG | + | chr3.2:38456276-38456295 | MS.gene019193:intron | 30.0% |
| !! | AGAAACTGTAGAACTTGTTA+GGG | + | chr3.2:38458279-38458298 | MS.gene019193:intron | 30.0% |
| !! | GTTCTAGTTTGTCTAATAGT+GGG | - | chr3.2:38458680-38458699 | None:intergenic | 30.0% |
| !! | GTTTCTATGGATTGTCTTTT+GGG | - | chr3.2:38457365-38457384 | None:intergenic | 30.0% |
| !! | TGTTTCTATGGATTGTCTTT+TGG | - | chr3.2:38457366-38457385 | None:intergenic | 30.0% |
| !! | TGTTTTTGCATTGCTCTTTT+TGG | + | chr3.2:38456383-38456402 | MS.gene019193:intron | 30.0% |
| !!! | ATCGTTTTTTCCATGTTTGT+TGG | - | chr3.2:38457815-38457834 | None:intergenic | 30.0% |
| !!! | CGTTTTTTCGATTGTTGTTT+TGG | + | chr3.2:38456047-38456066 | MS.gene019193:intron | 30.0% |
| !!! | GAATTTTAACTAAGGTGGTT+TGG | + | chr3.2:38456927-38456946 | MS.gene019193:intron | 30.0% |
| !!! | GGAACTTGATTTTAGAGTTA+TGG | - | chr3.2:38459023-38459042 | None:intergenic | 30.0% |
| !!! | TTTTTTGAGAAAGCTGAAGA+AGG | + | chr3.2:38456519-38456538 | MS.gene019193:CDS | 30.0% |
| AACATCTGCGATGAATAAGA+TGG | + | chr3.2:38456731-38456750 | MS.gene019193:intron | 35.0% | |
| AAGAAGGTTAAGAAGAGCAA+TGG | + | chr3.2:38456535-38456554 | MS.gene019193:CDS | 35.0% | |
| AAGAGAACGAAACAGAGTAA+TGG | + | chr3.2:38457440-38457459 | MS.gene019193:intron | 35.0% | |
| ACAATAGGATTGCTATGTAG+TGG | + | chr3.2:38456867-38456886 | MS.gene019193:intron | 35.0% | |
| AGAAGGTTAAGAAGAGCAAT+GGG | + | chr3.2:38456536-38456555 | MS.gene019193:CDS | 35.0% | |
| AGAGAACGAAACAGAGTAAT+GGG | + | chr3.2:38457441-38457460 | MS.gene019193:intron | 35.0% | |
| AGATCTATAGGATGAAGTTG+TGG | + | chr3.2:38456139-38456158 | MS.gene019193:CDS | 35.0% | |
| ATTGAAAACACGTTTAGGTG+AGG | + | chr3.2:38457565-38457584 | MS.gene019193:intron | 35.0% | |
| ATTTAGGAGTAAGTCACTGT+TGG | + | chr3.2:38458504-38458523 | MS.gene019193:intron | 35.0% | |
| CCAACCAAGATTAAGAACTA+CGG | + | chr3.2:38458799-38458818 | MS.gene019193:CDS | 35.0% | |
| CGAAATACATACCTCATTGA+TGG | - | chr3.2:38456572-38456591 | None:intergenic | 35.0% | |
| CTTGTACATGTTGTGATATC+CGG | - | chr3.2:38458851-38458870 | None:intergenic | 35.0% | |
| GAAACAACATGCCATTACAA+AGG | + | chr3.2:38457380-38457399 | MS.gene019193:intron | 35.0% | |
| GAGAAAACGAAACAGAGTTA+TGG | + | chr3.2:38457468-38457487 | MS.gene019193:intron | 35.0% | |
| GATCTATAGGATGAAGTTGT+GGG | + | chr3.2:38456140-38456159 | MS.gene019193:CDS | 35.0% | |
| GGAAAAAACGATTCAGAACA+AGG | + | chr3.2:38457823-38457842 | MS.gene019193:intron | 35.0% | |
| GTTGGAGAGTTTGTAATGAT+GGG | + | chr3.2:38456019-38456038 | MS.gene019193:intron | 35.0% | |
| TATATTGTTAGGGGTCATTG+AGG | + | chr3.2:38458404-38458423 | MS.gene019193:intron | 35.0% | |
