Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038296.t1 | XP_003617397.1 | 100 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 6.10E-98 | 366.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038296.t1 | Q9ATF5 | 89.9 | 178 | 18 | 0 | 1 | 178 | 1 | 178 | 6.9e-90 | 331.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038296.t1 | B7FJC3 | 100.0 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 4.4e-98 | 366.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038296 | MS.gene22178 | PPI |
| MS.gene038296 | MS.gene77617 | PPI |
| MS.gene69509 | MS.gene038296 | PPI |
| MS.gene038296 | MS.gene023381 | PPI |
| MS.gene038296 | MS.gene017078 | PPI |
| MS.gene038296 | MS.gene92155 | PPI |
| MS.gene038296 | MS.gene073967 | PPI |
| MS.gene038296 | MS.gene45549 | PPI |
| MS.gene038296 | MS.gene019193 | PPI |
| MS.gene038296 | MS.gene48048 | PPI |
| MS.gene038296 | MS.gene69509 | PPI |
| MS.gene038296 | MS.gene08259 | PPI |
| MS.gene038296 | MS.gene038298 | PPI |
| MS.gene038296 | MS.gene09188 | PPI |
| MS.gene038296 | MS.gene057092 | PPI |
| MS.gene038296 | MS.gene08260 | PPI |
| MS.gene038296 | MS.gene78387 | PPI |
| MS.gene038296 | MS.gene017080 | PPI |
| MS.gene038296 | MS.gene29778 | PPI |
| MS.gene48046 | MS.gene038296 | PPI |
| MS.gene038296 | MS.gene48046 | PPI |
| MS.gene039012 | MS.gene038296 | PPI |
| MS.gene038296 | MS.gene09046 | PPI |
| MS.gene038296 | MS.gene31095 | PPI |
| MS.gene038296 | MS.gene09187 | PPI |
| MS.gene038296 | MS.gene052057 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038296.t1 | MTR_5g091135 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene038296.t1 | MTR_5g091120 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene038296.t1 | MTR_2g098000 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.78e-133 | 370 |
| MS.gene038296.t1 | MTR_3g046320 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene038296.t1 | MTR_3g046320 | 95.402 | 174 | 8 | 0 | 5 | 178 | 3 | 176 | 3.08e-124 | 347 |
| MS.gene038296.t1 | MTR_2g019720 | 62.353 | 85 | 32 | 0 | 92 | 176 | 1 | 85 | 1.04e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038296.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 5 | 178 | 2.89e-119 | 335 |
| MS.gene038296.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 5 | 178 | 44 | 217 | 3.11e-119 | 336 |
| MS.gene038296.t1 | AT1G29965 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 1.19e-117 | 330 |
| MS.gene038296.t1 | AT3G14600 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 4.03e-117 | 329 |
| MS.gene038296.t1 | AT1G29970 | 89.017 | 173 | 19 | 0 | 6 | 178 | 140 | 312 | 1.03e-114 | 328 |
Find 49 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAGAAACTTACCAGAATT+TGG | 0.167108 | 5.4:-71861922 | None:intergenic |
| CACCAGAGGGAACTTGATTT+TGG | 0.187302 | 5.4:-71863725 | None:intergenic |