| TCAGTACCAAAGAATACAGA+AGG | - | chr3.2:38458170-38458189 | None:intergenic | 35.0% | |
| TCCTAACATGCTGGTATTAA+GGG | - | chr3.2:38458227-38458246 | None:intergenic | 35.0% | |
| TTCTGTATTCTTTGGTACTG+AGG | + | chr3.2:38458169-38458188 | MS.gene019193:intron | 35.0% | |
| TTGAAAACACGTTTAGGTGA+GGG | + | chr3.2:38457566-38457585 | MS.gene019193:intron | 35.0% | |
| TTTAGGAGTAAGTCACTGTT+GGG | + | chr3.2:38458505-38458524 | MS.gene019193:intron | 35.0% | |
| TTTGCAAATGTTGCTCGTAA+TGG | + | chr3.2:38456676-38456695 | MS.gene019193:intron | 35.0% | |
| TTTGGATGGGATAAACATGT+TGG | + | chr3.2:38456401-38456420 | MS.gene019193:intron | 35.0% | |
| ! | ATGGAACATGATAGAGTACT+TGG | + | chr3.2:38458144-38458163 | MS.gene019193:intron | 35.0% |
| ! | CATTGATTGGATTACCTTGA+AGG | - | chr3.2:38455880-38455899 | None:intergenic | 35.0% |
| ! | GATTGCTATGTAGTGGAATT+TGG | + | chr3.2:38456874-38456893 | MS.gene019193:intron | 35.0% |
| ! | TTGCATTGCTCTTTTTGGAT+GGG | + | chr3.2:38456388-38456407 | MS.gene019193:intron | 35.0% |
| ! | TTTGCATTGCTCTTTTTGGA+TGG | + | chr3.2:38456387-38456406 | MS.gene019193:intron | 35.0% |
| !! | ATCATTGACTTACCAGAACT+TGG | - | chr3.2:38456190-38456209 | None:intergenic | 35.0% |
| !! | CGTTCTAGTTTGTCTAATAG+TGG | - | chr3.2:38458681-38458700 | None:intergenic | 35.0% |
| !! | CTCTAAAATCAAGTTCCCAT+TGG | + | chr3.2:38459026-38459045 | MS.gene019193:CDS | 35.0% |
| !! | GTAATGGCATGTTGTTTCTA+TGG | - | chr3.2:38457378-38457397 | None:intergenic | 35.0% |
| !! | TCCTGACTACATTGGTTTAA+AGG | - | chr3.2:38457086-38457105 | None:intergenic | 35.0% |
| !! | TTGTCTAATAGTGGGTATAG+CGG | - | chr3.2:38458672-38458691 | None:intergenic | 35.0% |
| !! | TTTAGCTCACTTCCTTTTTC+CGG | - | chr3.2:38457537-38457556 | None:intergenic | 35.0% |
| !!! | GATGGCAAAATTTTAACTGG+TGG | + | chr3.2:38456749-38456768 | MS.gene019193:intron | 35.0% |
| !!! | TTTTTTAACGTTCGTGCATC+AGG | + | chr3.2:38457777-38457796 | MS.gene019193:intron | 35.0% |
| !!! | TTTTTTCCATGTTTGTTGGC+AGG | - | chr3.2:38457811-38457830 | None:intergenic | 35.0% |
| AATTCGCCGGAAAAGATTCA+TGG | + | chr3.2:38457611-38457630 | MS.gene019193:intron | 40.0% | |
| ACATGTTGTGATATCCGGTT+CGG | - | chr3.2:38458846-38458865 | None:intergenic | 40.0% | |
| ACGAAACAGAGTTATGGGTA+TGG | + | chr3.2:38457474-38457493 | MS.gene019193:intron | 40.0% | |
| CCCAGCTAATCTTTGCAAAA+GGG | + | chr3.2:38458981-38459000 | MS.gene019193:CDS | 40.0% | |
| CCGTAGTTCTTAATCTTGGT+TGG | - | chr3.2:38458802-38458821 | None:intergenic | 40.0% | |
| CCTAACATGCTGGTATTAAG+GGG | - | chr3.2:38458226-38458245 | None:intergenic | 40.0% | |
| CGGATATCACAACATGTACA+AGG | + | chr3.2:38458849-38458868 | MS.gene019193:CDS | 40.0% | |
| GAAGCTCAAGACAACATACA+AGG | + | chr3.2:38459077-38459096 | MS.gene019193:CDS | 40.0% | |
| GACTTACCAGAACTTGGATT+TGG | - | chr3.2:38456184-38456203 | None:intergenic | 40.0% | |
| GCCTTTAAACCAATGTAGTC+AGG | + | chr3.2:38457082-38457101 | MS.gene019193:intron | 40.0% | |
| GGAAAAAGGAAGTGAGCTAA+AGG | + | chr3.2:38457536-38457555 | MS.gene019193:intron | 40.0% | |
| GGAGGAAGATTTAAGCACAA+AGG | + | chr3.2:38458300-38458319 | MS.gene019193:intron | 40.0% | |
| GGTTGGAGAGTTTGTAATGA+TGG | + | chr3.2:38456018-38456037 | MS.gene019193:intron | 40.0% | |
| GTATTTGGTTGAAAACAGGC+CGG | + | chr3.2:38457515-38457534 | MS.gene019193:intron | 40.0% | |
| GTCCTAACATGCTGGTATTA+AGG | - | chr3.2:38458228-38458247 | None:intergenic | 40.0% | |
| GTTCGTAAGAACCCACTTAA+GGG | + | chr3.2:38457168-38457187 | MS.gene019193:intron | 40.0% | |
| GTTGCTCGTAATGGTAAGAT+AGG | + | chr3.2:38456685-38456704 | MS.gene019193:intron | 40.0% | |
| TCCCAGCTAATCTTTGCAAA+AGG | + | chr3.2:38458980-38458999 | MS.gene019193:CDS | 40.0% | |
| TGATTGGATTACCTTGAAGG+TGG | - | chr3.2:38455877-38455896 | None:intergenic | 40.0% | |
| ! | ACTTGGCCTTCTGTATTCTT+TGG | + | chr3.2:38458161-38458180 | MS.gene019193:intron | 40.0% |
| ! | ATGGTGGAAGAGACATTGAT+TGG | - | chr3.2:38455893-38455912 | None:intergenic | 40.0% |
| ! | GTGTTTAAAGCAAGGTAGTC+AGG | - | chr3.2:38457912-38457931 | None:intergenic | 40.0% |
| ! | GTTCTCAGCCTCAAAGTTTT+AGG | + | chr3.2:38458716-38458735 | MS.gene019193:intron | 40.0% |
| ! | TCCCTTTTGCAAAGATTAGC+TGG | - | chr3.2:38458985-38459004 | None:intergenic | 40.0% |
| ! | TTCTTTGGTACTGAGGTATC+AGG | + | chr3.2:38458176-38458195 | MS.gene019193:intron | 40.0% |
| !! | AACTGTAGAACTTGTTAGGG+AGG | + | chr3.2:38458282-38458301 | MS.gene019193:intron | 40.0% |
| !! | ACGAAACAGAGTAATGGGTA+TGG | + | chr3.2:38457446-38457465 | MS.gene019193:intron | 40.0% |
| !! | CCCTTTTGCAAAGATTAGCT+GGG | - | chr3.2:38458984-38459003 | None:intergenic | 40.0% |
| !! | TAGCCCAAACCAATTTTGAC+AGG | + | chr3.2:38457743-38457762 | MS.gene019193:intron | 40.0% |
| AACGATTCAGAACAAGGTCG+AGG | + | chr3.2:38457829-38457848 | MS.gene019193:intron | 45.0% | |
| AAGACTTGTAGAAGGGCAGA+AGG | + | chr3.2:38456960-38456979 | MS.gene019193:intron | 45.0% | |
| AAGAGCTCTTCCTACTGAGA+AGG | + | chr3.2:38456104-38456123 | MS.gene019193:CDS | 45.0% | |
| ACCAGCATGTTAGGACTAGA+CGG | + | chr3.2:38458232-38458251 | MS.gene019193:intron | 45.0% | |
| ACCTAAACCTAGCACACGAA+CGG | - | chr3.2:38457640-38457659 | None:intergenic | 45.0% | |
| ACGTGGAGAAGACTTGTAGA+AGG | + | chr3.2:38456952-38456971 | MS.gene019193:intron | 45.0% | |