| CATAAACAGGTTGGGCTTCT+TGG | 0.201042 | 5.4:-71863797 | None:intergenic |
| AGATTAAGAACTATGGAATT+TGG | 0.243479 | 5.4:+71863503 | MS.gene038296:CDS |
| GAAAAGCAATGGACAAGTTT+TGG | 0.246012 | 5.4:+71862050 | MS.gene038296:CDS |
| GTTGGGCTTCTTGGCTTTGT+AGG | 0.248408 | 5.4:-71863788 | None:intergenic |
| AGATTTATCGCATGAAGCTT+TGG | 0.341025 | 5.4:+71861874 | MS.gene038296:CDS |
| AACTTACCAGAATTTGGATT+TGG | 0.348831 | 5.4:-71861916 | None:intergenic |
| ACGAGATGGCATCTCGTCAT+AGG | 0.358917 | 5.4:+71863614 | MS.gene038296:CDS |
| CCTACCAAGATTAAGAACTA+TGG | 0.366976 | 5.4:+71863496 | MS.gene038296:CDS |
| GATTTATCGCATGAAGCTTT+GGG | 0.367321 | 5.4:+71861875 | MS.gene038296:CDS |
| TTCGTGCCAAATCCAAATTC+TGG | 0.381119 | 5.4:+71861910 | MS.gene038296:CDS |
| AAGCTTCATGCGATAAATCT+TGG | 0.383045 | 5.4:-71861871 | None:intergenic |
| TCCCGGCTAATCTGTGCAAA+AGG | 0.396699 | 5.4:+71863677 | MS.gene038296:CDS |
| AATTCCATAGTTCTTAATCT+TGG | 0.403701 | 5.4:-71863500 | None:intergenic |
| ATTCACTGAATCACATAAAC+AGG | 0.404006 | 5.4:-71863810 | None:intergenic |
| TACCGTGATACTACTCTAAA+CGG | 0.441043 | 5.4:+71863571 | MS.gene038296:CDS |
| GGATTTGGCACGAACCTCAT+TGG | 0.442665 | 5.4:-71861901 | None:intergenic |
| AGTCTTAATGATTTGAATGC+AGG | 0.447032 | 5.4:-71863647 | None:intergenic |
| CTCTGGTGTACAAGAAGATT+AGG | 0.461451 | 5.4:+71863740 | MS.gene038296:CDS |
| AGCTTCATGCGATAAATCTT+GGG | 0.476384 | 5.4:-71861870 | None:intergenic |
| CTGAATCACATAAACAGGTT+GGG | 0.486125 | 5.4:-71863805 | None:intergenic |
| CTCTTCCAACAACCTGGTAC+TGG | 0.489846 | 5.4:-71861821 | None:intergenic |
| TTTCTTGAGGAAGTTGAAGA+AGG | 0.490067 | 5.4:+71862023 | MS.gene038296:CDS |
| TGGCATCTCGTCATAGGGTC+AGG | 0.497058 | 5.4:+71863620 | MS.gene038296:CDS |
| TTTCACCAGTACCAGGTTGT+TGG | 0.499494 | 5.4:+71861816 | MS.gene038296:CDS |
| TTGCGTTATCAGAGTCGTAC+TGG | 0.505845 | 5.4:+71863526 | MS.gene038296:CDS |
| CCCGGCTAATCTGTGCAAAA+GGG | 0.540578 | 5.4:+71863678 | MS.gene038296:CDS |
| AAGAGCACTTCCCACCGAAA+AGG | 0.541834 | 5.4:+71861839 | MS.gene038296:CDS |
| CGAGATGGCATCTCGTCATA+GGG | 0.544710 | 5.4:+71863615 | MS.gene038296:CDS |
| CCATAGTTCTTAATCTTGGT+AGG | 0.548600 | 5.4:-71863496 | None:intergenic |
| GAAACAGTTTCACCAGTACC+AGG | 0.549157 | 5.4:+71861809 | MS.gene038296:intron |
| TTCCAAAATCAAGTTCCCTC+TGG | 0.549470 | 5.4:+71863723 | MS.gene038296:CDS |
| AAGAAGGTTAAGAAAAGCAA+TGG | 0.552641 | 5.4:+71862039 | MS.gene038296:CDS |
| ACTGAATCACATAAACAGGT+TGG | 0.563649 | 5.4:-71863806 | None:intergenic |
| GTCTTAATGATTTGAATGCA+GGG | 0.566014 | 5.4:-71863646 | None:intergenic |
| CATTAAGACTGCCACCATCC+CGG | 0.574553 | 5.4:+71863660 | MS.gene038296:CDS |
| TTTGCACAGATTAGCCGGGA+TGG | 0.581078 | 5.4:-71863674 | None:intergenic |
| AGAAGATTAGGCCACCAACT+AGG | 0.603627 | 5.4:+71863752 | MS.gene038296:CDS |
| TGGTTATCACAATATGTACA+AGG | 0.613559 | 5.4:+71863546 | MS.gene038296:CDS |