| AGTTCCTACGTAGGTTCGAT+TGG | + | chr3.2:38457109-38457128 | MS.gene019193:intron | 45.0% | |
| ATCGAAGTTTGGACATAGGG+TGG | + | chr3.2:38458435-38458454 | MS.gene019193:intron | 45.0% | |
| CACCATTTAGTGTAGTGTCG+CGG | - | chr3.2:38458879-38458898 | None:intergenic | 45.0% | |
| CCCCTTAATACCAGCATGTT+AGG | + | chr3.2:38458223-38458242 | MS.gene019193:intron | 45.0% | |
| CGTGGAGAAGACTTGTAGAA+GGG | + | chr3.2:38456953-38456972 | MS.gene019193:intron | 45.0% | |
| CTTAAACATCTGCGATCCAG+AGG | - | chr3.2:38458377-38458396 | None:intergenic | 45.0% | |
| CTTGTCAGGAATTCGACTCA+GGG | + | chr3.2:38458048-38458067 | MS.gene019193:intron | 45.0% | |
| GAACTCGTTCCTGACTACAT+TGG | - | chr3.2:38457094-38457113 | None:intergenic | 45.0% | |
| GAATCAGTATCACCAGTACC+AGG | + | chr3.2:38456074-38456093 | MS.gene019193:intron | 45.0% | |
| GCTACAACGCTATTGCATAG+AGG | + | chr3.2:38456785-38456804 | MS.gene019193:intron | 45.0% | |
| GGATGTTCATCCTTCTCAGT+AGG | - | chr3.2:38456117-38456136 | None:intergenic | 45.0% | |
| GGTAGGGTCAAAAGATAACC+CGG | - | chr3.2:38457714-38457733 | None:intergenic | 45.0% | |
| GGTTCGTAAGAACCCACTTA+AGG | + | chr3.2:38457167-38457186 | MS.gene019193:intron | 45.0% | |
| GTATGTTGTCTTGAGCTTCC+TGG | - | chr3.2:38459076-38459095 | None:intergenic | 45.0% | |
| GTGTAGGAACGTAAACACGA+GGG | + | chr3.2:38457135-38457154 | MS.gene019193:intron | 45.0% | |
| GTTGAAAACAGGCCGGAAAA+AGG | + | chr3.2:38457522-38457541 | MS.gene019193:intron | 45.0% | |
| TAAACACGAGGGACGTAACA+CGG | + | chr3.2:38457146-38457165 | MS.gene019193:intron | 45.0% | |
| TACCGCGACACTACACTAAA+TGG | + | chr3.2:38458874-38458893 | MS.gene019193:CDS | 45.0% | |
| TATCACCAGTACCAGGTTGT+GGG | + | chr3.2:38456081-38456100 | MS.gene019193:CDS | 45.0% | |
| TCGTGTTTACGTTCCTACAC+CGG | - | chr3.2:38457135-38457154 | None:intergenic | 45.0% | |
| TCTTGTCAGGAATTCGACTC+AGG | + | chr3.2:38458047-38458066 | MS.gene019193:intron | 45.0% | |
| TGGGCCTGTCAAAATTGGTT+TGG | - | chr3.2:38457750-38457769 | None:intergenic | 45.0% | |
| TTGTCTTGAGCTTCCTGGTT+GGG | - | chr3.2:38459071-38459090 | None:intergenic | 45.0% | |
| ! | ACTAAGGTGGTTTGGATACG+TGG | + | chr3.2:38456935-38456954 | MS.gene019193:intron | 45.0% |
| ! | CAAGTTGGGCCTGTCAAAAT+TGG | - | chr3.2:38457755-38457774 | None:intergenic | 45.0% |
| ! | GCAAAGATTAGCTGGGATTG+TGG | - | chr3.2:38458977-38458996 | None:intergenic | 45.0% |
| ! | GGGCCTGTCAAAATTGGTTT+GGG | - | chr3.2:38457749-38457768 | None:intergenic | 45.0% |
| ! | GGTTATCTTTTGACCCTACC+CGG | + | chr3.2:38457714-38457733 | MS.gene019193:intron | 45.0% |
| ! | GTCTTGATGATCTGGATGCA+TGG | - | chr3.2:38458952-38458971 | None:intergenic | 45.0% |
| ! | TTGTGGCAGTCTTGATGATC+TGG | - | chr3.2:38458960-38458979 | None:intergenic | 45.0% |
| !! | AATAGTGGGTATAGCGGTAG+TGG | - | chr3.2:38458666-38458685 | None:intergenic | 45.0% |
| AACAAGGTCGAGGCACGATT+GGG | + | chr3.2:38457839-38457858 | MS.gene019193:intron | 50.0% | |
| ACCGTTCGTGTGCTAGGTTT+AGG | + | chr3.2:38457636-38457655 | MS.gene019193:intron | 50.0% | |
| CTCGTTCCTGCCAACAAACA+TGG | + | chr3.2:38457802-38457821 | MS.gene019193:intron | 50.0% | |
| GGATTTGGCACGCACTTCAT+TGG | - | chr3.2:38456169-38456188 | None:intergenic | 50.0% | |
| GGTGTAGGAACGTAAACACG+AGG | + | chr3.2:38457134-38457153 | MS.gene019193:intron | 50.0% | |
| GGTTAAGAAGAGCAATGGGC+AGG | + | chr3.2:38456540-38456559 | MS.gene019193:CDS | 50.0% | |
| GTATCACCAGTACCAGGTTG+TGG | + | chr3.2:38456080-38456099 | MS.gene019193:intron | 50.0% | |
| GTTGTCTTGAGCTTCCTGGT+TGG | - | chr3.2:38459072-38459091 | None:intergenic | 50.0% | |
| TAAACCTAGCACACGAACGG+TGG | - | chr3.2:38457637-38457656 | None:intergenic | 50.0% | |
| TCAGGAACGAGTTCCTACGT+AGG | + | chr3.2:38457100-38457119 | MS.gene019193:intron | 50.0% | |
| TCGTGTGCTAGGTTTAGGTG+AGG | + | chr3.2:38457641-38457660 | MS.gene019193:intron | 50.0% | |
| TGAGGGTAGAGAGAGAACGA+CGG | + | chr3.2:38457583-38457602 | MS.gene019193:intron | 50.0% | |
| TGCGTGCCAAATCCAAGTTC+TGG | + | chr3.2:38456175-38456194 | MS.gene019193:CDS | 50.0% | |
| TGGCTTCACGTCATAGAGTC+AGG | + | chr3.2:38458923-38458942 | MS.gene019193:CDS | 50.0% | |
| TGTCTTGAGCTTCCTGGTTG+GGG | - | chr3.2:38459070-38459089 | None:intergenic | 50.0% | |
| TTTGGCACGCACTTCATTGG+TGG | - | chr3.2:38456166-38456185 | None:intergenic | 50.0% | |
| ! | CGGTGGCCATGAATCTTTTC+CGG | - | chr3.2:38457620-38457639 | None:intergenic | 50.0% |
| ! | TCTTTTGACCCTACCCGGTT+CGG | + | chr3.2:38457719-38457738 | MS.gene019193:intron | 50.0% |
| AACGACGGCGAGAAATTCGC+CGG | + | chr3.2:38457598-38457617 | MS.gene019193:intron | 55.0% | |
| AACGGACGATCCTACGTGCT+GGG | + | chr3.2:38457879-38457898 | MS.gene019193:intron | 55.0% | |
| AGAAGATTAGGCCCCCAACC+AGG | + | chr3.2:38459055-38459074 | MS.gene019193:CDS | 55.0% | |
| CCTACGTAGGTTCGATTGGC+CGG | + | chr3.2:38457113-38457132 | MS.gene019193:intron | 55.0% | |
| CTCTTCCCACAACCTGGTAC+TGG | - | chr3.2:38456089-38456108 | None:intergenic | 55.0% | |
| CTTCGATACCAGAGCCGAAC+CGG | + | chr3.2:38458829-38458848 | MS.gene019193:CDS | 55.0% | |
| GAACAAGGTCGAGGCACGAT+TGG | + | chr3.2:38457838-38457857 | MS.gene019193:intron | 55.0% | |
| GAAGAGCTCTTCCCACAACC+TGG | - | chr3.2:38456095-38456114 | None:intergenic | 55.0% | |
| GCAGGTGCTTGCCATCAATG+AGG | + | chr3.2:38456558-38456577 | MS.gene019193:CDS | 55.0% | |