| GAAGTGCTCTTCCAACAACC+TGG | 0.619307 | 5.4:-71861827 | None:intergenic |
| GCACAGATTAGCCGGGATGG+TGG | 0.623109 | 5.4:-71863671 | None:intergenic |
| GAAGCTTTGGGCAACCAATG+AGG | 0.630309 | 5.4:+71861887 | MS.gene038296:CDS |
| CTAATCTTCTTGTACACCAG+AGG | 0.631597 | 5.4:-71863739 | None:intergenic |
| TAATCTTCTTGTACACCAGA+GGG | 0.642722 | 5.4:-71863738 | None:intergenic |
| ATTGTTGTAGGTATTTCTTG+AGG | 0.651477 | 5.4:+71862010 | MS.gene038296:intron |
| GGAGACAATGTACAACGAGA+TGG | 0.663821 | 5.4:+71863600 | MS.gene038296:CDS |
| CGCCGTTTAGAGTAGTATCA+CGG | 0.671590 | 5.4:-71863573 | None:intergenic |
| TACTACTCTAAACGGCGCTG+TGG | 0.679213 | 5.4:+71863579 | MS.gene038296:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATATACAATAAAAAAA+AGG | - | chr5.4:71863318-71863337 | None:intergenic | 10.0% |
| !! | TTCTATAAAATTTCAATTAA+CGG | - | chr5.4:71862110-71862129 | None:intergenic | 10.0% |
| !!! | TTAATTGAAATTTTATAGAA+GGG | + | chr5.4:71862110-71862129 | MS.gene038296:intron | 10.0% |
| !! | AAGCAACAAATAAAAAAAAA+TGG | - | chr5.4:71862975-71862994 | None:intergenic | 15.0% |
| !! | GAATAGAAAAAATTAATGAT+AGG | + | chr5.4:71862385-71862404 | MS.gene038296:intron | 15.0% |
| !! | TCTATAAAATTTCAATTAAC+GGG | - | chr5.4:71862109-71862128 | None:intergenic | 15.0% |
| !! | TTAATAATGTTAATTGTTGT+AGG | + | chr5.4:71861998-71862017 | MS.gene038296:intron | 15.0% |
| !!! | GTTAATTGAAATTTTATAGA+AGG | + | chr5.4:71862109-71862128 | MS.gene038296:intron | 15.0% |
| !! | AGTCACAATATACAATTTAA+AGG | - | chr5.4:71863265-71863284 | None:intergenic | 20.0% |
| !! | ATATTAGTATATTGTACAGT+TGG | + | chr5.4:71862456-71862475 | MS.gene038296:intron | 20.0% |
| !! | CAAAATAAAATCAGTTCAAA+AGG | - | chr5.4:71861757-71861776 | None:intergenic | 20.0% |
| !!! | ATTTTAAGTAGATAGTACTT+TGG | + | chr5.4:71863037-71863056 | MS.gene038296:intron | 20.0% |
| ! | AATAAAATCAGTTCAAAAGG+TGG | - | chr5.4:71861754-71861773 | None:intergenic | 25.0% |
| ! | AATTCCATAGTTCTTAATCT+TGG | - | chr5.4:71863503-71863522 | None:intergenic | 25.0% |
| ! | AGATTAAGAACTATGGAATT+TGG | + | chr5.4:71863503-71863522 | MS.gene038296:CDS | 25.0% |
| ! | ATTAGAAACTTACCAGAATT+TGG | - | chr5.4:71861925-71861944 | None:intergenic | 25.0% |
| ! | ATTTATACTTAGACTGTGTT+TGG | + | chr5.4:71862148-71862167 | MS.gene038296:intron | 25.0% |
| ! | GTCAATAAAAACAAATAAGC+TGG | - | chr5.4:71862187-71862206 | None:intergenic | 25.0% |
| ! | TGAGAAAATTAAGTTTGATG+CGG | + | chr5.4:71862945-71862964 | MS.gene038296:intron | 25.0% |
| ! | TTATGTTGAAATCCAAACAT+AGG | + | chr5.4:71863201-71863220 | MS.gene038296:intron | 25.0% |
| !! | ATGTAATATCTGTCAGTTTT+TGG | + | chr5.4:71862697-71862716 | MS.gene038296:intron | 25.0% |
| !! | CTATTTCTCTCATAAATAGA+GGG | + | chr5.4:71862607-71862626 | MS.gene038296:intron | 25.0% |
| !! | TCTATTTCTCTCATAAATAG+AGG | + | chr5.4:71862606-71862625 | MS.gene038296:intron | 25.0% |
| !! | TGCATGTAAAAGCTTTTATT+TGG | + | chr5.4:71862289-71862308 | MS.gene038296:intron | 25.0% |
| AAATGATGTATTGCCATAAC+TGG | - | chr5.4:71863230-71863249 | None:intergenic | 30.0% | |
| AACTTACCAGAATTTGGATT+TGG | - | chr5.4:71861919-71861938 | None:intergenic | 30.0% | |
| AAGAAGGTTAAGAAAAGCAA+TGG | + | chr5.4:71862039-71862058 | MS.gene038296:CDS | 30.0% | |
| AATTGTTGTGAGAGAATTCT+TGG | + | chr5.4:71863364-71863383 | MS.gene038296:intron | 30.0% | |
| ACAACCAGAATATCATTAGA+GGG | - | chr5.4:71862585-71862604 | None:intergenic | 30.0% | |
| AGTCTTAATGATTTGAATGC+AGG | - | chr5.4:71863650-71863669 | None:intergenic | 30.0% | |
| ATTGTTGTAGGTATTTCTTG+AGG | + | chr5.4:71862010-71862029 | MS.gene038296:intron | 30.0% | |
| GTCTTAATGATTTGAATGCA+GGG | - | chr5.4:71863649-71863668 | None:intergenic | 30.0% | |
| TAAACAAGTGCTTATAAGGT+AGG | - | chr5.4:71862321-71862340 | None:intergenic | 30.0% | |
| TAAGTAGATAGTACTTTGGT+TGG | + | chr5.4:71863041-71863060 | MS.gene038296:intron | 30.0% | |
| TAATAGCTAAAGCAAACACA+GGG | - | chr5.4:71863400-71863419 | None:intergenic | 30.0% | |
| TCCAAAAAGATGGAAATTGA+AGG | - | chr5.4:71863428-71863447 | None:intergenic | 30.0% | |
| TCTTCGAATAGACATCAAAA+AGG | - | chr5.4:71862835-71862854 | None:intergenic | 30.0% | |
| TGGTTAAACAAGTGCTTATA+AGG | - | chr5.4:71862325-71862344 | None:intergenic | 30.0% | |
| TGGTTATCACAATATGTACA+AGG | + | chr5.4:71863546-71863565 | MS.gene038296:CDS | 30.0% | |
| TTGTGTCTATCTCTCATAAA+TGG | - | chr5.4:71862549-71862568 | None:intergenic | 30.0% | |
| ! | ACCTTCAATTTCCATCTTTT+TGG | + | chr5.4:71863424-71863443 | MS.gene038296:intron | 30.0% |
| ! | ATTTCCATCTTTTTGGACAT+AGG | + | chr5.4:71863431-71863450 | MS.gene038296:intron | 30.0% |
| ! | ATTTTGTGTGAATCGTAACA+CGG | + | chr5.4:71861771-71861790 | MS.gene038296:intron | 30.0% |
| ! | TTTCCATCTTTTTGGACATA+GGG | + | chr5.4:71863432-71863451 | MS.gene038296:intron | 30.0% |
| !! | AGAGGAGTAAGTTATTTCTT+AGG | + | chr5.4:71862430-71862449 | MS.gene038296:intron | 30.0% |
| !! | ATAGTACTTTGGTTGGTAAA+GGG | + | chr5.4:71863048-71863067 | MS.gene038296:intron | 30.0% |
| AAGCTTCATGCGATAAATCT+TGG | - | chr5.4:71861874-71861893 | None:intergenic | 35.0% | |
| AGAGCAAACTTGAACTCATA+TGG | + | chr5.4:71862639-71862658 | MS.gene038296:intron | 35.0% | |
| AGATTTATCGCATGAAGCTT+TGG | + | chr5.4:71861874-71861893 | MS.gene038296:CDS | 35.0% | |
| AGCTTCATGCGATAAATCTT+GGG | - | chr5.4:71861873-71861892 | None:intergenic | 35.0% | |
| CAAACATAGGTAACCAGTTA+TGG | + | chr5.4:71863214-71863233 | MS.gene038296:intron | 35.0% | |
| CACAACCAGAATATCATTAG+AGG | - | chr5.4:71862586-71862605 | None:intergenic | 35.0% | |
| CATAAATGGAGGTAAATGGA+TGG | - | chr5.4:71862535-71862554 | None:intergenic | 35.0% | |