| GCATGTTAGGACTAGACGGC+TGG | + | chr3.2:38458236-38458255 | MS.gene019193:intron | 55.0% | |
| GCCGTCTAGTCCTAACATGC+TGG | - | chr3.2:38458236-38458255 | None:intergenic | 55.0% | |
| GTCTTGAGCTTCCTGGTTGG+GGG | - | chr3.2:38459069-38459088 | None:intergenic | 55.0% | |
| ! | ATTGGGTGTGGGAAGCACGT+AGG | + | chr3.2:38457856-38457875 | MS.gene019193:intron | 55.0% |
| ! | CTTTTGACCCTACCCGGTTC+GGG | + | chr3.2:38457720-38457739 | MS.gene019193:intron | 55.0% |
| ! | GTGTGGGAAGCACGTAGGAA+CGG | + | chr3.2:38457861-38457880 | MS.gene019193:intron | 55.0% |
| ! | TAGGTTCGATTGGCCGGTGT+AGG | + | chr3.2:38457119-38457138 | MS.gene019193:intron | 55.0% |
| !! | TGTGATATCCGGTTCGGCTC+TGG | - | chr3.2:38458840-38458859 | None:intergenic | 55.0% |
| !! | TTGGTTTGGGCTACCCGAAC+CGG | - | chr3.2:38457736-38457755 | None:intergenic | 55.0% |
| ATGGCCACCGTTCGTGTGCT+AGG | + | chr3.2:38457630-38457649 | MS.gene019193:intron | 60.0% | |
| CCGGCCAATCGAACCTACGT+AGG | - | chr3.2:38457116-38457135 | None:intergenic | 60.0% | |
| GAACGGACGATCCTACGTGC+TGG | + | chr3.2:38457878-38457897 | MS.gene019193:intron | 60.0% | |
| GTCGAGGCACGATTGGGTGT+GGG | + | chr3.2:38457845-38457864 | MS.gene019193:intron | 60.0% | |
| ! | TGGTTTGGGCTACCCGAACC+GGG | - | chr3.2:38457735-38457754 | None:intergenic | 60.0% |
| AGGCACGAGTCCCAGCACGT+AGG | - | chr3.2:38457892-38457911 | None:intergenic | 65.0% | |
| GGTCGAGGCACGATTGGGTG+TGG | + | chr3.2:38457844-38457863 | MS.gene019193:intron | 65.0% | |
| TGGGCTACCCGAACCGGGTA+GGG | - | chr3.2:38457730-38457749 | None:intergenic | 65.0% | |
| TTGGGCTACCCGAACCGGGT+AGG | - | chr3.2:38457731-38457750 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 38455870 | 38459125 | 38455870 | ID=MS.gene019193 |
| chr3.2 | mRNA | 38455870 | 38459125 | 38455870 | ID=MS.gene019193.t1;Parent=MS.gene019193 |
| chr3.2 | exon | 38455870 | 38455884 | 38455870 | ID=MS.gene019193.t1.exon1;Parent=MS.gene019193.t1 |
| chr3.2 | CDS | 38455870 | 38455884 | 38455870 | ID=cds.MS.gene019193.t1;Parent=MS.gene019193.t1 |
| chr3.2 | exon | 38456081 | 38456196 | 38456081 | ID=MS.gene019193.t1.exon2;Parent=MS.gene019193.t1 |
| chr3.2 | CDS | 38456081 | 38456196 | 38456081 | ID=cds.MS.gene019193.t1;Parent=MS.gene019193.t1 |
| chr3.2 | exon | 38456516 | 38456579 | 38456516 | ID=MS.gene019193.t1.exon3;Parent=MS.gene019193.t1 |
| chr3.2 | CDS | 38456516 | 38456579 | 38456516 | ID=cds.MS.gene019193.t1;Parent=MS.gene019193.t1 |
| chr3.2 | exon | 38458784 | 38459125 | 38458784 | ID=MS.gene019193.t1.exon4;Parent=MS.gene019193.t1 |
| chr3.2 | CDS | 38458784 | 38459125 | 38458784 | ID=cds.MS.gene019193.t1;Parent=MS.gene019193.t1 |
| Gene Sequence |
| Protein sequence |