| CATAACTGGTTACCTATGTT+TGG | - | chr5.4:71863216-71863235 | None:intergenic | 35.0% | |
| CCATAGTTCTTAATCTTGGT+AGG | - | chr5.4:71863499-71863518 | None:intergenic | 35.0% | |
| CCTACCAAGATTAAGAACTA+TGG | + | chr5.4:71863496-71863515 | MS.gene038296:CDS | 35.0% | |
| CTCTCATAAATGGAGGTAAA+TGG | - | chr5.4:71862539-71862558 | None:intergenic | 35.0% | |
| CTGTGGAGTTAATGTTAAGT+TGG | + | chr5.4:71862363-71862382 | MS.gene038296:intron | 35.0% | |
| GATTTATCGCATGAAGCTTT+GGG | + | chr5.4:71861875-71861894 | MS.gene038296:CDS | 35.0% | |
| GTAATAGCTAAAGCAAACAC+AGG | - | chr5.4:71863401-71863420 | None:intergenic | 35.0% | |
| GTTCTGTTGTGATTATTGCT+GGG | + | chr5.4:71863101-71863120 | MS.gene038296:intron | 35.0% | |
| TAATCTTCTTGTACACCAGA+GGG | - | chr5.4:71863741-71863760 | None:intergenic | 35.0% | |
| TACCGTGATACTACTCTAAA+CGG | + | chr5.4:71863571-71863590 | MS.gene038296:CDS | 35.0% | |
| TACTTAGACTGTGTTTGGAT+TGG | + | chr5.4:71862153-71862172 | MS.gene038296:intron | 35.0% | |
| TGTCTATCTCTCATAAATGG+AGG | - | chr5.4:71862546-71862565 | None:intergenic | 35.0% | |
| TGTGTACGAGGTAGATAAAT+GGG | + | chr5.4:71862902-71862921 | MS.gene038296:intron | 35.0% | |
| TGTTCTGTTGTGATTATTGC+TGG | + | chr5.4:71863100-71863119 | MS.gene038296:intron | 35.0% | |
| TTTCTTGAGGAAGTTGAAGA+AGG | + | chr5.4:71862023-71862042 | MS.gene038296:CDS | 35.0% | |
| ! | GAAAAGCAATGGACAAGTTT+TGG | + | chr5.4:71862050-71862069 | MS.gene038296:CDS | 35.0% |
| ! | TTCCATCTTTTTGGACATAG+GGG | + | chr5.4:71863433-71863452 | MS.gene038296:intron | 35.0% |
| !! | GATAGTACTTTGGTTGGTAA+AGG | + | chr5.4:71863047-71863066 | MS.gene038296:intron | 35.0% |
| !! | TAACTCCACAGCTGTTTTAA+GGG | - | chr5.4:71862354-71862373 | None:intergenic | 35.0% |
| !! | TTAACTCCACAGCTGTTTTA+AGG | - | chr5.4:71862355-71862374 | None:intergenic | 35.0% |
| !!! | ACAAGTTTTGGCTATCAATG+AGG | + | chr5.4:71862062-71862081 | MS.gene038296:CDS | 35.0% |
| !!! | TGGCTTTGTAGGTTGTTTTT+AGG | - | chr5.4:71863780-71863799 | None:intergenic | 35.0% |
| AACCCCTATGTCCAAAAAGA+TGG | - | chr5.4:71863438-71863457 | None:intergenic | 40.0% | |
| AATAACTTACTCCTCTCCAC+AGG | - | chr5.4:71862426-71862445 | None:intergenic | 40.0% | |
| ATAACTTACTCCTCTCCACA+GGG | - | chr5.4:71862425-71862444 | None:intergenic | 40.0% | |
| CTAATCTTCTTGTACACCAG+AGG | - | chr5.4:71863742-71863761 | None:intergenic | 40.0% | |
| CTAGATTCCACCATGACTTA+GGG | - | chr5.4:71862881-71862900 | None:intergenic | 40.0% | |
| CTCTGGTGTACAAGAAGATT+AGG | + | chr5.4:71863740-71863759 | MS.gene038296:CDS | 40.0% | |
| GATAGACACAAACGATAGAG+TGG | + | chr5.4:71862558-71862577 | MS.gene038296:intron | 40.0% | |
| GCAAACTTGAACTCATATGG+CGG | + | chr5.4:71862642-71862661 | MS.gene038296:intron | 40.0% | |
| GTGTGTACGAGGTAGATAAA+TGG | + | chr5.4:71862901-71862920 | MS.gene038296:intron | 40.0% | |
| TGGACCCTCTAATGATATTC+TGG | + | chr5.4:71862578-71862597 | MS.gene038296:intron | 40.0% | |
| TGTAACCTTTCCCTAAGTCA+TGG | + | chr5.4:71862868-71862887 | MS.gene038296:intron | 40.0% | |
| TGTGAGAGAATTCTTGGAGT+AGG | + | chr5.4:71863370-71863389 | MS.gene038296:intron | 40.0% | |
| TTCCAAAATCAAGTTCCCTC+TGG | + | chr5.4:71863723-71863742 | MS.gene038296:CDS | 40.0% | |
| TTCGTGCCAAATCCAAATTC+TGG | + | chr5.4:71861910-71861929 | MS.gene038296:CDS | 40.0% | |
| ! | CTTGGGATGTTCATCCTTTT+CGG | - | chr5.4:71861856-71861875 | None:intergenic | 40.0% |
| ! | GAGTATAATTTTGCACCCTG+TGG | + | chr5.4:71862407-71862426 | MS.gene038296:intron | 40.0% |
| !! | ATATGGCGGCGATTTGATTT+TGG | + | chr5.4:71862656-71862675 | MS.gene038296:intron | 40.0% |
| !! | TACTTTGGTTGGTAAAGGGA+AGG | + | chr5.4:71863052-71863071 | MS.gene038296:intron | 40.0% |
| !! | TATGGCGGCGATTTGATTTT+GGG | + | chr5.4:71862657-71862676 | MS.gene038296:intron | 40.0% |
| !!! | AGCTGTTTTAAGGGACTGTT+TGG | - | chr5.4:71862345-71862364 | None:intergenic | 40.0% |
| !!! | GTTGTTTTTAGGCTCCTAGT+TGG | - | chr5.4:71863769-71863788 | None:intergenic | 40.0% |
| AACCTTTCCCTAAGTCATGG+TGG | + | chr5.4:71862871-71862890 | MS.gene038296:intron | 45.0% | |
| ACAGTCCCTTAAAACAGCTG+TGG | + | chr5.4:71862346-71862365 | MS.gene038296:intron | 45.0% | |
| AGAAGATTAGGCCACCAACT+AGG | + | chr5.4:71863752-71863771 | MS.gene038296:CDS | 45.0% | |
| CCTAGATTCCACCATGACTT+AGG | - | chr5.4:71862882-71862901 | None:intergenic | 45.0% | |
| GAAACAGTTTCACCAGTACC+AGG | + | chr5.4:71861809-71861828 | MS.gene038296:intron | 45.0% | |
| GAACAAGCCCTACTTGCAAT+CGG | - | chr5.4:71863085-71863104 | None:intergenic | 45.0% | |
| GACTTGCATAAGCGCTTATG+AGG | + | chr5.4:71862204-71862223 | MS.gene038296:intron | 45.0% | |
| GGAGACAATGTACAACGAGA+TGG | + | chr5.4:71863600-71863619 | MS.gene038296:CDS | 45.0% | |
| TGTTGCTCCGATTGCAAGTA+GGG | + | chr5.4:71863075-71863094 | MS.gene038296:intron | 45.0% | |
| TTCCACCATGACTTAGGGAA+AGG | - | chr5.4:71862876-71862895 | None:intergenic | 45.0% | |
| TTGCGTTATCAGAGTCGTAC+TGG | + | chr5.4:71863526-71863545 | MS.gene038296:CDS | 45.0% | |
| TTTCACCAGTACCAGGTTGT+TGG | + | chr5.4:71861816-71861835 | MS.gene038296:CDS | 45.0% | |
| ! | CACCAGAGGGAACTTGATTT+TGG | - | chr5.4:71863728-71863747 | None:intergenic | 45.0% |
| ! | CATAAACAGGTTGGGCTTCT+TGG | - | chr5.4:71863800-71863819 | None:intergenic | 45.0% |
| ! | CCTAAGTCATGGTGGAATCT+AGG | + | chr5.4:71862879-71862898 | MS.gene038296:intron | 45.0% |
| ! | CGCCGTTTAGAGTAGTATCA+CGG | - | chr5.4:71863576-71863595 | None:intergenic | 45.0% |
| ! | GGATGTTCATCCTTTTCGGT+GGG | - | chr5.4:71861852-71861871 | None:intergenic | 45.0% |
| ! | TAATTTTGCACCCTGTGGAG+AGG | + | chr5.4:71862412-71862431 | MS.gene038296:intron | 45.0% |
| ! | TCCCTTTTGCACAGATTAGC+CGG | - | chr5.4:71863682-71863701 | None:intergenic | 45.0% |
| !! | GTTTTTAGGCTCCTAGTTGG+TGG | - | chr5.4:71863766-71863785 | None:intergenic | 45.0% |
| ACGAGATGGCATCTCGTCAT+AGG | + | chr5.4:71863614-71863633 | MS.gene038296:CDS | 50.0% | |
| CATTAAGACTGCCACCATCC+CGG | + | chr5.4:71863660-71863679 | MS.gene038296:CDS | 50.0% | |
| CCCGGCTAATCTGTGCAAAA+GGG | + | chr5.4:71863678-71863697 | MS.gene038296:CDS | 50.0% | |
| CGAGATGGCATCTCGTCATA+GGG | + | chr5.4:71863615-71863634 | MS.gene038296:CDS | 50.0% | |
| CTCTTCCAACAACCTGGTAC+TGG | - | chr5.4:71861824-71861843 | None:intergenic | 50.0% | |
| GGATTTGGCACGAACCTCAT+TGG | - | chr5.4:71861904-71861923 | None:intergenic | 50.0% | |
| GTGGAATCTAGGTGTGTACG+AGG | + | chr5.4:71862890-71862909 | MS.gene038296:intron | 50.0% | |
| TACTACTCTAAACGGCGCTG+TGG | + | chr5.4:71863579-71863598 | MS.gene038296:CDS | 50.0% | |
| TCCCGGCTAATCTGTGCAAA+AGG | + | chr5.4:71863677-71863696 | MS.gene038296:CDS | 50.0% | |
| ! | GAAGTGCTCTTCCAACAACC+TGG | - | chr5.4:71861830-71861849 | None:intergenic | 50.0% |
| ! | GGGATGTTCATCCTTTTCGG+TGG | - | chr5.4:71861853-71861872 | None:intergenic | 50.0% |
| ! | GTGTTGCTCCGATTGCAAGT+AGG | + | chr5.4:71863074-71863093 | MS.gene038296:intron | 50.0% |
| ! | TTTGCACAGATTAGCCGGGA+TGG | - | chr5.4:71863677-71863696 | None:intergenic | 50.0% |
| !! | AAGAGCACTTCCCACCGAAA+AGG | + | chr5.4:71861839-71861858 | MS.gene038296:CDS | 50.0% |
| !! | CCCTTTTGCACAGATTAGCC+GGG | - | chr5.4:71863681-71863700 | None:intergenic | 50.0% |
| !! | GAAGCTTTGGGCAACCAATG+AGG | + | chr5.4:71861887-71861906 | MS.gene038296:CDS | 50.0% |
| !! | GTTGGGCTTCTTGGCTTTGT+AGG | - | chr5.4:71863791-71863810 | None:intergenic | 50.0% |
| TGGCATCTCGTCATAGGGTC+AGG | + | chr5.4:71863620-71863639 | MS.gene038296:CDS | 55.0% | |
| ! | GCACAGATTAGCCGGGATGG+TGG | - | chr5.4:71863674-71863693 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 71861706 | 71863822 | 71861706 | ID=MS.gene038296 |
| chr5.4 | mRNA | 71861706 | 71863822 | 71861706 | ID=MS.gene038296.t1;Parent=MS.gene038296 |
| chr5.4 | exon | 71861706 | 71861720 | 71861706 | ID=MS.gene038296.t1.exon1;Parent=MS.gene038296.t1 |
| chr5.4 | CDS | 71861706 | 71861720 | 71861706 | ID=cds.MS.gene038296.t1;Parent=MS.gene038296.t1 |
| chr5.4 | exon | 71861816 | 71861931 | 71861816 | ID=MS.gene038296.t1.exon2;Parent=MS.gene038296.t1 |
| chr5.4 | CDS | 71861816 | 71861931 | 71861816 | ID=cds.MS.gene038296.t1;Parent=MS.gene038296.t1 |
| chr5.4 | exon | 71862020 | 71862083 | 71862020 | ID=MS.gene038296.t1.exon3;Parent=MS.gene038296.t1 |
| chr5.4 | CDS | 71862020 | 71862083 | 71862020 | ID=cds.MS.gene038296.t1;Parent=MS.gene038296.t1 |
| chr5.4 | exon | 71863481 | 71863822 | 71863481 | ID=MS.gene038296.t1.exon4;Parent=MS.gene038296.t1 |
| chr5.4 | CDS | 71863481 | 71863822 | 71863481 | ID=cds.MS.gene038296.t1;Parent=MS.gene038296.t1 |
| Gene Sequence |
| Protein sequence |
